ID:

dmo_847

 Coordinate:

scaffold_6482:1461828-1461978 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_14800:2]; CDS [Dmoj\GI14341-cds]; intron [Dmoj\GI14341-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGATACTTTTGATTGTGATTTGACAATGCCAACAATTGCTGAACTGATTGGACGCCACTCCTCTAGGTACGCGGACAGGCTTTAAGTGCACCCAAATCCACTGGCAACTGACCTGGCACACAACAATAGACGAAGGCTTAAAAGGCTTCACCCCTTGGACCGCAGATCTCGATAAATAATTGTTAATTATATGACTTCTAGCCCATAATTTAACGGACTCGCCGCCGAGGAAGTTGCGTGCGCGTGACGAG
**********************************************************....((((((...(((....(((...((((..........)))))))..)))))))))....*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V049
head
 V056
head
..........................................................TCCTCTAGGTACGCGGACAGGC........................................................................................................................................................................... 22 0 1 10.00 10 8 0 2 0 0
..........................................................TCCTCTAGGTACGCGGACAGGCTT......................................................................................................................................................................... 24 0 1 6.00 6 6 0 0 0 0
..........................................................TCCTCTAGGTACGCGGACAGG............................................................................................................................................................................ 21 0 1 2.00 2 0 0 1 1 0
..........................................................TCCTCTAGGTACGCGGACAGGCT.......................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0
......................ACAATGCCAACAATTGCTGAACTGA............................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..........................................................TCATCTAGGTACGCGGACAGGCTT......................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
................................................................................................TCCACTGGCAACTGACCTGGCACA................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................ATGACTTCTAGCCCATAATTTAA...................................... 23 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................ATTTAACGGACTCGCCGCCGAGGAAG.................. 26 0 1 1.00 1 1 0 0 0 0
................................CAATTGCTGAACTGATTGGACGCC................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................GGACCGCAGATCTCGATAAATATT....................................................................... 24 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................CTCGATAAATAATTGTTAATTATATGAC........................................................ 28 0 1 1.00 1 1 0 0 0 0
....................TGACAATGCCAACAATTGCTGAACTGAT........................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................TGGCACACAACAATAGACGAAGGC.................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
........................................GAACTGATTGGACGCCAC................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
..................................................................................TAAGTGCACCCAAATCCACTGGCAACC.............................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................ATGACTTCCAGCCCATAATTTAACGGAC................................. 28 1 1 1.00 1 0 1 0 0 0
...........................................................CCTCTAGGTACACGGACAGGC........................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................TGGCACACAACAATAGACGAAGGCT................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.........................................................................................ACCCAAATCCACTGGCAACTGACCTGG....................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................CACAACAATAGACGAAGGCTTAAAA............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................TTAACGGACTCGCCGCCGAGGAAGT................. 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................TGGCACACAACAATAGACGAAGGCTT................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
..........................................................TCCTCTAGGTACGCGGACAG............................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..........................................................TCCTCTAGGGACGCGGACAGGCT.......................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.............................................................TCTAGGTACGCGGACAGGCTTTAAG..................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................ATGACTTCTAGCCCATAATTTAACGGA.................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TGACTTCTAGCCCATAATTTA....................................... 21 0 1 1.00 1 1 0 0 0 0
..........................................................TCCTCTAGGTACGCGGACAGGCTTT........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................CCACTGGCAACTGACCTGG....................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................AACAATAGACGAAGGCTTAAAAGGCT........................................................................................................ 26 0 2 0.50 1 0 0 0 0 1
............................................................................................................................AATAGACGAAGGCTTAAAAGGCTTCACCC.................................................................................................. 29 0 2 0.50 1 0 1 0 0 0
................................CAATTGCTGAACTGATTGGACG..................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
............................................................................................................................AATAGACGAAGGCTTAAAAGGCT........................................................................................................ 23 0 2 0.50 1 0 1 0 0 0
....................................................................................................................................AGGGCTTAAAAGGCTTCACCC.................................................................................................. 21 1 3 0.33 1 0 1 0 0 0
....................................................................................................................................................................................................................ACGGACTCGCCGCCGAGGAAG.................. 21 0 5 0.20 1 1 0 0 0 0
.................................AATTGTGGAACTGCTTGGACG..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
..........................................................TCCTCGAGGTACGCGGACAGGCTT......................................................................................................................................................................... 24 1 12 0.17 2 1 1 0 0 0
...............................................................................................................................................................................................................CTCTAACGGACTCGCCGCC......................... 19 2 8 0.13 1 0 1 0 0 0
..........................................................TCCTCGAGGTACGCGGACAGGCTTG........................................................................................................................................................................ 25 2 12 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................GTCCTAAATTTAACGGACT................................ 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACTATGAAAACTAACACTAAACTGTTACGGTTGTTAACGACTTGACTAACCTGCGGTGAGGAGATCCATGCGCCTGTCCGAAATTCACGTGGGTTTAGGTGACCGTTGACTGGACCGTGTGTTGTTATCTGCTTCCGAATTTTCCGAAGTGGGGAACCTGGCGTCTAGAGCTATTTATTAACAATTAATATACTGAAGATCGGGTATTAAATTGCCTGAGCGGCGGCTCCTTCAACGCACGCGCACTGCTC
***********************************************************************************************************************************....((((((...(((....(((...((((..........)))))))..)))))))))....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V049
head
 V056
head
..........................................TGACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 26 0 1 49.00 49 29 19 1 0 0 0
...........................................GACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 25 0 1 33.00 33 26 7 0 0 0 0
..............................................................................................................................................................................TTATTAACAATTAATATACTGAAGAT................................................... 26 0 1 28.00 28 12 16 0 0 0 0
........................................................................................................GTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 24 0 1 25.00 25 24 0 1 0 0 0
......................................................................................................................................................GGGGAACCTGGCGTCTAGAGCTATTT........................................................................... 26 0 1 9.00 9 7 2 0 0 0 0
.............................................CTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 23 0 1 8.00 8 1 5 1 1 0 0
...............................................................................................................................................................................TATTAACAATTAATATACTGAAGAT................................................... 25 0 1 8.00 8 2 6 0 0 0 0
.......................................................................................................CGTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 25 0 1 8.00 8 6 1 1 0 0 0
.............ACACTAAACTGTTACGGTTGTTAACGACT................................................................................................................................................................................................................. 29 0 1 7.00 7 7 0 0 0 0 0
..........................................CGACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 26 1 1 5.00 5 1 4 0 0 0 0
.........................................................................................................TTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 23 0 1 5.00 5 3 2 0 0 0 0
.....................................................................................................................TGTGTTGTTATCTGCTTCCGAATTT............................................................................................................. 25 0 1 4.00 4 3 0 0 1 0 0
....................................................................................................GACCGTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 28 0 1 4.00 4 3 0 0 1 0 0
........................................................................................................................................................GGAACCTGGCGTCTAGAGCTATTT........................................................................... 24 0 1 3.00 3 2 1 0 0 0 0
.........................................TTGACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 27 0 1 3.00 3 1 1 0 1 0 0
.......................................................................................................................................................GGGAACCTGGCGTCTAGAGCTATTT........................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................GTTGACTGGACCGTGTGTTGTTA............................................................................................................................ 23 0 1 3.00 3 3 0 0 0 0 0
......................................................................................................CCGTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0
..........................................................................................................TGACTGGACCGTGTGTTGTTAT........................................................................................................................... 22 0 1 3.00 3 1 2 0 0 0 0
..............................................................................................................................................................................CTATTAACAATTAATATACTGAAGAT................................................... 26 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................CTGGACCGTGTGTTGTTATCTGCTT..................................................................................................................... 25 0 1 3.00 3 0 3 0 0 0 0
....................................................................................................................................................................CTAGAGCTATTTATTAACAATTAAT.............................................................. 25 0 1 3.00 3 1 2 0 0 0 0
............................................ACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 24 0 1 3.00 3 1 1 0 1 0 0
................................................................................................................................................CGAAGTGGGGAACCTGGCGTCTAGAGCT............................................................................... 28 0 1 3.00 3 0 3 0 0 0 0
.............................................................................................................................................................................TTTATTAACAATTAATATACTGAAGAT................................................... 27 0 1 3.00 3 3 0 0 0 0 0
...........................................GACTAACCTGCGGTGAGGAGATCC........................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
.........................................................................CTGTCCGAAATTCACGTGGGTTTAGGT....................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................GGGGAACCTGGCGTCTAGAGCTAT............................................................................. 24 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................CACGTGGGTTTAGGTGACCGTTGACT............................................................................................................................................ 26 0 1 2.00 2 1 1 0 0 0 0
......................................................................................................................GTGTTGTTATCTGCTTCCGAATTTT............................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................GGGGAACCTGGCGTCTAGAGCTA.............................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................GGGAACCTGGCGTCTAGAGCTAT............................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................ATACTGAAGATCGGGTATTAAATTGCCT.................................. 28 0 1 2.00 2 1 1 0 0 0 0
..........................................AAACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 26 2 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................GGCGTCTAGAGCTATTTATTAACAAT.................................................................. 26 0 1 2.00 2 0 2 0 0 0 0
...............................................................................................................GGACCGTGTGTTGTTATCTGCTT..................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................GGCTCCTTCAACGCACGCGCACTGCT. 26 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................GGGGAACCTGGCGTCTAGAGCTATT............................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
................CTAAACTGTTACGGTTGTTAACGACT................................................................................................................................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0
..............................................TAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................GAAGTGGGGAACCTGGCGTCTAGAGCT............................................................................... 27 0 1 2.00 2 1 0 0 1 0 0
.....................................................................GCGCCTGTCCGAAATTCACGTGGGTT............................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0
..........CTAACACTAAACTGTTACGGTTGTT........................................................................................................................................................................................................................ 25 0 1 2.00 2 1 1 0 0 0 0
......................................................................................................................GTGTTGTTATCTGCTTCCGAATTT............................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0
........................................CTTGACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0
...................................................................................................................................................AGTGGGGAACCTGGCGTCTAGAGCTATT............................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..........................................TGACTAACCTGCGGTGTGGAGATCGA....................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................CACGTGGGTTTAGGTGACCGTT................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................TGGACCGTGTGTTGTTATCTGCTT..................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CTGGACCGTGTGTTGTTAT........................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................CGAATTTTCCGAAGTGGGGAACCT............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TCCGAATTTTCCGAAGTGGGGAAC.............................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................GGGAACCTGGCGTCTAGAGCTTTTT........................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
...........................................GACTAACCTGCGGTGAGGAGATCCAC...................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..........................................TGACTAACCTGCGGTGAGGAGATCGA....................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..............................................TAACCGGCGGTGAGGAGATCCA....................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................GGGAACCTGGCGTCTAGAGCTATTTA.......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................TTGACTGGACCGTGTGTTGTT............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TGACTGGACCATGTGTTGTTATCTG........................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................................GGCTCCTTCAACGCACGCGCACTG... 24 0 1 1.00 1 1 0 0 0 0 0
.........ACTAACACTAAACTGTTACGGTTGTT........................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...............................TGTTAACGACTTGACTAACCTGCGGT.................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................CTGGACCGTGTGTTGTTATCTG........................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................TTGGGAACCTGGCGTCTAGAGCTATT............................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................TTATTAACAATTAATATACTGAAGA.................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................TATTAACAATTAATATACTGAAGA.................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...............ACTAAACTGTTACGGTTGTTAACGACT................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................TTTCCTAAGTGGGGAACCTGGCGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................ACCTGGCGTCTAGAGCTATTTATT........................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................GGCCTGGACCGTGTGTTGTTATCAG........................................................................................................................ 25 3 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................CCCGAAGTGGGGAACCTGGCGT....................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................ACTGGACCGTGTGTTGTTATCTGCTT..................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GAAATTCACGTGGGTTTAGGTGACCGTT................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..........................................TGACTAACCTGCGGTGAGGAGATCCAC...................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
............................................................................TCCGAAATTCACGTGGGTT............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................CGTGGGTTTAGGTGACCGTTGACT............................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................ACGTGGGTTTAGGTGACCGTTGACT............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................CGGTGAGGAGATCCATGCGCC................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................TGACTAACCTGCGGTGAGGATATCCA....................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................GTGTGTTGTTATCTGCTTCCGAATTT............................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................GTTGACTGGACCGTGTGTTG............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................CGTTGACTGGACCGTGTGTTG............................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................CCGTGTGTTGTTATCTGCTT..................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................GACCGTTGACTGGACCGTGTGTTG............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................GACTCGACCGTGTGTTGTTATCTGCGT..................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................CGGGTATTAAATTGCCTGAGCGGCGGCT....................... 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................TTTCCGAAGTGGGGAACCTGGCGT....................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................................CGACTAACCTGCGGTGAGGATATCCA....................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................TTTCCGAAGTGGGGAACCTGGCGTCT..................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...ATGAAAACTAACACTAAACTGTTACGGT............................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TTAAATTGCCTGAGCGGCGGCTCCT.................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................GAGGAGATCCATGCGCCTGTCCGAAA........................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................GGCCGTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................CTGCTTCCGAATTTTCCGAAGTGGGG................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................TTAACAATTAATATACTGAAGATCGGGT.............................................. 28 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TTCCGAAGTGGGGAACCTGGCGT....................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TGACTGGACCGTGTGTTGTTATCT......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................CCGAAGTGGGGAACCTGGCGTCTA.................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................GGGTTTTGGTGACCGTTGACTGGGC........................................................................................................................................ 25 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................................TGACTGGACCGTGTGTTGTTATCTGCTT..................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................TTCCGAAGTGGGGAACCTGGCGTCT..................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................GGAACCTGGCGTCTAGAGCTATTTC.......................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................AAACTGTTACGGTTGTTAACGACT................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................TGGGGAACCTGGCGTCTAGAGCTATT............................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................GAAGTGGGGAACCTGGCGTCTAGAG................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................................CGACTAACCTGCGGCGAGGAGATCCA....................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................CTAGAGCTATTTATTAACAATTAA............................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................TTATTATCAATTAATATACTGAAGAT................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................GGCGGCTCCTTCAACGCACG.......... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................TGGGGAACCTGGCGTCTAGAGCTATTT........................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................TGACCGTTGACTGGACCGTGTGTTGTTA............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
.....................CTGTTACGGTTGTTAACGACTTGACT............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................ATTAACAATTAATATACTGAAGAT................................................... 24 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................ACTGGACCGTGTGTTGTTA............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................AGAGCTATTTATTAACAAT.................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................TATTAACAATTAATATACTGATGAT................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................TTAAATTGCCTGAGCGGCGGCTCCTT................... 26 0 1 1.00 1 1 0 0 0 0 0
............................................ACTAACCTGCGGTGAGGAGATCC........................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TTGCCTGAGCGGCGGCTCCTT................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................GAACCTGGCGTCTAGAGCTATTTATT........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................AGTGGGGAACCTGGCGTCTAGAGCT............................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............ACACTAAACTGTTACGGTTGTTAACGA................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....GAAAACTAACACTAAACTGTTACGGTT........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................CGTCTAGAGCTATTTATTAACAAT.................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGCGGCTCCTTCAACGCACGCGCACTG... 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................TTTCCGAAGTGGGGAACCTGGCGTCA..................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................GCGGCTCCTTCAACGCACGCGCACTG... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................CTAACCTGCGGTGAGGAGGTCCA....................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................GCCTGTCCGAAATTCACGTGGGTT............................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...........................................GACTAACCTGCGGTGAGGAGATC......................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CTGGACCGTGTGTTGTTATCTGATT..................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................GAACCTGGCGTCTAGAGCTATT............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................GCGTCTAGAGCTATTTATTAACAATT................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
..........................................TGACTAACCTGCGGTGAGGAGATCCAT...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTTGACTGGACCGTGTGTTGTTAT........................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................TGACTAACCTGCGGTGAGGAGATCC........................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................TGCGCCTGTCCGAAATTCACGTGGGTT............................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..........................................TTACTAACCTGCGGTGAGGAGATCCA....................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................TTATTAACAATTAATATACTGATGAT................................................... 26 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GTTGTTATCTGCTTCCGAATTTT............................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................TGTTGTTATCTGCTTCCGAATTTT............................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................CGTTATCTGCTTCCGAATTT............................................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0
..........................................................................................................TGACTGGACCGTGTGTTG............................................................................................................................... 18 0 3 0.33 1 0 1 0 0 0 0
....................................................................................................................................................................................................................TGCCTGAGCGGCGGCTCCTT................... 20 0 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................................................................................................TGCCTGAGCGGCGGCTCCTTC.................. 21 0 5 0.20 1 1 0 0 0 0 0
............................................ATGAACCTGCGGTGAGAAG............................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 1 0 0
............................CGTTGTTAACGACTAGACTAG.......................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 1 0 0
................................................ACCTGCGGTTAGGACTTCC........................................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 1 0 0
............................................AGTAACTTGCGGTGAGAAG............................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1
............................................AGTAACTTGCGGTGAGGGG............................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6482:1461778-1462028 - dmo_847 TGATACTTTTGATTGTGATTTGACAATGCCAACAATTGCTGAACTGATTGGACGCCACTCCTCTAGGTACGCGGACAGGCTTTAAGTGCACCCAAATCCACTGGCAACTGACCTGGCACACAACA---ATAGACGAAGGCTTAAAAGGCTTCACCCCTTGGACCGCAGATCTCGATAAATAATTGTTAATTATATGACTTCTAGCCCATAATTTAACGGACTCGCCGCCGAGGAAGTTGCGTGCGCGTGACGAG
droWil2 scf2_1100000004852:631488-631635 - -----------------------CAATGCCAATGATAGCTGAAATAATAGGCCGACACAGCACGCGCTATAGAGACCGCCTCGAAGCTCATCCGAATCCCTTAGCCAATAATTTGGCCGTCAACACCTCTAGGCGTAGGCTAAAGCGTCTGCATCCTTTGGACAGAAGACC-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGATACTTTTGATTGTGATTTGACAATGCCAACAATTGCTGAACTGATTGGACGCCACTCCTCTAGGTACGCGGACAGGCTTTAAGTGCACCCAAATCCACTGGCAACTGACCTGGCACACAACA---ATAGACGAAGGCTTAAAAGGCTTCACCCCTTGGACCGCAGATCTCGATAAATAATTGTTAATTATATGACTTCTAGCCCATAATTTAACGGACTCGCCGCCGAGGAAGTTGCGTGCGCGTGACGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................TCCTCTAGGTACGCGGACAGGC..............................................................................................................................................................................22110.0010820000
..........................................................TCCTCTAGGTACGCGGACAGGCTT............................................................................................................................................................................2416.006600000
..........................................................TCCTCTAGGTACGCGGACAGG...............................................................................................................................................................................2112.002011000
..........................................................TCCTCTAGGTACGCGGACAGGCT.............................................................................................................................................................................2312.002100010
......................ACAATGCCAACAATTGCTGAACTGA...............................................................................................................................................................................................................2511.001100000
................................................................................................TCCACTGGCAACTGACCTGGCACA......................................................................................................................................2411.001000010
.................................................................................................................................................................................................ATGACTTCTAGCCCATAATTTAA......................................2311.001100000
..................................................................................................................................................................................................................ATTTAACGGACTCGCCGCCGAGGAAG..................2611.001100000
................................CAATTGCTGAACTGATTGGACGCC......................................................................................................................................................................................................2411.001000010
..........................................................................................................................................................................CTCGATAAATAATTGTTAATTATATGAC........................................................2811.001100000
....................TGACAATGCCAACAATTGCTGAACTGAT..............................................................................................................................................................................................................2811.001100000
.................................................................................................................TGGCACACAACA---ATAGACGAAGGC..................................................................................................................2411.001000010
........................................GAACTGATTGGACGCCAC....................................................................................................................................................................................................1811.001000010
..................................................................................TAAGTGCACCCAAATCCACTGGCAACC.................................................................................................................................................2711.001000010
.................................................................................................................TGGCACACAACA---ATAGACGAAGGCT.................................................................................................................2511.001000010
.........................................................................................ACCCAAATCCACTGGCAACTGACCTGG..........................................................................................................................................2711.001100000
......................................................................................................................CACAACA---ATAGACGAAGGCTTAAAA............................................................................................................2511.001100000
....................................................................................................................................................................................................................TTAACGGACTCGCCGCCGAGGAAGT.................2511.001100000
.................................................................................................................TGGCACACAACA---ATAGACGAAGGCTT................................................................................................................2611.001100000
..........................................................TCCTCTAGGTACGCGGACAG................................................................................................................................................................................2011.001100000
.............................................................TCTAGGTACGCGGACAGGCTTTAAG........................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................ATGACTTCTAGCCCATAATTTAACGGA..................................2711.001100000
..................................................................................................................................................................................................TGACTTCTAGCCCATAATTTA.......................................2111.001100000
..........................................................TCCTCTAGGTACGCGGACAGGCTTT...........................................................................................................................................................................2511.001100000
.................................................................................................CCACTGGCAACTGACCTGG..........................................................................................................................................1911.001100000
.........................................................................................................................AACA---ATAGACGAAGGCTTAAAAGGCT........................................................................................................2620.501000100
............................................................................................................................A---ATAGACGAAGGCTTAAAAGGCTTCACCC..................................................................................................2920.501000010
................................CAATTGCTGAACTGATTGGACG........................................................................................................................................................................................................2220.501100000
............................................................................................................................A---ATAGACGAAGGCTTAAAAGGCT........................................................................................................2320.501000010
.......................................................................................................................................................................................................................ACGGACTCGCCGCCGAGGAAG..................2150.201100000
droWil2
-----------------------CAATGCCAATGATAGCTGAAATAATAGGCCGACACAGCACGCGCTATAGAGACCGCCTCGAAGCTCATCCGAATCCCTTAGCCAATAATTTGGCCGTCAACACCTCTAGGCGTAGGCTAAAGCGTCTGCATCCTTTGGACAGAAGACC-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................TAGGCTAAAGCGTCTGCATCCTTTGG.............................................................................................2650.20101000
................................................................................TCGAAGCTCATCCGAATCCCTTAGCCA...................................................................................................................................................2760.17100010
............................................................................................................................................TAAAGCGTCTGCATCCTTTGGACA..........................................................................................2470.14100010

Generated: 05/17/2015 at 11:09 PM