dmo_849

CDS [Dmoj\GI14338-cds]; exon [dmoj_GLEANR_14799:2]; exon [dmoj_GLEANR_14799:1]; CDS [Dmoj\GI14338-cds]; intron [Dmoj\GI14338-in]

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-
(CTG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------------------------------------------------------------################################################## AGCAGATAAGCGTGGTCAAATTGAACGACAGTCAGAGCGATAGCGAGATGGTGTTACGGCTCAAGCAAGAGCAACACGAGCAACATCAGCAACACCAGCAGCAGCAGTTGCAGTTACACTTACCGCTACAGCAGCAGCAGCAGCAATTACAAACGGGATCACAAACTATCACAACGCCGTATCAGCTATGCTATTTGGTCTCCAGCGGACAGTATTCGCCCTGCGAGACTTTGGA ************************************************(((((...((((......)))))))))....................((.((.((.(((((.((.............)).))))).)).)).))........((((....................)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body
......................................................................................................AGCAGTTGCAGTTACACTT..................................................................................................................	19	0	1	1.00	1	1	0
.........................................................................................CAACACCAGCAGCAGCAGT...............................................................................................................................	19	0	4	0.25	1	0	1
........................................................................................................................................................................................................................CGCCCTGTGTAACTTTGG.	18	3	20	0.05	1	0	1

TCGTCTATTCGCACCAGTTTAACTTGCTGTCAGTCTCGCTATCGCTCTACCACAATGCCGAGTTCGTTCTCGTTGTGCTCGTTGTAGTCGTTGTGGTCGTCGTCGTCAACGTCAATGTGAATGGCGATGTCGTCGTCGTCGTCGTTAATGTTTGCCCTAGTGTTTGATAGTGTTGCGGCATAGTCGATACGATAAACCAGAGGTCGCCTGTCATAAGCGGGACGCTCTGAAACCT ************************************************(((((...((((......)))))))))....................((.((.((.(((((.((.............)).))))).)).)).))........((((....................)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V041 embryo	M060 embryo
..........................................................CGAGTTCGTTCTCGTTGTGC.............................................................................................................................................................	20	0	1	1.00	1	1	0	0
...................................TCGCTATCGCTCTACCACAAT...................................................................................................................................................................................	21	0	1	1.00	1	0	1	0
.........................................................................................................................................................................................................GGTCGACCGTCATAAGGGGG..............	20	3	5	0.20	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6482:1485794-1486028 -	dmo_849	AGCAG-ATAAGCGTGGTCAAATTG-------AACGACAGTCA-----------GAGCGATAGCGAG---ATGGTGTTAC-------------------------------------------GGCTCAAGCAAGAGCA---------------AC------ACG--A--------------------------------------------------------------------------------------------------------GCAACATCAGC---------------------------------AACAC------------------------------------CAGCAGCAGCAGTTGCAGTTACACTTACCGCTACAG------CAGCAGCAGCAGC-----------------------------A-----------------------------------------ATT---------------ACAAACGGGATCACAA--------------------------------------------------------------------------------------------------ACTATCACAACGCCGTATCAGCTATGCTATTTGGTCTCCAGCGGA--CAGTATTCGCCC-----TGCG-AGACTT---TGGA------------------------------
droVir3	scaffold_12970:8047027-8047255 +		AACAG-ATAAGCGTGGTAAAACTG-------AACGACAGCCA-----------AAGCGACAGCGAC---ATGGTATTAC-------------------------------------------ATTTAAAGCAACAGCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCAGGAG------------------------------------------------------GAGCAACA------G---------CAACAGCAGCAATT------------GCTACAATTG------CAGCTGCAGCAGC-----------------------------AA-----------------------------------CAGCATTC---------------GCAAACGGAGGCACAG--------------------------------------------------------------------------------------------------CCACCCACAGCGCCCTATCAGCTATGCTATTTGGTGTCCAGTGGC--CAGTACTCGCCC-----TGCG-AGACTC---TAGA------------------------------
droGri2	scaffold_15203:346484-346664 +		AACAG-ATAAGCGTGGTAAAGCTG-------AATGACAGTCG-----------AAGCGGCAGCGAT---ATGATATTAC-------------------------------------------AACTAAAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAACAACAACAAGAG----------------------------------------------------------------------------------------------------------CAGCATTC---------------ACAAGCTGTGTCACCG--------------------------------------------------------------------------------------------------TCTGTTACGGCGCCTTATCAGCTTTGCTATTTGGTGTCCAGTGGC--CAATACTCGCCC-----TGCG-AGACTC---TGGA------------------------------
