ID:

dmo_877

 Coordinate:

scaffold_6482:2255256-2255406 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.9 -29.8 -29.8

Flybase annnotation

CDS [Dmoj\GI14295-cds]; exon [dmoj_GLEANR_14759:1]; intron [Dmoj\GI14295-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
DMRT1CLINER1-
mature
  1. scaffold_1874:1681-1707 -
  2. scaffold_4662:740-766 -
  3. scaffold_4663:5537-5563 -
  4. scaffold_6429:45548-45574 -
  5. scaffold_6446:33140-33166 -
  6. dmo_877  scaffold_6482:2255367-2255393 -
  7. scaffold_6482:2525042-2525068 -
  8. scaffold_6482:2540287-2540313 -
  9. scaffold_6490:3840-3866 -
  10. scaffold_6498:446542-446568 -
  11. scaffold_6498:1604673-1604699 -
  12. scaffold_6498:1927063-1927089 -
  13. scaffold_6498:2399187-2399213 -
  14. scaffold_6500:30386166-30386192 -
  15. scaffold_6540:659498-659524 -
  16. scaffold_6540:1087703-1087729 -
  17. scaffold_6541:340856-340882 -
  18. scaffold_6541:724995-725021 -
  19. scaffold_6541:1752182-1752208 -
  20. scaffold_6541:1809890-1809916 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCCCTGGTGCGGGCGAGGGCATGTGGAAGACGCCAACCACATCCTTTTCGTATGTGGACGGTTCCTGGAGGAGAGGCGTCGTCTAGAAGAGGCACTGGGCGGAGGAAGCTTGGGAACTAACAAGCACCTTCGACATTTTTATTATTATTTATTTATCTTTTTGCATTAAATATATTATTAAATATAAATAACTATTTACAATGAATAATCAATCCTATATTTATTTGTTAAAATAATTGAAATAATTTTA
**************************************************(((.(((((((.(((((...)).))).)))(((((((........)))))))((((..(((((........)))))..)))).......(((((..((((((..(((.(((.......))).)))....))))))..))))))))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V110
male body		 M060
embryo
 V041
embryo
....................................................................................TAGAAGAGGCACTGTGCTGAGT................................................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTAGAAG................................................................................................................................................................. 27 0 20 0.45 9 9 0 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTAG.................................................................................................................................................................... 24 0 20 0.35 7 7 0 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTAGAA.................................................................................................................................................................. 26 0 20 0.30 6 6 0 0 0 0
..................................................................................................GCCGGAGGAAGGTTGGGAT...................................................................................................................................... 19 3 6 0.17 1 0 0 1 0 0
............................................................GGTTCCTGGAGGAGAGGCGTCG......................................................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0
........................................................................................ATAGGCACTGGGCGAAGTAA............................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTAAT................................................................................................................................................................... 25 2 20 0.10 2 2 0 0 0 0
...........................AAGACGCCAACCACATCCTTTTC......................................................................................................................................................................................................... 23 0 20 0.10 2 0 0 0 2 0
..............................................................TTCCTGGAGGAGAGGCGTCGT........................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
................................................................................CGTCTAGAAGAGGCACTGGGC...................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
...............................CGCCAACCACATCCTTTTCGTATGT................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................GGACGGTTCCTGGAGGAGAGGC............................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 1 0
...............................................................TCCTGGAGGAGAGGCGTCGTCAA..................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
...........................AAGGCGCCAACCACATCCTTTTCGTA...................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...........................AAGACGCCAACCACATCCTTTTCGTA...................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................AGACGCCAACCACATCCTTTTCGTATG.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........................AAGACGCCAACCACATCCTTTTCGTATG.................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTT..................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 1
.......................................................TGGACGGTTCCTGGAGGAGAGG.............................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...............................................................TCCTGGAGGAGAGGCGTCGTCTAGAAGA................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
..............................................................GTCCTGGAGGAGAGGCGTCGTCTAG.................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
..........................................................ACGGTTCCTGGAGGAGAGGCGTCGTC....................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0
..............................ACGCCAACCACATCCTTTTCGTATG.................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGGGGACCACGCCCGCTCCCGTACACCTTCTGCGGTTGGTGTAGGAAAAGCATACACCTGCCAAGGACCTCCTCTCCGCAGCAGATCTTCTCCGTGACCCGCCTCCTTCGAACCCTTGATTGTTCGTGGAAGCTGTAAAAATAATAATAAATAAATAGAAAAACGTAATTTATATAATAATTTATATTTATTGATAAATGTTACTTATTAGTTAGGATATAAATAAACAATTTTATTAACTTTATTAAAAT
**************************************************(((.(((((((.(((((...)).))).)))(((((((........)))))))((((..(((((........)))))..)))).......(((((..((((((..(((.(((.......))).)))....))))))..))))))))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V056
head
..............................................AAAGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 27 0 20 7.70 154 141 10 1 1 1
................................................AGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 25 0 20 4.45 89 84 5 0 0 0
.........CGCCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 28 0 20 3.85 77 30 42 4 0 1
.................................................GCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 24 0 20 2.45 49 45 0 4 0 0
...............................................AAGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 26 0 20 2.30 46 45 0 0 1 0
.........................................................................................CTCCGTGACCCGCCTCCTTCGAACCCT....................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0
.............CGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 24 0 20 2.00 40 39 0 0 1 0
...........CCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 26 0 20 1.20 24 0 24 0 0 0
............CCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 25 0 20 1.20 24 23 0 1 0 0
..........................................................................................TCCGTGACCCGCCTCCTTCGAATCCT....................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
..........GCCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 27 0 20 0.75 15 7 8 0 0 0
............CCGCTCCCGTACACCTTCTGCGGGT...................................................................................................................................................................................................................... 25 1 20 0.65 13 0 13 0 0 0
..................................................CATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 23 0 20 0.65 13 10 3 0 0 0
..............................................AAAGCATACACCTGCCAAGGACCTCC................................................................................................................................................................................... 26 0 20 0.55 11 9 2 0 0 0
................................................AGCATACACCTGCCAAGGACCTCC................................................................................................................................................................................... 24 0 20 0.35 7 7 0 0 0 0
............................................................CCAAGGACCTCCTCTCCGCAGCAGAT..................................................................................................................................................................... 26 0 20 0.35 7 0 7 0 0 0
............CCGCTCCGGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 25 1 20 0.25 5 0 5 0 0 0
...........................................GGAAAAGCATACACCTGCCAAGGACCT..................................................................................................................................................................................... 27 0 20 0.25 5 3 2 0 0 0
................................................................GGACCTCCTCTCCGCAGCAGATCTT.................................................................................................................................................................. 25 0 20 0.25 5 2 3 0 0 0
....................................................TACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 21 0 20 0.25 5 5 0 0 0 0
.........CGCCCGCTCCCGTACACCTTCTGCGGGT...................................................................................................................................................................................................................... 28 1 20 0.25 5 0 5 0 0 0
...........CCCGCTCCCGTACACCTTCTGCGGGT...................................................................................................................................................................................................................... 26 1 20 0.25 5 0 5 0 0 0
...................................................................................................CGCCTCCTTCGAACCCTTGATTGTT............................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
................................................................GGACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 24 0 20 0.25 5 5 0 0 0 0
..........................................AGGAAAAGCATACACCTGCCAAGGACCT..................................................................................................................................................................................... 28 0 20 0.25 5 2 0 0 3 0
..............................................................AAGGACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 26 0 20 0.20 4 2 2 0 0 0
...........CCCGCTCCCGTACACCTTCTGCGCTT...................................................................................................................................................................................................................... 26 1 20 0.20 4 0 4 0 0 0
.GGGGACCACGCCCGCTCCCGTACACCTT.............................................................................................................................................................................................................................. 28 0 20 0.20 4 2 2 0 0 0
............CCGCTCCCGTACACCTTCTGCGGT....................................................................................................................................................................................................................... 24 0 20 0.20 4 2 2 0 0 0
.............................................AAAAGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 28 0 20 0.20 4 4 0 0 0 0
..............GCTCCCGTACACCTTCTGCGGT....................................................................................................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0
............CCGCTCCTGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 25 1 20 0.20 4 0 4 0 0 0
......CCACGCCCGCTCCCGTACACCTT.............................................................................................................................................................................................................................. 23 0 20 0.15 3 0 3 0 0 0
...................................................ATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 22 0 20 0.15 3 0 2 1 0 0
...........CCCGCTCCCGTACACCTTCTGCGGT....................................................................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0
................................................AGCATACACCTGCCAAGGACCTCGT.................................................................................................................................................................................. 25 1 20 0.10 2 0 2 0 0 0
..........GCCCGCTCCCGTACACCTTCTGCGGT....................................................................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
.............................................................CAAGGACCTCCTCTCCGCAGCAGATCTT.................................................................................................................................................................. 28 0 20 0.10 2 0 2 0 0 0
......................................................................CCTCTCCGCAGCAGATCTTCTCCG............................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
............CCGCTCCCGTACACCTTCTGCTGTT...................................................................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0
............CCGCTCCCGTACACCTTCTGCGGTTC..................................................................................................................................................................................................................... 26 1 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................................................................................AAAAAAAATTTTATTAACTTTTTTA.... 25 3 20 0.10 2 2 0 0 0 0
............CCGCTCCCGTACACCTTCTTCGGTT...................................................................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0
............................................GAAAAGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 29 0 20 0.10 2 1 1 0 0 0
............CCGCTCCCGTACACCTTCTGCGGTTGGT................................................................................................................................................................................................................... 28 0 20 0.10 2 0 2 0 0 0
............CCGCTCCCGTACACCTTCTGCGCTT...................................................................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0
..............................................................AAGGACCTCCTCTCCGCAGCAGATCTT.................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0 0
............CCGCTCCCGTACACCTTCTGC.......................................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
.........................................TAGGAAAAGCATACACCTGCCAAGGACCT..................................................................................................................................................................................... 29 0 20 0.10 2 2 0 0 0 0
...................................................................................................CGCCTTCTTCGAACCCTTGATTGTTCGTG........................................................................................................................... 29 1 14 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAAAATTTTATTAACTTTTTTA.... 26 3 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................................AAAAAATTTTATTAACTTTTTTA.... 23 2 18 0.06 1 1 0 0 0 0
................................................AGCATACACCTGCCAAGGACCTC.................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
............CCGCTCCGGTACACCTTCTGCGCTT...................................................................................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
................TCCCGTACACCTTCTGCGGTTGGT................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
..................................................................ACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
.....................................GGTGTAGGAAAAGCATAC.................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0
............................................................CCAAGGACCTCCTCTCCGCAGCAGATCTT.................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
..............................................TATGCATACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 27 2 20 0.05 1 1 0 0 0 0
.GGGGACCACGCCCGCTCCCGTACACCT............................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
............................................................CCAAGGACCTCCTCTCCGCAGCAGATC.................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
....GACCACGCCCGCTCCCGTACACCTT.............................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...........CCCGCTCCCGTACACCTTCTGCGGTTCT.................................................................................................................................................................................................................... 28 2 20 0.05 1 0 1 0 0 0
............................................................CCAAGGCCCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
...............................................................AGGACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
........ACGCCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
..............................................................AAGGACCTCCTCTCCGCAGCAGATCTTCT................................................................................................................................................................ 29 0 20 0.05 1 1 0 0 0 0
........................................TTAGGAAAAGCATACACCTGCCAAGGAC....................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.........CGCCCTCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
......................ACACCTTCTGCGGTTGGTGTAGGA............................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
............................................................................................................CGAACCCTTGATTGTTCGTGGAAGCTC.................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
..............................................AAAGCATACACCTGCCAAGGACCGCCT.................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0
..........................................AGGAAAAGCATACACCTGCCAAGGACCC..................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...........................................GGAAAAGCATACACCTGCCAAGGAC....................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
.....................TACACCTTCTGCGGTTGGTGTAGGA............................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...GGACCACGCCCGCTCCCGTACACCTT.............................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
............CCGCTCCCGTACACCTTCTG........................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
................................CGGTTGGTGTAGGAAAAGCATACA................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0
..............CCTCCCGTACACCTTCTGCGGTTGGT................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..........................................................TGCCAAGGACCTCCTCTCCGCAGCAGAT..................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.GGGGACCACGCCCGCTCCCGTACAC................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...........CCCGCTCCCGTACAACTTCTGCGGTT...................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...........ACCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
.........................................AAGGAAAAGCATACACCTGCCAAGGAC....................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
.........CGCGCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
....................................................................CTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
............CAGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
............................................GAAAAGCATACACCTGCCAAGGACCT..................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.............................................................CAAGGACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..........CCCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
....................................................................................................GCCTCCTTCGAACCCTTGATTGTTCGT............................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
............................................GAAAAGCATACACCTGCCAAGGAC....................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.........AGCCCGCTCCCGTACACCTTCTGCGGCT...................................................................................................................................................................................................................... 28 2 20 0.05 1 0 1 0 0 0
............CCGCTCCCGTACACCTTCCGCGGTT...................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
...................................................................................................CGCCGCGTTCGAACCCTTC..................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................TCCCGTACACCTTCTGCGGTTGTT................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
..................CCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
..........................................................................TCCGCAGCAGATCTTCTCCG............................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...............................................AAGCATACACCTGCCAAGGACCTCCTCT................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
................................................................GGACCTCCTCTCCGCAGCAGATCGT.................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
.........CGCCCGCTCCCGTACACCTTCTGCGCTT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.............................CTGCGGTTGGTGTAGGAAAAG......................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
.........CGTCCGCTCCCGTACACCTTCTGAGGTT...................................................................................................................................................................................................................... 28 2 20 0.05 1 0 0 1 0 0
................................................AGCATACACCTGCCAAGGACCTCCTCT................................................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0
.............................................................AAAGGACCTCCTCTCCGCAGCAGATCT................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
.................................................GCATACACCTGACAAGGACCTCCT.................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
............................................................................CGCAGCAGATCTTCTCCGTGA.......................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.........TGCCCGCTCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
............................................................CCAAGGACCTCCTCTCCGCAGCAGGT..................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..........GCCCGCTCCCCTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
...............................................AAGCATACCCCTGCCAAGGACCTCCT.................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.........CGCCCGCTCCCGTACACCTTCTTCGGTT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.................CCCGTACACCTTCTGCGGTTGGT................................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
................................CGGTTGGTGTAGGGAAAGCATACA................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
.......................................................................CTCTCCGCAGCAGATCTTCTCCGT............................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
.......CACGCCCGCTCCCGTACACCTT.............................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
.GGGGACCACGCCCGCTCCCGT..................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.................................................GCATACACCTGCCGAGGACCTCCT.................................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0
...........................TTCTGCGGTTGGTGTAGGAAAAGCAT...................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.............................................................CAAGGACCTCCTCTCCGCAGCAGAT..................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
........................................GTAGGAAAAGCATACACCTGCCAAGGAC....................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
...GGACCACGCCCGCTCCCGTACACCTTC............................................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
..GGGACCACGCCCGCTCCCGTACACCTTCT............................................................................................................................................................................................................................ 29 0 20 0.05 1 1 0 0 0 0
...........................TTCTGCGGTTGGTGTAGGAAA........................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..................................................................................................CAGCCTCCTTCGAACCCTTGATTGTT............................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..............................................AAAGCACACACCTGCCAAGGACCTCCT.................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
..........GCCCGCTCCCGTACACCTTCT............................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
...........CCCGCTCCCGTACACCGT.............................................................................................................................................................................................................................. 18 1 20 0.05 1 0 1 0 0 0
.........................................................................CTCCGCAGCAGATCTTCTCCG............................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
...........................................GGAAAAGCATACACCTGCCAAGGA........................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
..................CCGTACACCTTCTGCGGTTGGTG.................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
.....................................................ACACCTGCCAAGGACCTCCTCTCCGC............................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
.............CGCTCCCGTACACCTTCTGCGGTTGGTGT................................................................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
...........CCCGCGCCCGTACACCTTCTGCGGTT...................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6482:2255206-2255456 - dmo_877 ACCCCTGG-TGCGGGCGAGGGCATGTGGAAGACGCCAACCACATCCTTTTCGTATGTGGACGGTTCCT--GGA---------------------GGAGAGGCGTCGTCT-AGAAGAGGCAC------------------------------------------------------------------------------------------------------------------TGGGCGGAGGAAGCTTGGGAACTAACAAGCACCTTCGACATTTTTATTATT--------------------------------------ATTT------------------------------AT--TTATCTTTTTGCA----------TTAAATATATTA----------TTAA--------------------ATATAAATAACTATT------------------------------TA---C-------------------------------------------------------------------------------------------------AATGAATAATCA-------ATCCTATATTTA---TTTGTTAAAATAATTGAAATAATTTTA
droVir3 scaffold_294:742-1017 - ACCCGTTT-TGCAGACACTGGGCCATGAAAGACGCTAAACATGTCTTTTTCGTTTGACAGAGATTCTC--CGC---------------------TGAAAGGAAAGAGATTGTAAGCAGAAA------------------------------------------------------------------------------------------------------------------TTGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATATGGT----------------------------------CTGTGTGATCAA-TTATCTTGACGTTGTTTGCAACGTTGGCAGTATTGTTTTTCGCATCACTAGAATCAATAAACCATCCCATTATGTA-ATTTA---TTTGTAAAAAAAATTTGATTAACGTTC
droGri2 scaffold_15245:15370574-15370706 - CATATTTT-TTATTAGTTAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----TGTT----------ACATGAACATGTTTATATATATATAAGT------------------------------ATATATATATATAT-----------------------------------------A---------TCAATTTAT-----------ATGT-----------GCCTGTTGTTGC-TGC-----------------------------------------TATGTCCTTT------TTTCAGATCGTTGCGGGTATTGTA
droWil2 scf2_1100000004963:176690-176935 - GCACCCTGAGGCAAAGGCTAAGGGCAG-------------------------------------------------------------------------------------------TTATTGGAGAAAAGCCCATACCTTCCAACTTGGTAAAGATGATGATCACATCCCGATTGGCGTGGTCGGCCGCGGTAGACCTGCGAAGCAATACCACAAGGCAGTCC---CGCAG-GA--------GCCCTATAGTAACAA------------------AAAATTCCC--------------------------------------T--------------TCATTTTCTCTTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTTTG--TCTTTTTTGTATAT--------------------------------------------------------------------------------------------------------------------------AAAATATTTTTTCCTATTTCAACAACTAATAAATGAAT
dp5 Unknown_group_396:4601-4724 - ATCCTGCG-GTCG----AGGCATCGTGGAGGACGCCTATCACGTCTTCTTCGAGTGCCATCGCTTCGA--ATA---------------------TGAGAGGTGTCAGCT-AGAGGCCGAGC------------------------------------------------------------------------------------------------------------------TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGAGGGAGCTTG
droPer2 scaffold_85:57775-57905 - GCCCCGAG-TGTGGCACAGGCATTAAGAAGAACGCTCGTCACGTCCTCTTCGACTATCACAGGTTTGA--CCA---------------------TGAGCGTCAGATACT-GGAGGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTGCAAGAATTAACAA
droAna3 scaffold_12905:518049-518160 - TTTATTTT-TATTCAATAATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----TGTG----------TTTAATATATTA----------TTAA--------------------AG----------TTTTTCAAAAGTAT-----------------------------------------TTTAAATAGATCA---------------------------------------------------------------------------------------ATTCAACAATTTT--T-GATCATGGGATACGAAATTCTATTT
droBip1 scf7180000395406:6055-6181 - CTAACAAA-GA-------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------TTACAAA--------------------------------GTTTAAATTGTT--------------------------------------TTGATTTAATC---------------------------------------------AT-------------------------ATAACTATAATATA-----------------------------------------TG--TTATTTTAACATATT----------------------------------ATATGTAATTATTACA--------------------------------------------ACAAAA-------------------------CTAA---TAGATATCTATGATAGAAATAATTTTA
droKik1 scf7180000302226:6063-6320 + GTCCGGAT-TGCGGATCCGGTATAACTGAGGATGCGAGACATATCTTCTTCGAGTGTCGCGGATTCGA--CGA---------------------GGAAAGGGACGGGCC-------CGTGC-------------------------------------------------------------------------------------------------------CCCG----T-CA--------ATACT-----------------------------------CCGTCAATTCACATTTGTTAGTTATGTAGATTTGTTAGTTGTCAATTAA----------------------------------------------------------------------ACGAATATATTAAGTATTAACTTATTTAAC----------TCTTTGAAGAATTCATTTACGCCCTTTTTTCTGTTGTC----------------------------------T------------------------------------------------------------------------------------TATGCCCTTT--TTTCTGTTAAATAATTATGGTTGTATTT
droFic1 scf7180000452317:18078-18186 - TCGTCATT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC--------------------------------------GT---------------------------------------------CATTTCATTAATA-------ACATTT----------------------TC-AA-------TAAAAT---------------------------------ATAAATATTTG--A------------------------TAAGTTCGC-----------TTT---------------------------------------------------------------------TCTAAATTTTAAGTTCAGAAACAAAATTTAAATAACTTTT
droEle1 scf7180000490294:14261-14542 + TCCCACAG-TGCGAAATTGTGGATGACAA-------GTCAGCGTCTCATTTGAGTGCCGAGAGTACCC--ACA---------------------GACTTGAAAACATGC-GA-------------------------------------------------GGCGAAATCTGCATTCGCAGTGAGCGAAGCGGCAGACTTGG-------------------TGGCCAG--------------------------------TACTTCCGCTAGCCAAT-------------------------------------------------TCCTTGCCC-------TGTTATAT--------GGGTATATATGTTCTTTAG------------ATTTA-----------------GTACATAATA-AA-------TA---AAAAACAAAC------------------------------TC---TGAAAATTTAATACTATTTTGCATTAACAA---------------------------------------------------------------------------------------AGCGAAAACTTTG--TGAACGCAGTAGTTCGAGACGATTTTA
droRho1 scf7180000774732:19196-19277 + ATTATTAT-TTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TT----------------GT---------------------------------------------------------------------------ATTTTCGTATTATTTTATTGTATT----------------------------------A------------------------------------------------------------------------------------TTTATTATTT--ATTTTA---TTATTTAATAATAGTTTTA
droBia1 scf7180000301232:26818-27043 + GCCCACTC-TGCGAGTCGGATA---ATGAAGACGCAGAGAACGTATTTTTTGTCTGTCCGAGATTTGG--AAA---------------------TGAACGTCGAGATCT-GAGCATAAGGG------------------------------------------------------------------------------------------------------------------TTGGGAG--------------------------------GATTTATTTATT--------------------------------------TT---------------------------------------TCTCTTA------TGAATG----GCTTTA-----------------CTACAAAATG-----------------------------------------TA--TTCTATAAACATTTT--T------------------------TTAATCTAT-----------CCTT-----------GTGAACTGTCTG-AGT-----------------------------------------TTTGTTTTTTG--T-GTTTAAAATTGTTATATTATTATTA
