dmo_807

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAATCAATCGAGTGCGAAAGTTGAAAGAGAAAGGAGAGACGTCAAGAAAAGTGAAAAATTGTTATTGGAATAAAGCCTGCGAGCTAAGTATGGAAAATGGCTCTTTCGACGGAGGGGGGCTCATGACAATTCTTCAAGTCAGCCACGTTGACCGTGCGTCGCTGTCGAATTCCCAGTCTTTTAGTCGCACTAATTTTGCAGCTACGAATTTTACTACTTTGTACGGTTCATCATACCGAGGGCCCAGCTTA ************************************************........((((.(((((.........(((((.(((((...(((...(((....((((((....((.(((.((((............((((((...)))))))))).))).))))))))...))).))))))))))))))))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head
..........................................................................GCCGGGTAGCTAAGTATGGA.............................................................................................................................................................	20	3	4	2.75	11	6	5	0
..........................................................................GCCGGGTAGCTAAGTATGG..............................................................................................................................................................	19	3	7	2.29	16	10	5	1
.........................................................................AGCCGGGTAGCTAAGTATGGA.............................................................................................................................................................	21	3	2	1.50	3	1	2	0
.............................AAAGGAGAGACGTCAAGAAAA.........................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0
...................................................................................................................................................................................................................TACTACTTTGTACGGTTCATCATACCGAG...........	29	0	1	1.00	1	1	0	0
..........................................................................GCCGGGTAGCTAAGTATG...............................................................................................................................................................	18	3	20	0.95	19	16	2	1
...........................................................................CCGGGTAGCTAAGTATGGA.............................................................................................................................................................	19	3	6	0.50	3	3	0	0
...........................................................................CCGGGTAGCTAAGTATGG..............................................................................................................................................................	18	3	19	0.11	2	2	0	0
.........................................................................CGCCTGGTAGCTAAGTATG...............................................................................................................................................................	19	3	15	0.07	1	1	0	0
.........................................................................AGCCGGGTAGCTAAGTATG...............................................................................................................................................................	19	3	16	0.06	1	1	0	0
............................................................................................................CCTAAGGGGGGCTCATGA.............................................................................................................................	18	3	20	0.05	1	1	0	0

CTTAGTTAGCTCACGCTTTCAACTTTCTCTTTCCTCTCTGCAGTTCTTTTCACTTTTTAACAATAACCTTATTTCGGACGCTCGATTCATACCTTTTACCGAGAAAGCTGCCTCCCCCCGAGTACTGTTAAGAAGTTCAGTCGGTGCAACTGGCACGCAGCGACAGCTTAAGGGTCAGAAAATCAGCGTGATTAAAACGTCGATGCTTAAAATGATGAAACATGCCAAGTAGTATGGCTCCCGGGTCGAAT ************************************************........((((.(((((.........(((((.(((((...(((...(((....((((((....((.(((.((((............((((((...)))))))))).))).))))))))...))).))))))))))))))))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
....................................................................................................................................................................AGCTTAAGGGTCAGAAAATCA..................................................................	21	0	1	1.00	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:16299506-16299756 -	dmo_807	GAATCAATCGAGTGCGAAAGTTGAAAGAGAAAGGAGAGACGTCAAGAAAAGTGAAAAATTGTTATTGGAATAAAGCCTGCGAGCTAAGTATGGAAAATGGCTCTTTCGACGGAGGGGGGCTC------ATGACAATTCTTCAAGTCAGC-----------------------------CACGTTGACCGTGCGTCGCTGTCGAATTCCCAG-TCTTTTAGTCGCACTAATTTTGCAGCTACGAATTTTACTACTTT----GTACGGTTCATCATACCGAGGGCCCAGCTTA
droVir3	scaffold_12941:448537-448695 -		GGC-------------TCTTC------------------------------------------------------------------------------------CGCG------------------TACGGT------------GGCGAGTTCCGGGCGAATGGTGCCTCCACCTTCTT-GTTGGCCACCCTCTTCTTGCGGTCGTCTGATTTCACCAGCCGCACAATATTGGGGGATATGAATTTGACGACTTT----GTAGGGGCCGTCAAATTTGGGTGCCAACTTT
droWil2	scf2_1100000004521:5530147-5530239 +		GCG-------------AAAGTGCAAAGAGAATTGAGAAACGTAAAGGCAAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAATGAAACTTAATCATTGCTTGAATTGGGCCA-GTGGAACACG------TGGGG
dp5	Unknown_singleton_2856:2182-2331 +		TCG-------------ATGGTGAGGG-----------------------------------------------------------------------------------------TGTGCTC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGCCGTTCGTCGTTGTATTCCCGGCTGCTTCTGGAGTCGTGCTATGGTGGGTGGAATAAAATTAATTACTTT----GTAAGGCCCCTCATATTTGGGAGACAGTTTG
droPer2	scaffold_179:27053-27208 -		TCG-------------CTGGTGGGGG-----------------------------------------------------------------------------------------TGTGCTCGTGGTCGTGGTAGGCCTTGAGGTCGGC-----------------------------TAGTTCGGCCGTTCGTCGTTGTCTTCCCGGATACTTCTGGAGTCGTGCTATAGTGGGGGAAATAAATTTTACTACTTT----GTAAGGCCCCTCATATTTGGGAGCCAGTTTG
droAna3	scaffold_13337:9660265-9660324 -		GCA-------------AAAATAGAAAGAGATAGCAGAGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGAAGAA---------------------AAATGTGATGGTTA---------------------------TTTAAATAA
droBip1	scf7180000396364:26166-26252 -		GTTTGTCTCTTGCTTTAAGGTTTGAAACGAAGTGAGTTGCGGTAGGAAAATAAGAAAAGTGCTTTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA-------------GGAATGCAAGCGAA
droKik1	scf7180000301468:782-930 -		CGG-------------CTGTG------------------------------------------------------------------------------------GGTG---------GCTCGTC---ATCGTCGGTATCCTCGTCCCC-----------------------------TAGTCCGGCTGTGCGTCGTCGTCGATTCCCAGGTACCTGTAATTGTAAAAGATTAGGAGACAGGATCTTGTGAACTTT----GTATGGTGCATCGTATTTGGCCGCCAGCTTT
droFic1	scf7180000454074:785-917 +		CTC-----------------------------------------------------------------------------------------------------------------------------GTGGAATGCCTTGAGATCAGC-----------------------------CAGGCCGGCGGTTCGTCTGCGTCTGGTCCTTGAGTCCTGGAGTCGGACGATATTCTGAGCGATGAACTTGACGACCTT----GAAGGGCCCAACGAAGCGTGGGGCCAGCTTG
