ID:

dmo_896

 Coordinate:

scaffold_6482:2685326-2685476 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.0

Flybase annnotation

CDS [Dmoj\GI14478-cds]; exon [dmoj_GLEANR_15010:3]; intron [Dmoj\GI14478-in]

Repeatable elements

NameClassFamilyStrand
Gypsy6-I_Dmoj-intLTRGypsy+
Gypsy6-I_Dmoj-intLTRGypsy+
mature
  1. scaffold_2691:2432-2455 -
  2. scaffold_4658:2012-2035 +
  3. scaffold_4658:7022-7045 +
  4. scaffold_4743:16909-16932 -
  5. scaffold_6314:47306-47329 +
  6. dmo_896  scaffold_6482:2685415-2685438 +
  7. scaffold_6482:2694237-2694260 +
star
  1. scaffold_2691:2473-2495 -
  2. scaffold_4658:1972-1994 +
  3. scaffold_4658:6982-7004 +
  4. scaffold_4743:16950-16972 -
  5. scaffold_6314:47266-47288 +
  6. dmo_896  scaffold_6482:2685375-2685397 +
  7. scaffold_6482:2694197-2694219 +
  8. scaffold_6541:980969-980991 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGTTCGGCACAGAGGCACAGGACTCCTGGCTTGAAGGGCAGGCCGCGGATCATGTAGCGACGTCGCCAGCGGCAACGCGACGCGCGAGTGATCTGCTGCCAACGCTGCGGACGACGAGACAGGAGCACAGAGGGACGTTGCAATTAGAGCAACGCGGGAAGCAGACTGGGGCACCCTCCACAAGAGCGGTGTGACGCTAGCTCGACAGCGATGACAGCGAGAGTGATGACGATGATGATGCTAAAGGAGT
***************************************************************************************************.....((......((......................((((((.......))))))))....))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 M060
embryo
 V110
male body		 V041
embryo
..................................................................................................................................................................................................................TATGACAGCGATTGTGATGACG................... 22 3 1 1.00 1 0 1 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGC........................................................................................ 24 0 7 0.71 5 5 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGAC.................................................................................... 28 0 7 0.43 3 3 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGA........................................................................................... 21 0 7 0.43 3 3 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAG......................................................................................... 23 0 7 0.29 2 2 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGA..................................................................................... 27 0 7 0.29 2 2 0 0 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGCAGA..................................................................................... 24 0 7 0.29 2 2 0 0 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGCA....................................................................................... 22 0 7 0.29 2 2 0 0 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGC........................................................................................ 21 0 7 0.29 2 1 0 1 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGCAGAC.................................................................................... 25 0 7 0.14 1 1 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGC..................................................................................... 27 1 7 0.14 1 1 0 0 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGCAG...................................................................................... 23 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................................AATTAGAGCAACGCGGGAAGAAA...................................................................................... 23 2 7 0.14 1 0 0 0 0 1
..............................................................................................................................................AATTAGAGCAACGCGGGAAG......................................................................................... 20 0 7 0.14 1 1 0 0 0 0
..........................................................................................................................................TTGCAATTAGAGCAACGCGGG............................................................................................ 21 0 7 0.14 1 1 0 0 0 0
............................................................................................................................................GCAATTAGAGCAACGCGGGAAGCAGAC.................................................................................... 27 0 7 0.14 1 1 0 0 0 0
.............................................................................................................................................CAATTAGAGCAACGCGGGAAGCAGAC.................................................................................... 26 0 7 0.14 1 1 0 0 0 0
...........................................................................................................................................TTCAATTAGAGCAACGCGGGAAGC........................................................................................ 24 1 7 0.14 1 0 0 1 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCA....................................................................................... 25 0 7 0.14 1 1 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAA...................................................................................... 26 1 7 0.14 1 1 0 0 0 0
...........................................................................................................................................TGCAATTAGAGCAACGCGGGAA.......................................................................................... 22 0 7 0.14 1 1 0 0 0 0
...................................................................................................CCAACGCTGCGGACGACGAGACA................................................................................................................................. 23 0 8 0.13 1 1 0 0 0 0
.................................................ATCATGTAGCGACGTCGCCAGC.................................................................................................................................................................................... 22 0 8 0.13 1 1 0 0 0 0
................................................................................................................................................TTAGAGCAACGCGGGAAGCAGACTGG................................................................................. 26 0 8 0.13 1 0 0 1 0 0
..........................................................................................................................GGAGCACAGAGGGACGTTGCAATTAGA...................................................................................................... 27 0 8 0.13 1 0 0 0 1 0
................................................................................................................................................................................CCCCACCACAGCGGTGTGA........................................................ 19 3 9 0.11 1 0 1 0 0 0
