dmo_811

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	+
Homo6	DNA	hAT-Pegasus	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATGGACCGACGGATGTACGAATAGATATATGAGATATACACATGGTTGAATAGACTCAGCTCGTTGTTCTGATGAGGAGTGCACGTACATACTTTATGGGGTCTGCCACGCCCCTTCTTTCGGTCACATTTCCATTCTCAGAATTTCCACAAGTACAATTTACATTAAAATACAACATTTGAATATAATTGTGAATTCAGGTGAATTCAGCTAGCAAGCAGCTGGAGCACACGCTTAATGACTTCGAGGA *******************************************************************************************.....(((((.......))))).........(((((.((..((((...........................................))))..)).)))))....**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body
.............................................................................................TTTATGGGGTCTGCCACGCCC.........................................................................................................................................	21	0	7	1.57	11	0	11	0
...........................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGC............................	20	0	1	1.00	1	1	0	0
....................................................................................................................................................................................TGAATATAATTGTGAATTC....................................................	19	0	1	1.00	1	0	1	0
.........................................................CAGCTCGTTGTTCTGATGA...............................................................................................................................................................................	19	0	1	1.00	1	1	0	0
...........................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGCT...........................	21	0	1	1.00	1	1	0	0
...................................................................................................................................................................................................................................GCACACGCTTAATGACTTCGAG..	22	0	1	1.00	1	1	0	0
................................................................................................................................................................................................................CAGCTAGCAAGCAGCTGGAGCACACG.................	26	0	1	1.00	1	0	0	1
...........................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGCTG..........................	22	0	1	1.00	1	1	0	0
....GACCGACGGATGTACGAATAGAT................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1
................................................................................................................................................................................CATTTGAATATAATTGTGAATT.....................................................	22	0	1	1.00	1	1	0	0
.................................................................................................................................................................................................................AGCTAGCAAGCAGCTGGAGCACACGCTT..............	28	0	1	1.00	1	1	0	0
....................................................................................................................................................................................................................................CACACGCTTAATGACTTCGAGG.	22	0	1	1.00	1	0	0	1
...........................................................................................ACTTTATGGGGTCTGCCACGC...........................................................................................................................................	21	0	20	0.25	5	5	0	0
............................................................................................CTTTATGGGGTCTGCCACGCCC.........................................................................................................................................	22	0	7	0.14	1	0	1	0
........................................................................................................................................................................................................................AAGAAGCCCGAGCACACGCT...............	20	3	7	0.14	1	1	0	0
..............................................................................................TTATGGGGTCTGCCACGCCC.........................................................................................................................................	20	0	8	0.13	1	0	1	0
.............................................................................................TGTATGGGGTCTGCCACGCCC.........................................................................................................................................	21	1	9	0.11	1	0	1	0
.............................................................................................TGTTTGGGGTCTGCCACGCCC.........................................................................................................................................	21	2	20	0.10	2	0	2	0
.............................................................................................TTTATGGGGTCTTCCACGCCC.........................................................................................................................................	21	1	14	0.07	1	0	1	0
.............................................................................................................................................................................................................................GTTAGAGCACACGCTTGAT...........	19	3	17	0.06	1	0	0	1
..............................................................................................TTTTGGGGTCTGCCACGCCC.........................................................................................................................................	20	1	20	0.05	1	0	1	0
.............................................................................................TTTTTGGGGTCTGCCACGCCC.........................................................................................................................................	21	1	20	0.05	1	0	1	0

