dmo_815

CDS [Dmoj\GI14383-cds]; exon [dmoj_GLEANR_14874:1]; exon [dmoj_GLEANR_14874:2]; CDS [Dmoj\GI14383-cds]; intron [Dmoj\GI14383-in]

##################################################------------------------------------------------------------------------################################################## GCCGATTAGAGGACGATCGAGGCGATAACCGATGTCGCGACTCCGCGCGGGTAGCGTTTCGCTATGTTCCGGGGGCCGTCGAGAACAGGCGTGGATTGGCCCAGCCGGTCTATCGTCCGTAGCGCACGAGCCGACAGTCGGGTGCAGGCCGCCGGGATCGAGATGCCAGATC ************************************************.(((((...)))))((((((((......))).)))))(((((((((((((...))))))))).)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V041 embryo
...........................................................................CCGTCGAGAACAGGCGTGGATTGG.........................................................................	24	0	9	1.89	17	17	0	0	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGC........................................................................	25	0	9	1.44	13	11	1	1	0
...........................................................................CCGTCGAGAACAGGCGTGGATTG..........................................................................	23	0	9	1.44	13	11	2	0	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCCC......................................................................	27	0	9	0.44	4	2	1	1	0
............................................................................CGTCGAGAACAGGCGTGGATTGG.........................................................................	23	0	9	0.44	4	4	0	0	0
............................................................................CGTCGAGAACAGGCGTGGATTG..........................................................................	22	0	9	0.33	3	3	0	0	0
............................................................................................................................CACGAGCCGACAGTCGGGTGCAGC........................	24	1	4	0.25	1	0	1	0	0
............................................................................................................................CACGAGCCGACAGTCGGGTGCA..........................	22	0	4	0.25	1	0	1	0	0
.............................................................................................................................ACGAGCCGACAGTCGGGTGCAGG........................	23	0	4	0.25	1	0	1	0	0
............................................................................................................................CACGAGCCGACAGTCGGGTGCAGG........................	24	0	4	0.25	1	0	1	0	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCC.......................................................................	26	0	9	0.22	2	0	1	1	0
......................................................................GGGGGCCGTCGAGAACAGGCG.................................................................................	21	0	9	0.11	1	0	0	0	1
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCT.......................................................................	26	1	9	0.11	1	1	0	0	0
...................................................................TCCGGGGGCCGTCGAGAACAGGCG.................................................................................	24	0	9	0.11	1	1	0	0	0
............................................................................CGTCGAGAACAGGCGTGGAT............................................................................	20	0	9	0.11	1	1	0	0	0
............................................................................CGTCGAGAACAGGCGTGGATTGATA.......................................................................	25	3	10	0.10	1	1	0	0	0
GCCGATTAGAGGACGATCGAGGC.....................................................................................................................................................	23	0	10	0.10	1	1	0	0	0
........................................................TTTCGCTATGTTCCGGGGGCC...............................................................................................	21	0	10	0.10	1	0	0	1	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGTAT......................................................................	27	3	10	0.10	1	1	0	0	0
.................................................................................AGAACAGGCGTGGATTGGCC.......................................................................	20	0	13	0.08	1	0	0	1	0
.................................................................................AGAACAGGCGTGGAGTGGCC.......................................................................	20	1	13	0.08	1	0	0	0	1
.............................................................................GTCGAGAACAGGCGTGGATTGGC........................................................................	23	0	13	0.08	1	0	0	1	0
.........................................................CTCGCTATGTTCCGGGGG.................................................................................................	18	1	14	0.07	1	1	0	0	0
.......................................................GTTTCGCTATGTTCCGGGGGC................................................................................................	21	0	14	0.07	1	0	0	1	0
..........................................................TCGCTATGTTCCGGGGGC................................................................................................	18	0	14	0.07	1	1	0	0	0
......................................................CGTTTCGCTATGTTCCGGGG..................................................................................................	20	0	15	0.07	1	1	0	0	0
............................................................................................................................................GATGGAGGCCGCCGGGATAG............	20	3	16	0.06	1	0	1	0	0