droEle1	scf7180000486726:62046-62188 +		GAG-------------TGGCT------------------------------------------------------------------------------------TCTG------------------AGTAGTAATGTTTGAGCTGGGA-----------------------------TATGTTGGCGATCCGCCGCCGTCGATCTCCGGGGCGTTGCAGGCGTACCAAGTTCGGAGATGTGAACTTCGTAACGGT----GTAAGGGCCGTCTTACTTGGCAGCAAGTTTG
droRho1	scf7180000777586:7040-7189 -		ATG-------------GCTGCT-----------------------------------------------------------------------------------TCTCGGGAG---------G---TCTGGTACTCCTTAAGGTCGGG-----------------------------TAGGCAGGCCGTCAGCCGCTTCCGAGAGCCTTTTAACTGGAGTCGCACCACGTTTGGCGATAGAAATTTGATGACCTT----GTATGGCCCTGTATATTTTGGGGCCAGTTTG
droBia1	scf7180000301598:32026-32098 +		TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGCACTATGGTGGGAGAAAAGAACTTATTTACTTT----GTACGGGCCTTCGTACTTGGGTGCTAGCTTA
droTak1	scf7180000414550:11284-11426 +		TGG-------------CTTCT------------------------------------------------------------------------------------TCGG------------------AGTAGTAGGGTTTCAGCTGTGC-----------------------------GATGTTGGCAGATCGTCGCTTTCTTTCTCCCGGACGTCTTAAGAGAACCAGATTAGGTGATACGAACTTGAAGACAAC----ATAGGGCCCGTCGTACTTAGGGGCCAATTTG
droEug1	scf7180000409707:128676-128720 -		AAG-------------GAAAA------------------------------CGAAAAATTGTTATTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCGACA------------GCAGAGCTAA
droSim2	x:20202506-20202552 +		C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTCCACAACCTG----GTACGGCCCATCGAACCTCAGATCCAGCTTG
droSec2	scaffold_8068:1511-1556 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCTTTATCGT----GTACGGCCCGTAAAATCTTGGGGCCAATTTT
droYak3	v2_chrUn_1752:12315-12420 -		CTG-------------ATGCT----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGTACCGTGCGTTCCTTTTTGTTCGTTCGGTGGC---------------------------GAATCACAATTTG----GTACGGTCCATCGAACCTCGGAGCTAGTTTG
droEre2	scaffold_4929:22017956-22018088 +		CTG-------------ATG----------------------------------------------------------------------------------------------------------------ATAGGGCTTCAGATGATG-----------------------------GATGCCAGTCGTACGGCGGCGGCGACTCCTGGTATCCTGTAGCCTTACTATGTTCGGCGAGACGAACTTCACGACCCG----ATAGGGTCTATCGTACCTCGCAGTCAGTTTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GAATCAATCGAGTGCGAAAGTTGAAAGAGAAAGGAGAGACGTCAAGAAAAGTGAAAAATTGTTATTGGAATAAAGCCTGCGAGCTAAGTATGGAAAATGGCTCTTTCGACGGAGGGGGGCTC------ATGACAATTCTTCAAGTCAGC-----------------------------CACGTTGACCGTGCGTCGCTGTCGAATTCCCAG-TCTTTTAGTCGCACTAATTTTGCAGCTACGAATTTTACTACTTT----GTACGGTTCATCATACCGAGGGCCCAGCTTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................AAAGGAGAGACGTCAAGAAAA.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................TACTACTTT----GTACGGTTCATCATACCGAG...........	29	1	1.00	1	1	0	0	0	0	0

droVir3

GGC-------------TCTTC------------------------------------------------------------------------------------CGCG------------------TACGGT------------GGCGAGTTCCGGGCGAATGGTGCCTCCACCTTCTT-GTTGGCCACCCTCTTCTTGCGGTCGTCTGATTTCACCAGCCGCACAATATTGGGGGATATGAATTTGACGACTTT----GTAGGGGCCGTCAAATTTGGGTGCCAACTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGG..........	24	20	5.75	115	0	0	1	0	1	0	1	0	0	0	1	0	53	0	0	0	0	0	0	0	1	0	0	0	12	0	14	0	0	0	0	0	0	1	0	13	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGT.........	25	20	3.40	68	0	0	0	0	0	0	1	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	4	9	1	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGG...........	23	20	3.15	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	13	3	0	0	0	0	0	1	0	9	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTGC.......	27	20	2.55	51	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	6	0	20	0	1	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATTGGG........................................................	27	20	2.05	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	1	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTG........	26	20	1.85	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	3	0	0	0	0	0	0	0	14	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GGGGATATGAATTTGACGACTTT----GT.............................	25	20	1.60	32	9	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................CGAATGGTGCCTCCACCTTCTT-GTT...........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CGAATGGTGCCTCCACCTTCTT-GT............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTCACCAGCCGCACAATATTGGGGGA.....................................................	27	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTG............	22	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	2	1	0	0	0	0	5	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACGAC......................................	25	20	0.75	15	0	0	0	0	6	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACGACTT....................................	27	20	0.50	10	0	0	0	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATAT............................................................	23	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCTGATTTCACCAGCCGCACAATAT............................................................	25	20	0.35	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GGGATATGAATTTGACGACTTT----GT.............................	24	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTT........	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTGCCA.....	29	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACG........................................	23	20	0.25	5	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATTGGGG.......................................................	28	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACGACTTT----...............................	28	20	0.25	5	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TATGAATTTGACGACTTT----GTAGGGGC.......................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAAT..............................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCTGATTTCACCAGCCGCACAATATTG..........................................................	27	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACGA.......................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GCCACCCTCTTCTTGCGGTCGTCTGA................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATT...........................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATTGG.........................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCGGTCGTCTGATTTCACCAGCC.....................................................................	24	20	0.15	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGACGACT.....................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AATTTGACGACTTT----GTAGGGG........................	21	20	0.15	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GGT------------GGCGAGTTCCGGGCGAATC...............................................................................................................................	22	18	0.11	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TATGAATTTGACGACTTT----GTAGGG.........................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................TTCTTGCGGTCGTCTGATTTCACCAGC......................................................................	27	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGA..........................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGCGGTCGTCTGATTTCACCAGCCG....................................................................	26	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CACCCTCTTCTTGCGGTCGTCTGA................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTGT.......	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................T-GTTGGCCACCCTCTTCTTGCGGTCG.....................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGCCACCCTCTTCTTGCGGTCGTC...................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TCGTCTGATTTCACCAGCCG....................................................................	20	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCTTCTTGCGGTCGTCTGATTTCAC..........................................................................	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................T------------GGCGAGTTCCGGGCGAATGGT.............................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CGGT------------GGCGAGTTCCGGGCGAAT................................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CGAGTTCCGGGCGAATGGTGT...........................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CGAGTTCCGGGCGAATGGTGC...........................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TGAATTTGACGACTTT----GTAGGGGCCGT....................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................ATGAATTTGACGACTTT----GTAGGGGC.......................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTA........	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAA................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCGGTCGTCTGATTTCACCAGCCGCA..................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................TTTCACCAGCCGCACAATATTGGGGG......................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCACCAGCCGCACAATATTGGG........................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCTTGCGGTCGTCTGATTTCACCAGC......................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGACGACTTT----GTAGGGGCCG.....................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAA...............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAAT...............	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TATGAATTTGACGACTTT----GTAG...........................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ATATGAATTTGACGACTTT----GTAGGGG........................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TAGGGGCCGTCAAATTTGGGTG........	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGT..........	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATTGGGT.......................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GTCGTCTGATTTCACCAGCCGCACAAT..............................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................CTTC------------------------------------------------------------------------------------CGCG------------------TACGGT------------GGCGAG............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GCCGCACAATATTGGGGGATATGAAT..............................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTT----GTAGGGGCCGTCAAATTTGGG..........	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GGGGATATGAATTTGACGACTTT----GTAGGGGCCG.....................	33	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GGGGATATGAATTTGACC........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCTGATTTCACCAGCCGCACAATATTGAA........................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATTGGGGGATATGAATTTGAC.........................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGACA.......	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAGGGGCCGTCAAATTTGGGTGCC......	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TGAATTTGACGACTTT----GTAGGGGCCG.....................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGCGGTCGTCTGATTTCACCAGCCGC...................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GAATTTGACGACTTT----GTAGGGG........................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GGGGATATGAATTTGACGACTTT----GTC............................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCTGATTTCACCAGCCGCACA................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................ATGAATTTGACGACTTT----GT.............................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGCCACCCTCTTCTTGCGGTCGT....................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGCGGTCGTCTGATTTCACCAGC......................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TATGAATTTGACGACTTT----GTAGGGG........................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACA................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TTGGGGGATATGAATTTGACGACTTT----...............................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCACCAGCCGCACAATATTGGGGGATA...................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATATTGGGGGATATGAATTTGACGACT.....................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GGATATGAATTTGACGACTTT----GT.............................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ATATGAATTTGACGACTTT----GT.............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGCGGTCGTCTGATTTCACCAGCC.....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGATTTCACCAGCCGCACAATATTGTC........................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TATGAATTTGACGACTTT----GTAGGGGCC......................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGGGCCGTCAAATTTGGGTG........	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGGGGGATATGAATTTGACGAC......................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCGGTCGTCTGATTTCACCAGC......................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTCACCAGCCGCACAATATTGGGG.......................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTCACCAGCCGCACAATAT............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CACCCTCTTCTTGCGGTCGTCTGATTT.............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCTTCTTGCGGTCGTCTGATTTCACCAGC......................................................................	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GGGGATATGAATTTGACG........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACTTT----GTAGGGGCCGTCAAATTTGGG..........	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGCACAATATTGGGGGATATGAA...............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CGACTTT----GTAGGGGCCGTCAAATC..............	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGGGGGATATGAATTTGACGACTTT----GT.............................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACCAGCCGCACAATATTGGGGGA.....................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTCACCAGCCGCACAATATTGGGGGAT....................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

GCG-------------AAAGTGCAAAGAGAATTGAGAAACGTAAAGGCAAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAATGAAACTTAATCATTGCTTGAATTGGGCCA-GTGGAACACG------TGGGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

TCG-------------ATGGTGAGGG-----------------------------------------------------------------------------------------TGTGCTC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGCCGTTCGTCGTTGTATTCCCGGCTGCTTCTGGAGTCGTGCTATGGTGGGTGGAATAAAATTAATTACTTT----GTAAGGCCCCTCATATTTGGGAGACAGTTTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------.................................................................................................................	23	19	3.89	74	0	33	0	0	1	0	2	36	2	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGC........................................................................................................	26	19	2.89	55	0	37	10	0	0	0	0	8	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGG.........................................................................................................	25	19	2.47	47	0	45	0	0	1	0	0	0	1	0
.........................................................................................................................................................................................................................GAGTCGTGCTATGGTGGGTGGAA...................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGG...............................................................................................................................................	22	19	1.79	34	0	28	0	0	0	0	0	3	3	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTCATAT...............	26	9	1.33	12	0	11	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATATT..............	23	17	1.12	19	0	16	1	0	2	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCC...........................................................................................................	23	19	1.05	20	0	17	2	0	1	0	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTATTCCCGGCTGCTT.............................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTATTCCCGGCTGCT..............................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TGAGGG-----------------------------------------------------------------------------------------TGTGCTC------GTGGTAGGCC.........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................CTC------GTGGTAGGCCTTGAGGTCGGC-----------------------------.................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAGTCGTGCTATGGTGGGTG......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TGAGGG-----------------------------------------------------------------------------------------TGTGCTC------GTGGTAGGCCTTG......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTGTA..........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTATTCCCGGCTG................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TCATATTTGGGAGACAGTTTG	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................TGCTC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TA...............................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T----GTAAGGCCCCTCATATTTGGGAGA.......	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TT----GTAAGGCCCCTCATATTTGGGAGA.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCTATGGTGGGTGGAATAAAATTAA..........................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTCATA................	25	9	1.00	9	0	8	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAGTCGTGCTATGGTGGGTGGAAT..................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GTAAGGCCCCTCATATTTGGGAGA.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TAAGGCCCCTCATATTTGGGAGA.......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCG..........................................................................................................	24	19	1.00	19	0	19	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCGTGCTATGGTGGGTGGAATA.................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCGTGCTATGGTGGGTGGAATAA................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTGTAA.........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................TGCTC------GTGGTAGGCCTTGAGGTCGGC-----------------------------.................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................TGCTATGGTGGGTGGAATAAA...............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TCATATTTGGGAGACAGTTT.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTATTCCCGGCTGCTTC............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTCCGGCCGTTCGTCGTTG............................................................................................	26	20	0.95	19	0	19	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGT........................................................................................................	26	19	0.95	18	0	16	0	0	2	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCC.....................	20	9	0.89	8	0	7	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATATTTG............	25	16	0.81	13	0	12	1	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTG............................................................................................	21	20	0.80	16	0	15	0	0	0	0	0	1	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTC............................................................................................................	22	19	0.79	15	0	14	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGG............................................................	22	16	0.75	12	0	6	0	0	0	0	0	4	2	0
.............................................................................................................................................................................................................................................................TTT----GTAAGGCCCCTCATATTTGGGAG........	26	18	0.72	13	0	9	0	0	4	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTCATATT..............	27	9	0.67	6	0	5	0	0	0	0	0	0	1	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------T................................................................................................................	24	19	0.58	11	0	3	2	0	0	0	0	5	1	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTC.................................................................................................................................................	20	19	0.47	9	0	7	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................TTACTTT----GTAAGGCCCCTCATATT..............	24	10	0.40	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCTGGAGTCGTGCTATGGTGG.........................................................	21	16	0.38	6	0	6	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGCCGT.....................................................................................................	29	18	0.33	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCG................................................................................................................................................	21	19	0.32	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGT..................................................................................................................................................	19	20	0.30	6	0	4	1	0	1	0	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTCCGGCCGTTCGTCGTT.............................................................................................	25	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TAAGGCCCCTCATATTTGGGAG........	22	18	0.28	5	0	4	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGT...........................................................	23	16	0.25	4	0	3	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATG.............................................................	21	16	0.25	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGTG..........................................................	24	16	0.25	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAAGGCCCCTCATATTTGGGA.........	25	20	0.25	5	0	4	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTAATTACTTT----GTAAGGCCCCTCATAT...............	27	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T----GTAAGGCCCCTCATATTTGGGAG........	24	18	0.22	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTACTTT----GTAAGGCCCCTCATATTTG............	26	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATAT...............	22	19	0.21	4	0	2	1	0	1	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTT.............................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAGTCGTGCTATGGTGGG........................................................	18	16	0.19	3	0	2	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TCTGGAGTCGTGCTATGGT...........................................................	19	17	0.18	3	0	0	0	0	0	0	0	3	0	0
..............................................................................................................................................................................................................................................................TT----GTAAGGCCCCTCATATTTGGGAG........	25	18	0.17	3	0	2	0	0	1	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTC............................................................................................................	21	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTCC...........................................................................................................	22	19	0.16	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTT............................................................................................................	22	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................TGGTAGGCCTTGAGGTCGGC-----------------------------TT...............................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGG...................................................................................................................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTGT...........................................................................................	22	20	0.15	3	0	2	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................T----GTAAGGCCCCTCATATTTGGGA.........	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................TCCGGCCGTTCGTCGTTG............................................................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGT..............................................................................................	19	20	0.15	3	0	2	0	0	1	0	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTCCGGCCGTTCGTCGT..............................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCTGGAGTCGTGCTATGGTGGG........................................................	22	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGTGG.........................................................	25	15	0.13	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................TTCTGGAGTCGTGCTATGGTG..........................................................	21	16	0.13	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATATTT.............	24	17	0.12	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGTGA.........................................................	25	17	0.12	2	0	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................TCTGGAGTCGTGCTATGGTG..........................................................	20	17	0.12	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AATTACTTT----GTAAGGCCCCTCATAT...............	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTC...................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TAG..............................................................................................................	26	18	0.11	2	0	1	0	0	0	0	0	1	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TAGT.............................................................................................................	27	18	0.11	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................TTAATTACTTT----GTAAGGCCCC.....................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTCA..................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCT.....................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AATTACTTT----GTAAGGCCCCTCA..................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTAATTACTTT----GTAAGGCCCCTCA..................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AATTACTTT----GTAAGGCCCCTCATA................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGCCG......................................................................................................	28	18	0.11	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TAATTACTTT----GTAAGGCCCCTCAA.................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGT.........................................................................................................	25	19	0.11	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................GTGGTAGGCCTTGAGGTCGGC-----------------------------.................................................................................................................	21	19	0.11	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGT-----------------------------.................................................................................................................	23	19	0.11	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------A................................................................................................................	24	19	0.11	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGT...............................................................................................................................................	22	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................C------GTGGTAGGCCTTGAGGTCGGC-----------------------------.................................................................................................................	22	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................C------GTGGTAGGCCTTGAGGTC.................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................GTGGTAGGCCTTGAGGTCGG...............................................................................................................................................	20	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................TGGTAGGCCTTGAGGTCGGC-----------------------------T................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTACTTT----GTAAGGCCCCTCATAA...............	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACTTT----GTAAGGCCCCTCATATTTGG...........	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTA.............................................................................................	20	20	0.10	2	0	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................TTACTTT----GTAAGGCCCCTCATATTA.............	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGTCCGGCCGTTCGTCGTTG............................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................T----GTAAGGCCCCTCATATTTGG...........	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CTTCTGGAGTCGTGCTATGGTGG.........................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCTGGAGTCGTGCTATGGTGG.........................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGGAGTCGTGCTATGGTGGG........................................................	21	15	0.07	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGTAT.........................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCTGGAGTCGTGCTATGGTA..........................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCTTCTGGAGTCGTGCTATGGT...........................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCTGGAGTCGTGCTATGGT...........................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCTTCTGGAGTCGTGCTATGGTG..........................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGGAGTCGTGCTATGGTGG.........................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCTTCTGGAGTCGTGCTATGGTA..........................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCTGGAGTCGTGCTATGGTGA.........................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATATTA.............	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCTGGAGTCGTGCTATGG............................................................	18	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGGAGTCGTGCTATGGTGGT........................................................	20	18	0.06	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................CTGGAGTCGTGCTATGGTAA.........................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GTAAGGCCCCTCATATTTGGGAG........	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAAGGCCCCTCATATTTGGGAGT.......	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAGTCGTGCTATGGTGGT........................................................	18	18	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGTA........................................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGC...............................................................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGGC-----------------------------TA...............................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATA................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................C------GTGGTAGGCCTTGAGGTCGGT-----------------------------A................................................................................................................	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTCCGT.........................................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATAAA..............	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTCCGGT........................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGCC.......................................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGTA.......................................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTCCGG.........................................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGTT.......................................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCGA...............................................................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCT...........................................................................................................	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTCA................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCT..........................................................................................................	24	19	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................AGGCCTTGAGGTCGGC-----------------------------TAGTCCGGC........................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGT.............................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCAT.................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................C------GTGGTAGGCCTTGAGGTCGT...............................