CTACCTGGCTGCCTACATGCTTATCTATATACTCTATATGTGTACCAACTTATCTGAGTCGAGCAACAAGACTACTCCTCACGTGCATGTATGAAATACCCCAGACGGTGCGGGGAAGAAAGCCAGTGTAAAGGTAAGAGTCTTAAAGGTGTTCATGTTAAATGTAATTTTATGTTGTAAACTTATATTAACACTTAAGTCCACTTAAGTCGATCGTTCGTCGACCTCGTGTGCGAATTACTGAAGCTCCT **************************************************.....(((((.......))))).........(((((.((..((((...........................................))))..)).)))))....*******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
...............................................................................CACGTGCATGTATGAAATACCCCA....................................................................................................................................................	24	0	1	1.00	1	1
......................................................................................................AGACGGTTCGGGCAAGAGA..................................................................................................................................	19	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:16724535-16724785 -	dmo_811	GATGGA--CCGACGGATGTACGAATAGATATAT-GAGATATACACATGGTTGAATAGACTCAGCTCGTTGTTCTGATGAGGAGTGCACGTACATACTTTATGGGGTCTGCCACGCCC-CTTCTTTCGGTCACATTTC--CATTCTCAGAATTT-CCACAAGT--AC--------------------AATTTACATTAAAATACA---------------ACAT------------------------TTGAATATAATTGTGAATTCAGGTGAATTCAGCTAGCAAGCAGCTGGAGCACACGCTTAATGACTTCGAGGA
droVir3	scaffold_12875:8868291-8868454 -		A-CGGA--CGGACGTACGGACG--------GACAGACAGATGGACATAGCTAGATCGACTCGGCTATTGATGCTGATCAAGAATATACATATATACTTTATAGGGTCGCAGATGCTTCCTTCTGCCTGTTACATACATTT------GGGCTTT-GCACAAAT--AC--------------------GATATAAACTTATATCCA-------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:17665155-17665303 +		GATCTACGTGTTCATACAGACG--------GAAGGACGGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAGATGCTTCCTTCAGCATGTTACAAATATTT-------------G-CACAAAT--CC--------------------ATTATAC------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004956:88403-88606 -		GACGGA--CAGACGGACAGACGA----TCAGACGGACAGACGGACTTGGCTATATCGACTCAGCTTCTCATGTTGATCAAGAATATATACATATACTTTATGGGGTCGGAAACGTCTCCTTCTGTGCGTTACAAACATCT-------------G-ACCAATTTTATAATACCATCTGCAAGATTACAA----------------------GTAACTATATTAAGAAAATATCT----------------TTTTATAATTA-----------------------------------------------------CG----
dp5	Unknown_group_139:25894-26076 -		GACGGA--CAGACGGACGGACGGACGGACAGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTT------A-CCACAAAT--CT--------------------AATATACCCCAATACTCATTTTGAGT-----------------------------------------A--------------------------T--------------------------------------
droPer2	scaffold_1341:998-1197 +		GACGGA--CAGTCGGAC----G--------GACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTATTACTT-ATA--TGT--AC--------------------A----------------------TAC-ATATGTACAAAAATAAAC--TACAATTCGGTG-----------------GACTAAGTTGGGATCACCT--------------------------------------
droAna3	scaffold_13282:64807-64963 +		GACAGA--CAGACATGCAGACAG----ACAGACGGACAGACGCACATACTCATATTGACTCAGAAGGTGATCCTGGTCAAGAATATATGTATATACTTTATAGGGTCGGGGATGTCTCCTTCAATGCGTTGCACACTTTT--TACCACAATTT-GCAAGAGT--AC--------------------AA-----------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396571:338571-338652 -		AATTTA----------------------------------------------TATTAATTTTAATTTTAATTTTTAAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGCTGGAAAACAACTGGAGCATACCCTCAACGAATTCGAGCA
droKik1	scf7180000302387:237111-237232 +		GACGGA--CAGACGGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATGTATACTTTATAGGGTCAAAAACGTCA------CTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453830:272441-272542 -		GACAGA--CAGACAGACGGACGGACAGACAG----ACAGACGTACAGACGGATTTCGATTCAGATCGTGATGCTGATCAAGAATGTATATACATACTTTATAGGGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491249:2783869-2784059 +		GACGGA--CAGACGGACAGACG--------GACGGACAGACGGGCATGGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATATGTATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTCT-------------G-ACTGAAATTATAATACCCTCTGCAAGGGTATAA----------------------AAAATTATAATAC------------------------TCAAATACACTTA--------------------T--------------------------------------
droRho1	scf7180000773652:6455-6609 +		GACAGA--CAGACAGGCAGACGGACAGACAGACGGACAGACGGACATGGCTAAATCGACTCGGCTAGTGATCCTGATCAAGAATATATGTATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTT-------------G-CACGAAT--AC--------------------AATATAC------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301495:1178025-1178176 +		AATAGA--CGGACAGACGTACG--------GACGGAAAGACGGGCATGGCTAGATTGACTCGGCTATTGATCCTGATCAAGATTATACCAATACTCTTTATGGGGTCAAAAACGCTTTCTTCTGCTTGTTAAATACATTC-------------C-GACAAAT--CT--------------------AATATACGCTAA-------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414195:19867-20078 +		TACGGA--CAGACA----------------TACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATATGTATATACTTCATAGGGTCGGAAATGCTTCTAAATAACTGTTACATACTTTT-------------GCCAGAAAT--ACAATAACCCTTGTA-CTC----------------------TACGAGTAACGGATATAACTATAAACCT----------------------------------ATAGAGATA--------TAGCAGCTGAAG-----GCTTAAAGATTGCG----
droEug1	scf7180000405130:1081-1200 +		TACGGA--TGGACGGAC----G--------GACGGACAGACGGACATGGCTTAATGGACTTCGCTTTTGATACTGATCAAGAATGTATTTATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCCGTTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:13302686-13302738 +		CAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAACGAGTTCGAACA
droSim2	x:12646045-12646107 +		ATGGCA--ATTACAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAACGAGTTCGAGCA
droSec2	scaffold_21:1055072-1055134 +		ATGGCA--ATTACAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAAAGAGTTCGAACA
droYak3	v2_chr2L_random_028:1017198-1017394 +		GACGGA--CAGACGGACAGACG--------GACGGACAGACGGACATGGTCATATCGACTCGGCTATTGGTCCTCTTCAAGAATATATGTATATACTTTATATGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTCTT------AAACTTT-AC-------------------------TC----------------------TACGAGTAACGAGTATAATTATAAAC--AAAAATTGTGTGATTCAAATTCAATT------------------AAAT--------------------------------------