......................................................................................................................................................CAACGCGGGAAGCAGACTGGG................................................................................ 21 0 9 0.11 1 1 0 0 0 0
.............AGGCACAGGACTCCTGGCTTGAAGGG.................................................................................................................................................................................................................... 26 0 9 0.11 1 0 0 1 0 0
...TTCGGCACAGAGGCACAGGAC................................................................................................................................................................................................................................... 21 0 10 0.10 1 0 0 1 0 0
.CGTTCGGCACAGAGGCACAGGA.................................................................................................................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0
.......GGACAGAGGCACAGGACTCCT............................................................................................................................................................................................................................... 21 1 10 0.10 1 0 0 1 0 0
.....CGGCACAGAGGCACAGGACTC................................................................................................................................................................................................................................. 21 0 10 0.10 1 0 0 1 0 0
..............................CTTGAAGGGCAGGCCGCGGAT........................................................................................................................................................................................................ 21 0 18 0.06 1 0 0 1 0 0
..........................CTGGCTTGAAGGGCAGGCCGCGGATC....................................................................................................................................................................................................... 26 0 18 0.06 1 1 0 0 0 0
...............................TTGAAGGGCAGGCCGCGGATC....................................................................................................................................................................................................... 21 0 18 0.06 1 0 0 0 0 1
...............................................GGATCATGTAGCGACGTCGCCAG..................................................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0 0
.................................................AGCATGTAGCGACGTCGCCAG..................................................................................................................................................................................... 21 1 19 0.05 1 0 0 1 0 0
..........................................................................................................................GGAGCACAGAGGGACGTTGCAAA.......................................................................................................... 23 1 20 0.05 1 0 0 0 1 0
................................................................................................................CGACGAGACAGGAGCACAGAGGG.................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
......................................................................................................................GACAGGAGCACAGAGGGACGTC............................................................................................................... 22 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GGCAAGCCGTGTCTCCGTGTCCTGAGGACCGAACTTCCCGTCCGGCGCCTAGTACATCGCTGCAGCGGTCGCCGTTGCGCTGCGCGCTCACTAGACGACGGTTGCGACGCCTGCTGCTCTGTCCTCGTGTCTCCCTGCAACGTTAATCTCGTTGCGCCCTTCGTCTGACCCCGTGGGAGGTGTTCTCGCCACACTGCGATCGAGCTGTCGCTACTGTCGCTCTCACTACTGCTACTACTACGATTTCCTCA
****************************************************************************************.....((......((......................((((((.......))))))))....))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
..........................................................................................................................CCTCGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 27 0 8 2.88 23 21 2 0 0 0
.............................................................................................................................CGTGTCTCCCTGCAACGTTAATCTCGT................................................................................................... 27 0 8 2.75 22 20 1 0 1 0
.............................................................................................................................CGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 24 0 8 1.25 10 4 4 0 2 0
..............................................................................................................................GTGTCTCCCTGCAACGTTAATCTCGT................................................................................................... 26 0 8 1.13 9 7 2 0 0 0
...........................................................................................................................CTCGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 26 0 8 0.75 6 3 3 0 0 0
............................................................................................................................TCGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 25 0 8 0.63 5 3 2 0 0 0
.............................................................................................................................CGTGTCTCCCTGCAACGTTAATCTCG.................................................................................................... 26 0 8 0.50 4 4 0 0 0 0
...........................................................................................................................CTCGTGTCTCCCTGCAACGTTAATCTCGT................................................................................................... 29 0 8 0.38 3 3 0 0 0 0
...............................................................................................CGACGGTTGCGACGCCTGCTGCTCT................................................................................................................................... 25 0 8 0.38 3 1 1 0 0 1
...................................................................................................GGTTGCGACGCCTGCTGCTCTGTCCT.............................................................................................................................. 26 0 8 0.38 3 2 0 0 1 0
..............................................................................................ACGACGGTTGCGACGCCTGCTGCTCT................................................................................................................................... 26 0 8 0.38 3 2 0 1 0 0
....................................................................................................GTTGCGACGCCTGCTGCTCTGTCCT.............................................................................................................................. 25 0 20 0.30 6 4 0 2 0 0
............................................................................................AGACGACGGTTGCGACGCCTGCTGCT..................................................................................................................................... 26 0 7 0.29 2 2 0 0 0 0
..................................................................GGTCGCCGTTGCGCTGCGCGCTCACT............................................................................................................................................................... 26 0 7 0.29 2 2 0 0 0 0
.............................................................................................GACGACGGTTGCGACGCCTGCTGCT..................................................................................................................................... 25 0 7 0.29 2 2 0 0 0 0
...............................................................................................CGACGGTTGCGACGCCTGCTGCTCTGT................................................................................................................................. 27 0 8 0.25 2 1 0 1 0 0
..............................................................................................................................GTGTCTCCCTGCAACGTTAATCTCG.................................................................................................... 25 0 8 0.25 2 2 0 0 0 0
..........................................................................................................................CCTCGTGTCTCCCTGCAACGTTAATGT...................................................................................................... 27 1 8 0.25 2 0 2 0 0 0
.........................................................................................................................TCCTCGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 28 0 8 0.25 2 2 0 0 0 0
................................................................................TGCGCGCTCACTAGAAGACGGTTGCGA................................................................................................................................................ 27 1 6 0.17 1 1 0 0 0 0
..........................................................................TTGCGCTGCGCGCTCACTAGA............................................................................................................................................................ 21 0 6 0.17 1 1 0 0 0 0
.................................................................CGGTCGCCGTTGCGCTGCGCGCTCACT............................................................................................................................................................... 27 0 7 0.14 1 0 1 0 0 0
.........................................................................................ACTAGACGACGGTTGCGACGCCT........................................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0
.....................................................................................GCTCACTAGACGACGGTTGCGACGCC............................................................................................................................................ 26 0 7 0.14 1 1 0 0 0 0
.............................................................................................GACGACGGTTGCGACGCCTGCTGCTCT................................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
.....................................................................................GCTCACTAGACGACGGTTGCGACGCCT........................................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
.......................................................................................TCACTAGACGACGGTTGCGAC............................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
.............................................................................................GACGACGGTTGCGACGCCTGC......................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
..................................................................................CCCGCTCACTAGACGACGGT..................................................................................................................................................... 20 1 7 0.14 1 0 1 0 0 0
...............................................................AGCGGTCGCCGTTGCGCTGCGCGCTCAC................................................................................................................................................................ 28 0 7 0.14 1 0 1 0 0 0
.................................................................................................................................TCTCCCTGCAACGTTAATCTCGT................................................................................................... 23 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................TGTCTCCCTGCAACGTTAATC....................................................................................................... 21 0 8 0.13 1 1 0 0 0 0
..................................................................................................CGGTTGCGACGCCTGCTGCTCTGTCCT.............................................................................................................................. 27 0 8 0.13 1 1 0 0 0 0
...............................................................................................CGACGGTTGCGACGCCTGCTGCT..................................................................................................................................... 23 0 8 0.13 1 0 1 0 0 0
..........................................................................................................................CCTCGTGTCTCCCTGCAACGTTAATC....................................................................................................... 26 0 8 0.13 1 1 0 0 0 0
...................................................................................................GGTTGCGACGCCTGCTGCTCT................................................................................................................................... 21 0 8 0.13 1 1 0 0 0 0
..................................................................................................................................CTATCTGCAACGTTAATCTCTT................................................................................................... 22 3 8 0.13 1 0 1 0 0 0
..............................................................................................................................GTGTCTCCCTGCAACGTTAATCT...................................................................................................... 23 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................ATGTCTCCCTGCAACGTTAATCT...................................................................................................... 23 1 8 0.13 1 1 0 0 0 0
................................................................................................GACGGTTGCGACGCCTGCTGCTCT................................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0
...................................................................................................................................TCCCTGCAACGTTAATCTCG.................................................................................................... 20 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................TGTCTCCCTGCAACGTTAATCTCG.................................................................................................... 24 0 8 0.13 1 1 0 0 0 0
...................................................................................................GGTTGCGACGCCTGCTGCTCTGTCC............................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0
.................................................................................................................................................ATCTCGTTGCGCCCTTCGTCTGACCC................................................................................ 26 0 8 0.13 1 0 0 1 0 0
................................................................................................................................GTCTCCCTGCAACGTTAATCTCGTT.................................................................................................. 25 0 8 0.13 1 1 0 0 0 0
...........................................................................................................................CTCGTGTCTCCCTGCAACGTTAAT........................................................................................................ 24 0 8 0.13 1 1 0 0 0 0
................................................................................................................................CTCTCCCTGCAACGTTAATCTCGTT.................................................................................................. 25 1 8 0.13 1 1 0 0 0 0
.............................................................................................................................CGTGTCTCCCTGCAAGGTTAATCTCGT................................................................................................... 27 1 8 0.13 1 1 0 0 0 0
.............................................................................................................................CGTGTCTCCCTGCAACGTTGATCTCGT................................................................................................... 27 1 8 0.13 1 1 0 0 0 0
............................................................................................................................TCGTGTCTCCCTGCAACGTTAATCTC..................................................................................................... 26 0 8 0.13 1 1 0 0 0 0
................................................CTAGTACATCGCTGCAGCGGTCGCCGT................................................................................................................................................................................ 27 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................TGTCTCCCTGCAACGTTAATCTCGT................................................................................................... 25 0 8 0.13 1 1 0 0 0 0
........................................................................................................................GTCCTCGTGTCTCCCTGCAACGTTAATCT...................................................................................................... 29 0 8 0.13 1 1 0 0 0 0
.....................................................................................................................................................CGTTCCGCCCTTCGTCTGACC................................................................................. 21 1 9 0.11 1 0 1 0 0 0
....................................CCCGTCCGGCGCCTAGTACATCGCT.............................................................................................................................................................................................. 25 0 19 0.11 2 2 0 0 0 0
.....................................CCGTCCGGCGCCTAGTACATCGCT.............................................................................................................................................................................................. 24 0 19 0.11 2 1 1 0 0 0
..................GTCCTGAGGACCGAACTTCCCGT.................................................................................................................................................................................................................. 23 0 10 0.10 1 1 0 0 0 0
....AGCCGTGTCTCCGTGTCCTGAGGA............................................................................................................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0
..............................................................................................................CTGCTGCTCTGTCCTCGTGTCTCCCT................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
.......CGTGTCTCCGTGTCCTGAGGA............................................................................................................................................................................................................................... 21 0 10 0.10 1 0 1 0 0 0
...................................................................................................................................TCCATGCAACGTCAATCT...................................................................................................... 18 2 13 0.08 1 0 0 1 0 0
.......................................................................CCGTTGCGCTGCGCGCTCACC............................................................................................................................................................... 21 1 14 0.07 1 1 0 0 0 0
..............................GAACTTCCCGTCCGGGGCCTAGTACAT.................................................................................................................................................................................................. 27 1 18 0.06 1 1 0 0 0 0
..............................GAACTTCCCGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 27 0 18 0.06 1 1 0 0 0 0
................................ACTTCCCGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 25 0 18 0.06 1 1 0 0 0 0
..................................................................................................................................................TCTCGTTGCGCCCTTCGTCTG.................................................................................... 21 0 18 0.06 1 0 0 1 0 0
..................................................................................................................................................TCTCGTTGCGCCCTTCGTCT..................................................................................... 20 0 18 0.06 1 1 0 0 0 0
...................................................................................................GGTTGCGCCTCCAGCTGCTC.................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0
.................................CTTCACGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 24 1 19 0.05 1 0 0 1 0 0
..................................TTCCCGTCCGGCGCCTAGTAC.................................................................................................................................................................................................... 21 0 19 0.05 1 1 0 0 0 0
....................................CCCGTCCGGCGCCTAGTACATCGC............................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0 0
....................................CCCGTCCGGCGCCTAGTACATCG................................................................................................................................................................................................ 23 0 19 0.05 1 0 1 0 0 0
..................................CTCCCGTCCGGCGCCTAGTACA................................................................................................................................................................................................... 22 1 19 0.05 1 0 1 0 0 0
....................................CCCGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 21 0 19 0.05 1 0 1 0 0 0
..........................................................................................................................CCTCGTGTCTCCCTGCAACGTTATTCT...................................................................................................... 27 1 19 0.05 1 0 1 0 0 0
.....................................................................................................................................................CGTTGCGCCCTTCGTCTGAC.................................................................................. 20 0 19 0.05 1 1 0 0 0 0
.....................................CCGTCCGGCGCCTAGTACATC................................................................................................................................................................................................. 21 0 19 0.05 1 1 0 0 0 0
......................................CGTCCGGCGCCTAGTACATCGCT.............................................................................................................................................................................................. 23 0 19 0.05 1 0 1 0 0 0
.................................CTTCCCGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 24 0 19 0.05 1 0 1 0 0 0
...................................TCCCGTCCGGCGCCTAGTACATCGCT.............................................................................................................................................................................................. 26 0 19 0.05 1 0 1 0 0 0
...................................ACCCGTCCGGCGCCTAGTACA................................................................................................................................................................................................... 21 1 19 0.05 1 0 1 0 0 0
...................................TCCCGTCCGGCGCCTAGTACAT.................................................................................................................................................................................................. 22 0 19 0.05 1 0 0 1 0 0
.................................................................................................................CTGCTCTGTCCTCGTGTCTCC..................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...............................................CCTAGTTCTTCGCTGCAGC......................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
......................................................................................................TGCGACGCCTGCTGCTCTGTC................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................CCTCGTGTCTCCCTGCAACGTT........................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
........................................................................................................CGACGCCTGCTGCTCTGTCCT.............................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.............................................CGCCTAGTACATCGCTGCAGC......................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................AGCCTGCTGCTCTGTCCTCGTGTCTCCCT................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0
...............................................................................................................TGCTGCTCTGTCCTCGTGTCT....................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
............................................................................................................GCCTGCTGCTCTGTCCTCGTGTCT....................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6482:2685276-2685526 + dmo_896 CCGTTCG--GCACAGAGGCACAGGACTCCTGGCTTGAAGGGCAGGCCGCGGATCATGTAGCGACGTCGCCAGC--GGCAACGCGACGCG--CGAGTGATCTGCTGCCAACG---CTGCGGACGACGAGACAGGAGCACAGAGGGACGTTGCAATTAGAGCAACGCGGGAAGCAGACTGGGGCACCCTCCACAAGAGCGGTG-----------------------------------------------------------------TGACGC---------TAGCTCGACAGCGATGACAGCGAGAGTGATGACGATGATGATGCTAAAGGAGT
droVir3 scaffold_12853:42110-42220 - CCGTTCCG-----------------------------------------------------------------------------------------GTCTGCTCCCAGCGGATCCGG-GACGA--------------------------------------------------------------------------CCGTTGTGGACAGCAGGGTCTCCACCCCAC-------------------------CCG-------CTGCAACTCACGCGGAGGTGGCCCA----------------------TC-AGATGATGAGCCAAGAG----
droGri2 scaffold_15191:848-880 + CG-------------------------------------------------------------------------------------------AGTTATTTGCTGGCGGCA---CTGCGAACGA--------------------------------------------------------------------------CGA-------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301951:1674-1766 - CTTTT-G-----------------------------------------------------------------------------------------------CT---GGGA---CTGCGGACGACGCGATGTTCGCACCGTAGAGTGCTGTCGTCGACCCCAGCCGGGAAGCGGAGTGGGT------CCCCACGACCGGCG-------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000486278:3408-3572 - CCGCCCAGTG--CCAAGGCCAAGGG-----------CAGAGCAGGGTGCGG----TGTGTAGGCGGTGCCAGGAGGGCACGGAGGCGCCACGGAGTCATACGCCGCAGGAA----CACGGACCA--------------------------------------------------------------------------CCA---------------------GCCGATCGCAGTGGATTTATACAGAATCCGGCCAATGCGTGTCG---CAGATGCGG--------------------------------------------------GGGCGC
droRho1 scf7180000761244:6426-6448 - ACTTC-G--ACTCCGAGGAACCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302153:5467-5487 + CCTTTCGAAGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAC
droTak1 scf7180000414471:3868-3925 + TTGCG-A----------------------------------------------------------------GC--GGCAAGGCGATGCA--CTGGTCATCCGCCTCCAGCGAGTCCGAGGACGA--------------------------------------------------------------------------CGA-------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCGTTCG--GCACAGAGGCACAGGACTCCTGGCTTGAAGGGCAGGCCGCGGATCATGTAGCGACGTCGCCAGC--GGCAACGCGACGCG--CGAGTGATCTGCTGCCAACG---CTGCGGACGACGAGACAGGAGCACAGAGGGACGTTGCAATTAGAGCAACGCGGGAAGCAGACTGGGGCACCCTCCACAAGAGCGGTG-----------------------------------------------------------------TGACGC---------TAGCTCGACAGCGATGACAGCGAGAGTGATGACGATGATGATGCTAAAGGAGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGC..................................................................................................................................................................2470.715500000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGAC..............................................................................................................................................................2870.433300000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGA.....................................................................................................................................................................2170.433300000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAG...................................................................................................................................................................2370.292200000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGA...............................................................................................................................................................2770.292200000
.......................................................................................................................................................AATTAGAGCAACGCGGGAAGCAGA...............................................................................................................................................................2470.292200000
.......................................................................................................................................................AATTAGAGCAACGCGGGAAGCA.................................................................................................................................................................2270.292200000
.......................................................................................................................................................AATTAGAGCAACGCGGGAAGC..................................................................................................................................................................2170.292100010
.......................................................................................................................................................AATTAGAGCAACGCGGGAAGCAGAC..............................................................................................................................................................2570.141100000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAGC...............................................................................................................................................................2770.141100000
.......................................................................................................................................................AATTAGAGCAACGCGGGAAGCAG................................................................................................................................................................2370.141100000
.......................................................................................................................................................AATTAGAGCAACGCGGGAAG...................................................................................................................................................................2070.141100000
...................................................................................................................................................TTGCAATTAGAGCAACGCGGG......................................................................................................................................................................2170.141100000
.....................................................................................................................................................GCAATTAGAGCAACGCGGGAAGCAGAC..............................................................................................................................................................2770.141100000
......................................................................................................................................................CAATTAGAGCAACGCGGGAAGCAGAC..............................................................................................................................................................2670.141100000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCA.................................................................................................................................................................2570.141100000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAAGCAA................................................................................................................................................................2670.141100000
....................................................................................................................................................TGCAATTAGAGCAACGCGGGAA....................................................................................................................................................................2270.141100000
.........................................................................................................CCAACG---CTGCGGACGACGAGACA...........................................................................................................................................................................................................2380.131100000
...................................................ATCATGTAGCGACGTCGCCAGC--...................................................................................................................................................................................................................................................................2280.131100000
.........................................................................................................................................................TTAGAGCAACGCGGGAAGCAGACTGG...........................................................................................................................................................2680.131000010
...................................................................................................................................GGAGCACAGAGGGACGTTGCAATTAGA................................................................................................................................................................................2780.131000001
...............................................................................................................................................................CAACGCGGGAAGCAGACTGGG..........................................................................................................................................................2190.111100000
...............AGGCACAGGACTCCTGGCTTGAAGGG.....................................................................................................................................................................................................................................................................................................2690.111000010
...TTCG--GCACAGAGGCACAGGAC....................................................................................................................................................................................................................................................................................................................21100.101000010
.CGTTCG--GCACAGAGGCACAGGA.....................................................................................................................................................................................................................................................................................................................22100.101100000
.....CG--GCACAGAGGCACAGGACTC..................................................................................................................................................................................................................................................................................................................21100.101000010
................................CTTGAAGGGCAGGCCGCGGAT.........................................................................................................................................................................................................................................................................................21180.061000010
............................CTGGCTTGAAGGGCAGGCCGCGGATC........................................................................................................................................................................................................................................................................................26180.061100000
.................................TTGAAGGGCAGGCCGCGGATC........................................................................................................................................................................................................................................................................................21180.061010000
.................................................GGATCATGTAGCGACGTCGCCAG......................................................................................................................................................................................................................................................................23190.051100000
...................................................................................................................................GGAGCACAGAGGGACGTTGCAAA....................................................................................................................................................................................23200.051000001
.........................................................................................................................CGACGAGACAGGAGCACAGAGGG..............................................................................................................................................................................................23200.051100000
...............................................................................................................................GACAGGAGCACAGAGGGACGTC.........................................................................................................................................................................................22200.051000001
droVir3
CCGTTCCG-----------------------------------------------------------------------------------------GTCTGCTCCCAGCGGATCCGG-GACGA--------------------------------------------------------------------------CCGTTGTGGACAGCAGGGTCTCCACCCCAC-------------------------CCG-------CTGCAACTCACGCGGAGGTGGCCCA----------------------TC-AGATGATGAGCCAAGAG----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................CA----------------------TC-AGATGATGAGCCAAGAG----21201.05210000003000001000000000010200000011002010000000000000000000000000
......................................................................................................................................................................................................CCGTTGTGGACAGCAGGGTCTCCAT...............................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TGCAACTCACGCGGAGGTA...................................................1940.251000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................CA----------------------TC-AGATGATGAGCCAAGA.....20200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................CA----------------------TC-AGATGATGAGCCAAG......19200.051000010000000000000000000000000000000000000000000000000000000000
....................................................................................................TGCTCCCAGCGGATCCGG-GACGA--------------------------------------------------------------------------CCG.....................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
CG-------------------------------------------------------------------------------------------AGTTATTTGCTGGCGGCA---CTGCGAACGA--------------------------------------------------------------------------CGA-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droKik1
CTTTT-G-----------------------------------------------------------------------------------------------CT---GGGA---CTGCGGACGACGCGATGTTCGCACCGTAGAGTGCTGTCGTCGACCCCAGCCGGGAAGCGGAGTGGGT------CCCCACGACCGGCG-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCGCCCAGTG--CCAAGGCCAAGGG-----------CAGAGCAGGGTGCGG----TGTGTAGGCGGTGCCAGGAGGGCACGGAGGCGCCACGGAGTCATACGCCGCAGGAA----CACGGACCA--------------------------------------------------------------------------CCA---------------------GCCGATCGCAGTGGATTTATACAGAATCCGGCCAATGCGTGTCG---CAGATGCGG--------------------------------------------------GGGCGCSizeHit CountTotal NormTotal
No Reads
droRho1
ACTTC-G--ACTCCGAGGAACCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCTTTCGAAGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACSizeHit CountTotal NormTotal
No Reads
droTak1
TTGCG-A----------------------------------------------------------------GC--GGCAAGGCGATGCA--CTGGTCATCCGCCTCCAGCGAGTCCGAGGACGA--------------------------------------------------------------------------CGA-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 11:21 PM