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTA............................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGTCCGGA........................................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGTCCGGCCGTTCGTCGTTGT...........................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGTCCGGCCGTTCGTCGT..............................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTT----GTAAGGCCCCTCATATT..............	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAGA.............................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGTA.................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTAA...........................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TGGTAGGCCTTGAGGTCGTT-----------------------------.................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CGGC-----------------------------TAGTCCGGCCGTTCGT.................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACTTT----GTAAGGCCCCTCATATA..............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TGGTAGGCCTTGAGGTCGGC-----------------------------TA...............................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TAAGGCCCCTCATATTTGGA..........	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTCCGGCCGTTCGTC................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTTGA...........................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................CCTTGAGGTCGGC-----------------------------TAGTCC...........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................CGGC-----------------------------TAGTCCGGCCGTTCGTCG...............................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTT----GTAAGGCCCCTCATATTTGG...........	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTCCGGCCGTTCGTCGAAA............................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................C-----------------------------TAGTCCGGCCGTTCGTCGTTG............................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACTTT----GTAAGGCCCCTCATATT..............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CGGC-----------------------------TAGTCCGGCCGTTCGTCGTT.............................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAGGCCTTGAGGTCGGC-----------------------------TAG..............................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCGTAAA...........................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TC------GTGGTAGGCCTTGAGGC..................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................TAGTCCGGCCGTTCGTCG...............................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TT----GTAAGGCCCCTCATATTTGGGA.........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGTCCGGCCGTTCGTCGTTAA...........................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTT----GTAAGGCCCCTCATATTTGGG..........	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCG-------------CTGGTGGGGG-----------------------------------------------------------------------------------------TGTGCTCGTGGTCGTGGTAGGCCTTGAGGTCGGC-----------------------------TAGTTCGGCCGTTCGTCGTTGTCTTCCCGGATACTTCTGGAGTCGTGCTATAGTGGGGGAAATAAATTTTACTACTTT----GTAAGGCCCCTCATATTTGGGAGCCAGTTTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................TCCCGGATACTTCTGGAGTCGTGCT................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTCTTCCCGGATACTT.............................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTCTTCCCGGATACTTCT...........................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................TCGGC-----------------------------TAGTTCGGCCGTTCGTCGTTG............................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................TGCTCGTGGTCGTGGTAGGCCTTGAG....................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
....................................................................................................................GTGCTCGTGGTCGTGGTAGGCCTT.......................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
.....................................................................................................................TGCTCGTGGTCGTGGTAGGCCTTGT.....................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0
.....................................................................................................................TGCTCGTGGTCGTGGTAGGCCTTG......................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................TACTTT----GTAAGGCCCCTCATATTTG............	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................TCGTCGTTGTCTTCCCGGA..................................................................................	19	20	0.05	1	0	1	0	0	0	0

droAna3

GCA-------------AAAATAGAAAGAGATAGCAGAGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGAAGAA---------------------AAATGTGATGGTTA---------------------------TTTAAATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GTTTGTCTCTTGCTTTAAGGTTTGAAACGAAGTGAGTTGCGGTAGGAAAATAAGAAAAGTGCTTTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA-------------GGAATGCAAGCGAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGG-------------CTGTG------------------------------------------------------------------------------------GGTG---------GCTCGTC---ATCGTCGGTATCCTCGTCCCC-----------------------------TAGTCCGGCTGTGCGTCGTCGTCGATTCCCAGGTACCTGTAATTGTAAAAGATTAGGAGACAGGATCTTGTGAACTTT----GTATGGTGCATCGTATTTGGCCGCCAGCTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTC-----------------------------------------------------------------------------------------------------------------------------GTGGAATGCCTTGAGATCAGC-----------------------------CAGGCCGGCGGTTCGTCTGCGTCTGGTCCTTGAGTCCTGGAGTCGGACGATATTCTGAGCGATGAACTTGACGACCTT----GAAGGGCCCAACGAAGCGTGGGGCCAGCTTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAG-------------TGGCT------------------------------------------------------------------------------------TCTG------------------AGTAGTAATGTTTGAGCTGGGA-----------------------------TATGTTGGCGATCCGCCGCCGTCGATCTCCGGGGCGTTGCAGGCGTACCAAGTTCGGAGATGTGAACTTCGTAACGGT----GTAAGGGCCGTCTTACTTGGCAGCAAGTTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATG-------------GCTGCT-----------------------------------------------------------------------------------TCTCGGGAG---------G---TCTGGTACTCCTTAAGGTCGGG-----------------------------TAGGCAGGCCGTCAGCCGCTTCCGAGAGCCTTTTAACTGGAGTCGCACCACGTTTGGCGATAGAAATTTGATGACCTT----GTATGGCCCTGTATATTTTGGGGCCAGTTTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGCACTATGGTGGGAGAAAAGAACTTATTTACTTT----GTACGGGCCTTCGTACTTGGGTGCTAGCTTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGG-------------CTTCT------------------------------------------------------------------------------------TCGG------------------AGTAGTAGGGTTTCAGCTGTGC-----------------------------GATGTTGGCAGATCGTCGCTTTCTTTCTCCCGGACGTCTTAAGAGAACCAGATTAGGTGATACGAACTTGAAGACAAC----ATAGGGCCCGTCGTACTTAGGGGCCAATTTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAG-------------GAAAA------------------------------CGAAAAATTGTTATTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCGACA------------GCAGAGCTAA	Size	Hit Count	Total Norm	Total
No Reads

droSim2

C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTCCACAACCTG----GTACGGCCCATCGAACCTCAGATCCAGCTTG

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCTTTATCGT----GTACGGCCCGTAAAATCTTGGGGCCAATTTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCTTTATCGT----GTACGGCC.......................	23	20	0.05	1	1	0	0	0
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCTTTATCGT----GTACGGCCCG.....................	25	20	0.05	1	1	0	0	0

droYak3

CTG-------------ATGCT----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGTACCGTGCGTTCCTTTTTGTTCGTTCGGTGGC---------------------------GAATCACAATTTG----GTACGGTCCATCGAACCTCGGAGCTAGTTTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................TG----GTACGGTCCATCGAACCTCGGAGC.......	26	20	2.00	40	0	0	2	0	0	0	0	0	0	0	38
......................................................................................................................................................................................................................................................TCACAATTTG----GTACGGTCCATCGAACC..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTTTAGGTCGCT-----------------------------GACATGTACCG......................................................................................................	25	20	0.70	14	0	14	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTG----GTACGGTCCATCGAACCTCGGAGC.......	27	20	0.70	14	0	14	0	0	0	0	0	0	0	0	0
....................T----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGTACC.......................................................................................................	27	20	0.70	14	0	14	0	0	0	0	0	0	0	0	0
....................T----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGTAC........................................................................................................	26	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGCGTTCCTTTTTGTTCG....................................................................................	18	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7
.......................................................................................................................................................................................................................................................CACAATTTG----GTACGGTCCATCGAACC..............	26	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0
....................T----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGT..........................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GCTGTTTTAGGTCGCT-----------------------------GACATGTACCG......................................................................................................	27	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTTTAGGTCGCT-----------------------------GACATGTACC.......................................................................................................	24	20	0.15	3	0	2	1	0	0	0	0	0	0	0	0
......................................................................................................................................CTGTTTTAGGTCGCT-----------------------------GACATGTACCG......................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTTAGGTCGCT-----------------------------GACATGTACCGTGCG..................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTTTAGGTCGCT-----------------------------GACATGTACCGTG....................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TACGGTCCATCGAACCTCGGAGCTAG....	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................T----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATG...........................................................................................................	23	20	0.10	2	0	0	1	0	1	0	0	0	0	0	0
....................T----------------------------------------------------------------------------------------------------------------GCTGTTTTAGGTCGCT-----------------------------GACATGTA.........................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TG----GTACGGTCCATCGAACCTCGGAG........	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GCTGTTTTAGGTCGCT-----------------------------GACATGTA.........................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCCATCGAACCTCGGAGCTAGTTT.	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GCTGTTTTAGGTCGCT-----------------------------GACATGTACC.......................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TACGGTCCATCGAACCTCGGAGCTA.....	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TG----GTACGGTCCATCGAACCTCGGA.........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CGGTCCATCGAACCTCGGAGCTAGTT..	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................TCGCT-----------------------------GACATGTACCGTGCGTTCCT.............................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GTACGGTCCATCGAACCTCGGAGC.......	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTTAGGTCGCT-----------------------------GACATGTACCGTGC...................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTG----GTACGGTCCATCGAACCTCGG..........	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................T-----------------------------GACATGTACCGTGCGTTCCTTTTTGT.......................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................T-----------------------------GACATGTACCGTGCGTTCCTTTTT.........................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACAATTTG----GTACGGTCCATCGAA................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTCGCT-----------------------------GACATGTACCGTGCGTTCCTT............................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CTG-------------ATG----------------------------------------------------------------------------------------------------------------ATAGGGCTTCAGATGATG-----------------------------GATGCCAGTCGTACGGCGGCGGCGACTCCTGGTATCCTGTAGCCTTACTATGTTCGGCGAGACGAACTTCACGACCCG----ATAGGGTCTATCGTACCTCGCAGTCAGTTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_807

scaffold_6473:16299556-16299706 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads