ID:

dmo_818

 Coordinate:

scaffold_6482:410372-410522 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-50.9 -50.8 -50.6

Flybase annnotation

exon [dmoj_GLEANR_14868:1]; CDS [Dmoj\GI14381-cds]; intron [Dmoj\GI14381-in]

Repeatable elements

NameClassFamilyStrand
OSVALDO_I-intLTRGypsy-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATAGTCATCTCCGACTCGAAAGACGAGGAGACGACTGAACCCCCGCGGGTAAGTGCTAGTTACACTGGAAAGGTGGACGCACAAATACTGACCGTTCGGGACTGGGCATCGGTCAGGTACACCCCACTGATCCTCGGTTGCTGGCCAGCGACTATGCTGGAGCGGCACGAGGAGCAAGCCGGGTGGACCCACCGGTATCCAGTAGCCGGGCGCGACGAAGCAGGATACGGCTGCCACCGGTGAGGCTGC
*************************************************************...((((.....))))............(((((((((((....)))))...))))))...(((((..((..((((((((((((..(((((......))))))))))).))))))...))..))))).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
 V056
head
.............................................................TTACACTGGAAAGGTGGACGCAC....................................................................................................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGCACAAA.................................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGCACA...................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
...............................GACGACTGAACCCCCGCGGGTAA..................................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0
...............................AACGACTGAGTCCCCGCGGGTAAGTGC................................................................................................................................................................................................. 27 3 1 3.00 3 0 2 1 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGG............................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGG.................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
...............................AACGACTGAGTCCCCGCGGGTAA..................................................................................................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0
.................TCGAAAGACGAGGAGACGACTGAACCCC.............................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TGACCGTTCGGGACTGGGCATCGG......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................AAACGACTGAGTCCCCGCGGGTA...................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TACACCCCACTGATCCTCGGTTGCTGG......................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGCACAAAG................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGCA........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
........................................................GCTAGTTACACTGGAAAGGTGGACG.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................GAGGAAACGACTGAGTCCCCG............................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGACCGTTCGGGACTGGGCATCGGT........................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................TACACCCCACTGATCCTCGGTTGCTG.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGC......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................AACGACTGAGTCCCCGCGGGTA...................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................CGCTAGTTACACTGGAAAGGTGGAC........................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGGACC............................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................TACACTGGAAAGGTGGACGCACA...................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................GACGACTGAACCCCCGCGGGTA...................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.........................................CCCCCGCGGGTAAGTGCTAG.............................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCCAGTAGCCGGGCGCGACGAAGCAGG......................... 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................TGAGCAAGGCGGGTGGACCC........................................................... 20 2 1 1.00 1 0 0 0 0 1 0
.............................................................TTACACTGGAAAGGTGGACGCACAAATAC................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GGCTCGAGGAGCAAGCCGGGTG................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACGCGC....................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................ACACCCCACTGATCCTCGGTT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGGGCATCGGTCAGGTACACCCCACTGA....................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CACCCCACTGATCCTCGGTTG............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................GCTTACACTGGAAAGGTGGACGCACAT..................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................CACGAGGAGCAAGCCGGGTGG............................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.................TCGAAAGACGAGGAGACGACTGAAC................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGGAC............................................................. 25 0 1 1.00 1 0 0 1 0 0 0
.................TCGAAAGACGAGGAGACGACT..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................TGCTGGAGCGGCACGAGGAGCAAGAC..................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.................TCGAAAGACGAGGAGACGAA...................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGT................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................TTACACTGGAAAGGTGGACTT......................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..ATAGTCATCTCCGACTCGAAAGACG................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
...............................GACGACTGAACCACCGCGGGTAA..................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
........................ACGAGGAAACGACTGAGTCCC.............................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0
...............................AACGACTGACTCCCCGCGGGT....................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
......TCATCTCCGACTCCGAAGACGAGG............................................................................................................................................................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................TGCTGGAGCGGCACGAGGAGC.......................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
...............................AACGACTGAGTCCCCGCGGGT....................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0
...........................................................................................................GCATCGGTGAGGCACACCG............................................................................................................................. 19 3 8 0.13 1 0 1 0 0 0 0
............................................................................................................................................................TGCTGGACCGGCACGGCGAG........................................................................... 20 3 8 0.13 1 0 0 1 0 0 0
.....................................................................................................................................................................GGCACGAGGAGCGAGCCGGGTGGAC............................................................. 25 1 11 0.09 1 1 0 0 0 0 0
....................................................................................................................................TCCTCGGTTGCTGGCCAGCGA.................................................................................................. 21 0 12 0.08 1 1 0 0 0 0 0
..................................................................................................................................................................TGGGGCACGAGGAGGAAGCC..................................................................... 20 3 14 0.07 1 0 0 0 0 0 1
...............................................................ATACTGGTAAGGTGGTCG.......................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GTTATCAGTAGAGGCTGAGCTTTCTGCTCCTCTGCTGACTTGGGGGCGCCCATTCACGATCAATGTGACCTTTCCACCTGCGTGTTTATGACTGGCAAGCCCTGACCCGTAGCCAGTCCATGTGGGGTGACTAGGAGCCAACGACCGGTCGCTGATACGACCTCGCCGTGCTCCTCGTTCGGCCCACCTGGGTGGCCATAGGTCATCGGCCCGCGCTGCTTCGTCCTATGCCGACGGTGGCCACTCCGACG
***************************************************************...((((.....))))............(((((((((((....)))))...))))))...(((((..((..((((((((((((..(((((......))))))))))).))))))...))..))))).************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V049
head
..............................................CGCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 25 0 1 27.00 27 13 14 0 0 0
.............................................GCGCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 26 0 1 15.00 15 13 0 2 0 0
............................................GGCGCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 27 0 1 12.00 12 11 0 1 0 0
...............TGAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 26 0 1 10.00 10 8 2 0 0 0
..............................................CGCCCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 26 0 1 9.00 9 2 7 0 0 0
..........................................GGGGCGCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 29 0 1 9.00 9 7 2 0 0 0
................GAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 25 0 1 8.00 8 8 0 0 0 0
...............................................GCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 24 0 1 7.00 7 7 0 0 0 0
......................................................................................................................CATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 24 0 1 5.00 5 0 5 0 0 0
.....................................................................................................................CCATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 25 0 1 5.00 5 2 3 0 0 0
.......................................TTGGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 27 0 1 4.00 4 2 1 1 0 0
..............CTGAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0
....................................................................CCTTTCCACCTGCGTGTTTATGACT.............................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGACC..................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
.......................................................................................................................ATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 23 0 1 3.00 3 0 3 0 0 0
....................................................................................................................TCCATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 26 0 1 3.00 3 1 1 0 1 0
............GGCTGAGGCTTCTGCTCCTTTGCTGAC.................................................................................................................................................................................................................... 27 3 1 3.00 3 3 0 0 0 0
.............GCTGAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 28 0 1 3.00 3 2 0 0 1 0
........................................TGGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 26 0 1 3.00 3 1 2 0 0 0
......................................................................................................................................................GCTGATACGACCTCGCCGTGCTCCT............................................................................ 25 0 2 3.00 6 4 0 2 0 0
............GGCTGAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 29 0 1 3.00 3 3 0 0 0 0
.........................................GGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0
.....................................................................................................................................................CGCTGATACGACCTCGCCGTGCTCCT............................................................................ 26 0 2 2.50 5 2 3 0 0 0
............................................................................CCTGCGTGTTTATGACTGGCAAGCCCT.................................................................................................................................................... 27 0 1 2.00 2 1 0 0 1 0
...........................................GGGCGCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
............................................................................................................GTAGCCAGTCCATGTGGGGTGACT....................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0
................GAGGCTTCTGCTCCTTTGCTGACT................................................................................................................................................................................................................... 24 3 1 2.00 2 2 0 0 0 0
.................................................CCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0 0
...............................................................TGTGACCTTTCCACCTGCGTGTTTAT.................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
............GGCTGAGCTTTCTGCTCCTCTGCTGACT................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
...................................................................................................................CTCCATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 27 1 1 2.00 2 1 1 0 0 0
................................................CCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0
...............TGAGGCTTCTGCTCCTTTGCTGACT................................................................................................................................................................................................................... 25 3 1 2.00 2 1 1 0 0 0
..........................................................................................................................................................................................CCTGGGTGGCCATAGGTCATC............................................ 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................CCTGGGTGGCTATAGGTGA.............................................. 19 2 1 1.00 1 0 0 0 1 0
...........................................................................................................CGTAGCCAGTCCATGTGGGGTGACT....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGACCTG................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..............CTGAGGCTTCTGCTCCTTTGCTGAC.................................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
.........................................GGGGGCGCCCATTCACGATCAATTT......................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
...............................................GCCCATTCACGATCAATGTGACCTTT.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................GTTCGGCCCACCTGGGTGGCC...................................................... 21 0 1 1.00 1 1 0 0 0 0
...............TGAGCTTTCTGCTCCTCTGCTGA..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................CATTCACGATCAATGTGTCCT.................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
...........................................GGGCGCCCATTCACGATCAATGTGAC...................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................AGGCTTCTGCTCCTTTGCTGACT................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
........................................CGGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
................................................................................................................CCAGTCCATGTGGGGTGACTA...................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.........................................................................CCACCTGCGTGTTTATGACTGGCA.......................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
..............................................CGCCCATTCACGATCAATGTGATCGT................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0
...........................................................................................................................GGGGTGACTAGGAGCCAAC............................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
....................................................................................................................TCCATGTGGGGTGACTAGGAGCCATC............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0
...........................................................................................CTGGCAAGCCCTGACCCGTAGCCAGT...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGACCTTT.................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGACCTC................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
....................................................................................................................CCCATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0
..........................................GGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.................AGCTTTCTGCTCCTCTGCTGCCTT.................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 1 0 0
..................................................................................................................................ATAGGAGCCAACGACCGGTCGCTGATAC............................................................................................. 28 1 1 1.00 1 0 1 0 0 0
.................................................................................................................CAGTCCATGTGGGGTGACTAGGAGCCAAC............................................................................................................. 29 0 1 1.00 1 0 1 0 0 0
..........GAGGCTGAGCTTTCTGCTCCTCTGCT....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.............GCTGAGCTTTCTGCTCCTCTGCT....................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.............GCTGAGCTTTCTGCTCCTCTGCTGACT................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGACCGT................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................GTTCGGCCCACCTGGGTGGCCATAGGT................................................ 27 0 1 1.00 1 1 0 0 0 0
............................................GGCGCCCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..............................................CGCCCATTCACGATCAATGTGAC...................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................................ACCTTTCCACCTGCGTGTTTAT.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.........AGAGGCTGAGCTTTCTGCTCCTCTGCT....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................................................................GTTTATGACTGGCAAGCCCTGACCCGT............................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................TCATCGGCCCGCGCTGCTTCGTCCT........................ 25 0 1 1.00 1 1 0 0 0 0
...............TGAGGCTTCTGCTCCTTTGCTGAC.................................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0
..............................................CACCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
.....................TTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0
.......................................TTGGGGGCGCCCATTCCCGATCAATTT......................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0
....................................GACTCAGGGGCGCCCATTCAC.................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0
........................................AAGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................GGCCCGCGCTGCTTCGTCCTA....................... 21 0 1 1.00 1 1 0 0 0 0
..........................................GGGGCGCCCATTCACGATCAATGTGACC..................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................................TGTGGGGTGACTAGGAGCCAA.............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................GTTCGGCCCACCTGGGTGGCCAT.................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................GGGGGCGCCCATTCACGATC.............................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................TGGGGTGACTAGGAGCCAACGACCTGTC..................................................................................................... 28 1 1 1.00 1 0 1 0 0 0
..............................................................ATGTGACCTTTCCACCTGCGTGTTT.................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
...............CGAGCTTTCTGCTCCTCTGCTGACTT.................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0
.................................................CCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
............................................GGCGCCCATTCACGATCAATGTGAACT.................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0
............................................................................................................................GGGTGACTAGGAGCCAAC............................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
.............................................GCGCCCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................CCTGCGTGTTTATGACTGGCAAGACC..................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
...............................................................................................CAAGCCCTGACCCGTAGCCAGTCCA................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
...............................................CCCCATTCACGATCAATGTGACCT.................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.............GCTGAGCTTTCTGCTCCTCTGCTGAC.................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................TCGGCCCACCTGGGTGGCCATAGGTCAT............................................. 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CCGTAGCCAGTCCATGTGGGGTGAC........................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................TCATCGGCCCGCGCTGCTTCGT........................... 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................GGGTGACTAGGAGCCAACGACCGGT...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................GGTCATCGGCCCGCGCTGCTTCGTCCT........................ 27 0 1 1.00 1 1 0 0 0 0
...............TGAGCTTTCTGCTCCTCTGCTGACT................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................CCCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.......................................CTGGGGGCGCCCATTCACGATCAATTT......................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0
...........AGGCTGAGCTTTCTGCTCCTCTGCTGAC.................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
........................................................................TCCACCTGCGTGTTTATGACT.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
......................................CTTGGGGGCGCCCATTCACGATCAATG.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................GGCCATAGGTCATCGGCCCGCGCTGCTT.............................. 28 0 1 1.00 1 1 0 0 0 0
.................................................CCATTCACGATCAATGTGACC..................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
......................................CTTGGGGGCGCCCATTCACGATCAATGT......................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
......................................................................................TATGACTGGCAAGCCCTGACCCGT............................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................CGTGCTCCTCGTTCGGCCCAC................................................................ 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................................CATGTGGGGAGACTAGGAGCTAAC............................................................................................................. 24 2 1 1.00 1 0 1 0 0 0
...............................................GCCCATTCACGATCAATGTGACCTT................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..........................................GGGGCGCCCATTCACGATCAATGTGAC...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.............................................GCGCCCATTCACGAGCAATGTGACCT.................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
................................................CCCATTCACGATCAATGTGACGT.................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..........................................GGGGCGCCCATTCACGAACAATGTGACCT.................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
...............................................................................CCCTGTTTATGACTGGCAAGCCCT.................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.........AGAGGCTGAGGCTTCTGCTCCTT........................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................TCCTCGTCCGGCCCACCTGGG........................................................... 21 1 2 0.50 1 0 1 0 0 0
...............TGAGGCTTCTGCTCCTTTGCTG...................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................CGCTGATACGACCTCGCCGTGCTCC............................................................................. 25 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................CGCTCATACGACCTCGCCGTGCTCCT............................................................................ 26 1 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................GATACGACCTCGCCGTGCTCC............................................................................. 21 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................CTGATACGACCTCGCCGTGCTCCT............................................................................ 24 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................ACTAGGAGCCAACGACCGGTCGCT.................................................................................................. 24 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................CGGCCCTGATACGACCTCGCCGTGCTCCT............................................................................ 29 3 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................AGCTGATACGACCTCGCCGTGCTCCT............................................................................ 26 1 3 0.33 1 1 0 0 0 0
...................................................................................................................................TAGGAGCCAACGACCGGTCGCTGAT............................................................................................... 25 0 11 0.18 2 2 0 0 0 0
..................................................................................................................................CTAGGAGCCAACGACCGGTCGCTGAT............................................................................................... 26 0 11 0.09 1 1 0 0 0 0
..............................................................................................................................................TACCGGTCAATGATACGACC......................................................................................... 20 3 11 0.09 1 1 0 0 0 0
.....................................................................................................................................GGAGCCAACGACCGGTCGCTG................................................................................................. 21 0 12 0.08 1 1 0 0 0 0
.....CAGTAGAGGATGAGCCATC................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0
....................................................................................................................................AGGAGCCAACGACCGGTCGCTG................................................................................................. 22 0 12 0.08 1 0 1 0 0 0
....................................................................................................................................AGGAGCCAACGACCGGTCGCT.................................................................................................. 21 0 12 0.08 1 1 0 0 0 0
.....................................................................................................................................GGCGCCAACGACCGGTCGCTGA................................................................................................ 22 1 16 0.06 1 0 0 1 0 0
.........................................................................................................CCCGTAGCTAGTGCATGG................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0
.........................................................................CCATCTGTCTGTTTATGACT.............................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................GTGGGGGGGCTAGCAGCC................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6482:410322-410572 - dmo_818 CAATAGTCATCTCCGACTCGAAAGACGAGGAGACGACTGAACCCCCGCGGGTAAGTGCTAGTTACACTGGAAAGGTGGACGCACAAATACTGACCGTTCGGGACTGGGCATCGGTCAGGTACACCCCACTGATCCTCGGTTGCTGGCCAGCGACTATGCTGGAGCGGCACGAGGAGCAAGCCGGGTGGACCCACCGGTATCCAGTAGCCGGGCGCGACGAAGCAGGATACGGCTGCCACCGGTGAGGCTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAATAGTCATCTCCGACTCGAAAGACGAGGAGACGACTGAACCCCCGCGGGTAAGTGCTAGTTACACTGGAAAGGTGGACGCACAAATACTGACCGTTCGGGACTGGGCATCGGTCAGGTACACCCCACTGATCCTCGGTTGCTGGCCAGCGACTATGCTGGAGCGGCACGAGGAGCAAGCCGGGTGGACCCACCGGTATCCAGTAGCCGGGCGCGACGAAGCAGGATACGGCTGCCACCGGTGAGGCTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................TTACACTGGAAAGGTGGACGCAC.......................................................................................................................................................................2316.006600000
.............................................................TTACACTGGAAAGGTGGACGCACAAA....................................................................................................................................................................2615.005500000
.............................................................TTACACTGGAAAGGTGGACGCACA......................................................................................................................................................................2413.003300000
...............................GACGACTGAACCCCCGCGGGTAA.....................................................................................................................................................................................................2313.003300000
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGG...............................................................2312.002200000
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGG..................................................................2012.002200000
.................TCGAAAGACGAGGAGACGACTGAACCCC..............................................................................................................................................................................................................2811.001000010
..........................................................................................TGACCGTTCGGGACTGGGCATCGG.........................................................................................................................................2411.001100000
.......................................................................................................................TACACCCCACTGATCCTCGGTTGCTGG.........................................................................................................2711.001100000
.............................................................TTACACTGGAAAGGTGGACGCACAAAG...................................................................................................................................................................2711.001100000
.............................................................TTACACTGGAAAGGTGGACGCA........................................................................................................................................................................2211.001100000
........................................................GCTAGTTACACTGGAAAGGTGGACG..........................................................................................................................................................................2511.001100000
..........................................................................................TGACCGTTCGGGACTGGGCATCGGT........................................................................................................................................2511.001010000
.......................................................................................................................TACACCCCACTGATCCTCGGTTGCTG..........................................................................................................2611.001100000
.............................................................TTACACTGGAAAGGTGGACGC.........................................................................................................................................................................2111.001100000
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGGACC............................................................2611.001100000
..............................................................TACACTGGAAAGGTGGACGCACA......................................................................................................................................................................2311.001100000
...............................GACGACTGAACCCCCGCGGGTA......................................................................................................................................................................................................2211.001100000
.........................................CCCCCGCGGGTAAGTGCTAG..............................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................TCCAGTAGCCGGGCGCGACGAAGCAGG.........................2711.001100000
.............................................................TTACACTGGAAAGGTGGACGCACAAATAC.................................................................................................................................................................2911.001100000
........................................................................................................................ACACCCCACTGATCCTCGGTT..............................................................................................................2111.001100000
........................................................................................................TGGGCATCGGTCAGGTACACCCCACTGA.......................................................................................................................2811.001100000
.........................................................................................................................CACCCCACTGATCCTCGGTTG.............................................................................................................2111.001100000
.......................................................................................................................................................................CACGAGGAGCAAGCCGGGTGG...............................................................2111.001100000
.................TCGAAAGACGAGGAGACGACTGAAC.................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGTGGAC.............................................................2511.001000001
.................TCGAAAGACGAGGAGACGACT.....................................................................................................................................................................................................................2111.001000010
.................TCGAAAGACGAGGAGACGAA......................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................GGCACGAGGAGCAAGCCGGGT.................................................................2111.001100000
.............................................................TTACACTGGAAAGGTGGACTT.........................................................................................................................................................................2111.001100000
..ATAGTCATCTCCGACTCGAAAGACG................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................TGCTGGAGCGGCACGAGGAGC..........................................................................2120.501000010
....................................................................................................................................TCCTCGGTTGCTGGCCAGCGA..................................................................................................21120.081100000

Generated: 05/17/2015 at 11:05 PM