ID:

dmo_900

 Coordinate:

scaffold_6496:220944-221094 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.0 -3.9

Flybase annnotation

CDS [Dmoj\GI19763-cds]; exon [dmoj_GLEANR_4674:3]; intron [Dmoj\GI19763-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_1856:3705-3725 +
  2. scaffold_5321:796-816 +
  3. scaffold_6328:895528-895548 +
  4. scaffold_6328:1559344-1559364 +
  5. scaffold_6473:7006441-7006461 +
  6. scaffold_6473:13814069-13814089 +
  7. scaffold_6475:82602-82622 +
  8. scaffold_6482:256127-256147 +
  9. scaffold_6482:1324627-1324647 +
  10. dmo_900  scaffold_6496:220998-221018 +
  11. scaffold_6496:2475627-2475647 +
  12. scaffold_6498:2761281-2761301 +
  13. scaffold_6500:4161657-4161677 +
  14. scaffold_6500:14206176-14206196 +
  15. scaffold_6540:6590540-6590560 +
  16. scaffold_6540:14682953-14682973 +
  17. scaffold_6540:30381690-30381710 +
  18. scaffold_6541:1234972-1234992 +
  19. scaffold_6541:1735244-1735264 +
  20. scaffold_6680:17357014-17357034 +
  21. scaffold_142:723-743 +
  22. scaffold_350:717-737 +
  23. scaffold_2803:987-1007 +
  24. scaffold_3125:703-723 +
  25. scaffold_5451:564-584 +
  26. scaffold_6410:36614-36634 +
  27. scaffold_6475:51563-51583 +
  28. scaffold_6475:61416-61436 +
  29. scaffold_6475:62474-62494 +
  30. scaffold_6493:83156-83176 +
  31. scaffold_6496:26828004-26828024 +
  32. scaffold_6500:11373133-11373153 +
  33. scaffold_6500:13291236-13291256 +
  34. scaffold_6500:15528318-15528338 +
  35. scaffold_6500:20352194-20352214 +
  36. scaffold_6500:25806588-25806608 +
  37. scaffold_6501:344771-344791 +
  38. scaffold_6540:6559031-6559051 +
  39. scaffold_6541:401629-401649 +
  40. scaffold_6541:1468770-1468790 +
  41. scaffold_114:217-237 -
  42. scaffold_459:546-566 -
  43. scaffold_1624:1591-1611 -
  44. scaffold_2680:1564-1584 -
  45. scaffold_3097:23893-23913 -
  46. scaffold_3097:82896-82916 -
  47. scaffold_3994:3054-3074 -
  48. scaffold_4231:8530-8550 -
  49. scaffold_4726:1823-1843 -
  50. scaffold_5907:1325-1345 -
  51. scaffold_6467:8652-8672 -
  52. scaffold_6496:25472621-25472641 -
  53. scaffold_6500:30443742-30443762 -
  54. scaffold_6540:7294166-7294186 -
  55. scaffold_6540:11704258-11704278 -
  56. scaffold_6540:22729057-22729077 -
  57. scaffold_6541:1052357-1052377 -
  58. scaffold_6541:1313342-1313362 -
  59. scaffold_6680:20991851-20991871 -
  60. scaffold_6680:21055301-21055321 -
  61. scaffold_1832:885-905 -
  62. scaffold_2468:36-56 -
  63. scaffold_3153:634-654 -
  64. scaffold_4373:5226-5246 -
  65. scaffold_4590:486-506 -
  66. scaffold_5825:5578-5598 -
  67. scaffold_5941:205-225 -
  68. scaffold_6103:34708-34728 -
  69. scaffold_6314:7140-7160 -
  70. scaffold_6482:2650877-2650897 -
  71. scaffold_6491:110288-110308 -
  72. scaffold_6496:15507720-15507740 -
  73. scaffold_6498:2206774-2206794 -
  74. scaffold_6498:2581344-2581364 -
  75. scaffold_6500:31293269-31293289 -
  76. scaffold_6501:170683-170703 -
  77. scaffold_6541:2077383-2077403 -
  78. scaffold_6541:2111075-2111095 -
  79. scaffold_6541:2282293-2282313 -
  80. scaffold_6680:23228183-23228203 -
  81. scaffold_1769:3203-3223 -
  82. scaffold_3630:279-299 -
  83. scaffold_5974:1147-1167 -
  84. scaffold_6355:9090-9110 -
  85. scaffold_6473:11418895-11418915 -
  86. scaffold_6482:42632-42652 -
  87. scaffold_6482:382827-382847 -
  88. scaffold_6482:2305573-2305593 -
  89. scaffold_6496:26660170-26660190 -
  90. scaffold_6500:29663232-29663252 -
  91. scaffold_6500:30196485-30196505 -
  92. scaffold_6500:30401883-30401903 -
  93. scaffold_6540:438959-438979 -
  94. scaffold_6540:982842-982862 -
  95. scaffold_6541:920934-920954 -
  96. scaffold_6541:922503-922523 -
  97. scaffold_6541:1030003-1030023 -
  98. scaffold_6541:2171199-2171219 -
  99. scaffold_6541:2189122-2189142 -
  100. scaffold_6680:23856531-23856551 -
star
  1. scaffold_4:997-1017 +
  2. scaffold_2226:313-333 +
  3. scaffold_4388:1668-1688 +
  4. scaffold_4536:8111-8131 +
  5. scaffold_5080:777-797 +
  6. scaffold_5321:758-778 +
  7. scaffold_6473:13843064-13843084 +
  8. scaffold_6482:1324589-1324609 +
  9. dmo_900  scaffold_6496:220960-220980 +
  10. scaffold_6496:2475589-2475609 +
  11. scaffold_6496:24731492-24731512 +
  12. scaffold_6500:5574085-5574105 +
  13. scaffold_6500:5854864-5854884 +
  14. scaffold_6500:14206138-14206158 +
  15. scaffold_6500:26729974-26729994 +
  16. scaffold_6501:171469-171489 +
  17. scaffold_6540:922640-922660 +
  18. scaffold_6541:685121-685141 +
  19. scaffold_6541:1735206-1735226 +
  20. scaffold_6680:21850307-21850327 +
  21. scaffold_20:1933-1953 -
  22. scaffold_41:3111-3131 -
  23. scaffold_50:50-70 -
  24. scaffold_3787:237-257 -
  25. scaffold_4092:875-895 -
  26. scaffold_4597:6951-6971 -
  27. scaffold_6359:3523374-3523394 -
  28. scaffold_6412:14442-14462 -
  29. scaffold_6473:15297709-15297729 -
  30. scaffold_6482:2688214-2688234 -
  31. scaffold_6491:136532-136552 -
  32. scaffold_6493:80443-80463 -
  33. scaffold_6496:26755977-26755997 -
  34. scaffold_6498:541982-542002 -
  35. scaffold_6500:1857016-1857036 -
  36. scaffold_6500:14511156-14511176 -
  37. scaffold_6500:15875526-15875546 -
  38. scaffold_6500:16158785-16158805 -
  39. scaffold_6541:73563-73583 -
  40. scaffold_6541:517167-517187 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTATGCGTGTGTGTGTATGTATGCCTGTGTTTGCGTACGTGCGTGTGTGTGTGTGTGCGTGTTTCTTGTGTAAGCTGAAAGTCGCGAAAAAGTATTGAAATATCTATTGCTCCAAGGGTTCAGGGGATCTCGTAGTCGAGCAGTCTCGACTAGAGCTTTCTTACTTGTTATATTATCTCTTATTTGTCTCGCCCATGCAGGTTGTTGGCGCCACGGAGGAGGTGAACAGCGCCACTGAGATGCACGAGGG
******************************************************************.........(((((....((((....((((....))))...))))........))))).****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
 V049
head
........................................................................................................CTATTGCTCCAAGGGTTCAGG.............................................................................................................................. 21 0 20 1.75 35 35 0 0 0 0
........................................................................................................................................................................................TTCTCTAGCCCATTCAGGT................................................ 19 3 20 0.55 11 11 0 0 0 0
..................................................................TTGTGTAAGCTGAAAGTCGCG.................................................................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0
......................................................................................................................................................................................................................................CGCCACTGAGACGGAAGAGG. 20 3 9 0.11 1 0 0 0 1 0
...............................................................TTCTTGTGTAAGCTGAAAGTCGCG.................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................TCGTAGTCGAGCAGTCTCGACTAGAGC.............................................................................................. 27 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................TCGACTAGAGCTTTCTTACT..................................................................................... 20 0 20 0.10 2 2 0 0 0 0
...........................................................................................................TTGCTCCAAGGGTTCAGGGGA........................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0
