ID:

dmo_86

 Coordinate:

scaffold_6482:1600650-1600719 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.4

Flybase annnotation

intron [Dmoj\GI14446-in]; utr3 [utr3_minus_11322]; CDS [Dmoj\GI14446-cds]; CDS [Dmoj\GI14446-cds]

No Repeatable elements found

Sense Strand Reads

GTCAAAAGCGATTCCCCTAGCTCCAAATACCGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATCTCTGGCTACTTGGCCGTATATTGATAAGCTCAACTAACTGTTTGCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTG

**************************************************(((((((((..((((.((..(((..(((((....)))))......))).)).))))...))))))))).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V110

male body		 V056

head

 V049

head

 V041

embryo
.................................................................................................TAAGCTCAACTAACTGTTTGCA................................................... 22 0 1 574.00 574 547 4 4 9 6 4
.................................................................................................TAAGCTCAACTAACTGTTTGCAGT................................................. 24 1 1 280.00 280 131 119 13 9 4 4
.................................................................................................TAAGCTCAACTAACTGTTTGCAG.................................................. 23 0 1 255.00 255 220 14 5 7 3 6
.................................................................................................TAAGCTCAACTAACTGTTTGC.................................................... 21 0 1 231.00 231 198 7 3 12 11 0
..................................................................................................AAGCTCAACTAACTGTTTGCA................................................... 21 0 1 48.00 48 48 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTG..................................................... 20 0 1 46.00 46 30 0 3 4 8 1
.................................................................................................TAAGCTCAACTAACTGTTTGCAGC................................................. 24 0 1 41.00 41 1 39 0 1 0 0
..................................................GTAAGCAGTGTTTGAACTAAATC................................................................................................. 23 0 1 30.00 30 5 11 14 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGCAG.................................................. 22 0 1 20.00 20 20 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAC.................................................. 23 1 1 12.00 12 9 3 0 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGCAGT................................................. 23 1 1 12.00 12 11 1 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCACT................................................. 24 2 1 11.00 11 5 6 0 0 0 0
.......................................................................................CGTATATTGATAAGCTCAACTAACTGTT....................................................... 28 0 1 10.00 10 10 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAA.................................................................................................... 20 0 1 10.00 10 1 0 9 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGC.................................................... 20 0 1 10.00 10 10 0 0 0 0 0
.................................................................................................TGAGCTCAACTAACTGTTTGCAGT................................................. 24 2 1 8.00 8 0 8 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAA................................................................................................... 21 0 1 6.00 6 2 0 4 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAATCTCT.............................................................................................. 26 0 1 6.00 6 3 0 3 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAAT.................................................................................................. 22 0 1 6.00 6 2 0 4 0 0 0
.........................................................................................TATATTGATAAGCTCAACTAACTGTT....................................................... 26 0 1 5.00 5 4 0 1 0 0 0
...................................................................................................AGCTCAACTAACTGTTTGCA................................................... 20 0 1 5.00 5 5 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAATCTCTGG............................................................................................ 28 0 1 5.00 5 3 0 2 0 0 0
...................................................................TAAATCTCTGGCTACTTGGC................................................................................... 20 0 1 5.00 5 5 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTT...................................................... 19 0 1 5.00 5 5 0 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTTGCAG.................................................. 24 0 1 4.00 4 4 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAA.................................................. 23 1 1 4.00 4 3 1 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAT.................................................. 23 1 1 4.00 4 3 0 1 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTG..................................................... 19 0 1 4.00 4 4 0 0 0 0 0
.................................................................................................TAAGCTCAACTGACTGTTTGCA................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..................................................................CTAAATCTCTGGCTACTTGGC................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0
.................................................................................................TAAGCTCAATTAACTGTTTGC.................................................... 21 1 1 3.00 3 1 0 0 0 2 0
......................................................................................................TCAACTAACTGTTTGCAGT................................................. 19 1 1 3.00 3 1 1 0 1 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAGTT................................................ 25 2 1 3.00 3 2 1 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTTGCA................................................... 23 0 1 3.00 3 3 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTA..................................................................................................... 19 0 1 3.00 3 1 0 1 0 0 1
................................................................................................CTAAGCTCAACTAACTGTTTGCAGT................................................. 25 2 1 3.00 3 1 2 0 0 0 0
..............................................................................................TGATAAGCTCAACTAACTGTTTGC.................................................... 24 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................AAAGCTCAACTAACTGTTTGCAGT................................................. 24 2 1 3.00 3 0 3 0 0 0 0
.......................................................................................CGTATATTGATAAGCTCAACTAACT.......................................................... 25 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................TAAGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 3.00 3 1 2 0 0 0 0
....................................................................AAATCTCTGGCTACTTGGC................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTTGC.................................................... 22 0 1 3.00 3 2 0 0 1 0 0
.................................................................................................TAAGCTCAACTAACTGTT....................................................... 18 0 1 2.00 2 2 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAATCT................................................................................................ 24 0 1 2.00 2 0 0 2 0 0 0
.................................................................................................TAAGCTCAACTAACTGATTGCAG.................................................. 23 1 1 2.00 2 1 1 0 0 0 0
........................................................AGTGTTTGAACTAAATCTCTGGCTACT....................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
................................................................................................CTAAGCTCAACTAACTGTTTGCA................................................... 23 1 1 2.00 2 1 0 0 0 0 1
........................................................AGTGTTTGAACTAAATCTCTGGC........................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TTAAGCTCAACTAACTGTTTGCAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................GAACTAAATCTCTGGCTACTTGG.................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAATCTCTG............................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
.................................................................ACTAAATCTCTGGCTACTTGG.................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................TAACCTCAACTAACTGTTTGCAGT................................................. 24 2 1 2.00 2 0 2 0 0 0 0
.................................................................................................TAAGCTCAACTACCTGTTTG..................................................... 20 1 1 2.00 2 0 0 0 1 1 0
.................................................................................................TAAGCTCAACTAACTGTTTGA.................................................... 21 1 1 2.00 2 1 0 0 1 0 0
.................................................................................................TAAGCTCAGCTAACTGTTTGCA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................GATAAGCTCAACTAACTGTTTGC.................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................CGTATATTGATAAGCTCAACT.............................................................. 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................AGCTCAACTAACTGTTTGC.................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................TAAGCTCAACTCACTGTTTGCAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGCAGC................................................. 23 0 1 2.00 2 0 2 0 0 0 0
................................................................AACTAAATCTCTGGCTACTTGGC................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTT...................................................... 20 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................CACCTATTTGGCGCAGAGTGCTC....................... 23 0 1 2.00 2 0 0 2 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCATT................................................. 24 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGT.................................................... 21 1 1 2.00 2 1 0 0 0 1 0
....................................................................AAATCTCTGGCTACTTGG.................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...........................................ATGAAATGTAAGCAAATTTTGAA........................................................................................................ 23 3 7 1.71 12 10 0 2 0 0 0
..........................................CATGAAATGTAAGCAGTGTTTGAA........................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
..................................................GTAAGAAGTGTTTGAACTAA.................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................ATATTGATAAGCTCAACTAACTGTTT...................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGCAC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................ATGTTGGACGGCATGAAGC.. 19 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTAAATCTC............................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
....................................................AAGCAGTGTTTGAACTAAATCTCTGG............................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAGA................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CTAAGCTCAACTAACTGTTTGCAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCGCAACCAACTGTTTGCA................................................... 22 2 1 1.00 1 0 0 0 0 0 1
........................................................AGTTTTTGAACTAAATCTCTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACT...................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTAGTGTTTGAACTAAATC................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................CTCAAATGTTGGACGGCATGAAGCT. 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................TCTGGCTACTTGGCCGTAT.............................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TGAGCTCAACTAACTGTTTGC.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAACTCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................CGTATATTGATAAGCTCAA................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................TACTAAGCTCAACTAACTGTTTGCA................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.....................................................................AGTCTCTGGCTACTTGGCCGTATATTG.......................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAATCTCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCAACCATCTGTTTGCA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTGATAAGCTCAACTAACTGTTT...................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCGCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATCTCGGTAAGCTCAACTAACTGTTTGCA................................................... 29 3 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGCAGAGTTTGAACTAAATCTCT.............................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................TAAGCTCGACTGACTGTTTGCAG.................................................. 23 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................CGTATATTGATAAGCTCAACTAACTGTTT...................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TGAGCTCAACTAGCTGTTTGCAGT................................................. 24 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCAACTAGCTGTTTGCAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TGAGCTCAACTAACTGTTTGCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGATCAACTAACTGTTTGCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATATTGATAAGCTCAACTAACTGTTTGC.................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTTCAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTTTTTGCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATATTGATAAGCTCAACTAACTGTTTGC.................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTTACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TATTGATAAGCTCAACTAACTGTTT...................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTTGCAGTT................................................ 26 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAATTAACTGTTTGCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CTTAAGCTCAACTAACTGTTTGCAG.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
................................................................................................GTAAGCTCAACTAACTGTTTGC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CTAAGCTCAACTAACTGTTTGCAGC................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCAACTGACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................TCTGGCTACTTGGCCGTATATTGA......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................GTAAGCAGTGTGTGAACTAAATCT................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................TGTTTGAACTAAATCTCTGGC........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................CCGTATATTGATAAGCTCAACTAACTGTT....................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAATCTCAACTAACTGTTTGCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...................................................TAAGCAGTGTTTGAACTAAATCTCT.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAGTC................................................ 25 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................TAAGCTCAATTCACTGTTTGCAG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGCAGTGTCTGAACTAAATCTCTGG............................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
.................................................CGTAAGCAGTGTTTGAACTAAATCTCTG............................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................CGTATATTGATAAGCTCAACTAACTG......................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTTCA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
........................................................................................................................................GCAGAGTGCTCAAATGTTGGAC............ 22 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................TAACCTCAACTAACTGTTTG..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................TGAGCTCAATTAACTGTTTGC.................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................TTTGAACTAAATCTCTGGCTACT....................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................TTAAGCAGTGTTTGAACTAAATC................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................TCAACTAACTGTTTGCAGC................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCCACTAACTGTTTGCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCACCTAACTGTTTGCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CAAGCTCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
................................................................................................TTAAGCTCAACTAACTGTTTGCAGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0
...............................................................GAACTAAATCTCTGGCTACT....................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTCGCAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAAAA................................................ 25 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTTTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................AGCTCAACTAACTGTTTGCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...................GCTCCAAATACCGACAATGAGTCC............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TTAGCTCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..........................ATACCGACAATGAGTCCATGAAATC....................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCACC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCAAA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTAAATCTCTGGC........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTGATAAGCTCAACTAACTGT........................................................ 21 0 1 1.00 1 0 0 1 0 0 0
....................................................................AAATCTCTGGCTACTTGGCCGT................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................ACTAAATCTCTGGCTACTTGGC................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................GAAGCTCAACTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................AAGCTCAACTAACTGTTTGCAGTT................................................ 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................CACCTATTTGGCGCAGAGTGCTCA...................... 24 0 1 1.00 1 0 0 0 1 0 0
..................................................................CTAAATCTCTGGCTACTTGG.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................TATTGATAAGCTCAACTAACTGTTTGC.................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................TGATAAGCTCAACTAACTGT........................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................CAAGCTCAATTAACTGTTTGCAG.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................................TTAAGCTCAACTAACTGTTTGCA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAATTGTTTGCAC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTAAACTAACTGTGTGGAG.................................................. 23 3 1 1.00 1 0 0 0 1 0 0
..................................................................CTAAATCTCTGGCTACTTGGCC.................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAATTAACTGTTTGCA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
.................................................................................................TAAGCTCAACTAACTGTTTACAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
................................................................................................ATAAGCTCAACAAACTGTTTGC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GTTAAGCTCAACTAACTGTTTGCAG.................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATATTGATAAGCTCAACTAACTGT........................................................ 25 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................ACGTAAGCTCAACTAACTGTTTGCAG.................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..........................................................TGTTTGAACTAAATCTCTGACTACTTGGC................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................CGTATATTGATTAGCTCAACTAACTGTT....................................................... 28 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTAAATC................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTACCAGTTTGCAGC................................................. 24 2 1 1.00 1 0 1 0 0 0 0
...............................................................GAACTAAATCTCTGGCTACTTGGC................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGTTTGCC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................AAGCTCAACTAGCTGTTTGCAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ATAAGCTCAACTAACTGTTTGCAGT................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTCAACTAACTGTTTGCA................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAATCTCAACTAACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GCAGAGTGCTCAAATGTTGGACGGCAT....... 27 0 1 1.00 1 0 0 1 0 0 0
....................................................AAGCAGTGTTTGAACTAAATCTCT.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................GTTTGAACTAAATCTCTGGCTACTTGGC................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTCACTGTTTGCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TAAGCTCAACTAACTGCTTCC.................................................... 21 2 2 0.50 1 0 0 0 0 1 0
.................................................................................................TAAGCTCAACTAACCGTGCGC.................................................... 21 3 3 0.33 1 0 0 0 0 1 0

Anti-sense strand reads

CAGTTTTCGCTAAGGGGATCGAGGTTTATGGCTGTTACTCAGGTACTTTACATTCGTCACAAACTTGATTTAGAGACCGATGAACCGGCATATAACTATTCGAGTTGATTGACAAACGTCGCCTGTGGATAAACCGCGTCTCACGAGTTTACAACCTGCCGTACTTCGAC

***************************************************(((((((((..((((.((..(((..(((((....)))))......))).)).))))...))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V110

male body		 V041

embryo
...........................................TACTTTACATTCGTTTAAAACTT........................................................................................................ 23 3 7 0.71 5 5 0 0
.ACTTTACGCTAAGGGGATGG..................................................................................................................................................... 20 3 5 0.20 1 0 1 0
...TTTTCGCTAAGAGGCTGGA.................................................................................................................................................... 19 3 9 0.11 1 0 0 1
.............................................................................................................................TGGACAAACGGCGGCTCAC.......................... 19 3 17 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6482:1600600-1600771 + dmo_86 confident -GTCA--A--------------AAGCGATTCCCCTAGCT--CCAAATA---CC---------------GACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGCC---GTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTGAC
droVir3 scaffold_12970:7925688-7925861 - dvi-mir-1007 Known_mirbase -GT---------TAAAAGGAGGTGCTG---TAACT------AATAATG---TT---------------GACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGACC--ATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTGGT
droGri2 scaffold_15203:11134526-11134702 + dgr_50 confident -G-AACAG--GCTAAAGGGCAGCACTGGCT------------ATGAAG---AT---------------GACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTTTC
droWil2 scf2_1100000004515:162858-163018 - -A----------TGAATGGCGGCACCGGC---TAT------GCCGATG---AG---------------GACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG-------------TTTAATT------TCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTATT
dp5 XL_group1a:9060555-9060742 + dps_2595 -A-------TTATGAACGGCGGCACTGGCTA---T------AGCAAGG---AGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGA-ATCGAAT----CGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTCCT
droPer2 scaffold_15:1454011-1454197 + -A-------TAATGAACGGCGGCACTGGCTA---T------GGCAAGG---AGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGA-ATCGAAT----CGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTCCT
droAna3 scaffold_13334:1054341-1054506 + dan_140 confident -----------------GGCGGCACCGGCTACCGTGGTCCCGGGGACG---AC---------------GACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGAAT-----A-GCT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTGCT
droBip1 scf7180000396733:702486-702664 + -G-GA--GATAATGAACGGCGGCACTGGATACCGGGGACCTGGCGACG---AG---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGAAT-----A-GCT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTGCT
droKik1 scf7180000302395:538325-538504 - -----------ATGAACGGCGGCACCGGTTATCATCCATCGGGCGAGGACAAT---------------GACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--T-CGTATT-AATTGGTCT------TCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTGCT
droFic1 scf7180000454077:618913-619088 - -GTGA--GATTATGAACGGCGGCAGCGGCTTCCGT------GGCGAGG---AT---------------GACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--T-TGGATC---TTGGAC-------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTGCT
droEle1 scf7180000490214:749234-749410 + -GCGA--GATTATGAACGGAGGCAGTGGTTTCCGT------AACGAGG---AC---------------GACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTGGACT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTGCT
droRho1 scf7180000780082:45613-45789 + -GCGA--GATTATGAACGGTGGCAGCGGATTCCGT------GGCGAAG---AT---------------GACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTAGATT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTGCT
droBia1 scf7180000302187:364088-364257 + -GTGA--GATCATGAACGGCGGCAGCGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--T-----------TGGACT------CCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTGCT
droTak1 scf7180000415158:280489-280665 + -GCGA--GATTATGAACGGCGGCAGCGGCTTCCGC------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--C-CGGATC---CTGAACT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTGCT
droEug1 scf7180000408193:314879-315055 + -ATGA--GATTATGAATGGAGGCAGTGGATTCCGC------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTGGACT------CCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTGCT
dm3 chrX:21167360-21167537 - dme-mir-1007 Known_mirbase CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTGCT
droSim2 x:19899713-19899890 - dsi_283 candidate-rescued CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCT
droSec2 scaffold_8:3474367-3474544 - dse_273 confident CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCT
droYak3 X:20343084-20343260 - dya_95 confident -ATGA--GATTATGAACGGAGGCAGCGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-AGGATC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCT
droEre2 scaffold_4690:17696717-17696883 - der_61 confident -------------GAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-GGGATC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
-GTCA--A--------------AAGCGATTCCCCTAGCT--CCAAATA---CC---------------GACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGCC---GTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTGACSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCA.....................................................221574.0057454746944
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAGT...................................................241280.0028013144911913
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAG....................................................231255.00255220637145
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GC......................................................211231.002311980111273
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCA.....................................................21148.00484800000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----G.......................................................20146.00463018403
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAGC...................................................24141.00411001390
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--............................................................................................................23130.003050001114
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCAG....................................................22120.00202000000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAC....................................................23112.0012900030
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCAGT...................................................23112.00121100010
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCACT...................................................24111.0011500060
................................................................................................................................C---GTATATTGATAAGCTCAACTAACTGTT.............................................................28110.00101000000
.......................................................................................GTAAGCAGTGTTTGAACTAA.................................................................................................................20110.0010100009
..............................................................................................................................................AAGCTCAACTAACTGTTT----GC......................................................20110.00101000000
.......................................................................................GTAAGCAGTGTTTGAACTAAA................................................................................................................2116.006200004
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--TCT.........................................................................................................2616.006300003
.......................................................................................GTAAGCAGTGTTTGAACTAAAT...............................................................................................................2216.006200004
.....................................................................................................................................TATATTGATAAGCTCAACTAACTGTT.............................................................2615.005400001
...............................................................................................................................................AGCTCAACTAACTGTTT----GCA.....................................................2015.005500000
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--TCTGG.......................................................................................................2815.005300002
........................................................................................................TAAATC--TCTGGCTA--CTTGGC............................................................................................2015.005500000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----........................................................1915.005500000
............................................................................................................................................ATAAGCTCAACTAACTGTTT----GCAG....................................................2414.004400000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAA....................................................2314.004300010
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAT....................................................2314.004300001
..............................................................................................................................................AAGCTCAACTAACTGTTT----G.......................................................1914.004400000
.......................................................................................................CTAAATC--TCTGGCTA--CTTGGC............................................................................................2114.004400000
..................................................................................................................................................TCAACTAACTGTTT----GCAGT...................................................1913.003100110
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTT..................................................2513.003200010
............................................................................................................................................ATAAGCTCAACTAACTGTTT----GCA.....................................................2313.003300000
.......................................................................................GTAAGCAGTGTTTGAACTA..................................................................................................................1913.003110001
..........................................................................................................................................TGATAAGCTCAACTAACTGTTT----GC......................................................2413.003300000
................................................................................................................................C---GTATATTGATAAGCTCAACTAACT................................................................2513.003300000
.........................................................................................................AAATC--TCTGGCTA--CTTGGC............................................................................................1913.003300000
............................................................................................................................................ATAAGCTCAACTAACTGTTT----GC......................................................2213.003200100
.............................................................................................................................................TAAGCTCAACTAACTGTT.............................................................1812.002200000
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--T...........................................................................................................2412.002000002
.............................................................................................AGTGTTTGAACTAAATC--TCTGGCTA--CT................................................................................................2712.002200000
.............................................................................................AGTGTTTGAACTAAATC--TCTGGC......................................................................................................2312.002200000
....................................................................................................GAACTAAATC--TCTGGCTA--CTTGG.............................................................................................2312.002200000
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--TCTG........................................................................................................2712.002200000
......................................................................................................ACTAAATC--TCTGGCTA--CTTGG.............................................................................................2112.002200000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GA......................................................2112.002100100
...........................................................................................................................................GATAAGCTCAACTAACTGTTT----GC......................................................2312.002200000
................................................................................................................................C---GTATATTGATAAGCTCAACT....................................................................2112.002200000
...............................................................................................................................................AGCTCAACTAACTGTTT----GC......................................................1912.002200000
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCAGC...................................................2312.002000020
.....................................................................................................AACTAAATC--TCTGGCTA--CTTGGC............................................................................................2312.002200000
............................................................................................................................................ATAAGCTCAACTAACTGTTT----........................................................2012.002200000
............................................................................................................................................................................CACCTATTTGGCGCAGAGTGCTC.........................2312.002000002
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCATT...................................................2412.002200000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GT......................................................2112.002101000
.........................................................................................................AAATC--TCTGGCTA--CTTGG.............................................................................................1812.002200000
...............................................................................CATGAAATGTAAGCAGTGTTTGAA.....................................................................................................................2411.001000001
......................................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----........................................................2611.001100000
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCAC....................................................2211.001100000
.....................................................................................................................................................................................................ATGTTGGACGGCATGAAGC....1911.001100000
.......................................................................................GTAAGCAGTGTTTGAACTAAATC--TC..........................................................................................................2511.001000001
.........................................................................................AAGCAGTGTTTGAACTAAATC--TCTGG.......................................................................................................2611.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAGA...................................................2411.001100000
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................1811.001100000
................................................................................................................................................................................................CTCAAATGTTGGACGGCATGAAGCT...2511.001100000
................................................................................................................TCTGGCTA--CTTGGCC---GTAT....................................................................................1911.001100000
................................................................................................................................C---GTATATTGATAAGCTCAA......................................................................1911.001100000
.........................................................................................................................................TTGATAAGCTCAACTAACTGTTT----........................................................2311.001100000
................................................................................................................................C---GTATATTGATAAGCTCAACTAACTGTTT----........................................................2911.001100000
......................................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----GC......................................................2811.001100000
.....................................................................................................................................TATATTGATAAGCTCAACTAACTGTTT----GC......................................................2911.001100000
.......................................................................................................................................TATTGATAAGCTCAACTAACTGTTT----........................................................2511.001100000
............................................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGTT..................................................2611.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCT.....................................................2211.001100000
.........................................................................................................................................................................................................TGGACGGCATGAAGCTGA.1811.001100000
................................................................................................................TCTGGCTA--CTTGGCC---GTATATTGA...............................................................................2411.001000010
...............................................................................................TGTTTGAACTAAATC--TCTGGC......................................................................................................2111.001100000
...............................................................................................................................CC---GTATATTGATAAGCTCAACTAACTGTT.............................................................2911.001100000
........................................................................................TAAGCAGTGTTTGAACTAAATC--TCT.........................................................................................................2511.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTC..................................................2511.001000001
................................................................................................................................C---GTATATTGATAAGCTCAACTAACTG...............................................................2611.001100000
........................................................................................................................................................................................GCAGAGTGCTCAAATGTTGGAC..............2211.001000001
.................................................................................................TTTGAACTAAATC--TCTGGCTA--CT................................................................................................2311.001100000
..................................................................................................................................................TCAACTAACTGTTT----GCAGC...................................................1911.001000010
....................................................................................................GAACTAAATC--TCTGGCTA--CT................................................................................................2011.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAAAA..................................................2511.001100000
...............................................................................................................................................AGCTCAACTAACTGTTT----GCAGT...................................................2211.001000001
....................................GCT--CCAAATA---CC---------------GACAATGAGTCC............................................................................................................................................2411.001100000
.............................................ATA---CC---------------GACAATGAGTCCATGAAATC....................................................................................................................................2511.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCAAA...................................................2411.001100000
.........................................................................................AAGCAGTGTTTGAACTAAATC--TCTGGC......................................................................................................2711.001100000
.........................................................................................................................................TTGATAAGCTCAACTAACTGT..............................................................2111.001000001
.........................................................................................................AAATC--TCTGGCTA--CTTGGCC---GT......................................................................................2211.001100000
......................................................................................................ACTAAATC--TCTGGCTA--CTTGGC............................................................................................2211.001100000
..............................................................................................................................................AAGCTCAACTAACTGTTT----GCAGTT..................................................2411.001100000
............................................................................................................................................................................CACCTATTTGGCGCAGAGTGCTCA........................2411.001000100
.......................................................................................................CTAAATC--TCTGGCTA--CTTGG.............................................................................................2011.001100000
.......................................................................................................................................TATTGATAAGCTCAACTAACTGTTT----GC......................................................2711.001100000
..........................................................................................................................................TGATAAGCTCAACTAACTGT..............................................................2011.001100000
.......................................................................................................CTAAATC--TCTGGCTA--CTTGGCC---........................................................................................2211.001100000
.....................................................................................................................................TATATTGATAAGCTCAACTAACTGT..............................................................2511.001000001
........................................................................................TAAGCAGTGTTTGAACTAAATC--............................................................................................................2211.001100000
....................................................................................................GAACTAAATC--TCTGGCTA--CTTGGC............................................................................................2411.001100000
.............................................................................................................................................TAAGCTCAACTAACTGTTT----GCC.....................................................2211.001100000
............................................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGT...................................................2511.001100000
.................................................................................................................................................CTCAACTAACTGTTT----GCA.....................................................1811.001100000
........................................................................................................................................................................................GCAGAGTGCTCAAATGTTGGACGGCAT.........2711.001000001
.........................................................................................AAGCAGTGTTTGAACTAAATC--TCT.........................................................................................................2411.001100000
................................................................................................GTTTGAACTAAATC--TCTGGCTA--CTTGGC............................................................................................2811.001100000
droVir3
-GT---------TAAAAGGAGGTGCTG---TAACT------AATAATG---TT---------------GACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGACC--ATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTGGTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................GTAAGCAGTGCTTGAGCTTA.................................................................................................................2011669.001669311150153310312120501014106167617181885061551935116804913014100000000000000000000081946800000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGT...................................................2211193.00119321192123115303000226301536175720491013121724451723514801657306630000000000000000112710422041900030426300000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................221271.002710061003000000001085115319151012111491633000100050000000000000000000010301600000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................231191.00191002411032101000072122201514315732628110100118000100000000020000123700000002000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................231186.001860084500030000001223121010202073131711012000000000000000000010112000000021005000010
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAG....................................................211145.00145009320001000000120220032011012921001000001000000000000000000002000500000101000000
.......................................................................................GTAAGCAGTGCTTGAGCTT..................................................................................................................191117.001170134101620000000110600015000102837080000015000000000000000000003100000010000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTAT................................................................................................................21171.00710050020000100062023303500101973805000013000000000000000000001000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGA...................................................22166.0066001110100000000310010113221206102900000021000000000000000000005100000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................21157.00572870000000000022104202300001471101000000000000000000000000005000000002100000010
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTC..................................................23152.005200700100000000000010600000104106704000002000000000000000000002100000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................22148.0048001900000000000000110013000003101501100000000000000000000000101000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCA.....................................................20146.004600250000000000020002102000001052100000101000000000000000000003000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................24138.003800158000200000000000000100000121301000000000000000000000000200100000000010000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................20130.003000000000000000000000001000000332010000020000000000000000000018000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................21129.00290060000000000023122202200000010500000000000000000000000000001000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATT...............................................................................................................22126.00260030010000000014000000100010234100000001000000000000000000004000000000000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAGT...................................................21120.002000170000000000000000000000000030000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCT...................................................................................................................18120.002000120000002100000001000000000001001000002000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTT..................................................23118.00180090000000000010001000000010110100000000000000000000000000003000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTT.................................................................................................................20117.00170000010000000002001000200000021400000002000000000000000000001100000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTC..................................................24116.00160020000000000000000100000100440101000001000000000000000000000100000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC..................................................25114.00140000000000000000000010000000012900000001000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTAA................................................................................................................21114.00140010001010000000000001001010031100010001000000000000000000000100000000000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAG....................................................20111.001100110000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................23111.00110010001000000001000000001000113100000000000000000000000000000000010000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GC......................................................1919.0090090000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................2419.0090060000000000000000000000000010000000000000000000000000000000200000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................2019.0090050000000000000000001100000000100000000000000000000000000001000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGC...................................................2218.0080005000000000000010000200000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGA...................................................2317.0070000000000000000000000000100040100000001000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTAA.................................................2417.0070000000000000000000000000100000010031000000000000000000000000001000000000000000
........................................................................................TAAGCAGTGCTTGAGCTTA.................................................................................................................1916.0060040000002000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAT....................................................2316.0060010000000000000000000000000201100000001000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTA..................................................2315.0050010000000000000000000000001000110000000000000000000000000000001000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATTC--TCT.........................................................................................................2615.0050040000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................2315.0050000000000000000000000000000102000110000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATACTCAACTGTTGCGCGGCATGA.......2414.0040011000000000000000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTA..................................................2414.0040000020000000000000100000000010000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTC.................................................................................................................2014.0040000010000000000000010000000011000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTTC.................................................2414.0040010000000000000000000000000000100000000000000000000000000000020000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATC...............................................................................................................2214.0040000000000000000000000000000011100000001000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCC.................................................2614.0040010000000000000000000000010010001000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTCT.................................................2414.0040010000000000000000000000000110000000001000000000000000000000000000000000000000
.........................................................................................AAGCAGTGCTTGAGCTTA.................................................................................................................1814.0040000000100000000000000000000000000000001000000000000000000000200000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................1814.0040200000000000000000000000000000200000000000000000000000000000000000000000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCA.....................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTG.................................................................................................................2013.0030010000000000000000000100000000000000000000000000000000000001000000000000000000
.................................................................................................................................................CTCAATTAACTGTTT----GCAGT...................................................2013.0030020000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCATT...................................................2213.0030010000000000001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CTCAATTAACTGTTT----GCAG....................................................1913.0030010000000000000000000000000001000000000000000000000000000001000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAAA..................................................2513.0030010000000000000000000000100000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACTGTTGCGCGGCATGAAACT...2313.0030000000000000000000000000000000000000000000000000000000000000000000000003000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATA...............................................................................................................2213.0030000000000000000000000000000100100010000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCC.................................................2513.0030000000000000000000000000000021000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTT..................................................2413.0030010000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTAAA...............................................................................................................2213.0030000000000000000000000000010010000000010000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAA....................................................2113.0030000000000000000000000000000100100001000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGC...................................................2313.0030012000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA.................................................2613.0030010000000000000000000000010000000010000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTC..................................................................................................................1912.0020010000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................CAATTAACTGTTT----GCAGT...................................................1832.0060020000000000000000000010000100000000001000000000000000000000000000010000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAGTC..................................................2212.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCC.....................................................2212.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CTGATAAGCTCAATTAACTGTTT----GC......................................................2512.0020001000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................CGAACAATACTCAACTGTTGCGCGGC...........2612.0020000000000000000000000000000000000000000000000000000000000000000000001010000000
.....................................................................................................................................................................................CTCGAACAATACTCAACT.....................1812.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTCC.................................................2412.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................1912.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................................................................................................................................CGAACAATACTCAACTGTTGCGC..............2312.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................2512.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTCA.................................................2421.5030000000000000000000000000000200100000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCT.....................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................TAAGCAGTGCTTGAGCTT..................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTTGACC--ATTTTCTGATAAG...........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATTC--TC..........................................................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCT.................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTA..................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCATTC..................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAC....................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TC--TCTGGCTTCA-TTTGACC--ATTTT...................................................................................2411.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAA....................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................TC--TCTGGCTTCA-TTTGACC--AT......................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................GTGCTTGAGCTTATTC--TCT.........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----T.......................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................GACC--ATTTTCTGATAAGCTC........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................CTCAATTAACTGTTT----GCAGTT..................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCACA...................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATTC--............................................................................................................2311.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................TGGCTTCA-TTTGACC--ATTTTCTGATA.............................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGAAA.................................................2511.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT...................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCATTA..................................................2311.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GTTGCGCGGCATGAAACTGGT2111.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
.................................CT------AATAATG---TT---------------GACAACGAATC.............................................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TTCTGATAAGCTCAATTAACTGTTT----GC......................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................C--TCTGGCTTCA-TTTGACC--AT......................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ACTCAACTGTTGCGCGGCATGAAACT...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................CTGGCTTCA-TTTGACC--ATTTTCTGATA.............................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGTGCTTGAGCTTATTC--TCT.........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.GT---------TAAAAGGAGGTGCTG---TAACT------...................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................C--ATTTTCTGATAAGCTCAATT....................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TCAATTAACTGTTT----GCAGT...................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTGACC--ATTTTCTGATAAG...........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----C.......................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAGA...................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTATTC--TCTGGC......................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................C--ATTTTCTGATAAGCTCAATTAACT................................................................2511.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................AGCAGTGCTTGAGCTTATT...............................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................TGATAAGCTCAATTAACTGTTT----GCAGT...................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AATACTCAACTGTTGCGCGG............2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GTTGCGCGGCATGAAACTG..1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGAT..................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................GCAGTGCTTGAGCTTATTC--TCT.........................................................................................................2211.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TTCTGATAAGCTCAATTAACTGTT.............................................................2411.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................C--ATTTTCTGATAAGCTCAATTAAC.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................TCTGATAAGCTCAATTAACTGTTT----GCA.....................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TATTC--TCTGGCTTCA-TTTGAC...........................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CTTCA-TTTGACC--ATTTTCTGATAA............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................CTCTCGAACAATACTCAACT.....................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCT.................................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................GACC--ATTTTCTGATAAGCT.........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCACT...................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTTA.................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............TAAAAGGAGGTGCTG---TAAC..........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................CC--ATTTTCTGATAAGCTCAATT....................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATACTCAACTGTTGCGCGGCATG........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAT....................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCATT...................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TGCGCGGCATGAAACTGGT1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TGTAAGCAGTGCTTGAGCT...................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GGATGCCGCCCTCTCGAAC................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................ATTC--TCTGGCTTCA-TTTGACC--ATTTTC..................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA...................................................2411.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................AATACTCAACTGTTGCGCGGC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................TTCA-TTTGACC--ATTTTCTGATAAGC..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA.................................................2511.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACTGTTGCGCGGCATGAAACTGGT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................GCTCAATTAACTGTTT----GC......................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TAAGCAGTGCTTGAGCTTATT...............................................................................................................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTTT.................................................2420.5010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTAT.................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................AAGCAGTGCTTGAGC....................................................................................................................1520.5010000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAAT...................................................2220.5010000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGAAA.................................................2420.5010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGCTTGAGCTTTA................................................................................................................2120.5010000000000000000000000010000000000000000000000000000000000000000000000000000000
droGri2
-G-AACAG--GCTAAAGGGCAGCACTGGCT------------ATGAAG---AT---------------GACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTTTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCAG....................................................231122.001221220
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCA.....................................................22143.0043412
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GC......................................................21121.0021201
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCAGT...................................................24115.0015114
..............................................................................................................................................AAGCTCAATTCACTGTTT----GCAG....................................................2216.00660