##################################################------------------------------------------------------------------------##################################################
GCCGATTAGAGGACGATCGAGGCGATAACCGATGTCGCGACTCCGCGCGGGTAGCGTTTCGCTATGTTCCGGGGGCCGTCGAGAACAGGCGTGGATTGGCCCAGCCGGTCTATCGTCCGTAGCGCACGAGCCGACAGTCGGGTGCAGGCCGCCGGGATCGAGATGCCAGATC
**************************************************.(((((...)))))((((((((......))).)))))(((((((((((((...))))))))).)))).....**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

V110
male body

M060
embryo

V041
embryo

...........................................................................CCGTCGAGAACAGGCGTGGATTGG.........................................................................

1.89

...........................................................................CCGTCGAGAACAGGCGTGGATTGGC........................................................................

1.44

...........................................................................CCGTCGAGAACAGGCGTGGATTG..........................................................................

1.44

...........................................................................CCGTCGAGAACAGGCGTGGATTGGCCC......................................................................

0.44

............................................................................CGTCGAGAACAGGCGTGGATTGG.........................................................................

0.44

............................................................................CGTCGAGAACAGGCGTGGATTG..........................................................................

0.33

............................................................................................................................CACGAGCCGACAGTCGGGTGCAGC........................

0.25

............................................................................................................................CACGAGCCGACAGTCGGGTGCA..........................

0.25

.............................................................................................................................ACGAGCCGACAGTCGGGTGCAGG........................

0.25

............................................................................................................................CACGAGCCGACAGTCGGGTGCAGG........................

0.25

...........................................................................CCGTCGAGAACAGGCGTGGATTGGCC.......................................................................

0.22

......................................................................GGGGGCCGTCGAGAACAGGCG.................................................................................

0.11

...........................................................................CCGTCGAGAACAGGCGTGGATTGGCT.......................................................................

0.11

...................................................................TCCGGGGGCCGTCGAGAACAGGCG.................................................................................

0.11

............................................................................CGTCGAGAACAGGCGTGGAT............................................................................

0.11

............................................................................CGTCGAGAACAGGCGTGGATTGATA.......................................................................

0.10

GCCGATTAGAGGACGATCGAGGC.....................................................................................................................................................

0.10

........................................................TTTCGCTATGTTCCGGGGGCC...............................................................................................

0.10

...........................................................................CCGTCGAGAACAGGCGTGGATTGGTAT......................................................................

0.10

.................................................................................AGAACAGGCGTGGATTGGCC.......................................................................

0.08

.................................................................................AGAACAGGCGTGGAGTGGCC.......................................................................

0.08

.............................................................................GTCGAGAACAGGCGTGGATTGGC........................................................................

0.08

.........................................................CTCGCTATGTTCCGGGGG.................................................................................................

0.07

.......................................................GTTTCGCTATGTTCCGGGGGC................................................................................................

0.07

..........................................................TCGCTATGTTCCGGGGGC................................................................................................

0.07

......................................................CGTTTCGCTATGTTCCGGGG..................................................................................................

0.07

............................................................................................................................................GATGGAGGCCGCCGGGATAG............

0.06

CGGCTAATCTCCTGCTAGCTCCGCTATTGGCTACAGCGCTGAGGCGCGCCCATCGCAAAGCGATACAAGGCCCCCGGCAGCTCTTGTCCGCACCTAACCGGGTCGGCCAGATAGCAGGCATCGCGTGCTCGGCTGTCAGCCCACGTCCGGCGGCCCTAGCTCTACGGTCTAG ************************************************.(((((...)))))((((((((......))).)))))(((((((((((((...))))))))).)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V056 head
.....AATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	27	0	10	3.10	31	30	1	0	0	0
......ATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	26	0	10	2.30	23	19	2	1	1	0
.......TCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	25	0	10	2.20	22	15	7	0	0	0
............................................................CGATACAAGGCCCCCGGCAGCTCTT.......................................................................................	25	0	10	1.90	19	6	10	3	0	0
..........................................................AGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................	27	0	10	1.60	16	15	0	0	1	0
...........................................................GCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................	26	0	10	1.20	12	10	2	0	0	0
........CTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	24	0	10	1.00	10	8	2	0	0	0
........................................................AAAGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................	29	0	10	0.50	5	3	2	0	0	0
..........CCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	22	0	10	0.40	4	1	1	0	2	0
.........................................................AAGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................	28	0	10	0.40	4	4	0	0	0	0
.............................................................GATACAAGGCCCCCGGCAGCTCTT.......................................................................................	24	0	10	0.30	3	3	0	0	0	0
.................................................................CAAGGCCCCCGGCAGCTCTT.......................................................................................	20	0	10	0.30	3	1	2	0	0	0
......................................................................CCCCCGGCAGCTCTTGTCCGCACCT.............................................................................	25	0	8	0.25	2	0	2	0	0	0
........................................................................CCCGGCAGCTCTTGTCCGCACCT.............................................................................	23	0	9	0.22	2	0	2	0	0	0
....TAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	28	0	10	0.20	2	2	0	0	0	0
CGGCTAATCTCCTGCTAGCTCCGCTAT.................................................................................................................................................	27	0	10	0.20	2	1	1	0	0	0
.....AATCTCCTGCTAGCTCCGCTATTGGC.............................................................................................................................................	26	0	10	0.20	2	2	0	0	0	0
.........TCCTGCTAGCTCCGCTATTGGCTGCATC.......................................................................................................................................	28	2	6	0.17	1	1	0	0	0	0
.............................................................................CAGCTCTTGTCCGCACCTAACCGGGT.....................................................................	26	0	13	0.15	2	2	0	0	0	0
..................................................................................................................................................CCGGCGGCCCTAGCTCTACGG.....	21	0	8	0.13	1	0	0	0	0	1
.......................................................................CCCCGGCAGCTCTTGTCCGCACCT.............................................................................	24	0	9	0.11	1	0	1	0	0	0
............................................................................................................................................CCACCTCCGTCTGCCCTAGCT...........	21	3	9	0.11	1	1	0	0	0	0
..........................................................................CGGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................	29	0	9	0.11	1	1	0	0	0	0
............................................................................GCAGCTCTTGTCCGCACCTAACCGGTT.....................................................................	27	1	9	0.11	1	0	1	0	0	0
...........................................................................TGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................	28	1	9	0.11	1	1	0	0	0	0
...........................................................................GGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................	28	0	9	0.11	1	0	0	1	0	0
....................................................................GGCCCCCGGCAGCTCTTGT.....................................................................................	19	0	10	0.10	1	1	0	0	0	0
............................................................CGATACAAGGCCCCCGGCAGCTCT........................................................................................	24	0	10	0.10	1	1	0	0	0	0
............................................................CGATACGAGGCCCCCGGCAGCTCTT.......................................................................................	25	1	10	0.10	1	0	1	0	0	0
CGGCTAATCTCCTGCTAGCTC.......................................................................................................................................................	21	0	10	0.10	1	0	0	0	1	0
.....TATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	27	1	10	0.10	1	1	0	0	0	0
......ATCTCCTGCTAGCTCCCCTATTGGCT............................................................................................................................................	26	1	10	0.10	1	0	1	0	0	0
.....AATCTCCTGCTAGCTCCGCTATTG...............................................................................................................................................	24	0	10	0.10	1	1	0	0	0	0
......ATCTCCTGCTAGCTCCGCTATTGGGT............................................................................................................................................	26	1	10	0.10	1	0	1	0	0	0