droWil2	scf2_1100000004909:10384956-10385145 +		AACAA-ATCAGTGTTGTTAAATTG-------AATGACAG-----------------------CAAC---ATGGTATTGCAACAGCAACATCAGCATCAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAGCAACAGCAACAGCA------TGA--AATTGAAACTACACCCACATCGGTATCACC--------------------------------------------------------------------------------------------------A---A-----------CGTC------------------------------------------------------------------------------------TA------ACTATCAATTATGCTATCTAGTATCCAGTGGT--CAGTATTCACCT-----TGCG-AGACTC---TGGA------------------------------
dp5	XL_group1a:7506948-7507125 -		AGCAG-ATCAGTGTGGTCAAGCTG-------AACGACAG-----------------------CGAG---ATGGTTCTTC---AGCAGC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAG---------------------CAGGAGGTAGAG------GAGGTGCAGAAGC-----------------------------AA-----------------------------------CAACAATCTAACAAACAATCTACGCAATC---------G--------------TCGCC------------------------------------------------------------------------------------CA------GCTATCAGCTGTGCTATTTGGTGTCCAGCGGA--CAGTACTCGCCC-----TGCG-AGACCC---TCGA------------------------------
droPer2	scaffold_13:2148232-2148406 -		AGCAG-ATCAGTGTGGTCAAGCTG-------AACGACAG-----------------------CGAG---ATGGTTCTTC---AGCAGC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAG---------------------CAGGAGGTAGAG------GAGGTGCAGAAGC-----------------------------AACAACAGACA--------------------------------------CAAAAATCTACGCAATC---------G--------------TCGCC------------------------------------------------------------------------------------CA------GCTATCAGCTGTGCTATTTGGTGTCCAGCGGA--CAGTACTCGCCC-----TGCG-AGACCC---TCGA------------------------------
droAna3	scaffold_12943:1956308-1956534 -		AGCAGCAGCAGCAACTGCAAATCC-------AGCAGCTG-----------------------CAGC---A------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTGCTGCTGCAGCGACTTGAGCGGGAGTTGCAGTTGCAACAGC---------------------------------AACAACATCAGCAGCAGCAGCAG---------------------CAACAACAACAGCAGCAGCA------ACAATTACTA------CAACAG--------------------------------------------------------------------------------------------------------------------------------------------CAACAGGAGCAACACCTGCAACAACAG--C---------------------------AACTC--CTATA------CG------CCCATCGGCAGAGCTACAC-----------------------GCCC-----ATC--AGGCAGCGTTGGCTGACT-------------------------
droBip1	scf7180000396431:1489241-1489439 +		AGCAG-ATAAGTGTCGTCAAGTTG-------AATGACTC-----------------------CGAGGCAATGATTTACC---AGCAACATCAGGAGAAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAACATCAGCAACATCA------TGAGGAAGAT------CAACAGCATCAGCAACAACA-----------------------------------------------------------------------------------------------------ACATGATAGTGCCGTTCAA------C------------------------A----------------------------------------------------------GCAACATTTATGCTTTTTGGTATCCAGCGGA--CAATATTCGCCC-----TGTG-AGACAC---TGGA------------------------------
droKik1	scf7180000302621:99273-99484 +		GCTGC-AGCAGCAGCATCACAGGG-------AACAGCAG-----------------------CAGC---GGG-AAAGAG------------------AG------------C-------------GGGA------GCAG------C----------------------A---------------------------------------------------------------------------------------------------TCAGCAGCAGC---------------------------------AGCAACACCAGCAGCAGCATCAGCAACACCACCAACAGCATCAG------------------------CAGCAGCAACAC------CAAC----------------------------------------------------------------------------------A---------------GCAG----------------------------------------CA---------GCATCAGCAACAGCT-TGCAGCACAA----------------------------------------------AGCAGAAACCAGGCT------GCTTCAGCAGT--AAGCAGCAGCTT-----GGCG-GGTGTG---GGTA------------------------------
droFic1	scf7180000454126:643339-643567 -		AGCTG-ATCGACTTGGCCAGGTTTAAGGGGCCACC---T-----------------------CAATGCAGTGGC--------------AACAACAATAGTGGC----------------------AG---------CAG---CAGCA---------CTAGCAGC----------------------------------------------------------------------------------------------------------------AGT---------------------------------AGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTAG------------------------CAGCAGCAACAG------CA------GCAGCAGCAGTAGC---------------------------------------------A----------------GTA---------------GTAAAAGTAGTTACAG----------------------------T------------------------A----------------------------------------------------------GCAGTAGTTACGTTCCTGTGCCTGCGATCGG--CAGCCT-----G-----AGTA-GTATTA---GTAA------------------------------
droEle1	scf7180000490967:924386-924618 -		ACCAG-AATGTCACGGTCACGGCG-------CACCACAGCCA-------------ACAGCAGCAAC---AGC-AATTGC------------------AGC-------------------------AGCA------GCAG---CAGCA---------CCACCAAC----------------------------------------------------------------------------------------------------------------ACC------------------------------------ATCACCATCACCACCAGCAACAGCACCACCAGCAGCAGCAG------------------------CAACAGCAGCAC------CTACTGTCCAGTG-----------------------------TG----------------------------------ACGATC-AC---------------GC-------------------CCAACTATCATCCGGCGCAGCAGCAGCAGCAGCAACATCAGCAGCAACAA--C---------------------------AC-----------------------------------CACCAACCGATG----------------------------------CGCAG---CCAA------------------------------
droRho1	scf7180000779467:610602-610830 +		AGAGA-GGAAACGCAGCCATCAAC----AGTCACG---T-----------------------CATCGAAGGGAC-TGAC---AGCAA--------------------------------------------------------------------------------CAGTA---------------------------------------------------------------------------------------------------------G---------CAGCAGCAACAGCAGGAACGTCAGCAACAACACCAGTAGCAACGGCAGCAACATCAACCGTGACAGCG---------------------------ACAACAGGTG------CAACTGTGGAGGT-----------------------------GA-----------------------------------CAACAAGC---------------GTAAAAGTAGCTGAAG-------------------ACACCGCAGCAACATCAGCGACAACAG------------------------------------------------------------------------------------------CAGCA-A--CAGTAATTGC-C-----AGTG-AAGCGC-------------------------------------
droBia1	scf7180000302113:1788174-1788379 -		AGCAG--CAATCGCAGCCAC-----------AACAACAGCAA-----------TTGCAGCAACAAC---AGGCAATTAC-------------------------------------------AGCTGCGACAACGGCA---------------GC------AAC----------------------------------------------------------------------------------------------ATGC-----------------------------------------------------AATGCCA-CAGCAGCAGCAACAACATCCTCGGCAGCAGCAG------------------------CAACAGCCACAT------CAGCAGCAGCAGC-----------------------------AA-------------------------CA---CCAA-CAACATCC---------------ACAAACAACGACA---------------------------------------------ACAACAGCG----------------------------------------------------------------ATAACTTTGCAA--TGGACGCCA----------------------------------G---TGAA------------------------------
droTak1	scf7180000415287:284002-284234 -		GT-AG-AGGAACGCCATCACATTG-------GATTACGCGCAGTTTTACTTTAGAGCGGTGCCAAT-----TAGTGGCC---AACAGCAGCAACAACAGCAGC----------------------AG---------CAA---CAGCA---------CCAGCAAC-------TCGTGCAGCAGCAATTGCTAGCCCAGCAGCAGCAGCAACTGCAGATCCAGCAGCTGCAGCAACAATTGCTGCTGCAGCGACTCGAGCGCGAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGA----GAGTT---ACTCGTGCCTGCGGCAACGT---TGGC------------------------------
droEug1	scf7180000409538:185122-185336 +		AACAA--CAACCATTCGCGT--CG---------CAGCAGCGC-----------TAGCAACAACAAT---AAATAGCAAA-----AAC----------TGA---GCAGCGTTCGGCAAAGC---------------GCAGCAACAGCAACAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------AACAC------------------------------------TAAAACTAACAGCAGCAGCA------AAACCAATTG------CAACTGCAGCAGTAACAACAACAACAAC--------------------------------------------------------------------------------------------------------------------AGC--------------------------------------------------------AACAT--CC--------------------------------AAACGGCGACAAGCGGT--CAACAGCAGCAA-----CAGC-AAACGC---TGCA-GTCG-------------------------
dm3	chr3L:5835669-5835858 -		GCAGG-ACAAGCGCGATCACCGCC-------GCCAGCGG-----------------------CAGG---A-----------------------------------------------------------------------------------TC------AG----CA------------------------------------------------------------------------------------------------------GAAGGAGC------------------------------------------------------------------------------------------------------------------------------AGCGCCAGCAGCAGCAGCAGCGTCAGCACAAGAGCGGCAACAAGCACCAGCAGCAGCAGCAGCAGCG-----CAGGAAGC---------------ACCAGCGGAAGCACCA----------------------------------------------------------------------------------------------------------------------------------GCGATACAACCGC--TATTGCTCCGCC-----CGAG-ATCCCG---CCCA--------------------GTTGGCCTTT
droSim2	2r:12289749-12289977 +		CGCCC-ACTAGCATTGTGAACAAC-------AACAACGGCGT-----------GTGCGTTGTCAA-----------------------------------------------------CT---------------GCAGCTACACCCCCAGCAGCAGCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGCAG---------------------------------------------------CAG---------CAGCAGCTGCA---------------TCAGCAACAC--------------------------------------------------------------------------------------------C---------------ACCAACAGCAA---------------------------------------------CATCAGCAACAATAA--C---------------------------AGCGTGGTTGAAATCAATAAGTGTGTGCCAGCAGCCAAAGTGTTTAGTG------------------------------CA-AGTGTT---CAAA-----ATCAAAATAGGCTCAATAATAATAG
droSec2	scaffold_3628:2148-2352 +		ACAGC-AGCGGCGCAGTCACCACC-------AGCAGAGG--------------CAGCAGCAGCGAC---GCAGT-CGCC---ACT----------------------------------------GGCAGCA---GCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCGGCGCAGTC---------------------------------ACCAC------------------------------------CAGCAGCAACAGTAGCAGCG------ACGCAGTCAC--------------------------------------------------------------------------------------------C---------------ACCAGCAGCAACAGCAGCGACGCAGTTGCCACCGGAAGC---AGCA--------------------------------------------------------GCAT--C---------------------------GGCGC-----GGTCACCACCA-G--CAGCAGCAG----------CC-ACGCAG---TCAC------------------------------
droYak3	3L:6409373-6409591 -		GCCAG-AGCAGCAGCAGCAACTGC-------AGCAGCAG-----------------------CAAC---A--------------------------------------------------------------------------GCA---------GCAGCAAC----------------------------------------------------------------------------------------------------------------AGC---AACTGCAGCAG------------------------------CAGCAGCAACTGCAGCAGCAGCAACAGCAGCAG------------------------CAACAGCAGCCG------CA------ACAGCAGCAACTGC---------------------------------------------AGCA---GCAA-CAGCAGTCAATGCAAAAAGTTCCAAATAC---------T--------------TTAAT------------------------------------------------------------------------------------CA------ATAGTCAAATATATAATTTATTATACAATGG--------CATGCCC-----AGCG-AGGCGG---CGAG------------------------------
droEre2	scaffold_4770:5567522-5567743 -		CAGCG-AT-GGCCTGGCCAACGGC-------AA------TCA----------------G---CAGC---ATCGCAT--G------------------AT------------C-GTGAGTTGCGGTGCAGGCGCCGGCA---------------AC------AG----CA------------------------------------------------------------------------------------------------------GTAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------CAACAGTAACAGTAGCAGCG------ATATCA-----------AGCA---GCAGCAGCAGC-----------------------A------------------------------------------------------------------------------ACGTATT---------------------------------------------ATCATTGCATCCCCGCAACATGCCAGCGGTAGTAC--TTACA-------------------------AGCAACA-TGTTGCCAGCGGCAACAATAGTCACGC-----AGC---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGCAG-ATAAGCGTGGTCAAATTG-------AACGACAGTCA-----------GAGCGATAGCGAG---ATGGTGTTAC-------------------------------------------GGCTCAAGCAAGAGCA---------------AC------ACG--A--------------------------------------------------------------------------------------------------------GCAACATCAGC---------------------------------AACAC------------------------------------CAGCAGCAGCAGTTGCAGTTACACTTACCGCTACAG------CAGCAGCAGCAGC-----------------------------A-----------------------------------------ATT---------------ACAAACGGGATCACAA--------------------------------------------------------------------------------------------------ACTATCACAACGCCGTATCAGCTATGCTATTTGGTCTCCAGCGGA--CAGTATTCGCCC-----TGCG-AGACTT---TGGA------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGCAGTTACACTT........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................C---------------------------------AACAC------------------------------------CAGCAGCAGCAGT.....................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0

droVir3

AACAG-ATAAGCGTGGTAAAACTG-------AACGACAGCCA-----------AAGCGACAGCGAC---ATGGTATTAC-------------------------------------------ATTTAAAGCAACAGCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCAGGAG------------------------------------------------------GAGCAACA------G---------CAACAGCAGCAATT------------GCTACAATTG------CAGCTGCAGCAGC-----------------------------AA-----------------------------------CAGCATTC---------------GCAAACGGAGGCACAG--------------------------------------------------------------------------------------------------CCACCCACAGCGCCCTATCAGCTATGCTATTTGGTGTCCAGTGGC--CAGTACTCGCCC-----TGCG-AGACTC---TAGA------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................TAAAGCAACAGCA---------------GC------AGC--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCAACA------G---------CAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAGCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCAGGAG------------------------------------------------------GA........................................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAACA------G---------CAACAGCAGCAAT.....................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCAGGAG------------------------------------------------------GA........................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCAGC-----------------------------AA-----------------------------------CAGC.....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................G------------------------------------------------------GAGCAACA------G---------CAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AACAG-ATAAGCGTGGTAAAGCTG-------AATGACAGTCG-----------AAGCGGCAGCGAT---ATGATATTAC-------------------------------------------AACTAAAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAACAACAACAAGAG----------------------------------------------------------------------------------------------------------CAGCATTC---------------ACAAGCTGTGTCACCG--------------------------------------------------------------------------------------------------TCTGTTACGGCGCCTTATCAGCTTTGCTATTTGGTGTCCAGTGGC--CAATACTCGCCC-----TGCG-AGACTC---TGGA------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AACAA-ATCAGTGTTGTTAAATTG-------AATGACAG-----------------------CAAC---ATGGTATTGCAACAGCAACATCAGCATCAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAGCAACAGCAACAGCA------TGA--AATTGAAACTACACCCACATCGGTATCACC--------------------------------------------------------------------------------------------------A---A-----------CGTC------------------------------------------------------------------------------------TA------ACTATCAATTATGCTATCTAGTATCCAGTGGT--CAGTATTCACCT-----TGCG-AGACTC---TGGA------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAGCAACAGCAACA.................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
.......................................................................................CATCAGCATCAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------C.................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	1
.............................................................................................CATCAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAGCAAC........................................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	1	0
.............................................................................................CATCAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0

dp5

AGCAG-ATCAGTGTGGTCAAGCTG-------AACGACAG-----------------------CGAG---ATGGTTCTTC---AGCAGC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAG---------------------CAGGAGGTAGAG------GAGGTGCAGAAGC-----------------------------AA-----------------------------------CAACAATCTAACAAACAATCTACGCAATC---------G--------------TCGCC------------------------------------------------------------------------------------CA------GCTATCAGCTGTGCTATTTGGTGTCCAGCGGA--CAGTACTCGCCC-----TGCG-AGACCC---TCGA------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AGCAG-ATCAGTGTGGTCAAGCTG-------AACGACAG-----------------------CGAG---ATGGTTCTTC---AGCAGC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------CAG---------------------CAGGAGGTAGAG------GAGGTGCAGAAGC-----------------------------AACAACAGACA--------------------------------------CAAAAATCTACGCAATC---------G--------------TCGCC------------------------------------------------------------------------------------CA------GCTATCAGCTGTGCTATTTGGTGTCCAGCGGA--CAGTACTCGCCC-----TGCG-AGACCC---TCGA------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTGTCCAGCGGA--CAGTACTCGCC......................................................	28	1	1.00	1	1	0	0	0	0	0

droAna3

AGCAGCAGCAGCAACTGCAAATCC-------AGCAGCTG-----------------------CAGC---A------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTGCTGCTGCAGCGACTTGAGCGGGAGTTGCAGTTGCAACAGC---------------------------------AACAACATCAGCAGCAGCAGCAG---------------------CAACAACAACAGCAGCAGCA------ACAATTACTA------CAACAG--------------------------------------------------------------------------------------------------------------------------------------------CAACAGGAGCAACACCTGCAACAACAG--C---------------------------AACTC--CTATA------CG------CCCATCGGCAGAGCTACAC-----------------------GCCC-----ATC--AGGCAGCGTTGGCTGACT-------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................ACAACATCAGCAGCAGCAGCAG---------------------C.................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................CAACAGC---------------------------------AACAACATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAG---------------------CAACAAC...........................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AACAACATCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCAG---------------------CAACAACAACAGCAGCAGCA------AC......................................................................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---------------------CAACAACAA.........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG---------------------CAACAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAG---------------------CAACAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCAG---------------------CAACAACAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CAG---------------------CAACAACAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCAGCAG---------------------CAACAACAAC........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---------------------CAACAACAAC........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

AGCAG-ATAAGTGTCGTCAAGTTG-------AATGACTC-----------------------CGAGGCAATGATTTACC---AGCAACATCAGGAGAAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------CAACAACATCAGCAACATCA------TGAGGAAGAT------CAACAGCATCAGCAACAACA-----------------------------------------------------------------------------------------------------ACATGATAGTGCCGTTCAA------C------------------------A----------------------------------------------------------GCAACATTTATGCTTTTTGGTATCCAGCGGA--CAATATTCGCCC-----TGTG-AGACAC---TGGA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTGC-AGCAGCAGCATCACAGGG-------AACAGCAG-----------------------CAGC---GGG-AAAGAG------------------AG------------C-------------GGGA------GCAG------C----------------------A---------------------------------------------------------------------------------------------------TCAGCAGCAGC---------------------------------AGCAACACCAGCAGCAGCATCAGCAACACCACCAACAGCATCAG------------------------CAGCAGCAACAC------CAAC----------------------------------------------------------------------------------A---------------GCAG----------------------------------------CA---------GCATCAGCAACAGCT-TGCAGCACAA----------------------------------------------AGCAGAAACCAGGCT------GCTTCAGCAGT--AAGCAGCAGCTT-----GGCG-GGTGTG---GGTA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCTG-ATCGACTTGGCCAGGTTTAAGGGGCCACC---T-----------------------CAATGCAGTGGC--------------AACAACAATAGTGGC----------------------AG---------CAG---CAGCA---------CTAGCAGC----------------------------------------------------------------------------------------------------------------AGT---------------------------------AGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTAG------------------------CAGCAGCAACAG------CA------GCAGCAGCAGTAGC---------------------------------------------A----------------GTA---------------GTAAAAGTAGTTACAG----------------------------T------------------------A----------------------------------------------------------GCAGTAGTTACGTTCCTGTGCCTGCGATCGG--CAGCCT-----G-----AGTA-GTATTA---GTAA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCAG-AATGTCACGGTCACGGCG-------CACCACAGCCA-------------ACAGCAGCAAC---AGC-AATTGC------------------AGC-------------------------AGCA------GCAG---CAGCA---------CCACCAAC----------------------------------------------------------------------------------------------------------------ACC------------------------------------ATCACCATCACCACCAGCAACAGCACCACCAGCAGCAGCAG------------------------CAACAGCAGCAC------CTACTGTCCAGTG-----------------------------TG----------------------------------ACGATC-AC---------------GC-------------------CCAACTATCATCCGGCGCAGCAGCAGCAGCAGCAACATCAGCAGCAACAA--C---------------------------AC-----------------------------------CACCAACCGATG----------------------------------CGCAG---CCAA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAGA-GGAAACGCAGCCATCAAC----AGTCACG---T-----------------------CATCGAAGGGAC-TGAC---AGCAA--------------------------------------------------------------------------------CAGTA---------------------------------------------------------------------------------------------------------G---------CAGCAGCAACAGCAGGAACGTCAGCAACAACACCAGTAGCAACGGCAGCAACATCAACCGTGACAGCG---------------------------ACAACAGGTG------CAACTGTGGAGGT-----------------------------GA-----------------------------------CAACAAGC---------------GTAAAAGTAGCTGAAG-------------------ACACCGCAGCAACATCAGCGACAACAG------------------------------------------------------------------------------------------CAGCA-A--CAGTAATTGC-C-----AGTG-AAGCGC-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAG--CAATCGCAGCCAC-----------AACAACAGCAA-----------TTGCAGCAACAAC---AGGCAATTAC-------------------------------------------AGCTGCGACAACGGCA---------------GC------AAC----------------------------------------------------------------------------------------------ATGC-----------------------------------------------------AATGCCA-CAGCAGCAGCAACAACATCCTCGGCAGCAGCAG------------------------CAACAGCCACAT------CAGCAGCAGCAGC-----------------------------AA-------------------------CA---CCAA-CAACATCC---------------ACAAACAACGACA---------------------------------------------ACAACAGCG----------------------------------------------------------------ATAACTTTGCAA--TGGACGCCA----------------------------------G---TGAA------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GT-AG-AGGAACGCCATCACATTG-------GATTACGCGCAGTTTTACTTTAGAGCGGTGCCAAT-----TAGTGGCC---AACAGCAGCAACAACAGCAGC----------------------AG---------CAA---CAGCA---------CCAGCAAC-------TCGTGCAGCAGCAATTGCTAGCCCAGCAGCAGCAGCAACTGCAGATCCAGCAGCTGCAGCAACAATTGCTGCTGCAGCGACTCGAGCGCGAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGA----GAGTT---ACTCGTGCCTGCGGCAACGT---TGGC------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AACAA--CAACCATTCGCGT--CG---------CAGCAGCGC-----------TAGCAACAACAAT---AAATAGCAAA-----AAC----------TGA---GCAGCGTTCGGCAAAGC---------------GCAGCAACAGCAACAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------AACAC------------------------------------TAAAACTAACAGCAGCAGCA------AAACCAATTG------CAACTGCAGCAGTAACAACAACAACAAC--------------------------------------------------------------------------------------------------------------------AGC--------------------------------------------------------AACAT--CC--------------------------------AAACGGCGACAAGCGGT--CAACAGCAGCAA-----CAGC-AAACGC---TGCA-GTCG-------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCAGG-ACAAGCGCGATCACCGCC-------GCCAGCGG-----------------------CAGG---A-----------------------------------------------------------------------------------TC------AG----CA------------------------------------------------------------------------------------------------------GAAGGAGC------------------------------------------------------------------------------------------------------------------------------AGCGCCAGCAGCAGCAGCAGCGTCAGCACAAGAGCGGCAACAAGCACCAGCAGCAGCAGCAGCAGCG-----CAGGAAGC---------------ACCAGCGGAAGCACCA----------------------------------------------------------------------------------------------------------------------------------GCGATACAACCGC--TATTGCTCCGCC-----CGAG-ATCCCG---CCCA--------------------GTTGGCCTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCG-----CAGGAAGC---------------AC................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCAGCAGCGTCAG.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCGTCAGCACAAGAGCG.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGC--TATTGCTCCGCC-----CGAG-ATCCCG---..................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCTCCGCC-----CGAG-ATCCC......................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCACCAGCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCG-----C........................................................................................................................................................................................................................................................	21	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCGTCAGC......................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGC------------------------------------------------------------------------------------------------------------------------------AGCGCCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................	18	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCG-----C........................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGCCC-ACTAGCATTGTGAACAAC-------AACAACGGCGT-----------GTGCGTTGTCAA-----------------------------------------------------CT---------------GCAGCTACACCCCCAGCAGCAGCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGCAG---------------------------------------------------CAG---------CAGCAGCTGCA---------------TCAGCAACAC--------------------------------------------------------------------------------------------C---------------ACCAACAGCAA---------------------------------------------CATCAGCAACAATAA--C---------------------------AGCGTGGTTGAAATCAATAAGTGTGTGCCAGCAGCCAAAGTGTTTAGTG------------------------------CA-AGTGTT---CAAA-----ATCAAAATAGGCTCAATAATAATAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................AGCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................................AGCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................................................A---------------------------------------------------------------------------------------------------------A---------CAGCAG---------------------------------------------------CAG---------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................AGCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGCAG---------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................GCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AA-CAACA---------------------------------------------------------------------------------------------------------A---------CAGCAG---------------------------------------------------CAG---------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCAGCAACAA-CAACA---------------------------------------------------------------------------------------------------------A---------CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACAGC-AGCGGCGCAGTCACCACC-------AGCAGAGG--------------CAGCAGCAGCGAC---GCAGT-CGCC---ACT----------------------------------------GGCAGCA---GCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCGGCGCAGTC---------------------------------ACCAC------------------------------------CAGCAGCAACAGTAGCAGCG------ACGCAGTCAC--------------------------------------------------------------------------------------------C---------------ACCAGCAGCAACAGCAGCGACGCAGTTGCCACCGGAAGC---AGCA--------------------------------------------------------GCAT--C---------------------------GGCGC-----GGTCACCACCA-G--CAGCAGCAG----------CC-ACGCAG---TCAC------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................GCAGCA---GCA---------------GC------AGC--A--------------------------------------------------------------------------------------------------------GCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0

droYak3

GCCAG-AGCAGCAGCAGCAACTGC-------AGCAGCAG-----------------------CAAC---A--------------------------------------------------------------------------GCA---------GCAGCAAC----------------------------------------------------------------------------------------------------------------AGC---AACTGCAGCAG------------------------------CAGCAGCAACTGCAGCAGCAGCAACAGCAGCAG------------------------CAACAGCAGCCG------CA------ACAGCAGCAACTGC---------------------------------------------AGCA---GCAA-CAGCAGTCAATGCAAAAAGTTCCAAATAC---------T--------------TTAAT------------------------------------------------------------------------------------CA------ATAGTCAAATATATAATTTATTATACAATGG--------CATGCCC-----AGCG-AGGCGG---CGAG------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..CAG-AGCAGCAGCAGCAACTGC-------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACTGC---------------------------------------------AGCA---GCAA-CAGC.....................................................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AG------------------------CAACAGCAGCCG------CA------AC..............................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG------------------------CAACAGCAGC................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAG------------------------CAACA.....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AGCAG------------------------------CAGCAGCAACTGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........CAGCAGCAGCAACTGC-------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................AG-----------------------CAAC---A--------------------------------------------------------------------------GCA---------GCAGCAAC----------------------------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......AGCAGCAGCAGCAACTGC-------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAG------------------------------CAGCAGCAACTGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAGCG-AT-GGCCTGGCCAACGGC-------AA------TCA----------------G---CAGC---ATCGCAT--G------------------AT------------C-GTGAGTTGCGGTGCAGGCGCCGGCA---------------AC------AG----CA------------------------------------------------------------------------------------------------------GTAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------CAACAGTAACAGTAGCAGCG------ATATCA-----------AGCA---GCAGCAGCAGC-----------------------A------------------------------------------------------------------------------ACGTATT---------------------------------------------ATCATTGCATCCCCGCAACATGCCAGCGGTAGTAC--TTACA-------------------------AGCAACA-TGTTGCCAGCGGCAACAATAGTCACGC-----AGC---------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................TCA----------------G---CAGC---ATCGCAT--G------------------AT------------C-GTGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	11
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC-----------------------A------------------------------------------------------------------------------ACGTATT---------------------------------------------ATCA.......................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATGCCAGCGGTAGTA.........................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................................A----------------G---CAGC---ATCGCAT--G------------------AT------------C-GTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TAACAGTAGCAGCG------ATATCA-----------AGCA---GCA.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAC--TTACA-------------------------AGCAACA-TGTTGCC.........................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATCCCCGCAACATGCCAGCGG..............................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.......................................................................CGCAT--G------------------AT------------C-GTGAGTTGCGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................T--G------------------AT------------C-GTGAGTTGCGGTGCAGGCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCG------ATATCA-----------AGCA---GCAGCA..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
.....................GGC-------AA------TCA----------------G---CAGC---ATCGCAT--G------------------AT------------C-GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
......................................................................TCGCAT--G------------------AT------------C-GTGAGTTGCGGTGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------------------------AGCAACA-TGTTGCCAGCGGC...................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................GTAGCAGCG------ATATCA-----------AGCA---................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
................................................................GC---ATCGCAT--G------------------AT------------C-GTGAGTTGCGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................GTAGCAGCAGCAACAGCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCAG---------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dmo_849

scaffold_6482:1485844-1485978 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.8	-24.1	-23.9