droEre2	scaffold_4690:17702196-17702310 -		A-CGGA--CAGA--------CG--------GACGGACAGACGAACATGGCCAGATCGACTCGGCTATTTATCCTGATCAAGAATATACATATATACTTTATATGGTCGAACACGTTTCCTTCTGCCTGTTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GATGGA--CCGACGGATGTACGAATAGATATAT-GAGATATACACATGGTTGAATAGACTCAGCTCGTTGTTCTGATGAGGAGTGCACGTACATACTTTATGGGGTCTGCCACGCCC-CTTCTTTCGGTCACATTTC--CATTCTCAGAATTT-CCACAAGT--AC--------------------AATTTACATTAAAATACA---------------ACAT------------------------TTGAATATAATTGTGAATTCAGGTGAATTCAGCTAGCAAGCAGCTGGAGCACACGCTTAATGACTTCGAGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................TTTATGGGGTCTGCCACGCCC-.........................................................................................................................................................................................................	21	7	1.57	11	0	0	0	0	11	0
...............................................................................................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGC............................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................TGAATATAATTGTGAATTC....................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................CAGCTCGTTGTTCTGATGA................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGCT...........................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCACACGCTTAATGACTTCGAG..	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CAGCTAGCAAGCAGCTGGAGCACACG.................	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................GAATTCAGCTAGCAAGCAGCTG..........................	22	1	1.00	1	1	0	0	0	0	0
....GA--CCGACGGATGTACGAATAGAT..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................CAT------------------------TTGAATATAATTGTGAATT.....................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGCTAGCAAGCAGCTGGAGCACACGCTT..............	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CACACGCTTAATGACTTCGAGG.	22	1	1.00	1	0	0	0	0	0	1
..............................................................................................ACTTTATGGGGTCTGCCACGC............................................................................................................................................................................................................	21	20	0.25	5	5	0	0	0	0	0
...............................................................................................CTTTATGGGGTCTGCCACGCCC-.........................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	1	0
.................................................................................................TTATGGGGTCTGCCACGCCC-.........................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	1	0

droVir3

A-CGGA--CGGACGTACGGACG--------GACAGACAGATGGACATAGCTAGATCGACTCGGCTATTGATGCTGATCAAGAATATACATATATACTTTATAGGGTCGCAGATGCTTCCTTCTGCCTGTTACATACATTT------GGGCTTT-GCACAAAT--AC--------------------GATATAAACTTATATCCA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................TTGATGCTGATCAAGAATATACATATA..................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATCAAGAATATACATATATACTT.............................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TCGACTCGGCTATTGATGCTGATC.................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TCAAGAATATACATATATACTT.............................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TTGATGCTGATCAAGAATATACATAT...................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CTAGATCGACTCGGCTATTGATG.......................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....A--CGGACGTACGGACG--------GAC..............................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GATCTACGTGTTCATACAGACG--------GAAGGACGGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAGATGCTTCCTTCAGCATGTTACAAATATTT-------------G-CACAAAT--CC--------------------ATTATAC------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GACGGA--CAGACGGACAGACGA----TCAGACGGACAGACGGACTTGGCTATATCGACTCAGCTTCTCATGTTGATCAAGAATATATACATATACTTTATGGGGTCGGAAACGTCTCCTTCTGTGCGTTACAAACATCT-------------G-ACCAATTTTATAATACCATCTGCAAGATTACAA----------------------GTAACTATATTAAGAAAATATCT----------------TTTTATAATTA-----------------------------------------------------CG----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................TGCGTTACAAACATCT-------------G-ACCAATTT............................................................................................................................................................	25	20	0.45	9	0	0	0	9	0
............CGGACAGACGA----TCAGACGGAC..........................................................................................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0
....................................................TATCGACTCAGCTTCTCATGTTGA...................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
.............................................................................................TACTTTATGGGGTCGGAAACGTCT..........................................................................................................................................................................................................	24	20	0.15	3	0	0	0	3	0
...............................................GGCTATATCGACTCAGCTTCTCATG.......................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
.............................................................................................TACTTTATGGGGTCGGAAACGTCTCCT.......................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0
.........................................................................TGATCAAGAATATATACATATACTT.............................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0
...........................................................................................................................GTGCGTTACAAACATCT-------------G-ACCAATTT............................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.......................................................................................TACATATACTTTATGGGGTCGGAA................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................TTTATGGGGTCGGAAACGTCTC.........................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................ACATATACTTTATGGGGTCGG..................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

GACGGA--CAGACGGACGGACGGACGGACAGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTT------A-CCACAAAT--CT--------------------AATATACCCCAATACTCATTTTGAGT-----------------------------------------A--------------------------T--------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................TCGGAAACGATTCCTTCTGGACGT..............................................................................................................................................................................................	24	20	140.90	2818	0	2818	0	0	0	0	0	0	0	0
...............ACGGACGGACGGACAGACGGA...........................................................................................................................................................................................................................................................................................	21	20	12.15	243	0	0	0	0	0	0	0	0	243	0
...........................ACAGACGGACAGACAGACATGGC.............................................................................................................................................................................................................................................................................	23	20	2.60	52	0	0	0	0	0	0	0	0	52	0
...............................ACGGACAGACAGACATGGCTC...........................................................................................................................................................................................................................................................................	21	20	1.25	25	0	25	0	0	0	0	0	0	0	0
........................CGGACAGACGGACAGACAGAC..................................................................................................................................................................................................................................................................................	21	20	0.75	15	0	0	0	0	0	0	0	0	15	0
....................................................................................................TGGGGTCGGAAACGATTCCTTCTGGACGT..............................................................................................................................................................................................	29	20	0.60	12	0	0	0	0	0	0	0	12	0	0
......................GACGGACAGACGGACAGACAGACATG...............................................................................................................................................................................................................................................................................	26	20	0.55	11	0	0	0	0	0	0	0	0	11	0
.................GGACGGACGGACAGACGGAC..........................................................................................................................................................................................................................................................................................	20	20	0.50	10	0	0	0	0	0	0	0	0	10	0
.............................AGACGGACAGACAGACATGGCTCAAT........................................................................................................................................................................................................................................................................	26	20	0.50	10	0	0	0	0	0	0	0	0	10	0
..................................................TCAATCGACTCGGCTATTGATG.......................................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...............ACGGACGGACGGACAGACGGACAGACA.....................................................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	0	0	0	0	0	8	0	0
.............................AGACGGACAGACAGACATGGC.............................................................................................................................................................................................................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
......................................................................TGCTGATCAAGAATATATGTATATAC...............................................................................................................................................................................................................................	26	16	0.31	5	0	0	0	0	0	0	0	4	1	0
..............................GACGGACAGACAGACATGGCTCAATC.......................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	6	0
.............GGACGGACGGACGGACAGACGG............................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	2	0	2
.......................ACGGACAGACGGACAGACAGACAT................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	4	0
..................GACGGACGGACAGACGGACAGACAGA...................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	4	0	0
......................................................................TGCTGATCAAGAATATATGTATATA................................................................................................................................................................................................................................	25	19	0.16	3	0	1	0	0	0	0	1	0	1	0
....................................................................................................TGGGGTCGGAAACGATTCCTTCTGGAC................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................GGACGGACGGACAGACGGACA.........................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.....................GGACGGACAGACGGACAGACAG....................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	3