droTak1 scf7180000414140:10389-10538 + GCCTCCAA-TGTGGAGTGGA------GAAGACCGGCCAGCACGTGACCTTCACCTGCTCACGGTTTTA--GCG---------------------TGAAAGGGAAGAATT-CCTAGGCGAGA------------------------------------------------------------CAAGGGACCCTGTTGCCCTGG---------------------------------GAGACCG------------------CATGTACGGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTCAAACATTTTTTAT
droEug1 scf7180000409005:631518-631616 + GCCCGTCG-TGCGGCAGTGGAGTCACAGAGGACCCTCTCCACGTCCTCTTTGAATGTAGGAGATTTGT--GGA---------------------GGATCGCCTAACCAT-GGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCCTGG
dm3 chrU:2114597-2114848 - GCCCATGG-TACGGAAGTGGACGTAGCGAAACAGCTGAGCACCA---------------GGAGGGTTCACGAGTGAGCAAATCCTGATCGTCCTCGCGAAAAAATGCTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGCGGGGA--------GTCCTG----------------------------------------------------------------------------GATTTGCCCACCTTAATGTTATATTGTTATTTAA--AT----------------AGTTAATCTTAATGGTTCAATAAACGAATAAAT------------------------------AAAAAAAAACACAC-----------------------------------------AGTAGTTTGATAT---------------------------------------------------------------------------------------GTCAGAAATTTT--TTGTTTTTGAATAA--TTTACCATTTTT
droSim2 2r:1417034-1417140 - CCCCATGG-TGCGGAAGTGGACGGAGTAAAACCCCAGAGCACAATCTCTTCTCGTGCGAAAAATATGC--AAG---------------------CGAAAGGAGATCCCT-GTAAACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA
droSec2 scaffold_1726:4067-4185 + TCTTATTA-TTATATATTAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATATATT------------ATATT--A---------------TATATTAT-----------TAATATATATATATA------------------------------TA---TGTAATTTAATTATTA-------------------------------------------------------------------------------------------------------TATTATATATA--T-ATATATATATATATATATATATATT
droYak3 v2_chr3h_random_002:648999-649101 + GTCCATGG-TGCAGAAGAGGATGGTGG----GAAACCTCAAAGTTCTCTTTTCATGCGGGAAGTTCGC--TAG---------------------CGAGAGGAGATTCCT-GGAAGCCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA
droEre2 scaffold_4895:145801-145922 - GTCCCTGGAAGCGGAAGCGGACAGTGCGAGACCCAAGAGCACGTGCTCTTCTCGTGCGGAAAGTTCGT--TTG---------------------CGAGAGGAAGTCCCT-AGAAGCCGTGC------------------------------------------------------------------------------------------------------------------TTAGCGGCGGCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGTAATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACCCCTGG-TGCGGGCGAGGGCATGTGGAAGACGCCAACCACATCCTTTTCGTATGTGGACGGTTCCT--GGA---------------------GGAGAGGCGTCGTCT-AGAAGAGGCAC------------------------------------------------------------------------------------------------------------------TGGGCGGAGGAAGCTTGGGAACTAACAAGCACCTTCGACATTTTTATTATT--------------------------------------ATTT------------------------------AT--TTATCTTTTTGCA----------TTAAATATATTA----------TTAA--------------------ATATAAATAACTATT------------------------------TA---C-------------------------------------------------------------------------------------------------AATGAATAATCA-------ATCCTATATTTA---TTTGTTAAAATAATTGAAATAATTTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-AGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.459900000
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.357700000
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-AGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.306600000
.............................................................GGTTCCT--GGA---------------------GGAGAGGCGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153300000
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-AAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
............................AAGACGCCAACCACATCCTTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000020
...............................................................TTCCT--GGA---------------------GGAGAGGCGTCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................CGTCT-AGAAGAGGCAC------------------------------------------------------------------------------------------------------------------TGGGC................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
................................CGCCAACCACATCCTTTTCGTATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.........................................................GGACGGTTCCT--GGA---------------------GGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
............................AAGACGCCAACCACATCCTTTTCGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.............................AGACGCCAACCACATCCTTTTCGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
............................AAGACGCCAACCACATCCTTTTCGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
........................................................TGGACGGTTCCT--GGA---------------------GGAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
................................................................TCCT--GGA---------------------GGAGAGGCGTCGTCT-AGAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...........................................................ACGGTTCCT--GGA---------------------GGAGAGGCGTCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
...............................ACGCCAACCACATCCTTTTCGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
droVir3
ACCCGTTT-TGCAGACACTGGGCCATGAAAGACGCTAAACATGTCTTTTTCGTTTGACAGAGATTCTC--CGC---------------------TGAAAGGAAAGAGATTGTAAGCAGAAA------------------------------------------------------------------------------------------------------------------TTGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATATGGT----------------------------------CTGTGTGATCAA-TTATCTTGACGTTGTTTGCAACGTTGGCAGTATTGTTTTTCGCATCACTAGAATCAATAAACCATCCCATTATGTA-ATTTA---TTTGTAAAAAAAATTTGATTAACGTTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AAT.....................................................................................................................................................................................................................................................................2628.0016001020000000000001000001003100000001402000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCCAT..........................................2634.3313008000000000000000000000011100001000100000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATT....................................................................................................................................................................................................................................................................2723.006001000000000100000000000211000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCCA...........................................2531.675002000000000000000000000002100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATAT..................................................................................................................................................................2691.2211001000000000000000000000110300002001110000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATATGG................................................................................................................................................................2821.002002000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCAATAAACCATCCCATTATGT.....................................2731.003002000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AA......................................................................................................................................................................................................................................................................2521.002000100000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATTA...................................................................................................................................................................................................................................................................2821.002001000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGAATCAATAAACCATCCCATTA........................................2731.003003000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATA...................................................................................................................................................................2590.787006000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTAT....................................................................................................................................................................2490.676000000000000000000000000021000000003000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAATCAATAAACCAT...............................................1830.672000000000000000000000000200000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATTT...................................................................................................................................................................................................................................................................2820.501000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA-TTATCTTGACGTTGTTTGC.............................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAA-TTATCTTGACGTTGTTTGC.............................................................................................2620.501000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATCC...................................................................................................................................................................................................................................................................2820.501001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TAAGCAGAAA------------------------------------------------------------------------------------------------------------------TTGTAAG--------------------------------ACTGACAT......................................................................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTA-ATTTA---TTTGTAAAAAAAATT............2620.501000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATT........................................................................................................................................................................2480.504004000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTAAG--------------------------------ACTGACATTATC--------------------------------------GTGAT-----------------------------------------------AATC....................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTT.......................................................................................................................................................................2580.383000100000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCC............................................2430.331000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGATCAA-TTATCTTGACGTTGTCC...............................................................................................2830.331001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGAATCAATAAACCATCCCA...........................................2430.331001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCCATA.........................................2730.331001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCCATC.........................................2730.331001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAATCAATAAACCATCCCATTATG......................................2730.331000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAACCATCCCATTATG......................................1930.331001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCAATAAACCATCCCATTATG......................................2630.331001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAGAATCAATAAACCATCCCATTA........................................2830.331001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATCAATAAACCATCCCATTATGTA-A..................................2930.331001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATAT..................................................................................................................................................................2980.252001000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTT.......................................................................................................................................................................2480.131001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATAT..................................................................................................................................................................2880.131000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTA.....................................................................................................................................................................2580.131001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTAT....................................................................................................................................................................2780.131000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTT......................................................................................................................................................................2680.131001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTA.....................................................................................................................................................................2780.131001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGAT.........................................................................................................................................................................2280.131000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAATA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTA.....................................................................................................................................................................2680.131001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTATC...................................................................................................................................................................2590.111001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TA-------ACAGGA----------------------TC-CA-------CAA---------------------------------CGATTTTA.....................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TATC--------------------------------------GTGAT-----------------------------------------------AATTAATA-------ACAGGA----------------------TC-CA-------CA...............................................................................................................................................................................................................29100.101000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................C--------------------------------------GTGAT-----------------------------------------------AATTAATA-------ACAGGA----------------------TC-CA-------CA...............................................................................................................................................................................................................26110.091000000000000000000000000010000000000000000000000000000000000000
droGri2
CATATTTT-TTATTAGTTAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----TGTT----------ACATGAACATGTTTATATATATATAAGT------------------------------ATATATATATATAT-----------------------------------------A---------TCAATTTAT-----------ATGT-----------GCCTGTTGTTGC-TGC-----------------------------------------TATGTCCTTT------TTTCAGATCGTTGCGGGTATTGTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCACCCTGAGGCAAAGGCTAAGGGCAG-------------------------------------------------------------------------------------------TTATTGGAGAAAAGCCCATACCTTCCAACTTGGTAAAGATGATGATCACATCCCGATTGGCGTGGTCGGCCGCGGTAGACCTGCGAAGCAATACCACAAGGCAGTCC---CGCAG-GA--------GCCCTATAGTAACAA------------------AAAATTCCC--------------------------------------T--------------TCATTTTCTCTTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTTTG--TCTTTTTTGTATAT--------------------------------------------------------------------------------------------------------------------------AAAATATTTTTTCCTATTTCAACAACTAATAAATGAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................AACTTGGTAAAGATGATGATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2427.0014013010
.............................................................................................................................................................................................................................................................................................................................................................TTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTTTG--TCTTTTTTG.....................................................................................................................................................................2712.00202000
................................................................................................................................................AACTTGGTAAAGATGATGATCACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2522.00401030
.................................................................................................................................................................................................................TACCACAAGGCAGTCC---CGCAG-GA--------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
................................................................................................................................................................TGATCACATCCCGATTGGCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200020
...............................................................................................................................................................................................................................................................ACAA------------------AAAATTCCC--------------------------------------T--------------TCATTTTCTCT..................................................................................................................................................................................................................................................................................................2511.00101000
..............................................................................................................................................................................TTGGCGTGGTCGGCCGCGGTAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.......................................................................................................................................................................................................................................................CTATAGTAACAA------------------AAAATTCCC--------------------------------------T--------------TCAT.........................................................................................................................................................................................................................................................................................................2611.00101000
...............................................................................................................................................................................TGGCGTGGTCGGCCGCGGTAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
....................................................................................................................................................................................................................................................................................................................................T--------------TCATTTTCTCTTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTT..................................................................................................................................................................................2711.00101000
..............................................................................................................................................................................TTGGCGTGGTCGGCCGCGGTAGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
.................................................................................................................................................ACTTGGTAAAGATGATGATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.00202000
........................................................................................................................................................................................................................................................TATAGTAACAA------------------AAAATTCCC--------------------------------------T--------------TCA..........................................................................................................................................................................................................................................................................................................2411.00101000
....................................................................................................................................................................................................................................CGCAG-GA--------GCCCTATAGTAACAA------------------AAAAT......................................................................................................................................................................................................................................................................................................................................................................2711.00100010
......TGAGGCAAAGGCTAAGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.00201010
........................................................................................................................................................................TCCCGATTGGCGTGGTCGGCCGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................23120.9211010100
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAGTCC---............................................................................................................................................................................................................................................................................................................................................................................................................................24120.75908100
.........................................................................................................................................................AAGATGATGATCACATCCCGATTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000
.............................................................................................................................................................TGATGATCACATCCCGATTGGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50101000
.........................AG-------------------------------------------------------------------------------------------TTATTGGAGAAAAGCCCATACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
...............................................................................................................................................CAACTTGGTAAAGATGATGATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
................................................................................................................................................AACTTGGTAAAGATGATGATCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000
.................................................................................................................................................ACTTGGTAAAGATGATGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
......................GGCAG-------------------------------------------------------------------------------------------TTATTGGAGAAAAGCCCATACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100010
..............................................................................................................................GAAAAGCCCATACCTTCCAACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000
.........GGCAAAGGCTAAGGGCAG-------------------------------------------------------------------------------------------TTATTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
.............................................................................................................................................................TGATGATCACATCCCGATTGGCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100010
....................................................................................................................................................................CACATCCCGATTGGCGTGGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
................................................................................................................................................AACTTGGTAAAGATGATGATCACATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000
..........................................................................................................................................................AGATGATGATCACATCCCGATTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50101000
..............................................................................................................................GAAAAGCCCATACCTTCCAACTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
.............................................................................................................................................................................................................................................................................................................................................................TTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTTTG--TCTTTGGC......................................................................................................................................................................2620.50101000
.............................................................................................................................................................................................................................................................................................................................................................TTCTT----GT--CT----------------AT---------------------------------------------------------------------------ACTTTTG--TCTTT.........................................................................................................................................................................2320.50101000
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................22120.50605100
............................................................................................................................................................ATGATGATCACATCCCGATTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000
.............................................................................................................................................TCCAACTTGGTAAAGATGATGATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100010
..............................................................................................................................................................GATGATCACATCCCGATTGGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
..................TAAGGGCAG-------------------------------------------------------------------------------------------TTATTGGAGAAAAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
......................................................................................................................................................................CATCCCGATTGGCGTGGTCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
................................................................................................................................................AACTTGGTAAAGATGATGATCACATCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100010
................................................................................................................................................AACTTGGTAAAGATGATGATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
..........GCAAAGGCTAAGGGCAG-------------------------------------------------------------------------------------------TTATTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000
.........................................................................................................................................................AAGATGATGATCACATCCCGATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000
.......................................................................................................................................................................ATCCCGATTGGCGTGGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000
.................................................................................................................................................ACTTGGTAAAGATGATGATCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
..........................................................................................................................................................................................................GAAGCAATACCACAAGGCAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................22140.21303000
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAGTCC---C...........................................................................................................................................................................................................................................................................................................................................................................................................................25110.18200020
..............................................................................................................................................................................................................CAATACCACAAGGCAGTCC---CGCA........................................................................................................................................................................................................................................................................................................................................................................................................................23120.17202000
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................21120.17201010
..........................................................................................................................................................................................................GAAGCAATACCACAAGGCAGTCC---............................................................................................................................................................................................................................................................................................................................................................................................................................23140.14202000
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCAGTCC---CGC.........................................................................................................................................................................................................................................................................................................................................................................................................................27110.09101000
...............................................................................................................................................................................................................AATACCACAAGGCAGTCC---CGCAG-G.....................................................................................................................................................................................................................................................................................................................................................................................................................24110.09101000
............................................................................................................................................................................................................AGCAATACCACAAGGCAGTCC---CGCAG-GA--------............................................................................................................................................................................................................................................................................................................................................................................................................28110.09101000
.....................................................................................................................................................................................................CCTGCGAAGCAATACCACAAGGCAGTCC---............................................................................................................................................................................................................................................................................................................................................................................................................................28120.08100010
......................................................................................................................................................................................................CTGCGAAGCAATACCACAAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................23120.08101000
.......................................................................................................................................................................................................TGCGAAGCAATACCACAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................20120.08100010
.........................................................................................................................................................................................................CGAAGCAATACCACAAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................20120.08101000
....................................................................................................................................................................................................................CACAAGGCAGTCC---CGCAG-GA--------............................................................................................................................................................................................................................................................................................................................................................................................................20130.08101000
............................................................................................................................................................................................................AGCAATACCACAAGGCAGTCC---CG..........................................................................................................................................................................................................................................................................................................................................................................................................................23130.08101000
..............................................................................................................................................................................................................CAATACCACAAGGCAGTCC---CGC.........................................................................................................................................................................................................................................................................................................................................................................................................................22130.08101000
dp5
ATCCTGCG-GTCG----AGGCATCGTGGAGGACGCCTATCACGTCTTCTTCGAGTGCCATCGCTTCGA--ATA---------------------TGAGAGGTGTCAGCT-AGAGGCCGAGC------------------------------------------------------------------------------------------------------------------TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGAGGGAGCTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGAG........2422.0040300001000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGCT-AGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2531.0030300000000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGCT-AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.6720200000000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGCT-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.6720200000000
...........................................................................................................................................................................................................................................TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGA.........2320.5010100000000
............................................................................................................................................................................................................................................AGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGAG........2320.5010100000000
...........................................................................................................................................................................................................................................TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGGAGGGA.....2720.5010100000000
....................................................................................................................CGAGC------------------------------------------------------------------------------------------------------------------TAGCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATCAGCATCGG..........2720.5010100000000
.TCCTGCG-GTCG----AGGCATCGTGGAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.3310100000000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGCT-AGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
................................................................TCGA--ATA---------------------TGAGAGGTGTCAGCT-AGAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.3310000001000
......................................TCACGTCTTCTTCGAGTGCCATCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510100000000
droPer2
GCCCCGAG-TGTGGCACAGGCATTAAGAAGAACGCTCGTCACGTCCTCTTCGACTATCACAGGTTTGA--CCA---------------------TGAGCGTCAGATACT-GGAGGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTGCAAGAATTAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................CACAGGTTTGA--CCA---------------------TGAGCGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2441.255041000
........................................................TCACAGGTTTGA--CCA---------------------TGAGCGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................................TCACAGGTTTGA--CCA---------------------TGAGCGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
........................................................TCACAGGTTTGA--CCA---------------------TGAGCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................CACAGGTTTGA--CCA---------------------TGAGCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.753030000
.........................................................CACAGGTTTGA--CCA---------------------TGAGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.502020000
............................................................................................................T-GGAGGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................2350.402020000
...........................................................CAGGTTTGA--CCA---------------------TGAGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251010000
.........................................................CACAGGTTTGA--CCA---------------------TGAGCGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251010000
.........................................................CACAGGTTTGA--CCA---------------------TGAGCGTCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251010000
...........................................................CAGGTTTGA--CCA---------------------TGAGCGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251010000
...............................................................................................................GAGGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................2650.201100000
.................................................................................................................GGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------GGG................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201010000
...........................................................................................................CT-GGAGGCAGCAG------------------------------------------------------------------------CAGGGTCTA-------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201010000
........................................................................................................................G------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA.................19160.132200000
......................................................................................................................CAG------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA.................21100.101010000
......................................................................................................................CAG------------------------------------------------------------------------CAGGGTCTA-------------------GGGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................18110.091010000
droAna3
TTTATTTT-TATTCAATAATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----TGTG----------TTTAATATATTA----------TTAA--------------------AG----------TTTTTCAAAAGTAT-----------------------------------------TTTAAATAGATCA---------------------------------------------------------------------------------------ATTCAACAATTTT--T-GATCATGGGATACGAAATTCTATTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTAACAAA-GA-------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------TTACAAA--------------------------------GTTTAAATTGTT--------------------------------------TTGATTTAATC---------------------------------------------AT-------------------------ATAACTATAATATA-----------------------------------------TG--TTATTTTAACATATT----------------------------------ATATGTAATTATTACA--------------------------------------------ACAAAA-------------------------CTAA---TAGATATCTATGATAGAAATAATTTTASizeHit CountTotal NormTotal
No Reads
droKik1
GTCCGGAT-TGCGGATCCGGTATAACTGAGGATGCGAGACATATCTTCTTCGAGTGTCGCGGATTCGA--CGA---------------------GGAAAGGGACGGGCC-------CGTGC-------------------------------------------------------------------------------------------------------CCCG----T-CA--------ATACT-----------------------------------CCGTCAATTCACATTTGTTAGTTATGTAGATTTGTTAGTTGTCAATTAA----------------------------------------------------------------------ACGAATATATTAAGTATTAACTTATTTAAC----------TCTTTGAAGAATTCATTTACGCCCTTTTTTCTGTTGTC----------------------------------T------------------------------------------------------------------------------------TATGCCCTTT--TTTCTGTTAAATAATTATGGTTGTATTTSizeHit CountTotal NormTotal
No Reads
droFic1
TCGTCATT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC--------------------------------------GT---------------------------------------------CATTTCATTAATA-------ACATTT----------------------TC-AA-------TAAAAT---------------------------------ATAAATATTTG--A------------------------TAAGTTCGC-----------TTT---------------------------------------------------------------------TCTAAATTTTAAGTTCAGAAACAAAATTTAAATAACTTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCCCACAG-TGCGAAATTGTGGATGACAA-------GTCAGCGTCTCATTTGAGTGCCGAGAGTACCC--ACA---------------------GACTTGAAAACATGC-GA-------------------------------------------------GGCGAAATCTGCATTCGCAGTGAGCGAAGCGGCAGACTTGG-------------------TGGCCAG--------------------------------TACTTCCGCTAGCCAAT-------------------------------------------------TCCTTGCCC-------TGTTATAT--------GGGTATATATGTTCTTTAG------------ATTTA-----------------GTACATAATA-AA-------TA---AAAAACAAAC------------------------------TC---TGAAAATTTAATACTATTTTGCATTAACAA---------------------------------------------------------------------------------------AGCGAAAACTTTG--TGAACGCAGTAGTTCGAGACGATTTTASizeHit CountTotal NormTotal
No Reads
droRho1
ATTATTAT-TTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TT----------------GT---------------------------------------------------------------------------ATTTTCGTATTATTTTATTGTATT----------------------------------A------------------------------------------------------------------------------------TTTATTATTT--ATTTTA---TTATTTAATAATAGTTTTASizeHit CountTotal NormTotal
No Reads
droBia1
GCCCACTC-TGCGAGTCGGATA---ATGAAGACGCAGAGAACGTATTTTTTGTCTGTCCGAGATTTGG--AAA---------------------TGAACGTCGAGATCT-GAGCATAAGGG------------------------------------------------------------------------------------------------------------------TTGGGAG--------------------------------GATTTATTTATT--------------------------------------TT---------------------------------------TCTCTTA------TGAATG----GCTTTA-----------------CTACAAAATG-----------------------------------------TA--TTCTATAAACATTTT--T------------------------TTAATCTAT-----------CCTT-----------GTGAACTGTCTG-AGT-----------------------------------------TTTGTTTTTTG--T-GTTTAAAATTGTTATATTATTATTASizeHit CountTotal NormTotal
No Reads
droTak1
GCCTCCAA-TGTGGAGTGGA------GAAGACCGGCCAGCACGTGACCTTCACCTGCTCACGGTTTTA--GCG---------------------TGAAAGGGAAGAATT-CCTAGGCGAGA------------------------------------------------------------CAAGGGACCCTGTTGCCCTGG---------------------------------GAGACCG------------------CATGTACGGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTCAAACATTTTTTATSizeHit CountTotal NormTotal
No Reads
droEug1
GCCCGTCG-TGCGGCAGTGGAGTCACAGAGGACCCTCTCCACGTCCTCTTTGAATGTAGGAGATTTGT--GGA---------------------GGATCGCCTAACCAT-GGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCCTGGSizeHit CountTotal NormTotal
No Reads
dm3
GCCCATGG-TACGGAAGTGGACGTAGCGAAACAGCTGAGCACCA---------------GGAGGGTTCACGAGTGAGCAAATCCTGATCGTCCTCGCGAAAAAATGCTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGCGGGGA--------GTCCTG----------------------------------------------------------------------------GATTTGCCCACCTTAATGTTATATTGTTATTTAA--AT----------------AGTTAATCTTAATGGTTCAATAAACGAATAAAT------------------------------AAAAAAAAACACAC-----------------------------------------AGTAGTTTGATAT---------------------------------------------------------------------------------------GTCAGAAATTTT--TTGTTTTTGAATAA--TTTACCATTTTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................CCATAC-----------------------------------------------------------------------------------------------------------CGCGGGGA--------GTCCTG----------------------------------------------------------------------------GAT.......................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................TCCTGATCGTCCTCGCGAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCCTGATCGTCCTCGCGAAAAAATGCTT-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-----------------------------------------AGTAGTTTGATAT---------------------------------------------------------------------------------------GTCAGAAATT................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGAGCAAATCCTGATCGTCCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGAGCAAATCCTGATCGTCCTCGCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AAATCCTGATCGTCCTCGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.6470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000110000000000000001011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGCAAATCCTGATCGTCCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.6060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000200000000000000000000002000000010000000000000000000000000
......................................................................GAGTGAGCAAATCCTGATCGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TAATCTTAATGGTTCAATAAACGAAT.......................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AATCCTGATCGTCCTCGCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.4550000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
.......................................................................................................ATGCTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGCG........................................................................................................................................................................................................................................................................................................................................................................................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................TGCTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................2180.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GCAAATCCTGATCGTCCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CACGAGTGAGCAAATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGCGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGAGCAAATCCTGATCGTCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CGAGTGAGCAAATCCTGATCGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGAGCAAATCCTGATCGTCCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGAGCAAATCCTGATCGTCCTCGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GTGAGCAAATCCTGATCGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GAGTGAGCAAATCCTGATCGTCCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGTGAGCAAATCCTGATCGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGTGAGCAAATCCTGATCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................CA---------------GGAGGGTTCACGAGTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................GCAAATCCTGATCGTCCTCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................CAAATCCTGATCGTCCTCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AAATCCTGATCGTCCTCGCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
......................................................................................................AATGCTT-CACGGCCATAC-----------------------------------------------------------------------------------------------------------CGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AGCAAATCCTGATCGTCCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................AAATCCTGATCGTCCTCGCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ATCCTGATCGTCCTCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GCAAATCCTGATCGTCCTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CAAATCCTGATCGTCCTCGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
droSim2
CCCCATGG-TGCGGAAGTGGACGGAGTAAAACCCCAGAGCACAATCTCTTCTCGTGCGAAAAATATGC--AAG---------------------CGAAAGGAGATCCCT-GTAAACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................TGCGAAAAATATGC--AAG---------------------CGAAAGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2722.50500020010101000000
.......................................................................................................ATCCCT-GTAAACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...2511.00100000010000000000
.........TGCGGAAGTGGACGGAGTAAAACCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.................................................................TGC--AAG---------------------CGAAAGGAGATCCCT-GTAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
CCCCATGG-TGCGGAAGTGGACGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................CCAGAGCACAATCTCTTCTCGTGCGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
...CATGG-TGCGGAAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16170.8815000000000015000000
................................................TTCTCGTGCGAAAAATATGC--AAG---------------------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.67200000000200000000
..CCATGG-TGCGGAAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17170.6511000000000011000000
.................................................TCTCGTGCGAAAAATATGC--AAG---------------------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
..............................................TCTTCTCGTGCGAAAAATATGC--AAG---------------------CG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000100000000
..............................................TCTTCTCGTGCGAAAAATATGC--AAG---------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100010000000000000
.....................................................GTGCGAAAAATATGC--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.14100000000001000000
.................................................................................................................AACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA19180.11200000001010000000
.............................................CTCTTCTCGTGCGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.11100000000001000000
.................................................................................................................AACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT..17200.10200000000002000000
.CCCATGG-TGCGGAAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.07100000000001000000
.CCCATGG-TGCGGAAGTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.07100000000001000000
.....TGG-TGCGGAAGTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000001000000
.................................................................................................................AACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA..17190.05100000000001000000
.................................................................................................................AACCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....15190.05100000000010000000
...CATGG-TGCGGAAGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16190.05100000000001000000
.......G-TGCGGAAGTGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000010000000
...................................................................................................................CCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA..15200.05100000010000000000
droSec2
TCTTATTA-TTATATATTAATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATATATT------------ATATT--A---------------TATATTAT-----------TAATATATATATATA------------------------------TA---TGTAATTTAATTATTA-------------------------------------------------------------------------------------------------------TATTATATATA--T-ATATATATATATATATATATATATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTCCATGG-TGCAGAAGAGGATGGTGG----GAAACCTCAAAGTTCTCTTTTCATGCGGGAAGTTCGC--TAG---------------------CGAGAGGAGATTCCT-GGAAGCCGTAC------------------------------------------------------------------------------------------------------------------TTGGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTCCCTGGAAGCGGAAGCGGACAGTGCGAGACCCAAGAGCACGTGCTCTTCTCGTGCGGAAAGTTCGT--TTG---------------------CGAGAGGAAGTCCCT-AGAAGCCGTGC------------------------------------------------------------------------------------------------------------------TTAGCGGCGGCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAGTAATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:16 PM