.GGCTAATCTCCTGCTAGCTCCGCTAT.................................................................................................................................................	26	0	10	0.10	1	1	0	0	0	0
...................................................................AGGCCCCCGGCAGCTCTT.......................................................................................	18	0	10	0.10	1	0	1	0	0	0
............................................................CGATACAAGGCCCCCGGCAGCTATT.......................................................................................	25	1	10	0.10	1	0	1	0	0	0
..........................................................AGCGATACAAGGCCCCCGGCAGC...........................................................................................	23	0	10	0.10	1	1	0	0	0	0
............................................................CGATACAAGGCCCCCTGCAGCTCTT.......................................................................................	25	1	10	0.10	1	1	0	0	0	0
...........................................................ACGATACAAGGCCCCCGGCAGCTCTTGT.....................................................................................	28	1	10	0.10	1	1	0	0	0	0
....................................................................GGCCCCCGGCAGCTCTTGTCC...................................................................................	21	0	10	0.10	1	1	0	0	0	0
.GGCTAATCTCCTGCTAGCTCCGCTATT................................................................................................................................................	27	0	10	0.10	1	1	0	0	0	0
..........................................................AGCGATACAAGGCCCCCGGCAGCTCTTG......................................................................................	28	0	10	0.10	1	1	0	0	0	0
.......CCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	25	1	10	0.10	1	0	1	0	0	0
....GAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	28	1	10	0.10	1	0	1	0	0	0
..............................................................ATACAAGGCCCCCGGCAGCTCTT.......................................................................................	23	0	10	0.10	1	1	0	0	0	0
.....AGTCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	27	1	10	0.10	1	1	0	0	0	0
........TTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	24	1	10	0.10	1	1	0	0	0	0
......ATCTCCTGCTAGCTCCGCTATT................................................................................................................................................	22	0	10	0.10	1	1	0	0	0	0
...............................................................TACAAGGCCCCCGGCAGCTCTT.......................................................................................	22	0	10	0.10	1	1	0	0	0	0
............................................................CGATACAAGGCCCCCGGCAGCTC.........................................................................................	23	0	10	0.10	1	1	0	0	0	0
...CTAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	29	0	10	0.10	1	1	0	0	0	0
......ATCTCCTGCTAGCTCCGCTATTGGC.............................................................................................................................................	25	0	10	0.10	1	1	0	0	0	0
.........TCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................	23	0	10	0.10	1	0	1	0	0	0
.......CCTCCTGCTAGCTCCGCTATTGGGT............................................................................................................................................	25	2	10	0.10	1	0	1	0	0	0
CGGCTAATCTCCTGCTAGCTCCGCT...................................................................................................................................................	25	0	10	0.10	1	0	1	0	0	0
........................................................AAAGCGATACAAGGCCCCCGGCAGCTCGT.......................................................................................	29	1	10	0.10	1	0	1	0	0	0
......ATCTCCTGCTAGCTCAGCTATTGGCT............................................................................................................................................	26	1	10	0.10	1	0	1	0	0	0
...CTAATCTCCTGCTAGCTCCGCTATT................................................................................................................................................	25	0	10	0.10	1	0	1	0	0	0
.................................................................CAAGGCCCCCGGCAGCTATT.......................................................................................	20	1	11	0.09	1	0	1	0	0	0
.......................................................................................CCGCACCTAACCGGGTCGGCCA...............................................................	22	0	13	0.08	1	0	1	0	0	0
..............................................................................................TAACCGGGTCGGCCAGATAGCAGGCGT...................................................	27	1	14	0.07	1	0	1	0	0	0
................................................................................................ACCGCGTCGGCCATCTAGCAG.......................................................	21	3	14	0.07	1	0	1	0	0	0
.................................................................................................CCGGGTCGGCCAGATAGCAGGCGT...................................................	24	1	15	0.07	1	0	1	0	0	0
.....................................................CGCAAAGCGATACAAGGCCC...................................................................................................	20	0	15	0.07	1	1	0	0	0	0
.................................................................................................CCGGGTCGGCCAGATAGCA........................................................	19	0	15	0.07	1	1	0	0	0	0
...................................................................................TTGTCCGCACCCAAGCCGG......................................................................	19	3	19	0.05	1	1	0	0	0	0

CGGCTAATCTCCTGCTAGCTCCGCTATTGGCTACAGCGCTGAGGCGCGCCCATCGCAAAGCGATACAAGGCCCCCGGCAGCTCTTGTCCGCACCTAACCGGGTCGGCCAGATAGCAGGCATCGCGTGCTCGGCTGTCAGCCCACGTCCGGCGGCCCTAGCTCTACGGTCTAG
**************************************************.(((((...)))))((((((((......))).)))))(((((((((((((...))))))))).)))).....**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V056
head

.....AATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

3.10

......ATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

2.30

.......TCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

2.20

............................................................CGATACAAGGCCCCCGGCAGCTCTT.......................................................................................

1.90

..........................................................AGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................

1.60

...........................................................GCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................

1.20

........CTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

1.00

........................................................AAAGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................

0.50

..........CCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.40

.........................................................AAGCGATACAAGGCCCCCGGCAGCTCTT.......................................................................................

0.40

.............................................................GATACAAGGCCCCCGGCAGCTCTT.......................................................................................

0.30

.................................................................CAAGGCCCCCGGCAGCTCTT.......................................................................................

0.30

......................................................................CCCCCGGCAGCTCTTGTCCGCACCT.............................................................................

0.25

........................................................................CCCGGCAGCTCTTGTCCGCACCT.............................................................................

0.22

....TAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.20

CGGCTAATCTCCTGCTAGCTCCGCTAT.................................................................................................................................................

0.20

.....AATCTCCTGCTAGCTCCGCTATTGGC.............................................................................................................................................

0.20

.........TCCTGCTAGCTCCGCTATTGGCTGCATC.......................................................................................................................................

0.17

.............................................................................CAGCTCTTGTCCGCACCTAACCGGGT.....................................................................

0.15

..................................................................................................................................................CCGGCGGCCCTAGCTCTACGG.....

0.13

.......................................................................CCCCGGCAGCTCTTGTCCGCACCT.............................................................................

0.11

............................................................................................................................................CCACCTCCGTCTGCCCTAGCT...........

0.11

..........................................................................CGGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................

0.11

............................................................................GCAGCTCTTGTCCGCACCTAACCGGTT.....................................................................

0.11

...........................................................................TGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................

0.11

...........................................................................GGCAGCTCTTGTCCGCACCTAACCGGGT.....................................................................

0.11

....................................................................GGCCCCCGGCAGCTCTTGT.....................................................................................

0.10

............................................................CGATACAAGGCCCCCGGCAGCTCT........................................................................................

0.10

............................................................CGATACGAGGCCCCCGGCAGCTCTT.......................................................................................

0.10

CGGCTAATCTCCTGCTAGCTC.......................................................................................................................................................

0.10

.....TATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

......ATCTCCTGCTAGCTCCCCTATTGGCT............................................................................................................................................

0.10

.....AATCTCCTGCTAGCTCCGCTATTG...............................................................................................................................................

0.10

......ATCTCCTGCTAGCTCCGCTATTGGGT............................................................................................................................................

0.10

.GGCTAATCTCCTGCTAGCTCCGCTAT.................................................................................................................................................

0.10

...................................................................AGGCCCCCGGCAGCTCTT.......................................................................................

0.10

............................................................CGATACAAGGCCCCCGGCAGCTATT.......................................................................................

0.10

..........................................................AGCGATACAAGGCCCCCGGCAGC...........................................................................................

0.10

............................................................CGATACAAGGCCCCCTGCAGCTCTT.......................................................................................

0.10

...........................................................ACGATACAAGGCCCCCGGCAGCTCTTGT.....................................................................................

0.10

....................................................................GGCCCCCGGCAGCTCTTGTCC...................................................................................

0.10

.GGCTAATCTCCTGCTAGCTCCGCTATT................................................................................................................................................