....................CGGACGGACAGACGGACAGACC.....................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	3
.................GGACGGACGGACAGACGGACAGACA.....................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........AGACGGACGGACGGACGGACAGACGG............................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.ACGGA--CAGACGGACGGACGGACGGAC..................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.ACGGA--CAGACGGACGGACG.........................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................CGGACGGACAGACGGACAGAC......................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................CTTCTGGACGTTACACACATCCACTT...............................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................ATGTATATACTTTATGGGGTC....................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	0	1	0	0	0
................................................................................................................................................TT------A-CCACAAAT--CT--------------------AATATACCCCAAT........................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0
......................................................................TGCTGATCAAGAATATATGTATA..................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0
......................................................................TGCTGATCAAGAATATATGTATATACTT.............................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................TGCTGATCAAGAATATATGTATATACT..............................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	1	0	0	0	0	0	0
...GGA--CAGACGGACGGACGGA.......................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.ACGGA--CAGACGGACGGACGGACGG....................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........ACGGACGGACGGACGGACAGACGG............................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................CGGACAGACGGACAGACA.....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................GATTCCTTCTGGACGTTACACACATCCAC.................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................CAGACAGACATGGCTCAATC.......................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................CT--------------------AATATACCCCAATACTCA...................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................ACGGACAGACAGACATGGCTCAA.........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............GACGGACGGACGGACAGACGGACAGA.......................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................ACGGACGGACAGACGGACAGACA.....................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................CGGACGGACAGACGGACAGA.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................T--------------------AATATACCCCAATACTCATT.................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................ACAGACATGGCTCAATCGACTCGGCT..............................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........CAGACGGACGGACGGACGGACAGACG.............................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................TGCTGATCAAGAATATATGTATT..................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................ACAGACGGACAGACAGACA.................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................ATTCCTTCTGGACGTTAC...........................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........AGACGGACGGACGGACGGACAGACGGA...........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................TACTTTATGGGGTCGGAAACGATT..........................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........CAGACGGACGGACGGACGGACAGACGG............................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................GCTGATCAAGAATATATGTATAT.................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................TGCTGATCAAGAATATATGTATAT.................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................GACATGGCTCAATCGACTCG.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................TATATACTTTATGGGGTCGGAA................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................GGACAGACGGACAGACAGACATGG..............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................CGGACAGACGGACAGACAGACATG...............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................AGACGGACAGACAGACATGG..............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GACGGA--CAGTCGGAC----G--------GACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTATTACTT-ATA--TGT--AC--------------------A----------------------TAC-ATATGTACAAAAATAAAC--TACAATTCGGTG-----------------GACTAAGTTGGGATCACCT--------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................CAGACATGGCTCAATCGACT...................................................................................................................................................................................................................................................................	20	20	0.10	2	0	1	0	0	0	1
.......................................................................GCTGATCAAGAATATATGTATATA................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................GTATATACTTTATGGGGTCGG..................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.......................................................................................TGTATATACTTTATGGGGTC....................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.........................................AGACATGGCTCAATCGACTCGGC...............................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
......................................................................TGCTGATCAAGAATATATGTATATACTT.............................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0

droAna3

GACAGA--CAGACATGCAGACAG----ACAGACGGACAGACGCACATACTCATATTGACTCAGAAGGTGATCCTGGTCAAGAATATATGTATATACTTTATAGGGTCGGGGATGTCTCCTTCAATGCGTTGCACACTTTT--TACCACAATTT-GCAAGAGT--AC--------------------AA-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................CTCCTTCAATGCGTTGCACACTTTT--T................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
.........................................................................................TATATACTTTATAGGGTCGGGGATGT............................................................................................................................................................................................................	26	7	0.29	2	0	1	1	0	0	0
.........................................................................................TATATACTTTATAGGGTCGGGGA...............................................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0
.............................................................................................TACTTTATAGGGTCGGGGATGTCTCCTT......................................................................................................................................................................................................	28	6	0.17	1	1	0	0	0	0	0
.........................................................................................TATATACTTTATAGGGTCGGGGATG.............................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
............................................................................................ATACTTTATAGGGTCGGGGATGTC...........................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
.............................................................................................TACTTTATAGGGTCGGGGATGTC...........................................................................................................................................................................................................	23	8	0.13	1	1	0	0	0	0	0
.........................................................................................TATATACTTTATAGGGTCGGGG................................................................................................................................................................................................................	22	8	0.13	1	1	0	0	0	0	0
...............................................................................................CTTTATAGGGTCGGGGATGTCTCC........................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
.............................................................................................TACTTTATAGGGTCGGGGATG.............................................................................................................................................................................................................	21	9	0.11	1	1	0	0	0	0	0
....................................................................................................TAGGGTCGGGGATGTCTCC........................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	1
.................................................................................................TTATAGGGTCGGGGATGTCTC.........................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	1	0
................................................................................................................TGTCTCCTTCAATGCGTTGCA..........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................TATATACTTTATAGGGTCGGGGAC..............................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................GTCTCCTTCAATGCGTTGCA..........................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................GTATATACTTTATAGGGTCGG..................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
................................................................................................................TGTCTCCTTCAATGCGTTGCACACT......................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................ATGTCTCCTTCAATGCGTTGC...........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droBip1

AATTTA----------------------------------------------TATTAATTTTAATTTTAATTTTTAAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGCTGGAAAACAACTGGAGCATACCCTCAACGAATTCGAGCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GACGGA--CAGACGGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATATGTATACTTTATAGGGTCAAAAACGTCA------CTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GACAGA--CAGACAGACGGACGGACAGACAG----ACAGACGTACAGACGGATTTCGATTCAGATCGTGATGCTGATCAAGAATGTATATACATACTTTATAGGGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GACGGA--CAGACGGACAGACG--------GACGGACAGACGGGCATGGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATATGTATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTCT-------------G-ACTGAAATTATAATACCCTCTGCAAGGGTATAA----------------------AAAATTATAATAC------------------------TCAAATACACTTA--------------------T--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GACAGA--CAGACAGGCAGACGGACAGACAGACGGACAGACGGACATGGCTAAATCGACTCGGCTAGTGATCCTGATCAAGAATATATGTATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTT-------------G-CACGAAT--AC--------------------AATATAC------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AATAGA--CGGACAGACGTACG--------GACGGAAAGACGGGCATGGCTAGATTGACTCGGCTATTGATCCTGATCAAGATTATACCAATACTCTTTATGGGGTCAAAAACGCTTTCTTCTGCTTGTTAAATACATTC-------------C-GACAAAT--CT--------------------AATATACGCTAA-------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACGGA--CAGACA----------------TACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATATGTATATACTTCATAGGGTCGGAAATGCTTCTAAATAACTGTTACATACTTTT-------------GCCAGAAAT--ACAATAACCCTTGTA-CTC----------------------TACGAGTAACGGATATAACTATAAACCT----------------------------------ATAGAGATA--------TAGCAGCTGAAG-----GCTTAAAGATTGCG----	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACGGA--TGGACGGAC----G--------GACGGACAGACGGACATGGCTTAATGGACTTCGCTTTTGATACTGATCAAGAATGTATTTATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCCGTTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAACGAGTTCGAACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................AGCTGGAGCACACGCTCAACGAG........	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................................................................................................AAGCAGCTGGAGCACACGCTC..............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................GCAAGCAGCTGGAGCACACGC................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCAAGCAGCTGGAGCACA...................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACACGCTCAACGAGTTCGAACA	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGCACACGCTCAACGAGTT......	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CAAGCAGCTGGAGCACACGCTCAACG..........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................AGCACACGCTCAACGAGTTCG....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCA..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGA........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CTCGCCAGCAAGCAGCTGGA........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AGCAGCTGGAGCACACGCT...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CACACGCTCAACGAGTTCGAAC.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AAGCAGCTGGAGCACACGCT...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATGGCA--ATTACAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAACGAGTTCGAGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGA........................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGA........................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGC......................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCA..............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GCCAGCAAGCAGCTGGAGCACACGC................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATGGCA--ATTACAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTGGAGCACACGCTCAAAGAGTTCGAACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCT...........................	21	1	7.00	7	0	7	0	0
...............GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCT...........................	23	1	3.00	3	1	2	0	0
.................................................................................................................................................................................................................................................................................ATCTCGCCAGCAAGCAGCT...........................	19	1	1.00	1	0	1	0	0
...............GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGC...............................	19	1	1.00	1	0	1	0	0
.................G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCTG..........................	22	1	1.00	1	0	1	0	0
................TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCGCCAGCAAGCAGCT...........................	22	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................GCAAGCAGCTGGAGCACACGCTC..............	23	1	1.00	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................AGCAGCTGGAGCACACGCTCAAAGAGT.......	27	1	1.00	1	0	1	0	0

droYak3

GACGGA--CAGACGGACAGACG--------GACGGACAGACGGACATGGTCATATCGACTCGGCTATTGGTCCTCTTCAAGAATATATGTATATACTTTATATGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTCTT------AAACTTT-AC-------------------------TC----------------------TACGAGTAACGAGTATAATTATAAAC--AAAAATTGTGTGATTCAAATTCAATT------------------AAAT--------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................TCGGAAACGCTTCCTTCT....................................................................................................................................................................................................	18	20	0.45	9	0	0	0	0	0	0	0	0	0	0	9
............................................................................................ATACTTTATATGGTCGGAAACGCTTC.........................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0
.......................................ACGGACATGGTCATATCGAC....................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTCCTTCTCCCTGTTACATACT......................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGGACAGACG--------GACGGACAGACGGAC..................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
.............GGACAGACG--------GACGGACAGA.......................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TTATATGGTCGGAAACGCTTCCTTCTCCC.................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................GACG--------GACGGACAGACGGACATGGT.............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................TGGTCATATCGACTCGGCTATTGGTCC......................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................ATGGTCGGAAACGCTTCCTTCTCCC.................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........AGACGGACAGACG--------GACGGACAGACG.....................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
............CGGACAGACG--------GACGGACAGACGGACA.................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGGACAGACG--------GACGGACAGA.......................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TTCCTTCTCCCTGTTACATAC.......................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............GACAGACG--------GACGGACAGACGG....................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
......................................................................................ATGTATATACTTTATATGGTCGGAAAC..............................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TTATATGGTCGGAAACGCTTCCTTCTCC..................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................AACGCTTCCTTCTCCCTGTT.............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

A-CGGA--CAGA--------CG--------GACGGACAGACGAACATGGCCAGATCGACTCGGCTATTTATCCTGATCAAGAATATACATATATACTTTATATGGTCGAACACGTTTCCTTCTGCCTGTTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_811

scaffold_6473:16724585-16724735 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.1	-11.8	-11.72