.....................................................................TGTTAGCTGAAAGTCGCGAAAAAGT............................................................................................................................................................. 25 1 20 0.10 2 0 0 2 0 0
......................................................................................................................GTTCAGGGGATCTCGTAGTCGAGCAG........................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
......................TGCCTGTGTTTGCGTACGTGCGTGTG........................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................ATTGAAATATCTATTGCTC.......................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.........................................................................................................TATTGCTCCAAGGGTTCAGGGGAT.......................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
.....................................................................TGTAAGCTGAAGGTCGCGAAAAGGT............................................................................................................................................................. 25 2 20 0.05 1 0 1 0 0 0
...................................................................TGTGTAAGCTGAAAGTCGCGAA.................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TTGCTCCAAGGGTTCAGGGG............................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0
....................................................TGTGTGCGTGTTTCTTGTGTA.................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.................................................................................................GTAATATCTATTGCTCCAAGGGTTCAGG.............................................................................................................................. 28 1 20 0.05 1 0 0 1 0 0
................................................................................................................................................TCTCGACTAGAGCTTTCTTACTTG................................................................................... 24 0 20 0.05 1 0 1 0 0 0
................................TGCGTACGTGCGTGTGTGTGTG..................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
..........TGTGTGTATGTATGCCTGTGTT........................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.......................................................GTGCGTGTTTCTTGTGTAAGCTGAAA.......................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.................................................................CTTGTGTAAGCTGACAGTCGC..................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 1
........................CCTGTGTTTGCGTACGTGCGTG............................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
......................................................................GTAAGCTGAAAGTCGCGAAA................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACATACGCACACACACATACATACGGACACAAACGCATGCACGCACACACACACACACGCACAAAGAACACATTCGACTTTCAGCGCTTTTTCATAACTTTATAGATAACGAGGTTCCCAAGTCCCCTAGAGCATCAGCTCGTCAGAGCTGATCTCGAAAGAATGAACAATATAATAGAGAATAAACAGAGCGGGTACGTCCAACAACCGCGGTGCCTCCTCCACTTGTCGCGGTGACTCTACGTGCTCCC
******************************************************************************************************************************.........(((((....((((....((((....))))...))))........))))).****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body
................................................................................................................................................................................................GGGTACGTCCAGCAACCG......................................... 18 1 1 1.00 1 1 0 0
...................................................................................GCGCTTTTTCATAACTTTATAGA................................................................................................................................................. 23 0 20 0.30 6 0 6 0
...............................................................................................................................................................................................AGGGTACGTCCAGCAACCG......................................... 19 2 4 0.25 1 1 0 0
........................................................................................................................................................................................AAGAGATCGGGTAAGTCCA................................................ 19 3 20 0.15 3 0 2 1
....................................................................................................TATAGATAACGAGGTTCCCAAGTCCCCTA.......................................................................................................................... 29 0 20 0.10 2 0 2 0
...................................................CACACACGCACAAAGAACACAT.................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0
......................................................................................................................................................GATCTCGAAAGAATGAACAATATAA............................................................................ 25 0 20 0.05 1 1 0 0
.......................................................................................................AGATAACGAGGTTCCCAAGTCCCCT........................................................................................................................... 25 0 20 0.05 1 0 0 1
...................................................................ACACATTCGACTTTCAGCGCTT.................................................................................................................................................................. 22 0 20 0.05 1 0 1 0
................................................................................TCAGCGCTTTTTCATAACTTTATAGATC............................................................................................................................................... 28 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:220894-221144 + dmo_900 TGTATGCGTGTGTGTGTATGTATGC----------------CTGTGTTTGCGTACGTGCGTGTGTGTGTGTGTGCGTGTT-----------------------TCT-------------T-----------G--T--GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCGAAAAAGTATTG-------------------------------------------------AAATATCTATTGCT----------CCAAGGGTTCAGGGGATCTCGTAGTCGA---GCAGTCTCGACTAGAGC-----------------------------------------------------------------------------------------------TTTCTTACTTGTTATATT--------ATCTCTT--A-----------TTTGTCTCGCCCATGCAGGTTGTTGGCGCCAC-------------------------------------GGAGGAGGTGAACAGCGCCACTGAGATGCACGAGGG
droVir3 scaffold_12970:3028496-3028723 - AGCGCG-GTGTTTCTATGCGTTTAT------------GC--GTGCGTGCGTGTGTGTGCATGTGTGAGTATGTGTGTGTA-----------------------TCT-------------G---------TAG--AAAG--AAG-----------------------------------------CAAGAATATT-----------TTTAAC------------------------GGCAGCTCGG--------------------------------------------CG----------CTGTGGGTTCAGGGTATCTTATAGTCGG---GCACTCACGGCCAGAGT-ACTATTAGTTGTATTTTGTTGGTTT----TTAAGTTTTTTGAC---------------------------------------------------TGCT--TTGGCTGAGGCA--------TGCTTAA--G-----------CTGG-------------------TGGCGCCAC-------------------------------------------------------------------------
droGri2 scaffold_14906:13053836-13054029 - TGTATGTATGTATGAATATTCACGT----------------GTTTGTCGGC-TGCGC---------------------TC-----------------------ACC-------------TT--TTG-----G--TGC---AAAACTTTTTAGAGGGAAATT-----------TTCCAACTTGAACTAGAATATT---------TGTTTAAC------------------------------------------------------------------------------------------AGCAGGGTTCAGGGTATATCGTAGTCGA---CCTCACTCGACTACAGTTACTGTTACTTGTTT-ATGTTCGTCTGTCGTGTA----------G-------------------------------------------------------------------------------------------CTTG-----------TCAATG------------------------------------------------------------------------------------------
droWil2 scf2_1100000004401:654384-654488 + TGTATGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------TGG--TGTG--AGATAT-----------ATTT-----------C-----------------------------------------GA-CAAACATATGA-------------------------------------------------ATGTATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------
dp5 XR_group6:12953152-12953264 - TCTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT-----------------------TTG-------------G-----------A--T--GTGTG--------------------------------------------------------------CCTGCAAGCAGTGCATACATATGT-------------------------------------------------ATGTGTTTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-------------------------------------------------------------------------------------------------------
droPer2 scaffold_14:343983-344119 + TGTGTGTGTGTGTATGTATGCGTTT----------------GTGGGAGGGGTTATGTTTG---------------------------------------------GGGTGTATATGGGGTA--TATGTATGA--TTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGGCTCTCTTTCTAGGCTCAGTCGCAGTCTACAAATCTTAACTAACGTTTTTT-----------------------GTTT-------------TGTT-------------------------------------------------------------------------------------------------------
droAna3 scaffold_13335:1859816-1859997 - GGTGTGTGTGCTCAGGTAGGGGTGT----------------ATGTGTGTGCGTAGGGGCGCGTGTTTGCGTAGGTGTGTGCT---------------------TTT-------------TGTATCT-----G--TGTG-------------------AAGTGTATCGAGTGTA------------------------------------------TTGAA--------CTCTTGCTGCATTTTTGCACAATTTCGACTTG---------------------------------------------------------TCTT-----------------------------------TTCTTTTT-ATATTCATTTC----------------------------------------------------------------------------TT--------TTAATTTTATTTTTT--A-----------TTTATTT--------------------------------------------------------------------------------------------------
droBip1 scf7180000396434:275106-275205 + TGTGAGAGTGTGTGCATGTGTGTGT----------------TTGTATATATATGTGTGTGTCAGTGTGTTTGTGTTTGTA-------------------------------------------------TGG--T----GGAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGGAAATAAGATAGTAAAAA----A------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------
droKik1 scf7180000302398:414012-414128 + TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------------------TG-------------TG--TATGTGTACGCATTA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAAAATATGTTTTGTTATCAATG----TTTTC-------------------------------------------------------------------------------------------------------------------------------------AAT-------------GCTT-------------------------------------------------------------------------------------------------------
droFic1 scf7180000454077:228513-228630 - TGTGTGTGTGTGTGTGTGTTTCTCT----------------CTCTCTTTCTGTGCGTGTATGTGTGGGTGTGTGTGTGGT-----------------------TCA-------------G-----------G--T--GG-------------------------------------------------AAAAGC---------GGCTAAAAAGCGGGGAAACGCGAAG-------------------------------------------------AAAAGCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTC------------------------------------------------------------------------------------------
droEle1 scf7180000490982:807510-807689 + TCAATGAGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTTTGTATT---------------------------------TCA-------------G-----------T--T--ATAAATTGG-----------AACC-----------A-----------G--------------------CCGAAAAAAGTTGAA--------CAGATGTCGTTTTCTTTACCAGTTATCGTT--------------GGAAGA------------------------------------------------------GAAATCTCATCTAAG-T-----------------------------------------------------------------------------------------------TGCTGTATTTACAAGGTG--------TGTTTTT--G-----------TTTGCCTCGCCC---------------------------------------------------------------------------------------------
droRho1 scf7180000778552:5178-5318 + G-CGTATGTGTGTATGTATGTAAGC----------------ATATACATATGTATGTATTTACAT---------------------------------------T--------------------------G--T----A--------------------------------------------CAC-AGTTGC---------AATTGTTT------------------------------------------------------------------------------------------AGCTGAGTAACGGGTATCTAATAGTCGAGG----CACTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTTTCTTGTTTTGTT--------TTATTT-------------TCTT-------------------------------------------------------------------------------------------------------
droBia1 scf7180000299898:36646-36766 - TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------TGG--TGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------GGGG-----------GGGAGG---------------GTTCGAACCCGTCTGAAAAATACGTTTCCTCGAGGTCTC------------------------------------
droTak1 scf7180000412666:10972-11162 - TGTCTGTCTGTCTGTCTGTCTGTCT----------------GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG-----------------------------------------------TCG--A----AATTAAA-----------AAGT-----------T----ATACGCAA---------TCAAAAAATTGTATATA----------------------T-CCATCTCCCT--------------------------------------------CGCACTGCCTTTAGCAGAGTAACGGGTATTAGATAGTCGGGGCACAAACCCGACTATAGC-----------------------------------------------------------------------------------------------GTTTTCTCTTG------------------------------------TT-------------------------------------------------------------------------------------------------------
droEug1 scf7180000409040:52234-52373 - TGTGTGTGTGTGTGGGAAAATGCGTCTAAGTGTGTTTGTTTGCATGCATGTGTGTGTATATCTGTGTGTGTGTGTGTGCGTGTATGGCCAGAGCGCCAATATGTAT-------------G-----------C--T--ATATATAGA-----------GAAA-----------A-----------C----------------------------------------------------------------------------------------------------------------------------TTAGGAGATCTTGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:8638799-8638909 - TGCGTACGTGTGTGCGCGAGTGTAT----------------CTGTGTGTGCGAATGTATCTGTGTGTGCGAGTGTGTGTC-----------------------TCA-------------TG--TTT-----G--CGC---AAATCGTTAGAGCG-------------------------------------------------------------AAGAG--TTGTGT-------------------------------------------------AAATATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------
droSim2 2r:8841766-8841887 - CAGGAAAGTAATGA-AATTTCGCGC----------------TCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCACTAGCTGAGTAAGGGGTATCTGATAGTCGGCG----AACTCGACAATAGC-----------------------------------------------------------------------------------------------TTTCTCTCTTGTTTTAAT--------ATCTCTTTGATTTTTGTTATCCA-------------------------------------------------------------------------------------------------------
droSec2 scaffold_10:2912021-2912124 + TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTG---------------------------------------------TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA--------------------------------------------------------------------------------------AC--------------AGGCGCAGTCGCTGT--GAAAGT---AGCAA----------------------------------------------------A-------------------------------------------------------------------------------------------------------
droYak3 v2_chr3L_random_067:5434-5570 + TACATACATATGCATATATACATAT----------------GTATGTATATGAATGCATATTTATT-----------------------------------------------------------------G--T----T--------------------------------------------------TTTT---------AAATAATC------------------------------------------------------------------------------------------TGCTGAGTAACGGGTATCTAATAGTCGGGG----AACTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTCTCTTATTAAATT--------TTCTCT-------------TATT-------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:9318743-9318933 + TGTATGTATGTATGTATGTATGTAT----------------GTATGTATGTATGTATGTATGTATGTATGTACATATGTATGTTTGG-----------------TC-------------A---------TA------ATCAGCAGC-----------AAGT-----------T----GCTACCGA---------AAA------------------CCAAA---CGAT-CTTTGGTCACCTTC---TGGAATTCCTGTTCGCCTGGTAATTTAAACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAATTTTGTCTCCA--A-----------ATTGTCTCGC-----------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGTATGCGTGTGTGTGTATGTATGC----------------CTGTGTTTGCGTACGTGCGTGTGTGTGTGTGTGCGTGTT-----------------------TCT-------------T-----------G--T--GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCGAAAAAGTATTG-------------------------------------------------AAATATCTATTGCT----------CCAAGGGTTCAGGGGATCTCGTAGTCGA---GCAGTCTCGACTAGAGC-----------------------------------------------------------------------------------------------TTTCTTACTTGTTATATT--------ATCTCTT--A-----------TTTGTCTCGCCCATGCAGGTTGTTGGCGCCAC-------------------------------------GGAGGAGGTGAACAGCGCCACTGAGATGCACGAGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................CTATTGCT----------CCAAGGGTTCAGG..........................................................................................................................................................................................................................................................................................21201.75353500000
.........................................................................................................T-------------T-----------G--T--GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCG...........................................................................................................................................................................................................................................................................................................................................................................................21200.153300000
...............................................................................T-----------------------TCT-------------T-----------G--T--GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCG...........................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
...............................................................................................................................................................................................................................................................................................................................TCGTAGTCGA---GCAGTCTCGACTAGAGC-----------------------------------------------------------------------------------------------........................................................................................................................................................27200.102200000
..................................................................................................................................................................................................................................................................................................................................................TCGACTAGAGC-----------------------------------------------------------------------------------------------TTTCTTACT...............................................................................................................................................20200.102200000
..............................................................................................................................................................................................................................................................................................TTGCT----------CCAAGGGTTCAGGGGA.......................................................................................................................................................................................................................................................................................21200.102000002
...................................................................................................................................................................................................................................................................................................................GTTCAGGGGATCTCGTAGTCGA---GCAG....................................................................................................................................................................................................................................................................26200.051000001
......................TGC----------------CTGTGTTTGCGTACGTGCGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................................................ATTG-------------------------------------------------AAATATCTATTGCT----------C......................................................................................................................................................................................................................................................................................................19200.051100000
............................................................................................................................................................................................................................................................................................TATTGCT----------CCAAGGGTTCAGGGGAT......................................................................................................................................................................................................................................................................................24200.051000010
.......................................................................................................................T-----------G--T--GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCGAA.........................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..............................................................................................................................................................................................................................................................................................TTGCT----------CCAAGGGTTCAGGGG........................................................................................................................................................................................................................................................................................20200.051000001
....................................................................TGTGTGCGTGTT-----------------------TCT-------------T-----------G--T--GTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................TCTCGACTAGAGC-----------------------------------------------------------------------------------------------TTTCTTACTTG.............................................................................................................................................24200.051000001
................................................TGCGTACGTGCGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..........TGTGTGTATGTATGC----------------CTGTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................................................................GTGCGTGTT-----------------------TCT-------------T-----------G--T--GTAAGCTGA-----------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
........................C----------------CTGTGTTTGCGTACGTGCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.........................................................................................................................................GTAAGCTGA-----------AAGT-----------C-----------------------------------------GCGAAA........................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droVir3
AGCGCG-GTGTTTCTATGCGTTTAT------------GC--GTGCGTGCGTGTGTGTGCATGTGTGAGTATGTGTGTGTA-----------------------TCT-------------G---------TAG--AAAG--AAG-----------------------------------------CAAGAATATT-----------TTTAAC------------------------GGCAGCTCGG--------------------------------------------CG----------CTGTGGGTTCAGGGTATCTTATAGTCGG---GCACTCACGGCCAGAGT-ACTATTAGTTGTATTTTGTTGGTTT----TTAAGTTTTTTGAC---------------------------------------------------TGCT--TTGGCTGAGGCA--------TGCTTAA--G-----------CTGG-------------------TGGCGCCAC-------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................TTTGAC---------------------------------------------------TGCT--TTGGCTGAGGCA--------TGCTT.........................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTTGTATTTTGTTGGTTT----TCG......................................................................................................................................................................................................................2140.251000000000000000000000000000000010000000000000000000000000000000
droGri2
TGTATGTATGTATGAATATTCACGT----------------GTTTGTCGGC-TGCGC---------------------TC-----------------------ACC-------------TT--TTG-----G--TGC---AAAACTTTTTAGAGGGAAATT-----------TTCCAACTTGAACTAGAATATT---------TGTTTAAC------------------------------------------------------------------------------------------AGCAGGGTTCAGGGTATATCGTAGTCGA---CCTCACTCGACTACAGTTACTGTTACTTGTTT-ATGTTCGTCTGTCGTGTA----------G-------------------------------------------------------------------------------------------CTTG-----------TCAATG------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGTATGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------TGG--TGTG--AGATAT-----------ATTT-----------C-----------------------------------------GA-CAAACATATGA-------------------------------------------------ATGTATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....TGTGTGTGTGTGTGTGTGTGT----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.25500005
............................................................TGTGTGTGTGTGTGTGTGTG-------------------------------------------------TGG--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
dp5
TCTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT-----------------------TTG-------------G-----------A--T--GTGTG--------------------------------------------------------------CCTGCAAGCAGTGCATACATATGT-------------------------------------------------ATGTGTTTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGTGTGTGTGTGTATGTATGCGTTT----------------GTGGGAGGGGTTATGTTTG---------------------------------------------GGGTGTATATGGGGTA--TATGTATGA--TTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGGCTCTCTTTCTAGGCTCAGTCGCAGTCTACAAATCTTAACTAACGTTTTTT-----------------------GTTT-------------TGTT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GGTGTGTGTGCTCAGGTAGGGGTGT----------------ATGTGTGTGCGTAGGGGCGCGTGTTTGCGTAGGTGTGTGCT---------------------TTT-------------TGTATCT-----G--TGTG-------------------AAGTGTATCGAGTGTA------------------------------------------TTGAA--------CTCTTGCTGCATTTTTGCACAATTTCGACTTG---------------------------------------------------------TCTT-----------------------------------TTCTTTTT-ATATTCATTTC----------------------------------------------------------------------------TT--------TTAATTTTATTTTTT--A-----------TTTATTT--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGTGAGAGTGTGTGCATGTGTGTGT----------------TTGTATATATATGTGTGTGTCAGTGTGTTTGTGTTTGTA-------------------------------------------------TGG--T----GGAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGGAAATAAGATAGTAAAAA----A------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-----------------------------TG-------------TG--TATGTGTACGCATTA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAAAATATGTTTTGTTATCAATG----TTTTC-------------------------------------------------------------------------------------------------------------------------------------AAT-------------GCTT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGTGTGTGTGTGTGTGTGTTTCTCT----------------CTCTCTTTCTGTGCGTGTATGTGTGGGTGTGTGTGTGGT-----------------------TCA-------------G-----------G--T--GG-------------------------------------------------AAAAGC---------GGCTAAAAAGCGGGGAAACGCGAAG-------------------------------------------------AAAAGCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTC------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCAATGAGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTTTGTATT---------------------------------TCA-------------G-----------T--T--ATAAATTGG-----------AACC-----------A-----------G--------------------CCGAAAAAAGTTGAA--------CAGATGTCGTTTTCTTTACCAGTTATCGTT--------------GGAAGA------------------------------------------------------GAAATCTCATCTAAG-T-----------------------------------------------------------------------------------------------TGCTGTATTTACAAGGTG--------TGTTTTT--G-----------TTTGCCTCGCCC---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-CGTATGTGTGTATGTATGTAAGC----------------ATATACATATGTATGTATTTACAT---------------------------------------T--------------------------G--T----A--------------------------------------------CAC-AGTTGC---------AATTGTTT------------------------------------------------------------------------------------------AGCTGAGTAACGGGTATCTAATAGTCGAGG----CACTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTTTCTTGTTTTGTT--------TTATTT-------------TCTT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------TGG--TGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------GGGG-----------GGGAGG---------------GTTCGAACCCGTCTGAAAAATACGTTTCCTCGAGGTCTC------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTCTGTCTGTCTGTCTGTCTGTCT----------------GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG-----------------------------------------------TCG--A----AATTAAA-----------AAGT-----------T----ATACGCAA---------TCAAAAAATTGTATATA----------------------T-CCATCTCCCT--------------------------------------------CGCACTGCCTTTAGCAGAGTAACGGGTATTAGATAGTCGGGGCACAAACCCGACTATAGC-----------------------------------------------------------------------------------------------GTTTTCTCTTG------------------------------------TT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGTGTGTGTGTGTGGGAAAATGCGTCTAAGTGTGTTTGTTTGCATGCATGTGTGTGTATATCTGTGTGTGTGTGTGTGCGTGTATGGCCAGAGCGCCAATATGTAT-------------G-----------C--T--ATATATAGA-----------GAAA-----------A-----------C----------------------------------------------------------------------------------------------------------------------------TTAGGAGATCTTGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGCGTACGTGTGTGCGCGAGTGTAT----------------CTGTGTGTGCGAATGTATCTGTGTGTGCGAGTGTGTGTC-----------------------TCA-------------TG--TTT-----G--CGC---AAATCGTTAGAGCG-------------------------------------------------------------AAGAG--TTGTGT-------------------------------------------------AAATATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................ATCGTTAGAGCG-------------------------------------------------------------AAGAG--TTGTG.................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GTTAGAGCG-------------------------------------------------------------AAGAG--TTGA..................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCTGTGTGTGCGAGTGTGTGTC-----------------------TCA-------------TG--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................GTATCTGTGTGTGCGAGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................TGTGTGTGCGAGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
droSim2
CAGGAAAGTAATGA-AATTTCGCGC----------------TCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCACTAGCTGAGTAAGGGGTATCTGATAGTCGGCG----AACTCGACAATAGC-----------------------------------------------------------------------------------------------TTTCTCTCTTGTTTTAAT--------ATCTCTTTGATTTTTGTTATCCA-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGCG----AACT.................................................................................................................................................................................................................................................................20130.8511000011000000000000
..........................................................................................................................................................................................................................................................................................................ACTAGCTGAGTAAGGGGTATCTGAT.................................................................................................................................................................................................................................................................................2590.22200000000200000000
...........................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGCG----AACTCGA..............................................................................................................................................................................................................................................................23110.18200000000002000000
........................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGCG----AACT.................................................................................................................................................................................................................................................................2380.13100000000010000000
................................................................................................................................................................................................................................................................................................................TGAGTAAGGGGTATCTGATAGTCG............................................................................................................................................................................................................................................................................2480.13100000000100000000
............................................................................................................................................................................................................................................................................................................TAGCTGAGTAAGGGGTATCTGATAG...............................................................................................................................................................................................................................................................................2590.11100000000001000000
.............................................................................................................................................................................................................................................................................................................AGCTGAGTAAGGGGTATCTGATAGT..............................................................................................................................................................................................................................................................................25100.10100000000000010000
.............................................................................................................................................................................................................................................................................................................................TCTGATAGTCGGCG----AACTCG...............................................................................................................................................................................................................................................................20110.09100000001000000000
............................................................................................................................................................................................................................................................................................................................ATCTGATAGTCGGCG----AACTCGAC.............................................................................................................................................................................................................................................................23110.09101000000000000000
..........................................................................................................................................................................................................................................................................................................................GTATCTGATAGTCGGCG----AACTCGA..............................................................................................................................................................................................................................................................24110.09100000001000000000
.............................................................................................................................................................................................................................................................................................................................TCTGATAGTCGGCG----AACTCGA..............................................................................................................................................................................................................................................................21110.09100000001000000000
............................................................................................................................................................................................................................................................................................................TAGCTGAGTAAGGGGTATCTG...................................................................................................................................................................................................................................................................................21120.08100000000001000000
............................................................................................................................................................................................................................................................................................................TAGCTGAGTAAGGGGTATCT....................................................................................................................................................................................................................................................................................20120.08100000000100000000
...............................................................................................................................................................................................................................................................................................................................TGATAGTCGGCG----AACTCGAC.............................................................................................................................................................................................................................................................20120.08110000000000000000
..............................................................................................................................................................................................................................................................................................................GCTGAGTAAGGGGTATCTG...................................................................................................................................................................................................................................................................................19150.07100000000001000000
................................................................................................................................................................................................................................................................................................................TGAGTAAGGGGTATCTGA..................................................................................................................................................................................................................................................................................18180.06100000000001000000
.........................................................................................................................................................................................................................................................................................................................GGTATCTGATAGTCGGC..........................................................................................................................................................................................................................................................................17190.05100000000001000000
droSec2
TGTGTGTGTGTGTGTGTGTGTGTGT----------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTG---------------------------------------------TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA--------------------------------------------------------------------------------------AC--------------AGGCGCAGTCGCTGT--GAAAGT---AGCAA----------------------------------------------------A-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................GTGTGTGTGTGTGTGTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
.............................................GTGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
...................GTGTGT----------------GTGTGTGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.GTGTGTGTGTGTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
....................TGTGT----------------GTGTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...GTGTGTGTGTGTGTGTGTGTGT----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
..............TGTGTGTGTGT----------------GTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.....................GTGT----------------GTGTGTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
........................T----------------GTGTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.......GTGTGTGTGTGTGTGTGT----------------GTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
......................TGT----------------GTGTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.................GTGTGTGT----------------GTGTGTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
..................TGTGTGT----------------GTGTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.....GTGTGTGTGTGTGTGTGTGT----------------GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
................TGTGTGTGT----------------GTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.........................................GTGTGTGTGTGTGTGTGTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.......................GT----------------GTGTGTGTGTGTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
............TGTGTGTGTGTGT----------------GTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
..........................................TGTGTGTGTGTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.....................................................GTGTGTGTGTGTGTGTGTATGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610100
............................................................TGTGTGTGTGTATGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
droYak3
TACATACATATGCATATATACATAT----------------GTATGTATATGAATGCATATTTATT-----------------------------------------------------------------G--T----T--------------------------------------------------TTTT---------AAATAATC------------------------------------------------------------------------------------------TGCTGAGTAACGGGTATCTAATAGTCGGGG----AACTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTCTCTTATTAAATT--------TTCTCT-------------TATT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................CGGGG----AACTCGACTATAGC-----------------------------------------------------------------------------------------------GT......................................................................................................................................................21200.5010000000100000
..................................................................................................................................................................................................................................................................................................................................................TCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTCTCTTATT...........................................................................................................................................24200.10202000000000
.................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTCTCTTATT...........................................................................................................................................25200.10201000100000
..........................................................................................................................................................................................................................................................................................................................................G----AACTCGACTATAGC-----------------------------------------------------------------------------------------------GTTCTCTCTTA.............................................................................................................................................26200.05100100000000
..................................................................................................................................................................................................................................................................................................................AGTAACGGGTATCTAATAGTCGGG..........................................................................................................................................................................................................................................................................24200.05101000000000
.................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTAATAGTCGGGG----.....................................................................................................................................................................................................................................................................26200.05101000000000
droEre2
TGTATGTATGTATGTATGTATGTAT----------------GTATGTATGTATGTATGTATGTATGTATGTACATATGTATGTTTGG-----------------TC-------------A---------TA------ATCAGCAGC-----------AAGT-----------T----GCTACCGA---------AAA------------------CCAAA---CGAT-CTTTGGTCACCTTC---TGGAATTCCTGTTCGCCTGGTAATTTAAACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAATTTTGTCTCCA--A-----------ATTGTCTCGC-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................ACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAATTTTG.............................................................................................................................22200.1020000020
....................................................TGTATGTATGTATGTATGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1022000000
................................................................................................................................................................................................................................................................................AACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAATTTTGT............................................................................................................................24170.0610000100
.........................................................................................................................................................................................................................................GTCACCTTC---TGGAATTCCTGT...................................................................................................................................................................................................................................................................................................................................................21200.0510000100
............................................................................................................................................................................................................................................................................TTTAAACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAA..................................................................................................................................22200.0511000000
................................................................................................................................................................................................................................................................TTCGCCTGGTAATTTAAACCG...............................................................................................................................................................................................................................................................................................................................21200.0510100000
.........................................................................................................................................................................................................................................................................TAATTTAAACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------AC....................................................................................................................................23200.0510100000
..............................................................................................................................................................................................................................................................TGTTCGCCTGGTAATTTAAACCG...............................................................................................................................................................................................................................................................................................................................23200.0511000000
.................................................................................................................................TA------ATCAGCAGC-----------AAGT-----------T----GCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
................................................................................................................................................................................................................................................................TTCGCCTGGTAATTTAAACCGA------------------------------------------------------........................................................................................................................................................................................................................................................................22200.0511000000
.........................................................................................................................................................................................................................................................................TAATTTAAACCGA------------------------------------------------------AAAATC------------------------------------------------------------------------------------------------------------------TC--------ACAAT.................................................................................................................................26200.0511000000

Generated: 05/17/2015 at 11:22 PM