0.10

..........................................................AGCGATACAAGGCCCCCGGCAGCTCTTG......................................................................................

0.10

.......CCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

....GAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

..............................................................ATACAAGGCCCCCGGCAGCTCTT.......................................................................................

0.10

.....AGTCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

........TTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

......ATCTCCTGCTAGCTCCGCTATT................................................................................................................................................

0.10

...............................................................TACAAGGCCCCCGGCAGCTCTT.......................................................................................

0.10

............................................................CGATACAAGGCCCCCGGCAGCTC.........................................................................................

0.10

...CTAATCTCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

......ATCTCCTGCTAGCTCCGCTATTGGC.............................................................................................................................................

0.10

.........TCCTGCTAGCTCCGCTATTGGCT............................................................................................................................................

0.10

.......CCTCCTGCTAGCTCCGCTATTGGGT............................................................................................................................................

0.10

CGGCTAATCTCCTGCTAGCTCCGCT...................................................................................................................................................

0.10

........................................................AAAGCGATACAAGGCCCCCGGCAGCTCGT.......................................................................................

0.10

......ATCTCCTGCTAGCTCAGCTATTGGCT............................................................................................................................................

0.10

...CTAATCTCCTGCTAGCTCCGCTATT................................................................................................................................................

0.10

.................................................................CAAGGCCCCCGGCAGCTATT.......................................................................................

0.09

.......................................................................................CCGCACCTAACCGGGTCGGCCA...............................................................

0.08

..............................................................................................TAACCGGGTCGGCCAGATAGCAGGCGT...................................................

0.07

................................................................................................ACCGCGTCGGCCATCTAGCAG.......................................................

0.07

.................................................................................................CCGGGTCGGCCAGATAGCAGGCGT...................................................

0.07

.....................................................CGCAAAGCGATACAAGGCCC...................................................................................................

0.07

.................................................................................................CCGGGTCGGCCAGATAGCA........................................................

0.07

...................................................................................TTGTCCGCACCCAAGCCGG......................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6482:386926-387097 -	dmo_815	GCCGATTAGAGGACGATCGAGGCGATAACCGATGTCGCGACTCCGCGCGGGTAGCGTTTCGCTATGTTCCGGGGGCCGTCGAGAACAGGCGTGGATTGGCCCAGCCGGTCTATCGTCCGTAGCGCACGAGCCGACAGTCGGGTGCAGGCCGCCGGGATCGAGATGCCAGATC
droTak1	scf7180000412386:5429-5430 -		GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_003:158478-158511 -		GCGGTGCCGAGGACGAGCGGGGAGAGGACCCATG------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:2295159-2295208 -		C--------------------------------------------------------------------------------------------------------------------------GCAGTAGATGGGAGACTGGAGCAGAGCGCGAGGATCGAGATGCCACGTC

Species

Coordinate

Alignment

droMoj3

scaffold_6482:386926-387097 -

dmo_815

GCCGATTAGAGGACGATCGAGGCGATAACCGATGTCGCGACTCCGCGCGGGTAGCGTTTCGCTATGTTCCGGGGGCCGTCGAGAACAGGCGTGGATTGGCCCAGCCGGTCTATCGTCCGTAGCGCACGAGCCGACAGTCGGGTGCAGGCCGCCGGGATCGAGATGCCAGATC

droTak1

scf7180000412386:5429-5430 -

GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droYak3

v2_chrUn_003:158478-158511 -

GCGGTGCCGAGGACGAGCGGGGAGAGGACCCATG------------------------------------------------------------------------------------------------------------------------------------------

