dmo_9

TTTAAGTGCAATAAGTGTTTAAGTTATTTATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTGTTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAACAGAAATAAGCTGCATAGTGCAAAAGGATATA *********************************...(((.(((((((((((((.((((..((((.(((.(((......(((...)))....))))))))))..)))).)))))))))))))..)))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V110 male body	V049 head	M046 female body	M060 embryo	V041 embryo
...............................................................................................TAGCTGCCTTGTGAAGGGCTT...................................................	21	0	1	22356.00	22356	6909	8158	4680	1310	450	849
...............................................................................................TAGCTGCCTTGTGAAGGGCTTA..................................................	22	0	1	2645.00	2645	967	341	627	317	262	131
...............................................................................................TAGCTGCCTTGTGAAGGGCT....................................................	20	0	1	591.00	591	214	30	156	163	23	5
...............................................................................................TAGCTGCCTTGTGAAGGGCTTC..................................................	22	1	1	272.00	272	50	87	46	85	3	1
...............................................................................................TAGCTGCCTTGTGAAGGGCTC...................................................	21	1	1	215.00	215	48	79	27	24	37	0
..............................................................................................CTAGCTGCCTTGTGAAGGGCTT...................................................	22	0	1	192.00	192	25	37	18	15	42	55
...............................................................................................TAGCTGCCTTGTGAGGGGCTT...................................................	21	1	1	139.00	139	66	12	54	2	0	5
...............................................................................................TAGCTGCCTTGTGAAGGGCTTT..................................................	22	1	1	139.00	139	27	32	30	42	5	3
...............................................................................................TAGCTGCCTTGTGACGGGCTT...................................................	21	1	1	135.00	135	37	0	92	0	1	5
..................................................AGTCCCTCATTTGGTGCGCTTAGC.............................................................................................	24	0	1	135.00	135	1	0	0	9	109	16
...............................................................................................TAGCTGCCTTGTGCAGGGCTT...................................................	21	1	1	114.00	114	31	0	80	0	0	3
................................................................................................AGCTGCCTTGTGAAGGGCTT...................................................	20	0	1	85.00	85	10	5	2	62	5	1
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAG.................................................	23	1	1	81.00	81	23	27	21	5	1	4
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAA.................................................	23	1	1	75.00	75	9	8	4	49	3	2
...............................................................................................TAGCTGCCTTGTGAAGTGCTT...................................................	21	1	1	73.00	73	29	9	32	0	3	0
...............................................................................................TAACTGCCTTGTGAAGGGCTT...................................................	21	1	1	68.00	68	25	27	14	0	0	2
...............................................................................................TAGCTGCCTTGCGAAGGGCTT...................................................	21	1	1	60.00	60	24	5	23	3	1	4
...............................................................................................TAGCTGCCTTGTGAAGGGC.....................................................	19	0	1	59.00	59	20	3	12	17	7	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAT.................................................	23	1	1	56.00	56	9	9	7	26	4	1
...............................................................................................TAGCTGCCTTGTTAAGGGCTT...................................................	21	1	1	55.00	55	16	0	38	1	0	0
...............................................................................................TACCTGCCTTGTGAAGGGCTT...................................................	21	1	1	53.00	53	3	24	4	0	22	0
...............................................................................................TATCTGCCTTGTGAAGGGCTT...................................................	21	1	1	47.00	47	2	36	4	2	2	1
...............................................................................................TAGCTGCCTTGTGAAGGGCTTG..................................................	22	1	1	47.00	47	15	11	15	5	0	1
...............................................................................................TAGCTGCCTTGTGAAGGG......................................................	18	0	1	43.00	43	21	3	11	8	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCCT...................................................	21	1	1	39.00	39	17	6	16	0	0	0
...............................................................................................TAGCTGACTTGTGAAGGGCTT...................................................	21	1	1	36.00	36	19	4	11	0	0	2
...............................................................................................TAGCTGCCTTGTGAAGGTCTT...................................................	21	1	1	36.00	36	14	8	14	0	0	0
...............................................................................................TAGCTGCCTTGTGAATGGCTT...................................................	21	1	1	34.00	34	7	11	16	0	0	0
...............................................................................................TAGCTGCCTTGGGAAGGGCTT...................................................	21	1	1	33.00	33	20	2	7	4	0	0
...............................................................................................TGGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	32.00	32	6	0	9	0	17	0
...............................................................................................TAGCTGCCTTGTGAAGCGCTT...................................................	21	1	1	30.00	30	16	0	13	0	0	1
...............................................................................................TAGCTGCCTGGTGAAGGGCTT...................................................	21	1	1	30.00	30	19	0	11	0	0	0
...............................................................................................TAGCTGCCTTGTGTAGGGCTT...................................................	21	1	1	26.00	26	15	1	5	0	0	5
...............................................................................................TAGCCGCCTTGTGAAGGGCTT...................................................	21	1	1	26.00	26	16	4	6	0	0	0
...............................................................................................TAGCTGCCTTGTGGAGGGCTT...................................................	21	1	1	25.00	25	13	0	9	0	0	3
................................................................................................AGCTGCCTTGTGAAGGGCTTA..................................................	21	0	1	25.00	25	2	0	0	23	0	0
...............................................................................................TAGCTGCCTTGTGAACGGCTT...................................................	21	1	1	25.00	25	10	2	13	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGATT...................................................	21	1	1	25.00	25	14	5	3	1	0	2
...............................................................................................TAGCTGCCCTGTGAAGGGCTT...................................................	21	1	1	23.00	23	11	2	9	0	0	1
..............................................................................................CTAGCTGCCTTGTGAAGGGCT....................................................	21	0	1	23.00	23	11	2	5	1	2	2
...............................................................................................TAGCTGCCTTGTGAGGGGCTTA..................................................	22	1	1	22.00	22	13	2	7	0	0	0
...............................................................................................TGGCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	21.00	21	0	0	1	0	20	0
...............................................................................................CAGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	21.00	21	6	2	11	1	0	1
...............................................................................................TAGTTGCCTTGTGAAGGGCTT...................................................	21	1	1	21.00	21	3	1	3	1	13	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTC.................................................	23	1	1	21.00	21	8	4	3	6	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTA...................................................	21	1	1	21.00	21	11	5	5	0	0	0
...............................................................................................TAGCTGCCTTGTCAAGGGCTT...................................................	21	1	1	20.00	20	7	4	8	0	1	0
...............................................................................................TAGCTGCCTTGTGAAGGGTTT...................................................	21	1	1	20.00	20	5	8	4	0	1	2
...............................................................................................TAGCTGCCTTGTGAAAGGCTT...................................................	21	1	1	20.00	20	4	7	8	0	0	1
...............................................................................................TAGCTGCCTCGTGAAGGGCTT...................................................	21	1	1	19.00	19	7	5	6	0	0	1
..................................................ATTCCCTCATTTGGTGCGCTTAGC.............................................................................................	24	1	1	19.00	19	0	0	0	0	19	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATC................................................	24	2	1	18.00	18	5	1	4	8	0	0
...............................................................................................TAGCTGCATTGTGAAGGGCTT...................................................	21	1	1	18.00	18	9	2	4	0	1	2
...............................................................................................TAGCTTCCTTGTGAAGGGCTT...................................................	21	1	1	17.00	17	3	6	3	1	4	0
...............................................................................................TAGCTGCCTTGTGATGGGCTT...................................................	21	1	1	17.00	17	8	1	7	0	0	1
...............................................................................................TAGCTGCCTTATGAAGGGCTT...................................................	21	1	1	16.00	16	4	2	6	1	0	3
...............................................................................................TAGCTGCCTTGTGAAGTGCTTA..................................................	22	1	1	16.00	16	5	1	3	0	7	0
...............................................................................................TAGCAGCCTTGTGAAGGGCTT...................................................	21	1	1	15.00	15	7	1	6	0	0	1
...............................................................................................TAGCGGCCTTGTGAAGGGCTT...................................................	21	1	1	15.00	15	10	0	4	0	1	0
...............................................................................................TAGCTGCCTTGTGAAGAGCTT...................................................	21	1	1	14.00	14	4	4	6	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGACTT...................................................	21	1	1	14.00	14	6	3	2	1	1	1
...............................................................................................TAGCTGCCTTGTGAAGGGCGT...................................................	21	1	1	14.00	14	3	4	5	0	0	2
...............................................................................................TAGCTACCTTGTGAAGGGCTT...................................................	21	1	1	14.00	14	2	6	5	0	0	1
...............................................................................................TAGCTGCCTTGTAAAGGGCTT...................................................	21	1	1	14.00	14	4	3	6	0	0	1
...............................................................................................TAGCTGCCTTGTGAAGGGGTT...................................................	21	1	1	14.00	14	5	1	6	0	0	2
...............................................................................................TAGCTGCCTTGTTAAGTGCTT...................................................	21	2	1	14.00	14	5	0	9	0	0	0
...............................................................................................TAGCTGCCTTTTGAAGGGCTT...................................................	21	1	1	13.00	13	6	4	2	1	0	0
.................................................................................................GCTGCCTTGTGAAGGGCTT...................................................	19	0	1	13.00	13	4	0	2	5	2	0
...............................................................................................TAGCTGCGTTGTGAAGGGCTT...................................................	21	1	1	13.00	13	10	0	3	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCTTA..................................................	22	1	1	13.00	13	4	0	9	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCT....................................................	19	0	1	13.00	13	0	0	0	13	0	0
...............................................................................................TAGCTGCCTTGTGCAGGGCTTA..................................................	22	1	1	13.00	13	6	0	6	0	0	1
...............................................................................................TAGCTGCCTTGTGAAGGCCTT...................................................	21	1	1	12.00	12	7	2	3	0	0	0
...............................................................................................AAGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	12.00	12	2	0	7	0	3	0
...............................................................................................TACCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	12.00	12	0	0	1	0	11	0
...............................................................................................GAGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	12.00	12	3	1	7	0	1	0
...............................................................................................TAGATGCCTTGTGAAGGGCTT...................................................	21	1	1	12.00	12	6	1	5	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTG...................................................	21	1	1	11.00	11	3	4	4	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATCC...............................................	25	3	1	11.00	11	2	1	1	7	0	0
..................................................AGCCCCTCATTTGGTGCGCTTAGC.............................................................................................	24	1	1	11.00	11	0	0	0	0	11	0
...............................................................................................TAGCTGCCTTGCGAAGGGCTTA..................................................	22	1	1	10.00	10	2	0	6	1	1	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAC.................................................	23	0	1	9.00	9	3	1	3	1	1	0
...................................................GTCCCTCATTTGGTGCGCTTAGCT............................................................................................	24	0	1	9.00	9	1	0	0	1	3	4
................................................................................................AGCTGCCTTGTGAAGGGCTTC..................................................	21	1	1	9.00	9	0	0	0	9	0	0
...............................................................................................TAGCTCCCTTGTGAAGGGCTT...................................................	21	1	1	9.00	9	5	2	1	0	0	1
..............................................................................................CTAGCTGCCTTGTGAAGGGCTTA..................................................	23	0	1	8.00	8	0	0	1	1	5	1
...............................................................................................TAGCTGGCTTGTGAAGGGCTT...................................................	21	1	1	8.00	8	3	2	1	0	2	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTTC................................................	24	3	1	8.00	8	1	4	1	2	0	0
...............................................................................................TAGCTGCTTTGTGAAGGGCTT...................................................	21	1	1	8.00	8	7	1	0	0	0	0
...............................................................................................TAGCTGCCTTGAGAAGGGCTT...................................................	21	1	1	8.00	8	3	1	1	3	0	0
..................................................AGTCCCTCATTTGGTGCGCTTAG..............................................................................................	23	0	1	7.00	7	0	0	0	4	1	2
...............................................................................................TAGCTGCCTTGTTAAGGGCTTA..................................................	22	1	1	7.00	7	2	1	4	0	0	0
..................................................AGTTCCTCATTTGGTGCGCTTAGC.............................................................................................	24	1	1	7.00	7	0	0	0	0	7	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTCT..................................................	22	2	1	7.00	7	2	0	0	5	0	0
...............................................................................................TAGCTGCCTTGTGACGTGCTT...................................................	21	2	1	7.00	7	3	0	2	0	0	2
...............................................................................................TAGCTGCCTTGGGAAGGGCTTA..................................................	22	1	1	6.00	6	4	0	1	1	0	0
...............................................................................................TAGCTGCCTTCTGAAGGGCTT...................................................	21	1	1	6.00	6	3	2	1	0	0	0
...............................................................................................TCGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	6.00	6	2	1	3	0	0	0
...............................................................................................TAGCTGCCTTGTGCCGGGCTT...................................................	21	2	2	5.50	11	0	0	11	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTCA..................................................	22	1	1	5.00	5	3	0	0	2	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTCT.................................................	23	2	1	5.00	5	1	1	1	2	0	0
...............................................................................................TAGCGGCCTTGGGAAGGGCTT...................................................	21	2	1	5.00	5	1	0	4	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGCGCTTA..................................................	22	1	1	5.00	5	0	0	2	0	3	0
...............................................................................................TAGCTGCCGTGTGAAGGGCTT...................................................	21	1	1	5.00	5	4	1	0	0	0	0
...............................................................................................TATCTGCCTTGTGAAGCGCTT...................................................	21	2	1	5.00	5	1	0	4	0	0	0
...............................................................................................TAACTGCCTTGGGAAGGGCTT...................................................	21	2	1	5.00	5	4	0	1	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTAT.................................................	22	1	1	5.00	5	0	0	0	5	0	0
...............................................................................................TAGCTGCCTTGTGAATGGCTTA..................................................	22	1	1	5.00	5	1	0	3	0	0	1
..................................................................................................CTGCCTTGTGAAGGGCTT...................................................	18	0	1	5.00	5	0	0	0	4	0	1
...............................................................................................TAGCTGCCTTGTTAACGGCTT...................................................	21	2	1	4.00	4	2	0	2	0	0	0
.............................................................................................TCTAGCTGCCTTGTGAAGGGCTT...................................................	23	1	1	4.00	4	1	1	0	1	1	0
..................................................TTTCCCTCATTTGGTGCGCTTAGC.............................................................................................	24	2	1	4.00	4	0	0	0	0	4	0
..................................................AGTCCCTCATTTGGTGCGCTTAGCT............................................................................................	25	0	1	4.00	4	0	0	0	0	3	1
...............................................................................................TAGCTGCCTTGTTCAGGGCTT...................................................	21	2	1	4.00	4	2	0	1	0	0	1
..............................................................................................CTAGCTGCCTTGTGAAGGGCTC...................................................	22	1	1	4.00	4	0	0	1	0	3	0
...............................................................................................TAGCTGCCTTGTGGCGGGCTT...................................................	21	2	1	4.00	4	1	0	2	0	0	1
...............................................................................................TAGCTGCCTTGTGCAGCGCTT...................................................	21	2	2	4.00	8	4	0	4	0	0	0
...............................................................................................TAGCTGCCTTGTCAAGGGCTTA..................................................	22	1	1	4.00	4	3	0	1	0	0	0
...............................................................................................TGGCTGCCTTGTGAAGGGCTC...................................................	21	2	1	4.00	4	0	0	0	0	4	0
...............................................................................................TAGCTGCCTGGTGAAGGGGTT...................................................	21	2	1	4.00	4	4	0	0	0	0	0
...............................................................................................TAGCTGCCTTGGGAGGGGCTT...................................................	21	2	1	4.00	4	3	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGA.....................................................	19	1	1	4.00	4	2	2	0	0	0	0
..............................................................................................GTAGCTGCCTTGTGAAGGGCTT...................................................	22	1	1	4.00	4	0	0	0	4	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCC....................................................	20	1	1	4.00	4	0	0	0	1	3	0
...............................................................................................TAGCTACCTTGTGAAGGGCTTA..................................................	22	1	1	4.00	4	2	1	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATT................................................	24	2	1	4.00	4	0	1	1	1	1	0
...............................................................................................TAGTTGCCTTGTGAAGGGCTTA..................................................	22	1	1	4.00	4	0	0	0	0	4	0
...............................................................................................TAGCTGTCTTGTGAAGGGCTT...................................................	21	1	1	4.00	4	1	2	1	0	0	0
..............................................................................................CGAGCTGCCTTGTGAAGGGCTT...................................................	22	1	1	4.00	4	0	0	0	0	4	0
...............................................................................................TAGCCGCCTTGTGAAGGGCTTA..................................................	22	1	1	4.00	4	2	0	0	1	0	1
.................................................................................................GCTGCCTTGTGAAGGGCTTA..................................................	20	0	1	4.00	4	0	0	0	2	1	1
...............................................................................................TAGATGCATTGTGAAGGGCTT...................................................	21	2	1	4.00	4	2	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGTCTTA..................................................	22	1	1	4.00	4	1	0	2	0	1	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTCC................................................	24	2	1	4.00	4	0	1	0	3	0	0
...............................................................................................TAACTGCCTTCTGAAGGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
..............................................................................................CTAGCTGCCTTGTGAAGGGCTTT..................................................	23	1	1	3.00	3	0	0	0	0	3	0
...............................................................................................TAACTGCATTGTGAAGGGCTT...................................................	21	2	1	3.00	3	1	0	2	0	0	0
...............................................................................................TAGCTGCATTGTGAAGGGCTTA..................................................	22	1	1	3.00	3	0	0	1	0	2	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAAA................................................	24	2	1	3.00	3	2	1	0	0	0	0
...............................................................................................TATCTGCCTTGTGCAGGGCTT...................................................	21	2	1	3.00	3	1	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCAT...................................................	21	1	1	3.00	3	1	0	1	0	0	1
...............................................................................................TAGCGGCCTTGTGAGGGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAACTGCCTTGTGAAGTGCTT...................................................	21	2	1	3.00	3	1	0	2	0	0	0
...............................................................................................TAGCTGCCTCGTGAAGGGCTTA..................................................	22	1	1	3.00	3	2	0	0	0	0	1
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTA.................................................	23	2	1	3.00	3	1	1	1	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGTCTT...................................................	21	2	1	3.00	3	3	0	0	0	0	0
...................................................GTCCCTCATTTGGTGCGCTTAGC.............................................................................................	23	0	1	3.00	3	0	0	0	2	1	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTCG.................................................	23	2	1	3.00	3	0	0	3	0	0	0
...............................................................................................CAGCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTT.................................................	23	2	1	3.00	3	2	1	0	0	0	0
...............................................................................................TAGCAGCCTGGTGAAGGGCTT...................................................	21	2	1	3.00	3	3	0	0	0	0	0
...............................................................................................TAGCTGCGTGGTGAAGGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGCGACGGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAGCTGACTTGTGATGGGCTT...................................................	21	2	1	3.00	3	3	0	0	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTT..................................................	21	1	1	3.00	3	0	0	0	3	0	0
...............................................................................................TAGCTGCCTTGCGAAGGGCT....................................................	20	1	1	3.00	3	2	0	0	1	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTTG.................................................	23	2	1	3.00	3	2	0	1	0	0	0
..................................................................................................CTGCCTTGTGAAGGGCTTA..................................................	19	0	1	3.00	3	0	0	0	1	2	0
...............................................................................................TAGCTGCCTTGTGAACGTCTT...................................................	21	2	1	3.00	3	1	0	1	0	0	1
...............................................................................................TAGCTGCCTTGTGGAGGGCTTT..................................................	22	2	1	3.00	3	0	0	3	0	0	0
...............................................................................................TAGCTGCCTTGTGAATGGCT....................................................	20	1	1	3.00	3	0	0	3	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGTTTA..................................................	22	1	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCCTGTGAAGGGCTTA..................................................	22	1	1	3.00	3	2	0	1	0	0	0
..................................................ATTTCCTCATTTGGTGCGCTTAGC.............................................................................................	24	2	1	3.00	3	0	0	0	0	3	0
...............................................................................................TAGCGGCCGTGTGAAGGGCTT...................................................	21	2	1	3.00	3	3	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCT....................................................	20	1	1	3.00	3	1	0	2	0	0	0
...............................................................................................TAGCTGCCTGGTGAACGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
...............................................................................................CAGCTGACTTGTGAAGGGCTT...................................................	21	2	1	3.00	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGCGCAGGGCTT...................................................	21	2	1	3.00	3	1	0	2	0	0	0
..................................................TGTCCCTCATTTGGTGCGCTTAGC.............................................................................................	24	1	1	3.00	3	0	0	0	0	3	0
...........................................................................................GATCTAGCTGCCTTGTGAAGGGCTT...................................................	25	3	1	3.00	3	1	0	0	0	2	0
...............................................................................................TAGCTGCCTTGCGAAGCGCTT...................................................	21	2	1	3.00	3	1	0	2	0	0	0
..................................................AGTCCCTCATTTGGTGCGCTTAGCC............................................................................................	25	1	1	3.00	3	0	0	0	1	2	0
...............................................................................................TACCTGCCTTGTGAAGGGCTC...................................................	21	2	1	3.00	3	0	0	0	0	3	0
...............................................................................................TAGCTGCCTTGTGAGGGGCT....................................................	20	1	1	3.00	3	2	0	1	0	0	0
............................................................................................ATCTAGCTGCCTTGTGAAGGGCTT...................................................	24	2	1	2.00	2	1	0	0	0	1	0
...............................................................................................TAGCTGCCTTGCTAAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAACGGGTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATTTC..............................................	26	3	1	2.00	2	0	1	0	0	1	0
...............................................................................................TAGCTCCCTTGTGAACGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTG..................................................	21	1	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAACTGCCTTGTGTAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TACCTGCCTTGTGAAGCGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTAA.................................................	22	1	1	2.00	2	0	0	0	2	0	0
..............................................................................................CTAGCTGCCTTGTGAAGGGCTTC..................................................	23	1	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCTTG..................................................	22	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTTAATGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAACTGCCTTGTGAAGGGATT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
.................................................................................................GCTGCCTTGTGAAGGGCTC...................................................	19	1	1	2.00	2	0	0	0	1	1	0
...............................................................................................TAGCTGACTTGTGAAGGGCGTA..................................................	22	2	1	2.00	2	0	0	0	0	0	2
...............................................................................................TAACTGACTTGTGAAGGGCTT...................................................	21	2	1	2.00	2	1	0	0	0	0	1
...............................................................................................TAGCTGCCTTGTGACGGGCTTAT.................................................	23	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAACTGCCTTGTGAAAGGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
..............................................................................................CTAGCTGCCTTGTGCAGGGCTT...................................................	22	1	1	2.00	2	0	0	0	0	0	2
...............................................................................................TAGCTGCCTTTTGAAGGTCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGACTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	1	0	0	0	0	1
...............................................................................................TAGCGCCCTTGTGAAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGGGAAGGGATT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTGGTGCAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCGGCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TCGCTGCCTTGTGACGGGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGTAGTGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTAAAGGGCTTA..................................................	22	1	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAACTGTCTTGTGAAGGGCTT...................................................	21	2	1	2.00	2	0	0	1	0	0	1
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATCTC..............................................	26	3	1	2.00	2	0	0	1	1	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTATCC...............................................	24	3	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAGCAGCCTTGTGAACGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TGGCTGCCTGGTGAAGGGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAACTGCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	0	0	2	0	0	0
...............................................................................................CAGCTGCCTTGGGAAGGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCATTGTGAAGGGCGT...................................................	21	2	1	2.00	2	1	0	0	0	0	1
...............................................................................................TAGATGCCTTGTGAAGAGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TGGCTGCCTTGTGAAGGTCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGAGGGTCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TGGTTGCCTTGTGAAGGGCTT...................................................	21	2	1	2.00	2	0	0	0	0	2	0
...............................................................................................TAGCTCCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	1	1	0	0	0	0
...............................................................................................TAGCTGACTTGTGCAGGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................AAGCTGCCTTGCGAAGGGCTTA..................................................	22	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TGGCTGCCTTGTGAAGGGCT....................................................	20	1	1	2.00	2	0	0	0	0	2	0
...............................................................................................TAGCTGCCTTGTGAACTGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCTTTGTGACGGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCGTTGTGCAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAATGTCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCATTGTGAAGGGTTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGGGAAGGGCT....................................................	20	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAACTCCCTTGTGAAGGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCATTGTGAAGGCCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGATTA..................................................	22	1	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCAGCCTTGGGAAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAGGCGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTACT................................................	24	1	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCATGTGAAGGGCTT...................................................	21	1	1	2.00	2	1	1	0	0	0	0
...............................................................................................TAGCTGCCTTGCGAAGAGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAACTGCCTTGTGAAGAGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTCTGCAGGGCTT...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCTTC..................................................	22	2	1	2.00	2	1	0	1	0	0	0
..............................................................................................ATAGCTGCCTTGTGAAGGGCTT...................................................	22	1	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAGCTGCCTTGTGGAGGGCTTA..................................................	22	1	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGATTC..................................................	22	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAACTGCCTTGTGAAGGGCTTC..................................................	22	2	1	2.00	2	0	1	1	0	0	0
...............................................................................................TAGCAGCCTTGTGAAGGGGTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TTGCTGCCTTGTGAAGGGCTT...................................................	21	1	1	2.00	2	0	0	0	0	2	0
....................................................TCCCTCATTTGGTGCGCTTAGCC............................................................................................	23	1	1	2.00	2	0	0	0	0	2	0
...............................................................................................TAGCTGCCTGGTGAAGGGC.....................................................	19	1	1	2.00	2	1	0	1	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTC...................................................	20	1	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAGCTGCCTGGTGAAGGGCT....................................................	20	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TCGCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCTC...................................................	21	2	1	2.00	2	1	0	0	0	0	1
...............................................................................................TAGCTGCCTTGTGAAGGGGTTA..................................................	22	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAACGGCTTA..................................................	22	1	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGCAGGGCT....................................................	20	1	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGCTGCCTTGGGGAGGGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGGCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGTGCTTT..................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................AGCTGCCTTGTGAAGGGCTTAG.................................................	22	1	1	2.00	2	0	0	0	2	0	0
...............................................................................................TAGCTGCCTTCTGACGGGCTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTATTC...............................................	25	3	1	2.00	2	0	1	0	1	0	0
...............................................................................................GAGCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	1	0	0	0	1	0
...............................................................................................TTGCTGCCTTGTGAAGGGCTTA..................................................	22	1	1	2.00	2	0	0	0	0	2	0
...............................................................................................TAGCTGCCTTGTTAAGGGCTC...................................................	21	2	1	2.00	2	1	0	1	0	0	0
...............................................................................................TAGGTGCCTTGTGAAGGGCTT...................................................	21	1	1	2.00	2	0	1	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTAAG................................................	24	1	1	2.00	2	0	2	0	0	0	0
...................................................................................................TGCCTTGTGAAGGGCTTC..................................................	18	1	1	2.00	2	0	0	0	2	0	0
............................................................................................TGCTAGCTGCCTTGTGAAGGGC.....................................................	22	0	1	2.00	2	0	1	0	0	1	0
...............................................................................................TAGCTGCCTTGTTAAGGGGTT...................................................	21	2	1	2.00	2	0	0	2	0	0	0
..............................................................................................CTAGCTGCCTTGTGAAGGGC.....................................................	20	0	1	2.00	2	0	1	1	0	0	0
...............................................................................................TAGCTGCGTTGTTAAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTCCCTTGTGAAGGGCTC...................................................	21	2	1	2.00	2	0	0	1	0	1	0
...............................................................................................AAGCTGCCTTGTGAAGTGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
....................................................TCCCTCATTTGGTGCGCTTAGC.............................................................................................	22	0	1	2.00	2	0	0	0	0	2	0
...............................................................................................TATCTGCCTTGTGAAGGGCTTC..................................................	22	2	1	2.00	2	0	2	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGTCTTC..................................................	22	2	1	2.00	2	0	1	1	0	0	0
...............................................................................................TAGCAGCCTTGTTAAGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGCGCCT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCCTGGTGATGGGCTT...................................................	21	2	1	2.00	2	2	0	0	0	0	0
...............................................................................................TAGCTGCGTGGTGAAGGGGTT...................................................	21	3	2	1.50	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGTTGGGCTT...................................................	21	2	2	1.50	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGCGAACGGCTT...................................................	21	2	2	1.50	3	2	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGATGGG......................................................	18	1	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAAGGC.....................................................	19	1	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAACTCCCTTGTGAACGGCTTA..................................................	22	3	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGACGGGCGT...................................................	21	2	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGCGCT....................................................	20	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTCTGAAGCGCTTC..................................................	22	3	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCTTTGTGAGGGTCTTA..................................................	22	3	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGGGCAGGGCT....................................................	20	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCGTTGTGAAGTGCTT...................................................	21	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAGGGGTTT...................................................	21	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................CAGCTGCCTTGTCAAGGGCTT...................................................	21	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAGGGGCTTC..................................................	22	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTCCCTTGTGAAGACCTT...................................................	21	3	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGTCTTGGGAAGGGCTTA..................................................	22	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGATGGGCTTA..................................................	22	1	1	1.00	1	0	0	0	0	0	1
...............................................................................................TAGCTGCGTTGGGAAGAGCTTA..................................................	22	3	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGGGAAGCCCTTA..................................................	22	3	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGGCTTCA.................................................	23	2	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAAGGCATT...................................................	21	2	1	1.00	1	1	0	0	0	0	0
..............................................................................................CTAGCTGCCTTGTGAAGGCCT....................................................	21	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................TAGCTGCCTTGTGAATGGC.....................................................	19	1	1	1.00	1	0	1	0	0	0	0
...............................................................................................TATCTGCCTTGTGACGGGCTT...................................................	21	2	1	1.00	1	0	0	1	0	0	0
...............................................................................................TAGCTGCCTTGTGAATGTTTTA..................................................	22	3	1	1.00	1	0	0	1	0	0	0

AAATTCACGTTATTCACAAATTCAATAAATATACTTGGCGTAACGTACACTCAGGGAGTAAACCACGCGAATCGACAAAAAGTTAAACTATAACGATCGACGGAACACTTCCCGAATGCACACAAACATTATGTTGTCTTTATTCGACGTATCACGTTTTCCTATAT **********************************...(((.(((((((((((((.((((..((((.(((.(((......(((...)))....))))))))))..)))).)))))))))))))..)))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
.........................................................................................................................ACAAACACTACGTTGTCT............................	18	2	15	0.33	5	5

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6473:11075524-11075690 +	dmo_9	confident	TTTAAGTGCAATAAGT-GTTTAAGTTATTT--------------------------------ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTGTTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAACAGAAATAAGCTGC--------------------------AT----------AGTGCAAAAGGATA--------TA
droVir3	scaffold_10277:988-1175 -	dvi-mir-980	Known_mirbase	TTTTTTTT---TGAGT-GCTTAAAA--------GACGCTGGGC-TATAAAATTTGGACCAAATGTGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTT-AATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTTAAACAA---CAAATAAATTAAGTACACC-------------------------------CATA--------AA
droGri2	scaffold_14853:6339010-6339214 +	dgr_25	candidate-rescued	TTATAGTGTTTTTTTTTAT----------TTAATTCTGAT----------------------TATGAGAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTGAGGAA-----AAATAAAATAAGTGTACAAATCACTGGATGGATATCTGGAGTGCATAAGGAAA--TCATGGAA
dp5	XL_group1e:4097623-4097745 -	dps-mir-980	Known_mirbase	------------------------------------------------------------------GAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAAA---GCCGA--------------------------AA----------AT---------------CGTAAAA
droPer2	scaffold_17:1039172-1039342 -	dpe_10	confident	TTTTTTTTTTTTGAGT-GACAAAGTTCTGTGAATTCCCGCC---A-------------CA-AAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAAA---GCCGA--------------------------AA----------AT---------------CGTAAAA
droAna3	scaffold_13117:4815192-4815326 -	dan_130	candidate-rescued	TTTATATTTAAAAAGT-GATAAGAAATGTC--------------------------------CTAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAAC---------------------------------------------------------------------------
droBip1	scf7180000395508:43126-43269 +			TTTGTATT-AAAAAGT-GATTAGATTTGTC--------------------------------CTTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTTGAAA-----------------------------------------------------AATA------------
droKik1	scf7180000302544:871515-871635 +			-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTGACTTTC--ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGGAAAGAG---GATATAGAAGAAGG-------------------------------------ATA--------TA
droFic1	scf7180000453927:606435-606550 -			TTATA--------------------------------------------------------TAAGTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACTTCTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTGA------------------------------------------------------------------------
droEle1	scf7180000491011:1178497-1178595 -			-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTGACTTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTGA------------------------------------------------------------------------
droRho1	scf7180000779506:958292-958422 -			TTTGAGTTAAGTGAAT-ATTTGG------------------------------------G-AAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTGACTTCTGTTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAAC---------------------------------------------------------------------------
droBia1	scf7180000301760:1131732-1131826 -			-------------------------------------------------------------------------ATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTG-TTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAAC---------------------------------------------------------------------------
droTak1	scf7180000415179:121521-121666 -			TA---GTTCAAAAAGTTGATTAAAT--------TTCCCGCGGTTTG-----------CAG-AATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTGACTTCTGTTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAAC---------------------------------------------------------------------------
droEug1	scf7180000409277:495724-495819 -			-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACCTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAAC---------------------------------------------------------------------------
dm3	chrX:491881-491924 +			TTCAAGCGTAATAAGT-GTTCAAATTTTTT--------------------------------AGACAAAACTTATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:113236-113352 -	dsi-mir-980	Known_mirbase	AT--------------------------------------------------------------ACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTGCCAA-----------------------------------------------------ATAA------------
droSec2	scaffold_10:47185-47322 -	dse_14	confident	GTTAAATTTTCCGCGT-G---------------------------------------TGA-AATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTGCCAA-----------------------------------------------------ATAA------------
droYak3	X:117067-117210 -	dya_19	confident	TTTTAGTTTAATAAATTAA----------TGATTTCCCGCG---TG-----------TGA-GATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGAC---------------------------------------------------------------------------
droEre2	scaffold_4644:121631-121787 -	der_10	confident	TTTAAGTTAAATAAAT-AA--------------TTCCCGCG---TG-----------TGA-AATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTGCAAA-----------------------------------------------------ATTATATATTT----T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TTTAAGTGCAATAAGT-GTTTAAGTTATTT--------------------------------ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTGTTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAACAGAAATAAGCTGC--------------------------AT----------AGTGCAAAAGGATA--------TA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	22356.00	22356	1310	849	4680	6909	450	8158
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	2645.00	2645	317	131	627	967	262	341
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	591.00	591	163	5	156	214	23	30
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	272.00	272	85	1	46	50	3	87
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	215.00	215	24	0	27	48	37	79
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	192.00	192	15	55	18	25	42	37
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	139.00	139	42	3	30	27	5	32
...................................................................................AGTCCCTCATTTGGTGCGCTTAGC.........................................................................................................................................	24	1	135.00	135	9	16	0	1	109	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	85.00	85	62	1	2	10	5	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	81.00	81	5	4	21	23	1	27
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	75.00	75	49	2	4	9	3	8
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	59.00	59	17	0	12	20	7	3
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	56.00	56	26	1	7	9	4	9
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	47.00	47	5	1	15	15	0	11
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	43.00	43	8	0	11	21	0	3
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	25.00	25	23	0	0	2	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCT................................................................................................	21	1	23.00	23	1	2	5	11	2	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	21.00	21	0	0	5	11	0	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATC............................................................................................	24	1	18.00	18	8	0	4	5	0	1
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	13.00	13	5	0	2	4	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	13.00	13	13	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	11.00	11	0	0	4	3	0	4
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATCC...........................................................................................	25	1	11.00	11	7	0	1	2	0	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	9.00	9	1	0	3	3	1	1
....................................................................................GTCCCTCATTTGGTGCGCTTAGCT........................................................................................................................................	24	1	9.00	9	1	4	0	1	3	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTC..............................................................................................	21	1	9.00	9	9	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	8.00	8	1	1	1	0	5	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTC............................................................................................	24	1	8.00	8	2	0	1	1	0	4
...................................................................................AGTCCCTCATTTGGTGCGCTTAG..........................................................................................................................................	23	1	7.00	7	4	2	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTCT..............................................................................................	22	1	7.00	7	5	0	0	2	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCT.............................................................................................	23	1	5.00	5	2	0	1	1	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	5.00	5	5	0	0	0	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	5.00	5	4	1	0	0	0	0
...................................................................................AGTCCCTCATTTGGTGCGCTTAGCT........................................................................................................................................	25	1	4.00	4	0	1	0	0	3	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTC...............................................................................................	22	1	4.00	4	0	0	1	0	3	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	4.00	4	0	0	0	2	0	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	4.00	4	1	0	0	0	3	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	4.00	4	1	0	1	0	1	1
..................................................................................................................................GCTGCCTTGTGAAGGGCTTA..............................................................................................	20	1	4.00	4	2	1	0	0	1	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTT..............................................................................................	23	1	3.00	3	0	0	0	0	3	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	3.00	3	0	0	0	2	0	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTA.............................................................................................	23	1	3.00	3	0	0	1	1	0	1
....................................................................................GTCCCTCATTTGGTGCGCTTAGC.........................................................................................................................................	23	1	3.00	3	2	0	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCG.............................................................................................	23	1	3.00	3	0	0	3	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	3.00	3	0	0	0	2	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	3.00	3	3	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTG.............................................................................................	23	1	3.00	3	0	0	1	2	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTTA..............................................................................................	19	1	3.00	3	1	0	0	0	2	0
...................................................................................AGTCCCTCATTTGGTGCGCTTAGCC........................................................................................................................................	25	1	3.00	3	1	0	0	0	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTG..............................................................................................	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAA.............................................................................................	22	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTC..............................................................................................	23	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTC...............................................................................................	19	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTATCC...........................................................................................	24	1	2.00	2	2	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACT............................................................................................	24	1	2.00	2	0	0	1	1	0	0
.....................................................................................TCCCTCATTTGGTGCGCTTAGCC........................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTC...............................................................................................	20	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAG.............................................................................................	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATTC...........................................................................................	25	1	2.00	2	1	0	0	0	0	1
....................................................................................................................................TGCCTTGTGAAGGGCTTC..............................................................................................	18	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................TGCTAGCTGCCTTGTGAAGGGC.................................................................................................	22	1	2.00	2	0	0	0	0	1	1
...............................................................................................................................CTAGCTGCCTTGTGAAGGGC.................................................................................................	20	1	2.00	2	0	0	1	0	0	1
.....................................................................................TCCCTCATTTGGTGCGCTTAGC.........................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCA.............................................................................................	23	1	1.00	1	0	0	1	0	0	0

droVir3

TTTTTTTT---TGAGT-GCTTAAAA--------GACGCTGGGC-TATAAAATTTGGACCAAATGTGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTT-AATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTTAAACAA---CAAATAAATTAAGTACACC-------------------------------CATA--------AA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	29096.00	29096	14	28	916	43	312	1257	833	1212	494	925	1048	0	0	0	1023	1080	486	1217	1033	714	367	1307	2296	718	70	74	222	223	139	449	63	413	0	943	0	7	6	1	328	1415	0	0	0	0	0	0	0	0	2	2	4	1	2	1	0	2	0	0	8	450	3453	3433	0	0	8	0	0	0	7	11	9	7	9	11	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	15065.00	15065	2	6	192	1	75	227	193	22	6	27	13	0	0	0	1425	1613	324	803	1226	1030	123	1402	2470	233	65	95	228	249	241	665	100	674	0	232	2	5	3	4	77	456	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	277	173	0	14	74	0	0	0	0	0	0	0	1	2	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	1272.00	1272	0	0	27	0	6	20	19	2	1	6	4	0	0	0	78	102	40	127	79	73	13	111	217	25	4	12	25	19	13	52	12	66	0	26	0	1	0	0	9	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	13	10	0	6	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	578.00	578	0	0	16	0	5	7	1	0	0	0	0	0	0	0	48	58	9	47	41	39	1	46	93	14	3	6	11	9	18	29	6	34	0	2	0	0	0	0	2	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	4	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	515.00	515	1	2	41	2	14	25	14	10	9	12	13	0	0	0	15	22	16	41	24	11	10	19	55	29	0	1	6	4	6	15	0	5	0	30	0	0	0	0	15	44	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	416.00	416	0	0	29	0	1	3	3	0	0	1	0	0	0	0	23	49	10	34	29	27	0	37	69	4	2	3	8	8	3	13	3	18	0	4	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	8	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	172.00	172	1	0	6	0	2	5	0	0	0	2	0	0	0	0	7	4	1	4	14	7	4	21	8	2	0	0	0	0	1	8	0	10	0	8	0	0	0	0	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	131.00	131	0	0	1	0	0	2	2	0	0	0	0	0	0	0	7	10	7	21	10	9	2	8	26	3	1	0	0	1	1	1	3	3	0	3	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	91.00	91	0	0	80	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	90.00	90	0	0	1	0	0	2	1	5	3	2	3	0	0	0	5	6	2	2	3	2	1	4	4	2	0	0	1	1	0	3	0	3	0	2	0	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	10	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	82.00	82	2	1	6	0	0	2	2	0	1	3	2	0	0	0	7	12	2	4	3	1	1	4	6	6	0	0	0	1	0	0	0	0	0	4	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	74.00	74	0	0	1	0	0	0	0	0	0	0	0	0	0	0	9	4	2	10	7	5	0	4	13	0	0	0	2	1	3	1	1	3	1	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTCCCTCATTTGGCAGGTTTAGC.........................................................................................................................................	24	1	72.00	72	2	0	15	8	0	0	0	0	0	0	0	0	0	0	3	2	1	6	1	0	0	1	7	0	0	0	1	1	4	3	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	1	1	4	2	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	58.00	58	0	1	1	0	0	0	1	0	1	2	1	0	0	0	2	3	2	4	2	1	2	4	3	1	1	2	1	3	0	1	0	0	0	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	56.00	56	0	0	6	1	0	1	0	3	0	0	1	0	0	0	1	4	3	1	1	6	0	5	5	1	1	0	2	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	52.00	52	0	0	1	0	1	0	0	0	0	0	0	0	0	0	6	1	1	8	1	5	0	5	8	0	0	1	1	2	4	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	46.00	46	0	0	0	0	0	5	2	2	0	0	4	0	0	0	3	5	1	3	3	0	1	0	1	2	0	0	0	0	0	0	0	0	0	6	0	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	43.00	43	4	0	0	2	0	4	2	2	0	0	1	0	0	0	0	3	0	0	2	0	3	1	2	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTCCCTCATTTGGCAGGTTTAG..........................................................................................................................................	23	1	34.00	34	0	0	5	0	1	1	0	0	0	0	0	0	0	0	1	2	0	5	0	0	1	0	5	0	0	0	1	1	1	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	3	2	0	4	6	0	1	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	22.00	22	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	22.00	22	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	2	1	0	0	2	0	3	6	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	21.00	21	0	0	0	0	0	2	0	2	0	0	1	0	0	0	0	6	0	0	1	0	2	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTA.............................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	2	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	1	2	0	1	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGCCTTGTGAAGGGCTTA..............................................................................................	18	1	11.00	11	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	1	2	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	11.00	11	0	0	3	0	0	3	0	0	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATC............................................................................................	24	1	11.00	11	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	10.00	10	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAAA...........................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTG.............................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATCC...........................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACC............................................................................................	24	1	7.00	7	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTCCCTCATTTGGCAGGTTTAGCC........................................................................................................................................	25	1	7.00	7	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTA..............................................................................................	20	1	6.00	6	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAT............................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTCCCTCATTTGGCAGGTTTA...........................................................................................................................................	22	1	6.00	6	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCT.............................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	2	5.00	10	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATA............................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	5.00	5	1	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTCCCTCATTTGGCAGGTTT............................................................................................................................................	21	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTGT............................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTTA..............................................................................................	19	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTT..............................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGG...................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAA.............................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTC..............................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTAA............................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCA.............................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCT................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTAT..............................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTCC..............................................................................................	22	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTAAAA...........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TTATAGTGTTTTTTTTTAT----------TTAATTCTGAT----------------------TATGAGAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTGAGGAA-----AAATAAAATAAGTGTACAAATCACTGGATGGATATCTGGAGTGCATAAGGAAA--TCATGGAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	1923.00	1923	167	1756
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	202.00	202	89	113
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	27.00	27	25	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	18.00	18	11	7
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	16.00	16	13	3
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	11.00	11	10	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	9.00	9	4	5
...................................................................................AGTCCCTCATTTGGCGGACTTAGC.........................................................................................................................................	24	1	6.00	6	6	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	5.00	5	5	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	4.00	4	4	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	4.00	4	0	4
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	3.00	3	0	3
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	3.00	3	1	2
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	2.00	2	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGC.................................................................................................	18	1	2.00	2	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	2.00	2	2	0
...................................................................................AGTCCCTCATTTGGCGGACTTAGGC........................................................................................................................................	25	1	1.00	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	1.00	1	0	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	1.00	1	0	1
...................................................................................AGTCCCTCATTTGGCGGACTTAG..........................................................................................................................................	23	1	1.00	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	1.00	1	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	1.00	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	1.00	1	0	1
...................................................................................AGTCCCTCATTTGGCGGAC..............................................................................................................................................	19	1	1.00	1	1	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	1.00	1	1	0
.............................................................................................................................................AAGGGCTTACGTGTGATTGT...................................................................................	20	1	1.00	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTCG.............................................................................................	23	1	1.00	1	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	1.00	1	1	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	1.00	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	1.00	1	1	0

dp5

------------------------------------------------------------------GAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAAA---GCCGA--------------------------AA----------AT---------------CGTAAAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	10506.00	10506	0	2346	44	60	505	3809	3737	0	5	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	1895.00	1895	0	713	20	17	87	798	217	2	40	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	532.00	532	0	353	4	6	4	161	4	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGC.........................................................................................................................................	24	1	466.00	466	0	235	99	113	14	5	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	253.00	253	0	162	0	3	1	61	26	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	193.00	193	0	180	0	0	0	11	2	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAG..........................................................................................................................................	23	1	184.00	184	0	170	5	3	3	2	0	1	0	0
...................................................................................AGTCTCTCACATGGCTGGTC.............................................................................................................................................	20	1	180.00	180	0	177	1	2	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCT............................................................................................................................................	21	1	126.00	126	2	120	1	2	0	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	110.00	110	0	93	0	0	1	13	2	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	86.00	86	1	66	4	2	0	12	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	75.00	75	0	61	1	0	0	10	3	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	49.00	49	0	48	0	0	0	0	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	48.00	48	0	41	0	0	1	6	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTA...........................................................................................................................................	22	1	32.00	32	1	28	0	3	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	29.00	29	0	29	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	29.00	29	0	19	0	0	0	6	4	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	22.00	22	0	14	0	0	0	3	5	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	19.00	19	0	1	4	3	1	6	4	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	18.00	18	0	18	0	0	0	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCTAGC.........................................................................................................................................	23	1	17.00	17	0	17	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGT.........................................................................................................................................	24	1	16.00	16	0	15	0	0	1	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	15.00	15	0	5	1	1	0	4	4	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	14.00	14	0	4	0	0	0	8	2	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	13.00	13	0	10	0	0	2	1	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTC.............................................................................................................................................	19	1	12.00	12	0	12	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGT..............................................................................................................................................	19	1	11.00	11	0	11	0	0	0	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCTAG..........................................................................................................................................	22	1	11.00	11	0	11	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGCT........................................................................................................................................	25	1	8.00	8	0	8	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGC.................................................................................................	18	1	8.00	8	0	8	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	8.00	8	0	1	0	0	0	6	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	7.00	7	0	3	0	0	0	2	2	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTT...........................................................................................................................................	22	1	7.00	7	0	6	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	6.00	6	0	4	0	0	0	1	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGTT.................................................................................................	19	1	6.00	6	0	5	0	0	0	1	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGCA........................................................................................................................................	25	1	6.00	6	0	5	0	0	1	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCT............................................................................................................................................	20	1	6.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGG...............................................................................................................................................	18	1	5.00	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAA.............................................................................................	22	1	5.00	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	5.00	5	0	1	1	0	0	3	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	4.00	4	0	1	0	0	0	2	0	0	0	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	3.00	3	0	2	0	0	0	1	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCT................................................................................................	21	1	3.00	3	0	1	0	1	0	0	1	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTA..............................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	3.00	3	0	1	0	0	0	1	1	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	24	1	3.00	3	0	2	0	0	0	0	1	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCC............................................................................................................................................	21	1	3.00	3	0	0	0	3	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	2	3.00	6	0	5	0	0	0	1	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAT..........................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTAT............................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCA............................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0
......................................................................................CTCTCACATGGCTGGTCTAG..........................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGC.................................................................................................	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTC..............................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGT..............................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTT.............................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGCTT.......................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................CTCACATGGCTGGTCTAGC.........................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................TGCCTTGTGAAGGGCTTAA.............................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCTTT..........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGCC........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCTAGT.........................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTAT.............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GTCTCTCACATGGCTGGTCTA...........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TGACTTGTT-TCTAATATTGC....................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TTTTTTTTTTTTGAGT-GACAAAGTTCTGTGAATTCCCGCC---A-------------CA-AAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAAA---GCCGA--------------------------AA----------AT---------------CGTAAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	28972.00	28972	4	520	175	4070	13752	10451
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	3275.00	3275	2	160	20	766	2063	264
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	785.00	785	3	46	2	144	563	27
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	320.00	320	0	49	0	40	176	55
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	119.00	119	0	35	0	11	68	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	63.00	63	0	13	0	12	35	3
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	55.00	55	0	10	0	12	31	2
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	52.00	52	1	1	0	15	34	1
...................................................................................AGTCTCTCACATGGCTGGTCTAG..........................................................................................................................................	23	1	49.00	49	0	41	3	1	4	0
...................................................................................AGTCTCTCACATGGCTGGTCTAGC.........................................................................................................................................	24	1	46.00	46	0	35	9	0	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	45.00	45	0	4	0	7	27	7
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	38.00	38	0	0	0	10	16	12
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	35.00	35	0	1	0	5	29	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	30.00	30	0	1	0	5	17	7
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	28.00	28	0	0	0	4	22	2
...................................................................................AGTCTCTCACATGGCTGGTC.............................................................................................................................................	20	1	26.00	26	0	24	0	0	2	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	23.00	23	0	14	0	4	5	0
...................................................................................AGTCTCTCACATGGCTGGTCT............................................................................................................................................	21	1	21.00	21	5	15	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	21.00	21	0	5	0	4	9	3
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	16.00	16	0	1	0	2	4	9
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	15.00	15	0	0	0	2	13	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	12.00	12	0	1	0	1	9	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	11.00	11	0	1	1	2	6	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	10.00	10	0	0	0	1	8	1
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	9.00	9	0	2	0	4	3	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	8.00	8	0	1	0	1	6	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	7.00	7	0	1	0	0	6	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	6.00	6	0	3	0	1	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	5.00	5	0	0	0	0	1	4
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	4.00	4	0	1	0	0	2	1
................................................................................................................................TAGCTGCCTTGTGAAGGT..................................................................................................	18	1	4.00	4	0	0	0	0	4	0
...................................................................................AGTCTCTCACATGGCTGGTCTA...........................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCA................................................................................................	20	1	3.00	3	0	0	0	0	3	0
....................................................................................GTCTCTCACATGGCTGGTCTAG..........................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTG.............................................................................................	23	1	3.00	3	0	0	0	1	1	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	3.00	3	0	2	0	0	1	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	2.00	2	0	0	0	1	1	0
...........................................................................................................TGACTTGTT-TCTAATACTGC....................................................................................................................	20	1	2.00	2	0	2	0	0	0	0

droAna3

TTTATATTTAAAAAGT-GATAAGAAATGTC--------------------------------CTAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	28659.00	28659	952	32	79	3458	10045	14093
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	1822.00	1822	283	14	5	527	501	492
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	246.00	246	100	1	0	126	3	16
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	238.00	238	57	0	0	52	76	53
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	182.00	182	1	0	0	1	90	90
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	120.00	120	5	0	0	34	31	50
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	96.00	96	72	0	0	7	6	11
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	96.00	96	0	1	0	5	52	38
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	82.00	82	0	0	0	2	62	18
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	66.00	66	30	0	0	18	7	11
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	62.00	62	23	0	0	17	12	10
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	45.00	45	3	0	0	18	9	15
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	37.00	37	6	1	0	5	2	23
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	31.00	31	7	0	0	9	11	4
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	31.00	31	28	0	0	2	1	0
...................................................................................AGCCTCTCATTTGGCCTGCCTAGC.........................................................................................................................................	24	1	30.00	30	26	4	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	22.00	22	2	5	0	14	0	1
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	12.00	12	3	0	0	6	2	1
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	9.00	9	4	0	0	1	3	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	8.00	8	1	0	0	6	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	7.00	7	7	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	5.00	5	1	0	0	2	0	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	5.00	5	0	0	0	2	1	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	5.00	5	1	0	0	0	3	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	1	4.00	4	2	0	0	0	1	1
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	4.00	4	1	0	0	0	2	1
...................................................................................AGCCTCTCATTTGGCCTGCCTAG..........................................................................................................................................	23	1	4.00	4	3	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTG.............................................................................................	23	1	4.00	4	0	0	0	0	1	3
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	3.00	3	2	0	0	0	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTT.............................................................................................	22	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAA.............................................................................................	22	1	3.00	3	3	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTGT.............................................................................................	23	1	2.00	2	0	0	0	2	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTAT..............................................................................................	22	1	2.00	2	0	0	0	1	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	2.00	2	2	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCG................................................................................................	20	1	1.00	1	0	0	0	1	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTA............................................................................................	24	1	1.00	1	1	0	0	0	0	0

droBip1

TTTGTATT-AAAAAGT-GATTAGATTTGTC--------------------------------CTTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTTGAAA-----------------------------------------------------AATA------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTGACTTTC--ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGGAAAGAG---GATATAGAAGAAGG-------------------------------------ATA--------TA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTATA--------------------------------------------------------TAAGTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACTTCTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTGA------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTGACTTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTGA------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTGAGTTAAGTGAAT-ATTTGG------------------------------------G-AAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTGACTTCTGTTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------------------------------------------------------------------ATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTG-TTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TA---GTTCAAAAAGTTGATTAAAT--------TTCCCGCGGTTTG-----------CAG-AATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTGACTTCTGTTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

-------------------------------------------------------------------------ATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACCTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCAAGCGTAATAAGT-GTTCAAATTTTTT--------------------------------AGACAAAACTTATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

GSM154618

Ovary

GSM154620

Ovary

GSM154621

Ovary

GSM154622

Ovary

GSM180328

Head

GSM180329

Mixed-body

GSM180330

Embryo

GSM180331

Embryo

GSM180332

Embryo

GSM180333

Embryo

GSM180334

Larvae

GSM180335

Disc

GSM180336

Pupae

GSM180337

S2

GSM239041

Head

GSM239050

Head

GSM239051

S2

GSM239052

S2

GSM246084

Head

GSM266765

S2

GSM280082

Ovary

GSM280083

Ovary

GSM280084

Ovary

GSM280085

Testis

GSM280086

Ovary

GSM280087

S2-NP

GSM280088

S2-NP

GSM312995

Head

GSM313160

Head

GSM313161

Head

GSM313162

Head

GSM313163

Head

GSM313164

Head

GSM313165

Head

GSM343287

Embryo

GSM379050

Ovary

GSM379051

Ovary

GSM379052

Ovary

GSM379053

Ovary

GSM379054

Ovary

GSM379055

Ovary

GSM379056

Ovary

GSM379057

Ovary

GSM379058

Ovary

GSM379059

Ovary

GSM379060

Ovary

GSM379061

Ovary

GSM379062

Ovary

GSM379063

Ovary

GSM379064

Ovary

GSM379065

Ovary

GSM379066

Ovary

GSM379067

Ovary

GSM424739

S2

GSM424740

S2

GSM424741

S2

GSM467729

Female-body

GSM467730

Female-body

GSM467731

Female-body

M002

CS

M003

Male-body

M004

Male-body

M005

ML-DmD32

M006

ML-DmD32

M029

OSC

M030

OSC

M031

OSC

M032

S2-R+

M033

S2-R+

M034

S2-R+

M035

S2-R+

M036

S2-R+

M037

S2-R+

M038

S2-R+

M039

S2-R+

M048

S2-R+

OSS2

OSS

OSS6

OSS

OSS7

OSS

OSS8

OSS

S1

Head

S10

Embryo

S11

Embryo

S12

Embryo

S13

Embryo

S14

Embryo

S15

S2-GMR

S16

Kc

S17

Larvae

S18

Larvae

S19

Pupae

S2

Head

S20

Pupae

S21

Disc

S22

Head

S23

Female-body

S24

Male-body

S25

Larvae

S26

Larvae

S27

Pupae

S28

Pupae

S29

Head

S3

Male-body

S30

S2-GMR

S31

S2

S32

S2

S33

Kc

S34

Kc

S35

Kc

S4

Female-body

S5

Disc

S6

Embryo

S7

Embryo

S8

S2

S9

Embryo

SRR001337

Head

SRR001338

Head

SRR001339

Head

SRR001340

Head

SRR001341

Head

SRR001342

Head

SRR001343

Head

SRR001344

Head

SRR001345

Head

SRR001346

Head

SRR001347

Head

SRR001348

Head

SRR001349

Head

SRR001664

Head

SRR010951

Ovary

SRR010952

Ovary

SRR010953

Ovary

SRR010954

Ovary

SRR010955

Ovary

SRR010956

Ovary

SRR010957

Ovary

SRR010958

Ovary

SRR010959

Ovary

SRR010960

Ovary

SRR014268

Embryo

SRR014269

Embryo

SRR014270

Embryo

SRR014271

Embryo

SRR014272

Embryo

SRR014273

Ovary

SRR014274

Ovary

SRR014275

Ovary

SRR014276

Ovary

SRR014277

Ovary

SRR014278

Ovary

SRR014279

Ovary

SRR014280

Ovary

SRR014281

Ovary

SRR014282

Ovary

SRR023197

S2

SRR023399

S2

SRR023400

S2

SRR023402

S2

SRR023407

S2

SRR029028

S2

SRR029029

S2

SRR029030

S2

SRR029031

S2

SRR029032

S2

SRR029033

S2

SRR029608

Head

SRR029633

Head

SRR030145

gb3

SRR031692

Head

SRR031693

Head

SRR031694

Head

SRR031696

Head

SRR031697

Head

SRR031698

Head

SRR031699

Head

SRR031700

Head

SRR031701

Head

SRR031702

Head

SRR031703

Head

SRR031704

Head

SRR032092

S2

SRR032093

S2

SRR032094

S2

SRR032095

S2-NP

SRR032096

S2-NP

SRR032152

Head

SRR060643

Testis

SRR060644

Ovary

SRR060645

Testis

SRR060646

Ovary

SRR060647

Ovary

SRR060648

Ovary

SRR060649

Ovary

SRR060650

Testis

SRR060651

Ovary

SRR060652

Testis

SRR060653

Ovary

SRR065151

Ovary

SRR065152

Ovary

SRR065153

Ovary

SRR065154

Ovary

SRR065155

Ovary

SRR065800

Ovary

SRR065801

Ovary

SRR065802

Ovary

SRR065803

Ovary

SRR065804

Ovary

SRR065805

Ovary

SRR065806

Ovary

SRR065807

Ovary

SRR097865

S2-NP

SRR097866

S2-NP

SRR097867

S2-NP

SRR298536

Ovary

SRR298537

Ovary

SRR298711

Ovary

SRR298712

Ovary

SRR317110

Ovary

SRR317111

Ovary

SRR317112

Ovary

SRR317113

Ovary

SRR317114

Ovary

SRR317115

Ovary

SRR317116

Ovary

SRR317117

Ovary

SRR341115

S2

SRR341116

S2

SRR341117

S2

SRR341118

S2

SRR351332

Mixed-body

SRR351333

Mixed-body

T004

OSC

T005

CME-L1

V001

Embryo

V002

Embryo

V003

S2

V006

Female-body

V007

Head

V008

S2

V009

CME-L1

V010

ML-DmD20-C5

V011

Sg4

V012

Male-body

V013

Head

V014

DTT

V015

DreRFHV

V018

Kc167

V019

GM2

V020

S2-R+

V021

ML-DmD21

V022

ML-DmD32

V023

Head

V024

Kc167

V025

S2-R+

V026

1182-2H

V027

ML-DmD21

V028

CME-W1-Cl.8+

V029

ML-DmD9

V030

ML-DmD8

V031

GM2

V032

S1

V033

CME-W1-Cl.8+

V034

ML-DmD16-C3

V035

ML-DmD32

V036

ML-DmD20-C5

V037

S2

V038

S2

V063

Ovary

V0632

Ovary

V064

Ovary

V0642

Ovary

V065

Ovary

V0652

Ovary

V066

Ovary

V0662

Ovary

V067

S2-NP

V073

mbn2

V074

S3

V075

ML-DmBG1-C1

V076

ML-DmBG3-C2

V077

Head

V078

Head

V079

Head

V080

Head

V081

Embryo

V082

Embryo

V083

Male-body

V084

Female-body

V085

CME-W2

V086

Female-body

V088

Ovary

V0882

Ovary

V089

Ovary

V0892

Ovary

V090

Male-body

V091

fGS/OSS

V092

Male-body

V093

Male-body

V094

S2-R+

V095

S2-R+

V096

Ovary

V097

Ovary

V098

Ovary

V125

ML-DmD9

V126

CME-L1

V127

G2

V128

S3

V129

ML-DmBG1-C1

V130

ML-DmBG3-C2

V131

ML-DmD16-C3

V132

ML-DmD32

V133

Sg4

V134

ML-DmD8

V135

CME-W2

V136

Male-body

V137

Head

V138

Male-body

V139

Female-body

V140

Female-body

V141

Female-body

V142

Female-body

V144

OSC

V145

S2

V146

S1

V147

1182-2H

V148

mbn2

GSM1528798

follicle cells

No Reads

droSim2

AT--------------------------------------------------------------ACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTGCCAA-----------------------------------------------------ATAA------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	1324.00	1324	170	46	15	177	0	6	4	0	1	1	407	497	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	285.00	285	8	1	5	18	4	27	3	1	15	30	105	67	0	1	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCTAGC.........................................................................................................................................	24	1	85.00	85	15	3	21	1	0	0	0	0	1	0	0	43	0	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	57.00	57	17	1	0	14	0	6	0	1	0	1	17	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	57.00	57	9	2	0	0	5	28	0	0	0	0	13	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	40.00	40	0	0	0	0	1	14	0	0	0	0	25	0	0	0	0	0	0
.....................................................................................................................................GCCTTGTGAAGGGCTT...............................................................................................	16	1	38.00	38	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACG............................................................................................	24	1	17.00	17	0	0	0	0	2	15	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	12.00	12	0	0	0	3	0	0	0	0	0	0	7	0	0	2	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	9.00	9	0	0	0	3	0	0	0	1	0	0	3	0	2	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	9.00	9	0	0	0	7	0	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	8.00	8	0	0	0	0	0	0	1	0	0	0	5	0	0	1	0	0	1
...................................................................................AGTTTTTCATTTGGCGTGGCTAG..........................................................................................................................................	23	1	7.00	7	2	1	1	0	0	0	0	0	0	0	0	2	1	0	0	0	0
.....................................................................................................................................GCCTTGTGAAGGGCTTA..............................................................................................	17	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	5.00	5	3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGCCTTGTGAAGGGCTT...............................................................................................	17	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCT............................................................................................................................................	21	1	3.00	3	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	3.00	3	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAGC............................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CCTTGTGAAGGGCTT...............................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCTAA..........................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTG...............................................................................................................................................	18	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGC.............................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................GCCTTGTGAAGGGCTTT..............................................................................................	17	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAA.....................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAG....................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGA..................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGT................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCG................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCTAGG.........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................TGCCTTGTGAAGGGCTTT..............................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCACTACTTTTTTAATATT......................................................................................................................	19	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGG...................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................CCTTGTGAAGGGCTTA..............................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................TCATTTGGCGTGGCTAGC.........................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGC.................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTTAAATTTTCCGCGT-G---------------------------------------TGA-AATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTGCCAA-----------------------------------------------------ATAA------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	24813.00	24813	352	6496	11016	6949
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	2542.00	2542	147	380	1722	293
...................................................................................AGTTTTTCATTTGGCGTGGCTAGC.........................................................................................................................................	24	1	982.00	982	27	38	804	113
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	138.00	138	21	3	68	46
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	120.00	120	31	45	6	38
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	93.00	93	3	1	78	11
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	70.00	70	33	14	13	10
...................................................................................AGTTTTTCATTTGGCGTGGCTAG..........................................................................................................................................	23	1	54.00	54	2	9	38	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	40.00	40	8	8	14	10
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	40.00	40	0	2	35	3
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	27.00	27	3	3	15	6
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	26.00	26	16	1	7	2
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	24.00	24	12	8	0	4
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	24.00	24	0	6	10	8
...................................................................................AGTTTTTCATTTGGCGTGGCT............................................................................................................................................	21	1	19.00	19	0	5	6	8
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	17.00	17	0	3	9	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	14.00	14	4	5	0	5
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	12.00	12	2	5	3	2
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	10.00	10	7	1	1	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	7.00	7	0	3	3	1
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	6.00	6	1	1	4	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	6.00	6	0	3	2	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	5.00	5	0	2	1	2
...................................................................................AGTTTTTCATTTGGCGTGGCTA...........................................................................................................................................	22	1	4.00	4	0	0	3	1
...................................................................................AGTTTTTCATTTGGCGTGGCTAGCT........................................................................................................................................	25	1	4.00	4	0	0	4	0
....................................................................................GTTTTTCATTTGGCGTGGCTAGC.........................................................................................................................................	23	1	4.00	4	3	0	1	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	3.00	3	0	0	2	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	3.00	3	1	0	1	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	1	3.00	3	1	1	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	3.00	3	3	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGGC.............................................................................................................................................	20	1	3.00	3	0	0	3	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACT............................................................................................	24	1	3.00	3	0	1	1	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	3.00	3	2	1	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	2.00	2	0	0	2	0
.....................................................................................TTTTTCATTTGGCGTGGCTAGC.........................................................................................................................................	22	1	2.00	2	1	1	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCTAGCA........................................................................................................................................	25	1	2.00	2	0	0	2	0
...................................................................................AGTTTTTCATTTGGCGTGGCTAGT.........................................................................................................................................	24	1	2.00	2	0	0	1	1
..................................................................................................................................GCTGCCTTGTGAAGGGCTTA..............................................................................................	20	1	2.00	2	0	0	2	0
...................................................................................AGTTTTTCATTTGGCGTG...............................................................................................................................................	18	1	2.00	2	0	0	0	2
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTT.............................................................................................	22	1	2.00	2	2	0	0	0
..................................................................................CAGTTTTTCATTTGGCGTGGCTAGC.........................................................................................................................................	25	1	2.00	2	0	0	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTA.............................................................................................	23	1	2.00	2	0	2	0	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	1.00	1	0	1	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTACG............................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTA.............................................................................................	22	1	1.00	1	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGCT.................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCGG...............................................................................................	21	1	1.00	1	0	0	0	1
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	1.00	1	1	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAAA...........................................................................................	25	1	1.00	1	0	0	1	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTAT.............................................................................................	21	1	1.00	1	1	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	1.00	1	0	0	0	1
...........................................................................................................................ATTGCTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	27	1	1.00	1	0	1	0	0
...................................................................................AGTTTTTCATTTGGCGTGGCTT...........................................................................................................................................	22	1	1.00	1	0	0	0	1
..........................................................................................................................TATTGCTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	28	1	1.00	1	0	0	1	0
...................................................................................AGTTTTTCATTTGGCGTGGCTGAT.........................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACA............................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	1.00	1	0	0	0	1
...................................................................................AGTTTTTCATTTGGCGTGGCTAGCTCA......................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTA............................................................................................	24	1	1.00	1	0	0	0	1
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACG............................................................................................	24	1	1.00	1	0	0	1	0
..............................................................................................................................GCTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	24	1	1.00	1	0	0	1	0

droYak3

TTTTAGTTTAATAAATTAA----------TGATTTCCCGCG---TG-----------TGA-GATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	9564.00	9564	21	608	247	663	1835	3957	2233	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	1136.00	1136	1	169	87	77	177	450	175	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	24	1	161.00	161	0	3	150	6	0	1	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	156.00	156	1	29	10	10	35	70	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	119.00	119	1	44	7	1	16	39	11	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	53.00	53	0	47	0	0	3	3	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	41.00	41	0	0	0	0	12	21	8	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	37.00	37	0	14	0	0	2	13	8	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	31.00	31	0	17	1	0	3	9	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	30.00	30	0	0	22	0	1	4	3	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	23.00	23	0	2	6	7	1	2	5	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	20.00	20	0	4	13	0	1	1	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	18.00	18	0	1	1	0	4	10	2	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	16.00	16	0	15	1	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	16.00	16	0	1	0	0	3	9	3	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	14.00	14	0	3	0	0	2	7	2	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	11.00	11	0	0	3	0	4	2	2	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCTAG..........................................................................................................................................	23	1	9.00	9	0	4	5	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	7.00	7	0	0	1	0	2	3	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	7.00	7	0	1	2	1	0	2	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	5.00	5	0	0	0	0	0	2	3	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCT............................................................................................................................................	21	1	3.00	3	0	1	0	2	0	0	0	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	3.00	3	0	0	0	0	1	1	1	0	0	0	0
.....................................................................................TTTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	3.00	3	0	1	0	1	0	0	1	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
..................................................................................CAGTTTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTT..............................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................TTAGCTTTTTTTAAATATTGC....................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCT................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................GTTTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCTA...........................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTT.............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................GTTTTTCATTTGGCGTGCCTAG..........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGAA................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGAC................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGCTAGCTGCCTTGTGAAGGGT.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................TTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTGA.............................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

TTTAAGTTAAATAAAT-AA--------------TTCCCGCG---TG-----------TGA-AATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTGCAAA-----------------------------------------------------ATTATATATTT----T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................TAGCTGCCTTGTGAAGGGCTT...............................................................................................	21	1	39978.00	39978	1819	25	4711	543	13217	19663	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA..............................................................................................	22	1	3801.00	3801	646	5	668	54	1236	1192	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCT................................................................................................	20	1	427.00	427	114	2	71	5	33	202	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTT..............................................................................................	22	1	267.00	267	101	1	35	1	66	63	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.............................................................................................	23	1	152.00	152	60	0	27	0	44	21	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTT...............................................................................................	20	1	140.00	140	85	0	5	1	16	33	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.............................................................................................	23	1	107.00	107	0	0	21	1	28	57	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.............................................................................................	23	1	100.00	100	53	0	9	0	17	18	3
...................................................................................AGTTTTTCATTTGGCGTGCCTAGC.........................................................................................................................................	24	1	90.00	90	33	26	1	0	1	29	0
................................................................................................................................TAGCTGCCTTGTGAAGGG..................................................................................................	18	1	45.00	45	3	0	0	0	7	35	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTA..............................................................................................	21	1	41.00	41	36	0	1	0	3	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTT.............................................................................................	23	1	36.00	36	15	0	3	0	11	7	0
................................................................................................................................TAGCTGCCTTGTGAAGGGC.................................................................................................	19	1	35.00	35	2	4	4	0	3	22	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTC...............................................................................................	21	1	35.00	35	0	1	4	0	6	24	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTT...............................................................................................	22	1	32.00	32	7	0	2	0	4	19	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTATT............................................................................................	24	1	22.00	22	5	0	4	0	11	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTG...............................................................................................	21	1	19.00	19	10	0	5	0	2	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTG..............................................................................................	22	1	17.00	17	1	0	5	0	1	10	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTA...............................................................................................	21	1	12.00	12	0	0	4	1	3	4	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTC..............................................................................................	22	1	11.00	11	1	1	0	0	5	4	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAT.............................................................................................	22	1	8.00	8	8	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTT..............................................................................................	21	1	8.00	8	7	0	0	0	1	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTT...............................................................................................	19	1	8.00	8	0	0	1	0	2	5	0
...................................................................................AGTTTTTCATTTGGCGTGCCTAG..........................................................................................................................................	23	1	7.00	7	2	1	0	0	0	4	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.............................................................................................	23	1	7.00	7	0	0	1	0	1	5	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA............................................................................................	24	1	6.00	6	0	0	0	0	4	2	0
...................................................................................................................................CTGCCTTGTGAAGGGCTT...............................................................................................	18	1	5.00	5	0	0	1	0	4	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCT............................................................................................................................................	21	1	5.00	5	1	0	0	0	0	4	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA..............................................................................................	23	1	4.00	4	3	0	0	0	0	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAA.............................................................................................	22	1	4.00	4	4	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCT................................................................................................	19	1	4.00	4	4	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTG.............................................................................................	23	1	3.00	3	2	0	1	0	0	0	0
..................................................................................................................................GCTGCCTTGTGAAGGGCTTA..............................................................................................	20	1	3.00	3	1	0	1	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAAA...........................................................................................	25	1	3.00	3	2	0	0	0	0	1	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTTTT............................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCC................................................................................................	20	1	2.00	2	0	1	0	0	1	0	0
...................................................................................AGTTTTTCATTTGGCGTGCCTA...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0
...................................................................................AGTTTTTCATTTGGCGTGCC.............................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTT............................................................................................	24	1	2.00	2	1	0	0	0	0	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGA.................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
................................................................................................................................TAGCTGCCTTGTGAAGGGT.................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0
....................................................................................GTTTTTCATTTGGCGTGCCTAG..........................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACT............................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAAT............................................................................................	24	1	2.00	2	0	0	1	0	1	0	0
...............................................................................................................................CTAGCTGCCTTGTGAAGGGCT................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................TTTTTCATTTGGCGTGCCT............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................GCTAGCTGCCTTGTGAAGGGCTT...............................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................AGTTTTTCATTTGGCGTG...............................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................AGCTGCCTTGTGAAGGGCTTAG.............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTTA............................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................TAGCTGCCTTGTGAAGGGCTTTA.............................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dmo_9

scaffold_6473:11075574-11075640 +

Known Ortholog

Canonical miRNA

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.9	-33.7	-33.7