..............................................................................................................................................AAGCTCAATTCACTGTTT----GCAGT...................................................2316.00651
..............................................................................................................................................AAGCTCAATTCACTGTTT----GCA.....................................................2114.00440
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCAC....................................................2313.00330
.............................................................................................................................................TAAGCTCAATTCACTGTTT----G.......................................................2013.00321
.......................................................................................GTAAGCAGTGTTTGAACTGAATA--TC..........................................................................................................2512.00220
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCAT....................................................2312.00220
..................................................................................................................................................TCAATTCACTGTTT----GCAG....................................................1811.00110
..........................................................................................................................................................................................ACAACCGTCGACCGCTGCAAG.............2111.00110
..................................................................................................................TGGTTA---TCCGACTTCATATACTGA...............................................................................2411.00110
............................................................................................................................................ATAAGCTCAATTCACTGTTT----GCAGT...................................................2511.00101
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCATG...................................................2411.00110
.............................................................................................................................................TAAGCTCAATTCACTGTTT----GCAGGCA.................................................2611.00110
.....................GCACTGGCT------------ATGAAG---AT---------------GACA....................................................................................................................................................2111.00101
................................................................................................................................................................................................GTCGACCGCTGCAAGGGATGAA......2211.00110
.............................................................................................................................................TAAGCTCAATTCACTGTTT----........................................................1911.00110
droWil2
-A----------TGAATGGCGGCACCGGC---TAT------GCCGATG---AG---------------GACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG-------------TTTAATT------TCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTATTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................GATGGCATCTTCTCGGAGAATCGTC.........................2518.00800440
.............................................................................................................................................................................................ATCGTCGTTTACTGCAGGGC...........2013.00301020
.............................................................................................................................................................................GGCATCTTCTCGGAGAATCGT..........................2112.00200200
.............................................................................................................................................................................................ATCGTCGTTTACTGCAGGGCATGC.......2412.00200110
...............................................................................................................................................................................................CGTCGTTTACTGCAGGGCA..........1911.00100010
........................................................................................................................................................................CTGATGGCATCTTCTCGGA.................................1911.00100010
...........................................................................................................................................................................................GAATCGTCGTTTACTGCAGGGC...........2211.00100010
.................................................................................................................................................................................TCTTCTCGGAGAATCGTCGTTTACTGC................2711.00110000
...................................................................................................................................................................................................GTTTACTGCAGGGCATGC.......1811.00100010
.........................................................................................................................................................................................GAGAATCGTCGTTTACTGCA...............2011.00110000
..........................................................................................................................................................................GATGGCATCTTCTCGGAGAAT.............................2111.00100001
.......................................................................................................................................................................................CGGAGAATCGTCGTTTACTGCAGGGC...........2611.00100010
..........................................................................................................................................................................GATGGCATCTTCTCGGAG................................1811.00100010
.............................................................................................................................................................................GGCATCTTCTCGGAGAATCGTC.........................2211.00100100
............................................................................................................................................................................................AATCGTCGTTTACTGCAGGGC...........2111.00100010
.........................................................................................................................................................................TGATGGCATCTTCTCGGAGAATC............................2311.00100010
...................................................................................................................................................................................TTCTCGGAGAATCGTCGTTTACTGC................2511.00110000
dp5
-A-------TTATGAACGGCGGCACTGGCTA---T------AGCAAGG---AGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGA-ATCGAAT----CGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTCCTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................................CATCTTCTCCGAGAATCGTCGCCTGC...................2612.0020200000000
...............ACGGCGGCACTGGCTA---T------AGCAAGG---AG.......................................................................................................................................................................2611.0010100000000
.......................ACTGGCTA---T------AGCAAGG---AGG......................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGC...................2311.0010100000000
..................................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGCTT.................2511.0010100000000
..........................................................................................................................................................................................AGAATCGTCGCCTGCTTCAA..............2011.0010100000000
....................GGCACTGGCTA---T------AGCAAGG---.........................................................................................................................................................................1911.0010100000000
..........................................................CAACCACCACGACAACGAATC.............................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGA...........2211.0010100000000
....................................................GGACAACAACCACCACGACAAC..................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................CTCCGAGAATCGTCGCCTG....................1911.0010100000000
........................CTGGCTA---T------AGCAAGG---AGGACAACAAC..............................................................................................................................................................2611.0010010000000
.....................................................................................................................................................................................CTCCGAGAATCGTCGCCTGC...................2011.0010100000000
.........................................AGCAAGG---AGGACAACAACCACC..........................................................................................................................................................2211.0010000010000
................................................................................................................................................................................ATCTTCTCCGAGAATCGTCGCCTG....................2411.0010100000000
............................................AAGG---AGGACAACAACCAC...........................................................................................................................................................1811.0010010000000
....................................................................GACAACGAATCGATACAGT.....................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGAATGAA......2711.0010100000000
......................................................................................................................................CGAATGATAAACTCCATGG...................................................................1940.2510010000000
droPer2
-A-------TAATGAACGGCGGCACTGGCTA---T------GGCAAGG---AGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGA-ATCGAAT----CGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTCCTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................A---T------GGCAAGG---AGGACAACAACCACCAC........................................................................................................................................................2612.002200000
.....................................................................................................................................................................................CTCCGAGAATCGTCGCCTG....................1912.002200000
..............................A---T------GGCAAGG---AGGACAACAAC..............................................................................................................................................................2011.001010000
....................GGCACTGGCTA---T------GGCAAGG---AGGA.....................................................................................................................................................................2311.001010000
..................................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTG....................2211.001100000
...............................................G---AGGACAACAACCACCACGA......................................................................................................................................................2011.001010000
.A-------TAATGAACGGCGGCACT..................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTGC...................2811.001100000
.............................................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTG....................2711.001100000
.......................................................................................GTAAGCAGCGATTGA--TCAAT...............................................................................................................2011.001000001
droAna3
-----------------GGCGGCACCGGCTACCGTGGTCCCGGGGACG---AC---------------GACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGAAT-----A-GCT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTGCTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................231266.0026615526117265
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................221226.002261416226843
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................211215.0021561231194107
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................201143.00143700265105
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................241101.0010146340885
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................21119.00191800100
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................23113.0013330007
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................25111.0011230213
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................22110.00101000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................2419.009090000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................2018.008800000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................2414.004200110
.......................................................................................GTAAGCAGTGTTTGAACTCGA................................................................................................................2113.003300000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................2313.003020001
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................2013.003000003
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................2313.003120000
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................1913.003001002
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2713.003100011
............................................................................................................................................ATAAGCTCAATTAACTGTTT----G.......................................................2113.003000003
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAG....................................................2113.003300000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT.................................................2612.002000002
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACT...................................................2412.002200000
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................1812.002000002
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................2312.002200000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GA......................................................2112.002000101
................................................................................................................T-TGGAAT-----A-GCT------CCCGATAAGCT.........................................................................2211.001000001
.............................................................................................................................................TAAGCTCAATTAACTGTTT----A.......................................................2011.001100000
.....................................................................................................................................................................................................CTCCTCAACGGCCTCCAGCTGCT2311.001000010
..........................................................................................AGCAGTGTTTGAACTCGATC--T-TGGA......................................................................................................2511.001100000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2511.001100000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAA....................................................2211.001100000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2611.001100000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................2511.001010000
....................GGCACCGGCTACCGTGGTCCCGGGGA..............................................................................................................................................................................2611.001100000
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................2211.001000100
.....................................................................................................................................................................................................CTCCTCAACGGCCTCCAGCT...2011.001001000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................2411.001000001
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA.................................................2511.001010000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2611.001100000
...............................................................................................................................................AGCTCAATTAACTGTTT----G.......................................................1811.001100000
...........................................................................................................................................................................ATGGCATCTTCTCGGAGAAT.............................2011.001000100
.......................................................................................................CTCGATC--T-TGGAAT-----A-GCT------CC..................................................................................2011.001000010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................1911.001000100
...........................................................................................GCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2311.001100000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCA.....................................................2011.001100000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG....................................................2411.001000001
..........................GGCTACCGTGGTCCCGGGGA..............................................................................................................................................................................2011.001100000
...............................................G---AC---------------GACAACGAATCCGTACAGTCC...................................................................................................................................2411.001010000
..................................TGGTCCCGGGGACG---AC---------------GACAAC..................................................................................................................................................2211.001100000
.................................................................................................................................................CTCAATTAACTGTTT----GCA.....................................................1811.001100000
..........................................................................................................GATC--T-TGGAAT-----A-GCT------CCCGATAA............................................................................2311.001000010
.......................ACCGGCTACCGTGGTCCCGGGGA..............................................................................................................................................................................2311.001100000
......................................................................................................ACTCGATC--T-TGGAAT-----A-GCT------CCCGATA.............................................................................2611.001100000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----T.......................................................2011.001000010
......................................................................................................ACTCGATC--T-TGGAAT-----A-GCT------CCC.................................................................................2211.001010000
...........................................................................................................................................................................................GAATCGACGTCTCCTCAACGGCCT.........2411.001100000
...............................................................................................TGTTTGAACTCGATC--T-TGG.......................................................................................................1911.001100000
................................................................................................................T-TGGAAT-----A-GCT------CCCGATAAGC..........................................................................2111.001000100
droBip1
-G-GA--GATAATGAACGGCGGCACTGGATACCGGGGACCTGGCGACG---AG---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGAAT-----A-GCT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
-----------ATGAACGGCGGCACCGGTTATCATCCATCGGGCGAGGACAAT---------------GACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--T-CGTATT-AATTGGTCT------TCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
-GTGA--GATTATGAACGGCGGCAGCGGCTTCCGT------GGCGAGG---AT---------------GACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--T-TGGATC---TTGGAC-------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
-GCGA--GATTATGAACGGAGGCAGTGGTTTCCGT------AACGAGG---AC---------------GACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTGGACT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTGCTSizeHit CountTotal NormTotal
No Reads
droRho1
-GCGA--GATTATGAACGGTGGCAGCGGATTCCGT------GGCGAAG---AT---------------GACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTAGATT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
-GTGA--GATCATGAACGGCGGCAGCGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--T-----------TGGACT------CCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTGCTSizeHit CountTotal NormTotal
No Reads
droTak1
-GCGA--GATTATGAACGGCGGCAGCGGCTTCCGC------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--C-CGGATC---CTGAACT------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTGCTSizeHit CountTotal NormTotal
No Reads
droEug1
-ATGA--GATTATGAATGGAGGCAGTGGATTCCGC------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGATC---TTGGACT------CCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTGCTSizeHit CountTotal NormTotal
No Reads
dm3
CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTGCTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................2212690.002690000031000001010002000113000012315911001030002120013190000024000000000000000000131010800000093106130215517005266012111415010020234331280113200242283000000010000020000000220001000013000001411410124001965333171011950000053352000060300000024000000393525311328186792210599400631000020871213711122061823101430121479511225461015732420541000140592542014814120024202101361213022403410011000018602107165523860
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................2312396.0023960000000000000100061000000010238771100112400111221110020000741000000000000000002115131700044041113001211022312092510111100602300000120505300000031301200011100190000013002000003125019001884399261810001048114200010140000000000000101142211011311926113379682044300280000230141161847141291157619651244501826259111301020511851297817111061070110122724133110620012000212201201813980
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................2111510.00151000002000000000300100000200101144450100100001000000013010004100000000000000000041222000000100000032200002110020010000001191709016450652217000000010001000200008000000001200100761060450143481481880104700020890120000000000000000000000010500517152891934619002700000000610170830683611651212314001501020111004020112053001131720101001020051131300016010001300001601010052411150
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................241844.0084400000000000001000000000000000000000020010220002110421000000000000000000000009855000020101020032140011140369010060000072020101041210000001030027000595041005200000200000171501500160100200000000230400000030000003100000045065874131022501061040100200002300034400000657312011954660172813440020000002191640001024413003122624110923210600261002211310221215170
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................201464.0046400000000000000300000000000300000000000000000010000200000000000000000000000002000000000000000000010000000000000000000500002000406200000000000000000020110000000000000001521040051208080400102011802000030300000000000000031001001020001300000000001611103311131100150110210100311422370001013721023918300010020000401100002110001011020432301011316860
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................231229.002290000000000000000000000010000200000000000000000000000000000000000000000000000000102000000002000000000000000000001000001000000000000000001000000000000030000000000000003100000000230120000011120000101000000300000001210144212311019207000001010113000001012402222420000664100000100171310020302112135251110120232351200101102600101042840
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................241204.002040000000000000000000000000000000000001000011000101020000000000000000000000000000100000000000001001000090000000010000010020011010200000000100001001000000000000000000005206000602010200000000000000100000000000000000000320392168527200200000102000102000201020101110102002010210002011202021340013000101100103000614100130001100000035440
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................25179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001102000200000050000000000000000000000000000100000200000001000000001220101012000000000100010030000000020013300210200001000001000000003000001000001001021110570
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................18172.00720000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000001030400000000000000000000000000000000000010000000001000000000000000000010000020000000000010000000000000000204403220300000029000100000000000022102105000000
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................19170.0070000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000010000010000020000000030000000000000000000000300001100000000000000000300000000001000000000000000000000000000000000000101052050000004200400000000001008042822000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................27154.00540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182860000000000000000000000000000000000000000000000000000000000000000600000000000001010002040000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000010300000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGATC.................................................26154.005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................23146.00460000100010000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000010000001000000000000200000000000000001000000000000000000001002000102020000000011000000101000000000000000000000011024010000100000000000000000000000000000100000000010000000200000000010000000000000000000000000000000000000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAT....................................................23138.0038000000000000000000000000000000000000001000000000000000000000000000000000000011000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020100020102010000001000000010000000000000000000000011010105200200000000001001100000100001000001001110000000000100000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................26134.0034000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000100000000000000000000000000000000000000000020000000000110000000000000000000000000000000000000000000100011000000001000000000303500001100000000000000000000000000000000000000000000000000000000000000001001200101100001000000000000000100000000
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................18131.0031000000000000000000000100000010000000100000000100000000000000000000000000000000000000000000000100000000000000000000000000000000120011800000000000000001000000000000000000000000010000000301000000000000000000000000000011000010000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAATC..................................................25129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA.................................................26129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000100000110000000000000000000100000000000000000000000000030000000000000000000020011001000000000000000000000000000000000000012000020116000000000001000000000000000000000000000000000000010000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................21124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200010100000000000000000000000000000000000000000320300001103041000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................20123.0023000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010100000000000000020000000000000000000000000000011100000000000000000000000001000100000000001000001020000000000000000000010000101001000000000100000001000200000000
.......................................................................................GTAAGCAGTGTTTGAACTCGA................................................................................................................21123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000001300000000100000000000000200000000000000101000010001000000000010010010000000000000100010000000000000000000000110
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................22121.0021000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000100001000000100000000000020000100011110000000000001000000010000000000000000100010000000000200000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCC.....................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100010003114000000000000000000000000000000000000110200000000000000000000000000000000000000000000000000000000000000000000110000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................19120.0020000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002200000000000000000000000000300000130000110000010000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCA.......................................................................21117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000001100000000000000000000000000000000000000000000000000000000000001000000000000000001010810000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000001000000000000000000000000000000000010203300000000000000000000000000100000000000000010002000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................25114.0014000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000010000000000000000000000000000001000000000000001100000000000000000000000000100000000000000002000020001000000000000000000000000000000000010000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000320000010103000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................T-TGGTTC---TTGGACT------CTTGA...............................................................................19114.0014000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000001003000000000000000000000000000000000000000000100000000000000000100000000000101001001000100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................23111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000001110000000000000000000000000011000000000000000000200
.............................................................................................................................................TAAGCTCAATTAACTGTTT----T.......................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000100000100201000003000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................24110.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000010000000000000000000000000000000011000000000000000001000000000000000000000000010000000000000000000010000000000100000000000000000000000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCATT...................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001001000000000000000100000000000000000000000000000000000000000000010000000011010000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCA.......................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000002000300000010
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000020300000000000000000000000000000000000000000010001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCT.....................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000420000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCA.....................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCG.....................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG...................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................2417.007000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000010000000000000010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GT......................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATA--............................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA..................................................2516.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000000000000000000000100100000000000000000000000100000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--............................................................................................................2216.006000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000100000000000000000000
..............................................................................................GTGTTTGAACTCGATC--T-TGGT......................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----G.......................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GC......................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGGT......................................................................................................2815.005000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GATC....................................................2324.509000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000072000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCA.......................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000010100000000
..................................................................................................................................................TCAATTAACTGTTT----GCAG....................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................AGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGT...................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA...................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG....................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCTCAATT....................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACT...................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGACTG....................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAAT.....................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GG......................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CTTCAGGGATTGCAGCTGC.1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--A-..........................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GA......................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACA...................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................GACTGCTTCAGGGATTGC.......1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGCT.........................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT.................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCT.........................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001100000000
...........................................................................................GCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TCTTCTCGGAGAATCGAC.........................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAT.................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAT...................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................T-TGGTTC---TTGGACT------CTTGT...............................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATT--............................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAA.................................................2612.002000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT...................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCT.........................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA.................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
.........................................GGCGAGG---AT---------------GACAACGAAT..............................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA.................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT...................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAA......................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTA..................................................2312.002000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAATCGACGACTGCTTCAGGGAT..........2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGA.......................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTG----C.......................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CTCAATTAACTGTTT----GCAG....................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TATC......................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................271348.00348327915500000000100000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................211183.00183137111312511210000000
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................19199.00997771130000000100000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................25169.0069160530000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCA.......................................................................23165.0065063110000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................22156.00566017411521260200000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTC........................................................................22150.00501371110000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................23148.004812121316101001001000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCT.........................................................................21136.0036030510000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................23135.0035671911000001000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCA.......................................................................21133.0033028500000000000000
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................18126.0026018210000000500000
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................18123.0023500031400001000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................24123.002300000056660000000
...............................................................................................TGTTTGAACTCGATC--T-TGG.......................................................................................................19121.0021018210000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCT.........................................................................19120.0020019010000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCA.......................................................................22119.0019012420000000100000
...........................................................................................GCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................23118.0018014400000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTC........................................................................20118.0018016200000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGCG..................................................25117.0017000051200000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGGT......................................................................................................28116.001607180000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................26116.0016032110000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................24115.001536600000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................19114.0014100001300000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAATTAACT................................................................28113.0013012100000000000000
..............................................................................................GTGTTTGAACTCGATC--T-TGG.......................................................................................................20113.0013010200000000100000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAATTAAC.................................................................27113.0013010300000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................20112.001280010300000000000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAGCT.........................................................................26111.001109110000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGC..........................................................................20110.001004600000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTC........................................................................21110.001014500000000000000
.............................................................................................AGTGTTTGAACTCGATC--T-TGG.......................................................................................................2119.00908100000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGC..........................................................................1818.00804400000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAATTAAC.................................................................2918.00805030000000000000
......................................................................................................ACTCGATC--T-TGGTTC---TTGGACT------....................................................................................2217.00714200000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................2317.00700000000160000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2617.00702050000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCTC........................................................................1917.00701600000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................2417.00701050000000100000
......................................................................................................................TC---TTGGACT------CTTGATAAGCT.........................................................................2017.00705110000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAA......................................................................2217.00703400000000000000
..............................................................................................GTGTTTGAACTCGATC--T-TGGT......................................................................................................2116.00603300000000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGCTC........................................................................2316.00605100000000000000
..........................................................................................................GATC--T-TGGTTC---TTGGACT------CTTG................................................................................2216.00604020000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................2315.00510010000120000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAA......................................................................2415.00505000000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAATTAAC.................................................................2815.00503200000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCT.........................................................................1815.00503110000000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGCT.........................................................................2215.00502300000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCC.........................................................................2114.00403100000000000000
..........................................................................................AGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2414.00403010000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGC..........................................................................1914.00401210000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAATTAACT................................................................2914.00403100000000000000
............................................................................................CAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2213.00303000000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................2213.00301020000000000000
.......................................................................................................CTCGATC--T-TGGTTC---TTGGACT------CTTGAT..............................................................................2713.00302100000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................2013.00300010000100100000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAGCTCA.......................................................................2813.00300120000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2513.00302000000001000000
.....................................................................................................................................................................................CTCGGAGAATCGACGACT.....................1813.00301200000000000000
................................................................................................................T-TGGTTC---TTGGACT------CTTGA...............................................................................1913.00310200000000000000
...................................................................................................................................................................................TTCTCGGAGAATCGACGAC......................1912.00200200000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAAT.....................................................................2512.00202000000000000000
........................................................................................................................................................................CGGACGGCATCTTCTCGGA.................................1912.00201100000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGGG......................................................................................................2812.00202000000000000000
.......................................................................................GTAAGCAGTGTTTGAACC...................................................................................................................1812.00202000000000000000
........................................................................................................................................................................CGGACGGCATCTTCTCGGAG................................2012.00202000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA..................................................2512.00200000010100000000
................................................................................................GTTTGAACTCGATC--T-TGG.......................................................................................................1812.00202000000000000000
.............................................................................................................................................................................................ATCGACGACTGCTCCAGG.............1812.00200200000000000000
...................................................AT---------------GACAACGAATCTGTACAGT.....................................................................................................................................2112.00202000000000000000
..........................................................................................................GATC--T-TGGTTC---TTGGACT------CTTGA...............................................................................2312.00201010000000000000
................................................................................................................T-TGGTTC---TTGGACT------CTTGATAAGCT.........................................................................2512.00220000000000000000
.......................................................................................................................................................................................CGGAGAATCGACGACTGCTC.................2012.00201100000000000000
......................................................................................................ACTCGATC--T-TGGTTC---TTGGAC...........................................................................................2112.00211000000000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGCTCA.......................................................................2412.00202000000000000000
................................................................................................GTTTGAACTCGATC--T-TGGT......................................................................................................1912.00202000000000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TGGT......................................................................................................2612.00201010000000000000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGA.......................1912.00201100000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA...................................................2412.00200000000110000000
...............................................................................................TGTTTGAACTCGATC--T-TGGT......................................................................................................2012.00202000000000000000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAGCC.........................................................................2612.00202000000000000000
......................................................................................................ACTCGATC--T-TGGTTC---TTGGACT------CTTGATA.............................................................................2912.00202000000000000000
........................................................................................................TCGATC--T-TGGTTC---TTGGACT------CT..................................................................................2212.00220000000000000000
.............................................................................................AGTGTTTGAACTCGATC--T-TGGT......................................................................................................2212.00201000000000100000
........................................................................................................TCGATC--T-TGGTTC---TTGGACT------CTTGAT..............................................................................2612.00220000000000000000
................................CGT------GGCGAGG---AT---------------GACAACGAATCTGTA.........................................................................................................................................2711.00100000000000010000
......................................................................................................ACTCGATC--T-TGGTTC---TTGGACT------CT..................................................................................2411.00101000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCG.....................................................2211.00110000000000000000
.......GATTATGAACGGAGGCAGTGGA...............................................................................................................................................................................................2211.00100010000000000000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAG...........................................................................2411.00100000100000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................2511.00100000000100000000
..........................................................................................................GATC--T-TGGTTC---TTGGACT------....................................................................................1811.00101000000000000000
...........................................................................................GCAGTGTTTGAACTCGATC--T-TG........................................................................................................2211.00100010000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAG...........................................................................1711.00100000001000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGCC.........................................................................2211.00100100000000000000
..............................................................................................GTGTTTGAACTCGATC--T-TGGTT.....................................................................................................2211.00101000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA.................................................2611.00100000000010000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GA......................................................2111.00110000000000000000
....................................................................................................GAACTCGATC--T-TGGTTC---TTGGACT------C...................................................................................2511.00101000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCT.....................................................2211.00110000000000000000
........................................................................................TAAGCAGTGTTTGAACTCGA................................................................................................................2011.00110000000000000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2411.00100010000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAA......................................................................2311.00100100000000000000
................................................................................................................T-TGGTTC---TTGGACT------CTTGG...............................................................................1911.00110000000000000000
................................................................................................................................CT------CTTGATAAGCTCAATTAACTGTT.............................................................2511.00100100000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--C-..........................................................................................................2411.00100100000000000000
......................................................................................TGTAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2711.00100010000000000000
............................................................................................................TC--T-TGGTTC---TTGGACT------CTTG................................................................................2011.00101000000000000000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGG...............................................................................2011.00101000000000000000
.........TTATGAACGGAGGCAGTG.................................................................................................................................................................................................1811.00100010000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACT...................................................2411.00100100000000000000
................................................................................................................................................................................ATCTTCTCGGAGAATCGACGACT.....................2311.00101000000000000000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGACTGC...................2311.00100100000000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--G-..........................................................................................................2411.00101000000000000000
...........................................................................................................................................GATAAGCTCAATTAACTGTTT----GCAG....................................................2511.00100010000000000000
.............................................................................................AGTGTTTGAACTCGATC--T-TGGG......................................................................................................2211.00101000000000000000
...................................................................................................................................................................................TTCTCGGAGAATCGACGACTGC...................2211.00101000000000000000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAGC..........................................................................2511.00100010000000000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2511.00100010000000000000
.............................................................................................AGTGTTTGAACTCGATC--T-TGGTT.....................................................................................................2311.00101000000000000000
..............................................................................................................................GACT------CTTGATAAGCTCAATTAACT................................................................2411.00100010000000000000
................................................................................................................................................GCTCAATTAACTGTTT----GC......................................................1811.00101000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAAT.....................................................................2311.00101000000000000000
........................................................................................................TCGATC--T-TGGTTC---TTGGAC...........................................................................................1911.00110000000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCTCAATTAAC.................................................................2611.00101000000000000000
.........................................................................................................CGATC--T-TGGTTC---TTGGACT------CTTGAT..............................................................................2511.00101000000000000000
...................................................................................................................................................CAATTAACTGTTT----GCAGT...................................................1811.00100010000000000000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGG.......................1911.00100100000000000000
.....................................................................................................AACTCGATC--T-TGGTTC---TTGGAC...........................................................................................2211.00101000000000000000
.................................................................................................................................................CTCAATTAACTGTTT----GCAG....................................................1911.00100000000001000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCG.......................................................................2211.00100010000000000000
...........................................CGAGG---AT---------------GACAACGAATCT............................................................................................................................................1911.00100010000000000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--............................................................................................................2211.00100100000000000000
.........................................................................................................CGATC--T-TGGTTC---TTGGACT------C...................................................................................2011.00101000000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCTCAA......................................................................2111.00100100000000000000
......................................................................................................ACTCGATC--T-TGGTTC---TTG..............................................................................................1811.00101000000000000000
..........................................................................................................................................................................GACGGCATCTTCTCGGAGAATC............................2211.00100010000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................2411.00100001000000000000
.........................................................................................................CGATC--T-TGGTTC---TTGGACT------CTTGATAAG...........................................................................2811.00100010000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCT.......................................................................2311.00101000000000000000
................................................................................................GTTTGAACTCGATC--T-TGGTT.....................................................................................................2011.00101000000000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--............................................................................................................2111.00101000000000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCC.........................................................................2011.00101000000000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2411.00100010000000000000
.......................................................................................................................................................................................................GCTCCAGGGATTGCAGCTGC.2011.00100010000000000000
.................................................................................................................................T------CTTGATAAGCTCAATTAACTGTTT----........................................................2511.00100010000000000000
.............................................................................................................................GGACT------CTTGATAAGCTCA.......................................................................1811.00100000000000100000
......................................................................................................................TC---TTGGACT------CTTGATAAGCG.........................................................................2011.00101000000000000000
...................................................AT---------------GACAACGAATCTGTACAGTC....................................................................................................................................2211.00101000000000000000
..............AACGGAGGCAGTGGATTCCGT------GG.................................................................................................................................................................................2311.00100001000000000000
......................................................................................................ACTCGATC--T-TGGTTC---TTGGACT------CTTGAT..............................................................................2811.00100100000000000000
....................................................................................................................GTTC---TTGGACT------CTTGATAAGC..........................................................................2111.00101000000000000000
...........................................................................................................ATC--T-TGGTTC---TTGGACT------C...................................................................................1811.00101000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCC.......................................................................2111.00101000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCC.........................................................................1911.00101000000000000000
............................................................................................................TC--T-TGGTTC---TTGGACT------CTTGATAAGCT.........................................................................2711.00101000000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAATT....................................................................2611.00101000000000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................2511.00100010000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCG.......................................................................2311.00101000000000000000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCG.........................................................................2111.00101000000000000000
.........................................................................................................................................TTGATAAGCTCAATTAACTGTTT----........................................................2311.00100010000000000000
.................................................................................................TTTGAACTCGATC--T-TGGTTC---TTGGACT------....................................................................................2711.00110000000000000000
....................................................T---------------GACAACGAATCTGTACAGT.....................................................................................................................................2011.00100100000000000000
..............................................................................................GTGTTTGAACTCGATC--T-TG........................................................................................................1911.00100010000000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----G.......................................................1911.00100001000000000000
...................................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC................2511.00101000000000000000
...............................................................................................................................ACT------CTTGATAAGCTCAATTAACTGT..............................................................2511.00100010000000000000
...........................................................................................................................TTGGACT------CTTGATAAGCTCA.......................................................................2011.00101000000000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCG.........................................................................1911.00101000000000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2311.00100010000000000000
.......................................................................................GTAAGCAGTGTTTGAA.....................................................................................................................1620.50100000000001000000
...........................................................................................................................TTGGACT------CTTGATAAGCC.........................................................................1820.50100100000000000000
droSec2
CACGA--GATTATGAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................221164.00164895862
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................231147.0014710641621
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................24191.0091651214
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................20179.007986164
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................21171.0071281042
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................27161.006150560
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................24137.0037153118
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................18123.002300185
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................23113.001311020
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................1919.0090261
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................2219.0099000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................2518.0082105
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................2317.0071060
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2617.0075110
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCA.......................................................................2317.0072221
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCA.......................................................................2116.0060240
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-TGGT......................................................................................................2815.0052300
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................2315.0055000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................2115.0055000
...............................................................................................TGTTTGAACTCGATC--T-TGG.......................................................................................................1914.0043010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA.................................................2613.0030120
.............................................................................................AGTGTTTGAACTCGATC--T-TGG.......................................................................................................2113.0033000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2613.0033000
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................2013.0030210
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGT...................................................2213.0032001
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................2413.0030102
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-T.........................................................................................................2512.0022000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................2012.0022000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTC........................................................................2212.0020110
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................1912.0020011
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................2512.0020002
...........................................................................................GCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2312.0020020
.........................................GGCGAGG---AT---------------GACAACGAAT..............................................................................................................................................1912.0020020
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................1811.0011000
.....................................................................................................................TTC---TTGGACT------CTTGATAAGC..........................................................................2011.0010010
.................................................................................................................................................CTCAATTAACTGTTT----GCAGT...................................................2011.0011000
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-TG........................................................................................................2511.0011000
................................................................................................................T-TGGTTC---TTGGACT------CTTGA...............................................................................1911.0011000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TGGT......................................................................................................2611.0010100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACT...................................................2411.0011000
............................ATTCCGT------GGCGAGG---AT---------------GACAACGAA...............................................................................................................................................2511.0011000
.........................................................................................................................................TTGATAAGCTCAATTAACTGTTT----........................................................2311.0011000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----C.......................................................2011.0011000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA..................................................2511.0010100
......................................................................................................................TC---TTGGACT------CTTGATAAGCT.........................................................................2011.0010100
.........................................................................................................................................TTGATAAGCTCAATTAACT................................................................1911.0010010
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................2311.0010010
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................2211.0010010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................2311.0010001
.....................................................................................................................TTC---TTGGACT------CTTGATAAGCTCAA......................................................................2411.0010100
....................GGCAGTGGATTCCGT------GGCGAGG---AT---------------GAC.....................................................................................................................................................2711.0010100
...........................................................................................................................TTGGACT------CTTGATAAGCTCA.......................................................................2011.0010010
...............................................................................................................................................AGCTCAATTAACTGTTT----G.......................................................1811.0010001
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCA.......................................................................2211.0011000
.............................................................................................................C--T-TGGTTC---TTGGACT------CTTGATAAGCT.........................................................................2611.0011000
...............................................................................................................................................................................................CGACGACTGCTCCAGGGATTGC.......2211.0010010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT.................................................2611.0011000
................................................................................................................T-TGGTTC---TTGGACT------CTTG................................................................................1811.0011000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTC........................................................................2011.0010100
..................................................................................................................................................TCAATTAACTGTTT----GCAG....................................................1811.0011000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAG....................................................2111.0011000
...............................CCGT------GGCGAGG---AT---------------GACAACGA................................................................................................................................................2111.0010100
...............................................................................................................................ACT------CTTGATAAGCTCAATTAACTGTT.............................................................2611.0010010
.............................................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGC.......2411.0010010
.......................................................................................GTAAGCAGTGTTTGAACTCGA................................................................................................................2111.0011000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACA...................................................2411.0010001
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-TGG.......................................................................................................2511.0010010
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCATTT..................................................2611.0011000
............................................................................................................................................ATAAGCTCAATTAACTGT..............................................................1811.0010010
..................GAGGCAGTGGATTCCGT------GGCG...............................................................................................................................................................................2111.0011000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT...................................................2511.0010100
............................ATTCCGT------GGCGAGG---AT---------------GACAA...................................................................................................................................................2111.0010010
.................................GT------GGCGAGG---AT---------------GACAACGAA...............................................................................................................................................2011.0010010
droYak3
-ATGA--GATTATGAACGGAGGCAGCGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-AGGATC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................241427.004270183226231030000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................231306.0030652404491520000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................221164.00164811645111820000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................211112.0011244421007810000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................24185.0085018400000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................23148.00481452710010000
................................................................................................................T-AGGATC---TTGGACT------CTTGA...............................................................................19133.0033192802100010
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................22127.0027027000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-AGGA......................................................................................................28122.0022060000200014
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................20122.002216006900000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................23120.0020019100000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................24117.0017012101300000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................21116.0016016000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-AG........................................................................................................26115.0015010000050000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-AGGAT.....................................................................................................29115.0015000000000015
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-AGG.......................................................................................................27114.0014111100010000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................25113.001317311000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................2418.00833100010000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCA.......................................................................2218.00804000040000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTC........................................................................2117.00713100020000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-A.........................................................................................................2517.00705000020000
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................2216.00605100000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCA.......................................................................2115.00503000020000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAG....................................................2114.00404000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................2314.00402200000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................2014.00404000000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAG....................................................2014.00404000000000
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................1914.00402010010000
....................................................................................................................GATC---TTGGACT------CTTGATAAGCT.........................................................................2214.00410200010000
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................1814.00440000000000
......................................................................................................................TC---TTGGACT------CTTGATAAGC..........................................................................1913.00301200000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCT.........................................................................2013.00311000010000
.......................................................................................GTAAGCAGTGTTTGAACTCGA................................................................................................................2113.00301100010000
.............................................................................................AGTGTTTGAACTCGATC--T-AGGA......................................................................................................2213.00302100000000
..................................................................................................................................................TCAATTAACTGTTT----GCAGT...................................................1913.00302010000000
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................1813.00301010010000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAATTAACT................................................................2913.00311100000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG....................................................2413.00303000000000
.....................................................................................................................ATC---TTGGACT------CTTGATAAGCTCA.......................................................................2313.00302000010000
.................................................................................................................................................CTCAATTAACTGTTT----GCAGT...................................................2013.00302000010000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCATT...................................................2412.00201000100000
.....................................................................................................................ATC---TTGGACT------CTTGATAAGCTC........................................................................2212.00211000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAT....................................................2312.00201000100000
.................................................................................................................................T------CTTGATAAGCTCAATTAACTGTTT----GC......................................................2712.00201100000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................2512.00202000000000
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................2012.00201000010000
................................................................................................................T-AGGATC---TTGGACT------CTTGG...............................................................................1912.00220000000000
.......................................................................................................CTCGATC--T-AGGATC---TTGGACT------CTTGA...............................................................................2612.00201100000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAA......................................................................2312.00202000000000
....................................................................................................................GATC---TTGGACT------CTTGATAAGCTCA.......................................................................2412.00201000010000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCAAT.....................................................................2312.00202000000000
............................................................................................................................................................................................AATCGACGACTGCTCCAGGGATTGC.......2512.00201000010000
..............................................................................................................................................AAGCTCAATTAACTGTTT----G.......................................................1912.00202000000000
.....................................................................................................................................................................................................CTGCTCCAGGGATTGCAGCTG..2112.00200000020000
...............................................................................................................................................AGCTCAATTAACTGTTT----GC......................................................1912.00202000000000
.......................................................................................................CTCGATC--T-AGGATC---TTGGACT------CT..................................................................................2312.00202000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................1912.00220000000000
.ATGA--GATTATGAACGGAGGC.....................................................................................................................................................................................................2012.00200000020000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGT...................................................2212.00202000000000
.......................AGCGGATTCCGT------GGCGAGG---AT---------------........................................................................................................................................................2112.00201010000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-AGG.......................................................................................................2512.00202000000000
..........................GGATTCCGT------GGCGAGG---AT---------------GACAACG.................................................................................................................................................2511.00101000000000
......................................................................................................ACTCGATC--T-AGGATC---TTGGACT------CTTG................................................................................2611.00101000000000
..............................................................................................................................................................................................TCGACGACTGCTCCAGGGA...........1911.00100000010000
.......................................................................................................................................................................................................GCTCCAGGGATTGCAGCTGC.2011.00100000010000
.......................................................................................................CTCGATC--T-AGGATC---TTGGACT------CTTG................................................................................2511.00101000000000
...........................................................................................................................................................................................GAATCGACGACTGCTCCAGGGAT..........2311.00101000000000
........................................................................................................................................................................CGGACGGCATCTTCTCGGA.................................1911.00101000000000
................................................................................................................................CT------CTTGATAAGCTCAATTAAC.................................................................2111.00101000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----........................................................2011.00101000000000
.............................................................................................................C--T-AGGATC---TTGGACT------CTTGATAAGCTCA.......................................................................2811.00100000010000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCAG......................................................................2311.00100100000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCC.....................................................2211.00100000100000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGTT..................................................2611.00101000000000
........................................................................................TAAGCAGTGTTTGAACTCGA................................................................................................................2011.00101000000000
..TGA--GATTATGAACGGAGGC.....................................................................................................................................................................................................1911.00101000000000
.............................................................................................................................................................................................ATCGACGACTGCTCCAGGGATT.........2211.00100000010000
............................................................................................................................................ATAAGCTCAATTAACTGTT.............................................................1911.00101000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----T.......................................................2111.00100000100000
......................................................................................................................................................................................................TGCTCCAGGGATTGCAGCTG..2011.00101000000000
......................................................................................................................................................................................................TGCTCCAGGGATTGCAGCTGCT2211.00101000000000
.............................................................................................................................................................................................ATCGACGACTGCTCCAGGGA...........2011.00100000010000
.........................................GGCGAGG---AT---------------GACAACGAAT..............................................................................................................................................1911.00100000010000
..................................................................................................................................................................................CTTCTCGGAGAATCGACGACC.....................2111.00100100000000
................................................................................................................................................GCTCAATTAACTGTTT----GCAGT...................................................2111.00101000000000
........................................................................................TAAGCAGTGTTTGAACTCG.................................................................................................................1911.00101000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACT...................................................2411.00100100000000
............................................................................................................................................................................CGGCATCTTCTCGGAGAATC............................2011.00100000010000
................................................................................................................................CT------CTTGATAAGCTCAATTAACTGTTT----GC......................................................2811.00101000000000
................................................................................................................T-AGGATC---TTGGACT------CTTGC...............................................................................1911.00110000000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GC......................................................2211.00110000000000
..............................................................................................................................GACT------CTTGATAAGCTCAATTAACTGTTT----........................................................2811.00101000000000
...............................................................................................................................................................................................CGACGACTGCTCCAGGGATTGCAGCT...2611.00100000010000
.....................................................................................................................ATC---TTGGACT------CTTGATAAGCTCAAT.....................................................................2511.00101000000000
.................................................................................................................................T------CTTGATAAGCTCAATTAACTGTT.............................................................2411.00101000000000
..........TATGAACGGAGGCAGCGG................................................................................................................................................................................................1811.00101000000000
........................GCGGATTCCGT------GGCGAGG---AT---------------........................................................................................................................................................2011.00101000000000
............................................................................................CAGTGTTTGAACTCGATC--T-AGGA......................................................................................................2311.00101000000000
.............................................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGCAGC....2711.00100000010000
...................................................................................................................................................CAATTAACTGTTT----GCAGT...................................................1811.00101000000000
..............................................................................................................................................................................................TCGACGACTGCTCCAGGGATTG........2211.00101000000000
.................................................................................................................................T------CTTGATAAGCTCAATTAACTGTTT----........................................................2511.00101000000000
.......................AGCGGATTCCGT------GGCGAGG---A........................................................................................................................................................................2011.00100000010000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACA...................................................2411.00101000000000
................................................................................................................................................................................................GACGACTGCTCCAGGGATTGCAGCTG..2611.00101000000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCT.........................................................................1911.00110000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAC.................................................2611.00110000000000
.............................................................................................................C--T-AGGATC---TTGGACT------CTTGATAAGC..........................................................................2511.00100100000000
..............................TCCGT------GGCGAGG---AT---------------GACAA...................................................................................................................................................1911.00101000000000
.........................................................................................AAGCAGTGTTTGAACTCGATC--T-AGGAT.....................................................................................................2711.00101000000000
.............................................................................................AGTGTTTGAACTCGATC--T-A.........................................................................................................1911.00101000000000
................................................................................................................T-AGGATC---TTGGACT------CTTGATAAGCT.........................................................................2511.00100000100000
............................................................................................................TC--T-AGGATC---TTGGACT------CT..................................................................................1811.00110000000000
..................GAGGCAGCGGATTCCGT------GGC................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCACT...................................................2311.00100100000000
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGTT..................................................2311.00101000000000
.....................................................................................................................................................................................................CTGCTCCAGGGATTGCAGCTGG.2211.00101000000000
..........................................................................................AGCAGTGTTTGAACTCGATC--T-A.........................................................................................................2211.00101000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC..................................................2511.00100100000000
.....................................................................................................................................................................................CTCGGAGAATCGACGACTGCTC.................2211.00101000000000
.............................................................................................................C--T-AGGATC---TTGGACT------CTTGATAAGCT.........................................................................2611.00110000000000
.......GATTATGAACGGAGGCAGCGGA...............................................................................................................................................................................................2211.00100000010000
....................................................................................................GAACTCGATC--T-AGGATC---TTGGACT------CTTGG...............................................................................2911.00110000000000
.......................................................................................GTAAGCAGTGTTTGAACTCGAC...............................................................................................................2211.00100100000000
....................................................................................................GAACTCGATC--T-AGGATC---TTGGA............................................................................................2211.00101000000000
...................................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC................2511.00101000000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCACTT..................................................2411.00101000000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG...................................................2411.00101000000000
.........................................................................................AAGCAGTGTTTGAACTCGA................................................................................................................1911.00101000000000
..........................................................................................................................................................................GACGGCATCTTCTCGGAGAATCGACGA.......................2711.00100000010000
................................................................................................................................................................................................GACGACTGCTCCAGGGATT.........1920.50101000000000
..................................................................................................................................................TCAATTAACTGTTT----GCAGTT..................................................2020.50101000000000
...................................................................................................................................................CAATTAACTGTTT----GCAGTT..................................................1950.20101000000000
..........................GGATTCCGT------GGCGAGG---AC---------------CT......................................................................................................................................................2090.11100000100000
droEre2
-------------GAACGGAGGCAGTGGATTCCGT------GGCGAGG---AT---------------GACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-GGGATC---TTGGACT------CTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTGCTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCA.....................................................221488.004882051550172100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAG....................................................231434.0043429376651170
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GC......................................................211290.0029067316281940
.............................................................................................................................................TAAGCTCAATTAACTGTTT----G.......................................................201153.0015311113051230
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT...................................................241105.00105821340330
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA...................................................24128.002861402150
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAG....................................................22120.002020000000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-GGG.......................................................................................................27117.00178010800
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--............................................................................................................23116.00164320160
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCA.....................................................21115.001515000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT..................................................25114.00143100370
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-GG........................................................................................................26114.00148000420
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-GGGA......................................................................................................2817.0072000500
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-G.........................................................................................................2517.0073000310
.......................................................................................GTAAGCAGTGTTTGAACTC..................................................................................................................1916.0060000510
.......................................................................................GTAAGCAGTGTTTGAACTCG.................................................................................................................2016.0060000330
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC...................................................2415.0052300000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAA....................................................2315.0051000040
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGT...................................................2315.0055000000
.......................................................................................GTAAGCAGTGTTTGAACT...................................................................................................................1814.0040000040
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAT....................................................2314.0042000020
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAC....................................................2314.0043000010
...............................................................................................................................................AGCTCAATTAACTGTTT----GCA.....................................................2013.0033000000
........................................................................................TAAGCAGTGTTTGAACTCGATC--............................................................................................................2213.0030010020
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-..........................................................................................................2413.0032000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA..................................................2513.0030000030
.......................................................................................................................C---TTGGACT------CTTGATAAGCTCA.......................................................................2112.0020000200
...............................................................................................................................................AGCTCAATTAACTGTTT----GCAGT...................................................2212.0021010000
...........................................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT...................................................2612.0020000110
..............................................................................................................................................AAGCTCAATTAACTGTTT----GC......................................................2012.0021000010
.............................................................................................................................................TAAGCTCAATTAACTGTT.............................................................1812.0020000020
.......................................................................................GTAAGCAGTGTTTGAACTCGA................................................................................................................2112.0020000020
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA.................................................2612.0020000020
.............................................................................................AGTGTTTGAACTCGATC--T-GGG.......................................................................................................2111.0011000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----........................................................1911.0010000010
......................................................................................................................TC---TTGGACT------CTTGATAAGCT.........................................................................2011.0010000100
.................................GT------GGCGAGG---AT---------------GACAACGA................................................................................................................................................1911.0011000000
......................................................................................................................TC---TTGGACT------CTTGATAAGCTCA.......................................................................2211.0010001000
...........................GATTCCGT------GGCGAGG---AT---------------GACAACGAAT..............................................................................................................................................2711.0010001000
.......................................................................................GTAAGCAGTGTTTGAACTCGATC--T-GGGG......................................................................................................2811.0011000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----G.......................................................1911.0011000000
................................................................................................................................................................................................GACGACTGCTCCAGGGATT.........1911.0010000010
.......................................................................................................................C---TTGGACT------CTTGATAAGCT.........................................................................1911.0010000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCG.....................................................2211.0010000010
.......................AGTGGATTCCGT------GGCGAGG---.........................................................................................................................................................................1911.0010000100
............................................................................................CAGTGTTTGAACTCGATC--T-GGG.......................................................................................................2211.0010000010
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCA.....................................................2311.0010010000
.......................................................................................GTAAGCAGTGTTTGAACTCGAT...............................................................................................................2211.0010001000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GC......................................................2211.0010000010
...............................................................................................................................................................................................CGACGACTGCTCCAGGGA...........1811.0010000010
............................................................................................................................TGGACT------CTTGATAAGCTCAA......................................................................2011.0011000000
.........................................................................................................CGATC--T-GGGATC---TTGGACT------CTTGATA.............................................................................2611.0010000010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCACTT..................................................2511.0010000010
...........................................................................................................ATC--T-GGGATC---TTGGACT------CTTGA...............................................................................2211.0010000100
.......................AGTGGATTCCGT------GGCGAGG---AT---------------........................................................................................................................................................2111.0010000100
.........................................................................................................................................................................GGACGGCATCTTCTCGGAGAATCGA..........................2511.0010000100
...................................................................................................................................................CAATTAACTGTTT----GCAGT...................................................1811.0011000000
..............................................GG---AT---------------GACAACGAATCTGTTCAGT.....................................................................................................................................2311.0011000000
............................................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG....................................................2411.0011000000
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCATT...................................................2411.0010010000
........................GTGGATTCCGT------GGCGAGG---AT---------------GACA....................................................................................................................................................2411.0010000010
.................................................................................................................................................CTCAATTAACTGTTT----GCAG....................................................1911.0011000000
...........................................................................................................................TTGGACT------CTTGATAAGCTC........................................................................1911.0010000100
............................ATTCCGT------GGCGAGG---AT---------------GACAACG.................................................................................................................................................2311.0010000100
.......................AGTGGATTCCGT------GGCGAGG---AT---------------GAC.....................................................................................................................................................2411.0010000100
.....................GCAGTGGATTCCGT------GGCGAGG---AT---------------GACA....................................................................................................................................................2711.0011000000
.....................................................................................................................ATC---TTGGACT------CTTGATAAGCTCA.......................................................................2311.0010000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA..................................................2511.0011000000
..............................................................................................................................................AAGCTCAATTAACTGTTT----GCAGA...................................................2311.0011000000
...........................................................................................................................TTGGACT------CTTGATAAGCTCA.......................................................................2011.0010000010
........................................................................................TAAGCAGTGTTTGAACTCGATC--T-GG........................................................................................................2511.0011000000
........................................................................................................................................................................................GGAGAATCGACGACTGCTCCAGGGAT..........2611.0010000100
.....................................................................................................................ATC---TTGGACT------CTTGATAAGCTC........................................................................2211.0010000100
.........................................................................................AAGCAGTGTTTGAACTCGAT...............................................................................................................2011.0011000000
.......................................................................................................................C---TTGGACT------CTTGATAAGCTC........................................................................2011.0010000100
.........................................GGCGAGG---AT---------------GACAACGAATCTGTTCAGT.....................................................................................................................................2811.0010000100
.............................................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA...................................................2411.0010010000
.............................................................................................................................................TAAGCTCAATTAACTGTTG----........................................................1920.5010000010
.............................................................................................................................................TAAGCTCAATTAACTGTTT----CA......................................................2120.5011000000
.............................................................................................................................................TAAGCTCAATTAACTGTTC----A.......................................................2040.2511000000

Generated: 10/20/2015 at 07:28 PM