droEre2

scaffold_4845:2295159-2295208 -

C--------------------------------------------------------------------------------------------------------------------------GCAGTAGATGGGAGACTGGAGCAGAGCGCGAGGATCGAGATGCCACGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCCGATTAGAGGACGATCGAGGCGATAACCGATGTCGCGACTCCGCGCGGGTAGCGTTTCGCTATGTTCCGGGGGCCGTCGAGAACAGGCGTGGATTGGCCCAGCCGGTCTATCGTCCGTAGCGCACGAGCCGACAGTCGGGTGCAGGCCGCCGGGATCGAGATGCCAGATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................CCGTCGAGAACAGGCGTGGATTGG.........................................................................	24	9	1.89	17	17	0	0	0	0	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGC........................................................................	25	9	1.44	13	11	0	0	0	1	1
...........................................................................CCGTCGAGAACAGGCGTGGATTG..........................................................................	23	9	1.44	13	11	0	0	0	0	2
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCCC......................................................................	27	9	0.44	4	2	0	0	0	1	1
............................................................................CGTCGAGAACAGGCGTGGATTGG.........................................................................	23	9	0.44	4	4	0	0	0	0	0
............................................................................CGTCGAGAACAGGCGTGGATTG..........................................................................	22	9	0.33	3	3	0	0	0	0	0
............................................................................................................................CACGAGCCGACAGTCGGGTGCAGC........................	24	4	0.25	1	0	0	0	0	0	1
............................................................................................................................CACGAGCCGACAGTCGGGTGCA..........................	22	4	0.25	1	0	0	0	0	0	1
.............................................................................................................................ACGAGCCGACAGTCGGGTGCAGG........................	23	4	0.25	1	0	0	0	0	0	1
............................................................................................................................CACGAGCCGACAGTCGGGTGCAGG........................	24	4	0.25	1	0	0	0	0	0	1
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCC.......................................................................	26	9	0.22	2	0	0	0	0	1	1
......................................................................GGGGGCCGTCGAGAACAGGCG.................................................................................	21	9	0.11	1	0	1	0	0	0	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGCT.......................................................................	26	9	0.11	1	1	0	0	0	0	0
...................................................................TCCGGGGGCCGTCGAGAACAGGCG.................................................................................	24	9	0.11	1	1	0	0	0	0	0
............................................................................CGTCGAGAACAGGCGTGGAT............................................................................	20	9	0.11	1	1	0	0	0	0	0
............................................................................CGTCGAGAACAGGCGTGGATTGATA.......................................................................	25	10	0.10	1	1	0	0	0	0	0
GCCGATTAGAGGACGATCGAGGC.....................................................................................................................................................	23	10	0.10	1	1	0	0	0	0	0
........................................................TTTCGCTATGTTCCGGGGGCC...............................................................................................	21	10	0.10	1	0	0	0	0	1	0
...........................................................................CCGTCGAGAACAGGCGTGGATTGGTAT......................................................................	27	10	0.10	1	1	0	0	0	0	0
.................................................................................AGAACAGGCGTGGATTGGCC.......................................................................	20	13	0.08	1	0	0	0	0	1	0
.............................................................................GTCGAGAACAGGCGTGGATTGGC........................................................................	23	13	0.08	1	0	0	0	0	1	0
.......................................................GTTTCGCTATGTTCCGGGGGC................................................................................................	21	14	0.07	1	0	0	0	0	1	0
..........................................................TCGCTATGTTCCGGGGGC................................................................................................	18	14	0.07	1	1	0	0	0	0	0
......................................................CGTTTCGCTATGTTCCGGGG..................................................................................................	20	15	0.07	1	1	0	0	0	0	0

droTak1

GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

GCGGTGCCGAGGACGAGCGGGGAGAGGACCCATG------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....GCCGAGGACGAGCGGGGAGAGGACC..............................................................................................................................................	25	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
.....GCCGAGGACGAGCGGGGAGAGG.................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

C--------------------------------------------------------------------------------------------------------------------------GCAGTAGATGGGAGACTGGAGCAGAGCGCGAGGATCGAGATGCCACGTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................TGGAGCAGAGCGCGAGGATCGAGAT........	25	1	1.00	1	1	0	0	0	0	0	0

dmo_815

scaffold_6482:386976-387047 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads