ID:

dmo_799

 Coordinate:

scaffold_6473:15713120-15713389 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-85.9 -85.9 -85.9

Flybase annnotation

exon [dmoj_GLEANR_16669:2]; exon [dmoj_GLEANR_16669:1]; CDS [Dmoj\GI15970-cds]; CDS [Dmoj\GI15970-cds]; intron [Dmoj\GI15970-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
(CAG)nSimple_repeatSimple_repeat+
mature
  1. dmo_3003  scaffold_6328:3370967-3370986 +
  2. dmo_799  scaffold_6473:15713174-15713193 +
  3. scaffold_6500:5140328-5140347 +
  4. scaffold_6500:21687935-21687954 +
  5. scaffold_6500:21793368-21793387 +
  6. scaffold_6500:25271937-25271956 +
  7. scaffold_6500:25794578-25794597 +
  8. scaffold_6500:30502944-30502963 +
  9. scaffold_6540:1687804-1687823 +
  10. scaffold_6540:3428815-3428834 +
  11. scaffold_6540:13891806-13891825 +
  12. scaffold_6540:16366826-16366845 +
  13. scaffold_6540:16926572-16926591 +
  14. scaffold_6540:24186244-24186263 +
  15. scaffold_6540:24376924-24376943 +
  16. scaffold_6540:24384943-24384962 +
  17. scaffold_6680:345390-345409 +
  18. scaffold_6680:3099006-3099025 +
  19. scaffold_6680:14739918-14739937 +
  20. scaffold_6680:19171423-19171442 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGACAAGGCCAAGGGGAATGGCTTCCTGTGGCTTGGACTGCGCTGCCGAGTGAGCTGAATAAAAAGCGGACTTGTGAGTGTGTGAGTGTGCGAGTGTGTTTGTGTGTGTGCGTGTGCGTGTGCTGCTGCTGCCAATGCCAATGACATTGGCTGAGCTCGCACTGCAACTGCAACATGCTAAAACATTGGTCAACTGCCACGTACTCAGCAGTCAATGGCCAGCTGACCGCACTCCCGACAATAACAGCTAAAAAACCAGTGCAAGGTGCAACCAAAAATGGCTTTTATAGCTGCCAGTTGAGAGCAGTAAATTCAATAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
**************************************************((.(((((........((.((((..(((((((((((((..((.(((((....((((((.((((..((((.((((.(((...(((((((.......)))))))..)))..))))))))..))))))))))....))))).))..)))..))))))))))..))))....))))))).))....(((.((((.....((((((.(((((((......(((...))).....))).)))).))))))...)))).)))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
............................................................................................................................................AATGACAATGGCTGAGCGC................................................................................................................................................................................................................... 19 2 7 0.14 1 0 1 0 0
................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCAGCA........................ 26 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCAGCA............ 24 0 20 0.05 1 0 0 0 1
..............................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAGCAGC............................ 24 0 20 0.05 1 0 1 0 0
........................................................................................................GTGTGTGCGTGTGCGTGTGC...................................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................CAATAGCAACAGCAGCAGCA.................................... 20 0 20 0.05 1 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAG............................. 20 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAGCAGC.... 26 0 20 0.05 1 0 0 1 0
........................................................................................................................................................................................................................................................................................................................GTCAATAGCCACAGCAGCAGC..................................... 21 2 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGC....... 19 0 20 0.05 1 0 0 1 0
........................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAACAGCAGCA............... 27 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTCTGTTCCGGTTCCCCTTACCGAAGGACACCGAACCTGACGCGACGGCTCACTCGACTTATTTTTCGCCTGAACACTCACACACTCACACGCTCACACAAACACACACACGCACACGCACACGACGACGACGGTTACGGTTACTGTAACCGACTCGAGCGTGACGTTGACGTTGTACGATTTTGTAACCAGTTGACGGTGCATGAGTCGTCAGTTACCGGTCGACTGGCGTGAGGGCTGTTATTGTCGATTTTTTGGTCACGTTCCACGTTGGTTTTTACCGAAAATATCGACGGTCAACTCTCGTCATTTAAGTTATCGTTGTCGTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGTCGT
**************************************************((.(((((........((.((((..(((((((((((((..((.(((((....((((((.((((..((((.((((.(((...(((((((.......)))))))..)))..))))))))..))))))))))....))))).))..)))..))))))))))..))))....))))))).))....(((.((((.....((((((.(((((((......(((...))).....))).)))).))))))...)))).)))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V049
head
..........................................................................................................................................................................................................................CGGTCGATTGGCGTGACGGC.................................................................................................................................... 20 2 1 5.00 5 2 3
.........................................................................................................................................................................................................................CCGGTGGATTGGCGTGACGGC.................................................................................................................................... 21 3 2 1.00 2 1 1
............................................................................................................................................................................................................................................................................TGTTGGTTTTTACCGAGACTAT................................................................................ 22 3 1 1.00 1 0 1
......................................................................................................................................................................................................................TTTCCGGTCGATTGGCGTGACGGC.................................................................................................................................... 24 3 1 1.00 1 0 1
.........................................................................................................................................................................................................................CCGTTCGATTGGCGTGACGGC.................................................................................................................................... 21 3 1 1.00 1 0 1
.........................................................................................................................................................................................................................CCGGTCTATTGGCGTGACGGC.................................................................................................................................... 21 3 3 1.00 3 3 0
.........................................................................................................................................................................................................................CCGGTCGAGTGGCGTGCGGGC.................................................................................................................................... 21 2 1 1.00 1 1 0
.........................................................................................................................................................................................................................CCGGTCGATTGGTGTGACGGC.................................................................................................................................... 21 3 4 0.75 3 2 1
.........................................................................................................................................................................................................................CCGGTCTAATGGCGTGCGGGC.................................................................................................................................... 21 3 2 0.50 1 1 0
............................................................................................................................................................................................................................................................................CGTTCGTTTTTACCGACACTAT................................................................................ 22 3 2 0.50 1 1 0
..........................................................................................................................CGACGACGATGGTCACGGTTA................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 1
..........................................................................................................................................................................................................................AGGTCGACTGGCGTGACGGC.................................................................................................................................... 20 2 2 0.50 1 1 0
.........................................................................................................................................................................................................................TCGGTCGATTGGCGTGACGGC.................................................................................................................................... 21 3 13 0.46 6 5 1
..........................................................................................................................................................................................................................AGGTCGAATGGCGTCAGGGC.................................................................................................................................... 20 3 3 0.33 1 0 1
..........................................................................................................................................................................................................................CGGTCTATTGGCGTGACGGC.................................................................................................................................... 20 3 7 0.29 2 2 0
.........................................................................................................................................................................................................................TAGGTCGACTGGCGTGACGGC.................................................................................................................................... 21 3 4 0.25 1 1 0
.........................................................................................................................................................................................................................CTGGTCGATTGGCGTGACGGC.................................................................................................................................... 21 3 4 0.25 1 1 0
.........................................................................................................................................................................................................................CCGGTCGATTGGCGAGACGGC.................................................................................................................................... 21 3 4 0.25 1 1 0
.........................................................................................................................................................................................................................CCGGTGGAGTGGCGAGAGGGC.................................................................................................................................... 21 3 4 0.25 1 0 1
.........................................................................................................................................................................................................................TCGGTCGATTGGTGTGAGGGC.................................................................................................................................... 21 3 5 0.20 1 1 0
.............................................................................................................................................................................................................................................................................GTTCGTTTTTACCGACACTAT................................................................................ 21 3 5 0.20 1 1 0
.........................................................................................................................................................................................................................CCGGCCGATTGGCGTGACGGC.................................................................................................................................... 21 3 5 0.20 1 1 0
.........................................................................................................................................................................................................................TCGGTCGATTGGCGTGCGGGC.................................................................................................................................... 21 3 5 0.20 1 1 0
..........................................................................................................................................................................................................................CGGTTGACTGGTGTGACGGC.................................................................................................................................... 20 3 6 0.17 1 1 0
..........................................................................................................................................................................................................................CGGTCGATTTGCGAGAGGGC.................................................................................................................................... 20 3 6 0.17 1 1 0
.........................................................................................................................................................................................................................TTGGTCGACTGGCGTGACGGC.................................................................................................................................... 21 3 7 0.14 1 1 0
.........................................................................................................................................................................................................................GCGGTCGACTGGCGTGACGGT.................................................................................................................................... 21 3 8 0.13 1 1 0
..........................................................................................................................................................................................................................AGGTCGACTGGTGTGACGGC.................................................................................................................................... 20 3 9 0.11 1 1 0
..........................................................................................................................................................................................................................CGGCCGATTGGCGTGACGGC.................................................................................................................................... 20 3 9 0.11 1 1 0
..........................................................................................................................................................................................................................CGCTCGATTGGCGTGACGGC.................................................................................................................................... 20 3 11 0.09 1 0 1
..........................................................................................................................................................................................................................CGGTCGATTGGCGTGAAGAC.................................................................................................................................... 20 3 14 0.07 1 1 0
...........................................................................................................................................................................................................................GGCCGACTGGTGTGACGGC.................................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:15713070-15713439 + dmo_799 CA-GACAAGGCCAAGGGGAA-------------TGGCTTCCTGTGGCTTGGAC--------------------T----------GCGCTGCCG-AGTGAGCTGAATAAAAAGCGGACTTGTGAGTGTGTGAGTGT-----------------------------------GCGAG-----------------------------------------------------------T------GT--G-------------T--------TTGTGT--------GTGTGCGTGTGC-----------------------GTG------------------------------------T---------GCTGCTGC---------------------------------------------------------------------------------------------------------TGCCA--------------------------------------------------------------------------------------------------AT-GCCAATGACAT--------------------------------------------------------TGGCTGAGCTCGCACTGCAACTGCAA------------CATGCTAAAACATTGGTCAACTGCCACGTACTCAGCAGTCAATGGCCAGCTGA---------------------------------------------------------------------------------------------------CCGC-A--CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAC-------------AATAACAGCTAAAAA-------AC-CAGTGCAA--------GGTGCAACCAAAAATGGCTTTTAT----------AGCTGCCAGTTGAGAGC----------AGTAAATTCA-----------------------------------------------------------------------------------------------------ATAGC---------------------AACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
droVir3 scaffold_13049:9528836-9529115 - CA-CGAAATGCCAACTAGAC-------------TGGCTAACTATACAGTCGAC----------TGTCTGTTGGT---------------------------------------------------------GTGC--T--------G----------CTCTATG---AATG----TGCTGTG------------------------------------------TGTGTGTGC----------TAGTGTA---------TGCGT------GTGT----GT------GTGTGTGA-----------------------GACTGCCTCTATGGCT------------------------GGCTGGCTA----CGCT----------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCC---------------------------------------------------------------------------------------------ACAAAACA-GCGC-ATAGAGCAGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAACAGCGCTTAGTGCCACATCAC--GA-----------------------------------------------------------------A--TCTTATCGCA-A----------------------GCGC----------ACGAATGCCA-----------------------------------------------------------------------------------------------------GAAAC---------------------AGCAGCAACAGCAGCAGCAACAGCAACAACAGCAACAACAACAACACGA
droGri2 scaffold_14853:6781561-6781941 - TG-AAAAACGCCAAAAAAAT-------------TGATTTAAAGTGAATTTGTG------------TGTG---------------------------------------------------------CGTGTGTGT-----------------------------------------TGAGTGCTTGACTCTG--------------------TGTGTGTGTGCGTGTGTG----T------GCGTGTGTG---------TGTGT------GTGT----GT----------GTGT---G----------------TGTGTTTGCTTATTTCTCTGCACCAAGACAGAGAGAGAGAGA----------GAGAGAGA----------GAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGAGCGA---GACAGGGAGT-------G-----C-ACAGCGCATTGCAATCGGCTA---------------------------------------------------------------------GAT--ATGTGCA---------G------CCGAGTGAGCA------------AGA--GCGAG--------------ACAGCGCT---------------ATTTGACACAGGCGTGGCCAAAGAATA-----GTGGGAAATTGTTCGTTTCACACCGCTCG-----------------------TTATGATT----------------A--------T----------------------------------------------GG----GCAATTTGAGC------G-----------------------------------------------------------------------------------------------------AAAGC---------------------AGCAACATCAACAGCAGCAGCAGCAGCAGCGGCATCGGCATCGGCAGCG
droWil2 scf2_1100000004909:6851956-6852330 - AA-GATAAAA-AAAAGGGAGAAAAGTTGTCGCCTGCTTTTCTGTCTCTTTTGC--------------------T----------GTGCTCTCGGTATGAGTTT------------------------------TT-----------------------------------------TCAGTACGTGAATGTG--------------------TGTGTGTGTG----------CGTGTGCGTGTGTGTGTG--TGTGTGT-------------------G--T--------GCA-TGTGT-------------------------------------------------------------------CTGAGTGTGAGGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-GTGGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTCGTGTCTATGTC----------------------TATATCTA---TATGTCTAT-G------------------------------------------------------------------------------TGTGAAATGAGCTTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------AACGGCAACA---ACAGCATCAACAACAACAACAACAAGAACAACTGACAAG--GACGCTCATATGAAAACAAACGCATAATTTAAGCGTAATTGCTGTCATTTTTCATTCGAG-T---------------GCGAGTGCCAGTGCC---AGTGCCAGTGCCATGT--TGGGGCAAAGGCATCGTCT
dp5 3:16702649-16702954 + AAGTG------------------------------------------------------------TGCG-------------------------------------------------------TGTGTGCGTGT------------------------GTGCG---TGTG-------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------G------------------------------TAGTTAGT----------------------------------------GTTGCATTT----CTGT----------GTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------TCATCCAATGGCCACCCATTTA-----------------GAAGCCAAT------------------------------------------------------------------------G---------------------------G-GCGACATCTCTAGT-----------------------------------------------------------------------------------------------------------------------GATCGATC---GGGTCCCAG-A---CCCT-----------------------------------------------------CTTCACGCT---GCTGCAGTT----------------CCTCATCCTGCAGT----A---------------------------------------GCAAGCCATCGA-------------------------------------------------------------------------------------------------------------------------------------------TGGCA--------GTTTCGTCCTGGAACAGCTTTAGC----------ACCTCATCGTTGGTCTG----------CGAGGCGTCA-----------------------------------------------------------------------------------------------------CCAGC---------------------GGCGTTGCCAGCAGCGGCGGCATCCTTGTCGTCGGCTGCGGCGGCGGCG
droPer2 scaffold_1:9204268-9204539 + TG-TG------------------------------------------------------------TGCT---------------------------------------------------------TGCGTGTGT----------------------------G--T-----GCG-----------------------------------------------------------T------GC----GTG-------------------TGTGTGTGTGTAG--------GAG---------------------AGA-------------------------------------------------GATGCAGT----------GGAT---------CAAC------------A--------GCAGTGCTGGGCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGCGGATCAGACCGCACCAGTCCACCTACGACACGCAACGACGACTGAAAC----GAGCGCCTG-GCGAAAGGACCAACATCAG------------GAC-TC----------------------------GCAGTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCATTGCCAGTGCCCG---T-----------------------------------------------------------------------------------------GG----------------CAGAGGC---------------------------------------AAA-----------------------------------G----------------------------------------------------------------A--------------------------------------------------AGCAGAGGAA-----------------------------------------------------------------------------------------------------GGAGC---------------------AGCAGCAGCAGCAGCAGCAGCAGCAGTGAAAGAAATACCAACAGCAGCA
droAna3 scaffold_13335:1386481-1386752 + TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TGTGTGTGT-----------------------------------GTAGG-----------------------------------------------------------T------GA--G-------------T--------GGGTGAG--TAT------GCGTGCGT-GTC-----------CT------GTTCT-----------TTTGTT-------------------------------------------------A--------CAACAATTTTTGCGCAA--------TTTCTTTTGTGCTTTGTGCAGCCGC--------------------------------CGCCA--------------------------------------------ACGCTTCCATTTTCCATTGCCGCTGTCA---------TAACTGTCGCTCCACCAAC-GAGACCCCGAC-------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------GGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCAACACCAACAC------CAGCAACAGCAACAGCA--ACAG----------------GAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC--------------------------------------------------------------------------------------------------------ACA-------------------------CAGGAGCAGCAGAAGCAGCAGCAGCAGCAACAGCAAGAGCAACAGCA
droBip1 scf7180000396413:542002-542246 + GA-GG------------------------------------------------------------GTGC---------------------------------------------------------TGCGAATGA----------------------------------------------------------------------------------------------------------------G---------------------GGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGT----------GGA-GGAGGTGCAGC--TTCAG--------------------------------------------------------------------------------------------------ATAGCCAAC------------------------------------------------------------------------GAACAGCAGCAGCAACACGCCCAGC-----------------------------------------------------------------------------------------------------AGTTGCAGCAACA--GAAGCTCC---AACAGCAGCAACGTGAGGAGCGAATG-CAGC-----------------------------------TTTTGCAGCAA-----------------------------CAGCA-----A-----------CT-------------------------------------G------CAGCAGCAGCAGCTGCA--ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------AACAACAGCA------------CCTGCA--------------------------------------------------------------------------GCAGC---------------------AACTGGAGCAGCAGCTCGAGCATCAGCAGGAACAACAGCCACAGCAGCA
droKik1 scf7180000302586:21792-22049 + ACATA------------------------------------------------------------TATG-------------------------------------------------------TGTGTGAGTGC--G-----TCGC----------GT---------------G-----------------------------------------------------------T------GT--G-------------T--------TGGTGT--CTGTAA--------ATG---------------------TGT--G------------------------------------A---------GCTACTAC----------AA-----------CAAC---------------------------------------------------------------A-ACAACAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCA-GCAACAACAGTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------ACATCAAGCA---GCAGCAGCA----------------GCAGCTGCAGCAAC----A---------------------------------------ACA--ACAACAACAACAGTTCTTAGCAGCAAC---------------------------------------ATA-----------------------------------AAAGCAAATTAAAA-------------------------------TA--------G----------------------------------------------CA----GCAAT--------------------------------------------------------------------------------AAAAAGCC--------------------------AAAGC---------------------ACCAACAACAACAGCAGCAGCAGCAACAAACACAATTGCAACAACAATA
droFic1 scf7180000453850:234709-235046 + CT-TC-----------------------------------CCGCAGCTC--ACTTCACCAACA--AGTG---------------------------------------------------------AGCGGATGTTCG--------A----------GTGTGTG---TGTG-------------------------------------------------------------TGTGTG-------------------------------TGTTCCT--T------------T----TGAAGTGCACAGCAT----------------------------------------------------------GTT-------------------------------------------------------------------------------------------------AAATTCGTAA-----------------------------AATTCATTAAGATTCCGTTGC-------------------CG--------------------------------AT-GCCAAC----------------------------------------------------------CAGCGACTG-GCAACAACAGCAACAGCAA------------CAA-CAAAAGC----------------------------------------------------------------------------------------AAAAGCAACAACA--GCGACAACGACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACGA-----AACGGCAACGTTGCTGATGTCGAAA----------------------------------------------------AGTGC--CAAGAGCAGAGCCAAC-------------------------------AA--------GCAGCAACCAA--ACGACCCACA-A----------------------GACC----------AGAGATGCCA-----------------------------------------------------------------------------------------------------GCAGC---------------------AGCAGCAACATCAGCAACACCAACAACACCAACAACAGCAGCAGCAACA
droEle1 scf7180000490995:361544-361842 + GG-AC-TACGCCAGCGGAATAAAAATAG-------------------------------------TCTG---------------------------------------------------------TGTGAGTGTGCC--------T----------GTGTGTG---TGTG-------------------------------------------------------------T------GTGTG-------------------------TGTGTGT--G------------T--------------------------------------------------------------------------G--------------------------------------------------------------------------------TAAGTGTAACGGTTC-------------------TCAAGGTCACGGGCGAAAGAGACAGCAACTGGGGGCTTTCCCCGGCTT-----------------------------------------------------------------------------------------------------------------------------------------------------CGCTG--------------------------------------C-------------CAACT-GT-------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------AAAAATGATTTAGTAGT----------------------------------------------------------------------------------TCA-----------------------------------------------AAGCCGCGTTTTGCGTCTGCTGCAAAAGTGC--GAA--------------------------AA-------AT-ATATGT--------------------------------------------------------------------------------G---------------------------------------AGGGCAGCGAACGTCCGACAGCAGCTGTCAAATGCA--------------------------AATAC---------------------AGCAAC-ACAGCGGTGGCAGCAGCATCAT-CGCAGC-ACGGCGGCAACA
droRho1 scf7180000780066:448169-448429 + TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TATGGGTGTGCG--------T----------GAGTGTG---TGTG----TGGAGTG------------------------------------------TTCGTACAC----------ATATACA---------TACGTGTGTGAGTGTG----------------TGT----------G----AT----------------------------------------------------------GTT-TGTGTACGCACGCGGCTGTTTGTT--------------------------------------------------TAAGTGTAGCGTTAA-------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGACACTGACAAGC---------------------------------------------------------------------------------------------AGCGAATG-CCGC-A--CACCTGTAAGCAATA------------------------------------------CCGTTGCTCG---GTTGTATGTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGTTGTGCC------------------------------------------------AACAACAACA--------------------------------------------------------------------------------------------GTCGC---------------------AGCAGCAGCAGCAGCAGCAGCGGCAACAGCAACAACAGCAATATCGGCA
droBia1 scf7180000302421:2255345-2255621 + TG-TG------------------------------------------------------------GGTG---------------------------------------------------------TGTGTGTGT-----------------------------------G-------------------------------------------------------------TGTGTGTGTCTGCGCGTGAGTGTGTGT-------------------GTCG------------TGCGT---CCC----GT----------------------------------------------------------GTG-TGAGTACGAGCGAGCGCGCGTGTG--------------------------------------------------TATGT----------GAG-GAAAACGCCGCAC-----------------------------ACTGCGAAAATTTTCCTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGTCGAG-------------AATAACCGCTAAAATTGTGGAAAAA--------CAGGAGAAAACC---CCGAAGCGGA-------AGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTACTC---------------------------------------------------------------------------------------------------------------GC---------------------CGCAACCGCCGCAGCAGCAGCCGCAACAGCAGCAGCAACTGCAGCAGCA
droTak1 scf7180000415281:47416-47749 - AG-TG------------------------------------------------------------ACGACGTGTGTGCTGCATCGCGGCGTCG-CGCGATTCGAACTACGAGGCGAACTAAGAGCGTGGGAGAGG-----------------------------------AAGAG-----------------------------------------------------------G------GA----G-----------A--------GGGTGT--------AAGCGGGGGCGA-----------------------GAGCT-----------CCACCA-------------------------------------------------A--------CACCAAAAGGAGCAAAA--------ACAATAATAAGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACGACAACATCAAAGCTTT---GATGGCGGCGCCAAAGCCA---AACGGCGAG--------G-----C-AGAGCGCCCCACAAGCAACAACTGCAACAA------------------------------------------------------------------T----AACAACAACAATTGCAGCAG------CAGCAACAACAACAATC--ACAG----------------CGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG--------------------------------------------------------------------------------------------------------AAA------------------------CCGGCAGCAACAACAACAATAACAACAACAATGACAACAGCAACAACA
droEug1 scf7180000409548:868796-869103 - TG-TG------------------------------------------------------------TTTG---------------------------------------------------------TGTCTGTGT--C------TGT----------GT---------------C-----------------------------------------------------------T------GT--TTC---------------------TGTGC--CTTTAT--------GTG---------------------TGT--G------------------------------------C---------GTTGTTGT----------GATCC--------------------------------------------------------------------------------------------CAAATGGCCCGAAA-----------------------------------------------------------------------------------------------GCCAAGTGA------------------------------------------------------------------AC------------------------------------------------------------------------C-GTATAAACAAT----TTATAGCGTCCAAGCAGCAACAACTTGCACAGCGGCAACATCAATACA----------------------CATACATA---TACACTCAC-A---CACT-----T-ACACACACACACACACACTAGTTGCAACAACAAACAACGACATTGCCAATGCTCG---TAAAAATGCAAA-----------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------------------------------------------AGCAGCAGCA---ACAGCA--------------------------------------------------------------------------------------------ACAGC---------------------AACAGCAACAG---CAACAACATCTAGAGCATGAGCAACAGCAATAGTA
dm3 chrX:8293239-8293495 + TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TGTTTGTGC--TAGCACTCGCGGTTGTTTGTGTGTGTGTGT-----GTG-----------------------------------------------------------T------GC----G---------------------AGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT----------GAA-GAAAAAGCCGCAC-----------------------------ACTGCGAAAATTTTCCTTTCC-------------------TT----------------------------------------------------------------------------------------------------------------------------------TCC--------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGTCGAA-------------TATAACCGCTAAAATTGTGGAAAAA--------CAGGAGAAAACC---CCCAAGCGGA-------AGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTC---------------------------------------------------------------------------------------------------------------GC---------------------CGCAACCGCCGCAGCAGCAGCCGCAACAGCAGCAGCAACTGCAGCAGCA
droSim2 x:7863981-7864243 + TTGTG------------------------------------------------------------TGTG---------------------------------------------------------TTTTTGTGC--TAGCACTCGCGGTTGTGTGTGTGTGTGTGT-----GCG-----------------------------------------------------------T------GC--GTG---------------------AGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT----------GAA-GAAAAAGCCGCAC-----------------------------ACTGCGAAAATTTTCCTTTCC-------------------TT----------------------------------------------------------------------------------------------------------------------------------TCC--------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGTCGAA-------------TATAACCGCTAAAATTGTGGAAAAA--------CAGGAGAAAACC---CCCAAGCGGA-------AGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTC---------------------------------------------------------------------------------------------------------------GC-----------------CG-CAACCGCCGCAGCAGCAGCCGCAACAGCAGCAGCAACTGCAGCAGCAGCA
droSec2 scaffold_21:116215-116553 + GG-CG-----------------------------------G------------------------CGCT--------------------GC-----------------------------------CGACTGTGA-----------------------------------------TGAGCGAACGCTTTTGCTAAGCGAGGAGATTGTTGTTGCG----------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC--------------------------------TGCCT--------------------------------------------GCGTCGGCGT---TCTCTGCCGGCGTCG---------CTGCTGCTGCGCCGCCAAC-GTCGCTGCCAC-------------------------------------------------TGGT------------GCACACAACAACAACAA------------CGCAGCA--------------------------------------------AA--------------------------A------------------------CGACAACA--ATGTGAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAATGG-----TTCGCTTGT------------GGTC----------------------------------------------------AGTGC--GAAAAACATGGCTAATAATAAAAGT------------------------AATAAGAATAAC---AGCAAATGCA-------AAAAC--------------------------------AACGAGGCCA-----------------------------------------------------------------------------------------------------GCAGCAGCAACAACAACAATGCGG-CGACAGCGGCAGCTGCAGCAGCTACAACAACAACGACGACAGCAGAAGAA
droYak3 X:13233494-13233797 - GA-AT-A----------------------------------------------------------AAGA---------------------------------------------------------AACGCACATGCG--------T----------GTGTGTG---TGTG-------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------GCTG--------GTG---------------------AGT----------------------------------------GTCTGATTG----CGGT----------GCCTG--------CAAT------------TGCGCATGT----------------------------------------GCTGGACCACTCTATAC-----------------------------CCTGCAAATATCCCCCACCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CACCCTCATC---------------------------------------------------T-GT-------------------------------------------------CCAACAAACA--CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAAAAAA-------AT-ATATATAA--------AATC---CCCAAAAGGACCTCTCCATCATAAGACATATGCTCGC---ATATATACAGCTTTAACAAGGCGA-----------------------------------------------------------------------------------------------------AAAGC---------------------AACAGCAACAACAAAAACAACAGCAACGA-GACAACAACAACAACAACA
droEre2 scaffold_4690:11713042-11713327 + TG-AG------------------------------------------------------------AGTG---------------------------------------------------------TGTGTGTGT-----------------------------------G-------------------------------------------------------------CGTCTGTGAGTGTGAGTGAGTGTGTGT-------------------GCTG-------------GTGCCGTGCTGTGTGT----------------------------------------------------------GTTGT----------GTTTG--------CAAC-----------------------------------------------------------------TAAATTGTTAGAC-----------------------------ATTTTAATTAATTTCC---------------------------------------------------------------------------------------------------------------------------------------------ACTTTAATGTTTA------------CTTAGCT--------------------------------------------AA----ATGTTTTCCTTCCTGCCTGCAGGCAACAACAACGGAG---------------------------------------------------------------------------------------------------------------------------ACTTCCAACGGATACGACAGCG----------------GCAGCTAGAGATACTTGTA---------------------------------------ACT--AAAGTGACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------------------GGCCTTA-----------------------------------------------------------------------------------------------------ACAACAATAAC---------------ACCAAC----AAAACAGCAACAGCAACAGCAACAGCAACAGCAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CA-GACAAGGCCAAGGGGAA-------------TGGCTTCCTGTGGCTTGGAC--------------------T----------GCGCTGCCG-AGTGAGCTGAATAAAAAGCGGACTTGTGAGTGTGTGAGTGT-----------------------------------GCGAG-----------------------------------------------------------T------GT--G-------------T--------TTGTGT--------GTGTGCGTGTGC-----------------------GTG------------------------------------T---------GCTGCTGC---------------------------------------------------------------------------------------------------------TGCCA--------------------------------------------------------------------------------------------------AT-GCCAATGACAT--------------------------------------------------------TGGCTGAGCTCGCACTGCAACTGCAA------------CATGCTAAAACATTGGTCAACTGCCACGTACTCAGCAGTCAATGGCCAGCTGA---------------------------------------------------------------------------------------------------CCGC-A--CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAC-------------AATAACAGCTAAAAA-------AC-CAGTGCAA--------GGTGCAACCAAAAATGGCTTTTAT----------AGCTGCCAGTTGAGAGC----------AGTAAATTCA-----------------------------------------------------------------------------------------------------ATAGC---------------------AACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AACAGCAGCAGCAGCAGCAGCAGCA........................26200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCAGCA............24200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------AACAGCAGCAGCAGCAGCAGC............................24200.051000001
................................................................................................................................................................................................................................................................................GT--------GTGTGCGTGTGC-----------------------GTG------------------------------------T---------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------------------------------------------------------------------ATAGC---------------------AACAGCAGCAGCA....................................20200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAG.............................20200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAGCAGC....26200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGC.......19200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAACAGCAGCA...............27200.051100000
droVir3
CA-CGAAATGCCAACTAGAC-------------TGGCTAACTATACAGTCGAC----------TGTCTGTTGGT---------------------------------------------------------GTGC--T--------G----------CTCTATG---AATG----TGCTGTG------------------------------------------TGTGTGTGC----------TAGTGTA---------TGCGT------GTGT----GT------GTGTGTGA-----------------------GACTGCCTCTATGGCT------------------------GGCTGGCTA----CGCT----------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCC---------------------------------------------------------------------------------------------ACAAAACA-GCGC-ATAGAGCAGTAAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAACAGCGCTTAGTGCCACATCAC--GA-----------------------------------------------------------------A--TCTTATCGCA-A----------------------GCGC----------ACGAATGCCA-----------------------------------------------------------------------------------------------------GAAAC---------------------AGCAGCAACAGCAGCAGCAACAGCAACAACAGCAACAACAACAACACGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA-A----------------------GCGC----------ACGAATGCCA-----------------------------------------------------------------------------------------------------...........................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAC---------------------AGCAGCAACAGCAGCA.................................2150.201000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCA........................19200.102000000000000000000000020000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAAC......................18200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGC................20200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------AGCAGCAACAGCAGCAGCAAC............................23200.051000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACA...........................21200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AGCAGCAACAGCAGCAGCAACA...........................23200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA...........................19200.051000000000000000000000000000000000000000000000000000000000000100
droGri2
TG-AAAAACGCCAAAAAAAT-------------TGATTTAAAGTGAATTTGTG------------TGTG---------------------------------------------------------CGTGTGTGT-----------------------------------------TGAGTGCTTGACTCTG--------------------TGTGTGTGTGCGTGTGTG----T------GCGTGTGTG---------TGTGT------GTGT----GT----------GTGT---G----------------TGTGTTTGCTTATTTCTCTGCACCAAGACAGAGAGAGAGAGA----------GAGAGAGA----------GAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGAGCGA---GACAGGGAGT-------G-----C-ACAGCGCATTGCAATCGGCTA---------------------------------------------------------------------GAT--ATGTGCA---------G------CCGAGTGAGCA------------AGA--GCGAG--------------ACAGCGCT---------------ATTTGACACAGGCGTGGCCAAAGAATA-----GTGGGAAATTGTTCGTTTCACACCGCTCG-----------------------TTATGATT----------------A--------T----------------------------------------------GG----GCAATTTGAGC------G-----------------------------------------------------------------------------------------------------AAAGC---------------------AGCAACATCAACAGCAGCAGCAGCAGCAGCGGCATCGGCATCGGCAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................GTGTGTGCGTGTGTG----T------GCGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101
..............................................ATTTGTG------------TGTG---------------------------------------------------------CGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCGGC................18200.05110
droWil2
AA-GATAAAA-AAAAGGGAGAAAAGTTGTCGCCTGCTTTTCTGTCTCTTTTGC--------------------T----------GTGCTCTCGGTATGAGTTT------------------------------TT-----------------------------------------TCAGTACGTGAATGTG--------------------TGTGTGTGTG----------CGTGTGCGTGTGTGTGTG--TGTGTGT-------------------G--T--------GCA-TGTGT-------------------------------------------------------------------CTGAGTGTGAGGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-GTGGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACTCGTGTCTATGTC----------------------TATATCTA---TATGTCTAT-G------------------------------------------------------------------------------TGTGAAATGAGCTTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------AACGGCAACA---ACAGCATCAACAACAACAACAACAAGAACAACTGACAAG--GACGCTCATATGAAAACAAACGCATAATTTAAGCGTAATTGCTGTCATTTTTCATTCGAG-T---------------GCGAGTGCCAGTGCC---AGTGCCAGTGCCATGT--TGGGGCAAAGGCATCGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................GTGCGTGTGTGTGTG--TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.25500050
...............................................................................................................................................................................................................................................GTGTGTGTGTG--TGTGTGT-------------------G--T--------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
...............................................................................................................................................................................................G--------------------TGTGTGTGTG----------CGTGTGCGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07100001
............................................................................................................................................................................................TGTG--------------------TGTGTGTGTG----------CGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................................G--------------------TGTGTGTGTG----------CGTGTGCGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
dp5
AAGTG------------------------------------------------------------TGCG-------------------------------------------------------TGTGTGCGTGT------------------------GTGCG---TGTG-------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------G------------------------------TAGTTAGT----------------------------------------GTTGCATTT----CTGT----------GTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------TCATCCAATGGCCACCCATTTA-----------------GAAGCCAAT------------------------------------------------------------------------G---------------------------G-GCGACATCTCTAGT-----------------------------------------------------------------------------------------------------------------------GATCGATC---GGGTCCCAG-A---CCCT-----------------------------------------------------CTTCACGCT---GCTGCAGTT----------------CCTCATCCTGCAGT----A---------------------------------------GCAAGCCATCGA-------------------------------------------------------------------------------------------------------------------------------------------TGGCA--------GTTTCGTCCTGGAACAGCTTTAGC----------ACCTCATCGTTGGTCTG----------CGAGGCGTCA-----------------------------------------------------------------------------------------------------CCAGC---------------------GGCGTTGCCAGCAGCGGCGGCATCCTTGTCGTCGGCTGCGGCGGCGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................G-------------------------------------------------------TGTGTGCGTGT------------------------GTGCG---TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................CG---TGTG-------------------------------------------------------------TGTGTGTGTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000010000
........................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510001000000
....................................................................................................................................TGT------------------------GTGCG---TGTG-------------------------------------------------------------TGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000001000
droPer2
TG-TG------------------------------------------------------------TGCT---------------------------------------------------------TGCGTGTGT----------------------------G--T-----GCG-----------------------------------------------------------T------GC----GTG-------------------TGTGTGTGTGTAG--------GAG---------------------AGA-------------------------------------------------GATGCAGT----------GGAT---------CAAC------------A--------GCAGTGCTGGGCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGCGGATCAGACCGCACCAGTCCACCTACGACACGCAACGACGACTGAAAC----GAGCGCCTG-GCGAAAGGACCAACATCAG------------GAC-TC----------------------------GCAGTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCATTGCCAGTGCCCG---T-----------------------------------------------------------------------------------------GG----------------CAGAGGC---------------------------------------AAA-----------------------------------G----------------------------------------------------------------A--------------------------------------------------AGCAGAGGAA-----------------------------------------------------------------------------------------------------GGAGC---------------------AGCAGCAGCAGCAGCAGCAGCAGCAGTGAAAGAAATACCAACAGCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------------------------------------GGAGC---------------------AGCAGCAGCAGCAGCAG................................24160.061010000
...................................................................................................................................................................G--T-----GCG-----------------------------------------------------------T------GC----GTG-------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
.....................................................................................................................................GT----------------------------G--T-----GCG-----------------------------------------------------------T------GC----GTG-------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droAna3
TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TGTGTGTGT-----------------------------------GTAGG-----------------------------------------------------------T------GA--G-------------T--------GGGTGAG--TAT------GCGTGCGT-GTC-----------CT------GTTCT-----------TTTGTT-------------------------------------------------A--------CAACAATTTTTGCGCAA--------TTTCTTTTGTGCTTTGTGCAGCCGC--------------------------------CGCCA--------------------------------------------ACGCTTCCATTTTCCATTGCCGCTGTCA---------TAACTGTCGCTCCACCAAC-GAGACCCCGAC-------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------GGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCAACACCAACAC------CAGCAACAGCAACAGCA--ACAG----------------GAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC--------------------------------------------------------------------------------------------------------ACA-------------------------CAGGAGCAGCAGAAGCAGCAGCAGCAGCAACAGCAAGAGCAACAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGCA............20200.204000004
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCAGCAGCAGCAGC...................19200.051100000
droBip1
GA-GG------------------------------------------------------------GTGC---------------------------------------------------------TGCGAATGA----------------------------------------------------------------------------------------------------------------G---------------------GGTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGT----------GGA-GGAGGTGCAGC--TTCAG--------------------------------------------------------------------------------------------------ATAGCCAAC------------------------------------------------------------------------GAACAGCAGCAGCAACACGCCCAGC-----------------------------------------------------------------------------------------------------AGTTGCAGCAACA--GAAGCTCC---AACAGCAGCAACGTGAGGAGCGAATG-CAGC-----------------------------------TTTTGCAGCAA-----------------------------CAGCA-----A-----------CT-------------------------------------G------CAGCAGCAGCAGCTGCA--ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------AACAACAGCA------------CCTGCA--------------------------------------------------------------------------GCAGC---------------------AACTGGAGCAGCAGCTCGAGCATCAGCAGGAACAACAGCCACAGCAGCASizeHit CountTotal NormTotal
No Reads
droKik1
ACATA------------------------------------------------------------TATG-------------------------------------------------------TGTGTGAGTGC--G-----TCGC----------GT---------------G-----------------------------------------------------------T------GT--G-------------T--------TGGTGT--CTGTAA--------ATG---------------------TGT--G------------------------------------A---------GCTACTAC----------AA-----------CAAC---------------------------------------------------------------A-ACAACAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCA-GCAACAACAGTAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------ACATCAAGCA---GCAGCAGCA----------------GCAGCTGCAGCAAC----A---------------------------------------ACA--ACAACAACAACAGTTCTTAGCAGCAAC---------------------------------------ATA-----------------------------------AAAGCAAATTAAAA-------------------------------TA--------G----------------------------------------------CA----GCAAT--------------------------------------------------------------------------------AAAAAGCC--------------------------AAAGC---------------------ACCAACAACAACAGCAGCAGCAGCAACAAACACAATTGCAACAACAATASizeHit CountTotal NormTotal
No Reads
droFic1
CT-TC-----------------------------------CCGCAGCTC--ACTTCACCAACA--AGTG---------------------------------------------------------AGCGGATGTTCG--------A----------GTGTGTG---TGTG-------------------------------------------------------------TGTGTG-------------------------------TGTTCCT--T------------T----TGAAGTGCACAGCAT----------------------------------------------------------GTT-------------------------------------------------------------------------------------------------AAATTCGTAA-----------------------------AATTCATTAAGATTCCGTTGC-------------------CG--------------------------------AT-GCCAAC----------------------------------------------------------CAGCGACTG-GCAACAACAGCAACAGCAA------------CAA-CAAAAGC----------------------------------------------------------------------------------------AAAAGCAACAACA--GCGACAACGACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACGA-----AACGGCAACGTTGCTGATGTCGAAA----------------------------------------------------AGTGC--CAAGAGCAGAGCCAAC-------------------------------AA--------GCAGCAACCAA--ACGACCCACA-A----------------------GACC----------AGAGATGCCA-----------------------------------------------------------------------------------------------------GCAGC---------------------AGCAGCAACATCAGCAACACCAACAACACCAACAACAGCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droEle1
GG-AC-TACGCCAGCGGAATAAAAATAG-------------------------------------TCTG---------------------------------------------------------TGTGAGTGTGCC--------T----------GTGTGTG---TGTG-------------------------------------------------------------T------GTGTG-------------------------TGTGTGT--G------------T--------------------------------------------------------------------------G--------------------------------------------------------------------------------TAAGTGTAACGGTTC-------------------TCAAGGTCACGGGCGAAAGAGACAGCAACTGGGGGCTTTCCCCGGCTT-----------------------------------------------------------------------------------------------------------------------------------------------------CGCTG--------------------------------------C-------------CAACT-GT-------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------AAAAATGATTTAGTAGT----------------------------------------------------------------------------------TCA-----------------------------------------------AAGCCGCGTTTTGCGTCTGCTGCAAAAGTGC--GAA--------------------------AA-------AT-ATATGT--------------------------------------------------------------------------------G---------------------------------------AGGGCAGCGAACGTCCGACAGCAGCTGTCAAATGCA--------------------------AATAC---------------------AGCAAC-ACAGCGGTGGCAGCAGCATCAT-CGCAGC-ACGGCGGCAACASizeHit CountTotal NormTotal
No Reads
droRho1
TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TATGGGTGTGCG--------T----------GAGTGTG---TGTG----TGGAGTG------------------------------------------TTCGTACAC----------ATATACA---------TACGTGTGTGAGTGTG----------------TGT----------G----AT----------------------------------------------------------GTT-TGTGTACGCACGCGGCTGTTTGTT--------------------------------------------------TAAGTGTAGCGTTAA-------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGACACTGACAAGC---------------------------------------------------------------------------------------------AGCGAATG-CCGC-A--CACCTGTAAGCAATA------------------------------------------CCGTTGCTCG---GTTGTATGTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TGTTGTGCC------------------------------------------------AACAACAACA--------------------------------------------------------------------------------------------GTCGC---------------------AGCAGCAGCAGCAGCAGCAGCGGCAACAGCAACAACAGCAATATCGGCASizeHit CountTotal NormTotal
No Reads
droBia1
TG-TG------------------------------------------------------------GGTG---------------------------------------------------------TGTGTGTGT-----------------------------------G-------------------------------------------------------------TGTGTGTGTCTGCGCGTGAGTGTGTGT-------------------GTCG------------TGCGT---CCC----GT----------------------------------------------------------GTG-TGAGTACGAGCGAGCGCGCGTGTG--------------------------------------------------TATGT----------GAG-GAAAACGCCGCAC-----------------------------ACTGCGAAAATTTTCCTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGTCGAG-------------AATAACCGCTAAAATTGTGGAAAAA--------CAGGAGAAAACC---CCGAAGCGGA-------AGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTACTC---------------------------------------------------------------------------------------------------------------GC---------------------CGCAACCGCCGCAGCAGCAGCCGCAACAGCAGCAGCAACTGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
AG-TG------------------------------------------------------------ACGACGTGTGTGCTGCATCGCGGCGTCG-CGCGATTCGAACTACGAGGCGAACTAAGAGCGTGGGAGAGG-----------------------------------AAGAG-----------------------------------------------------------G------GA----G-----------A--------GGGTGT--------AAGCGGGGGCGA-----------------------GAGCT-----------CCACCA-------------------------------------------------A--------CACCAAAAGGAGCAAAA--------ACAATAATAAGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACGACAACATCAAAGCTTT---GATGGCGGCGCCAAAGCCA---AACGGCGAG--------G-----C-AGAGCGCCCCACAAGCAACAACTGCAACAA------------------------------------------------------------------T----AACAACAACAATTGCAGCAG------CAGCAACAACAACAATC--ACAG----------------CGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG--------------------------------------------------------------------------------------------------------AAA------------------------CCGGCAGCAACAACAACAATAACAACAACAATGACAACAGCAACAACASizeHit CountTotal NormTotal
No Reads
droEug1
TG-TG------------------------------------------------------------TTTG---------------------------------------------------------TGTCTGTGT--C------TGT----------GT---------------C-----------------------------------------------------------T------GT--TTC---------------------TGTGC--CTTTAT--------GTG---------------------TGT--G------------------------------------C---------GTTGTTGT----------GATCC--------------------------------------------------------------------------------------------CAAATGGCCCGAAA-----------------------------------------------------------------------------------------------GCCAAGTGA------------------------------------------------------------------AC------------------------------------------------------------------------C-GTATAAACAAT----TTATAGCGTCCAAGCAGCAACAACTTGCACAGCGGCAACATCAATACA----------------------CATACATA---TACACTCAC-A---CACT-----T-ACACACACACACACACACTAGTTGCAACAACAAACAACGACATTGCCAATGCTCG---TAAAAATGCAAA-----------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------------------------------------------AGCAGCAGCA---ACAGCA--------------------------------------------------------------------------------------------ACAGC---------------------AACAGCAACAG---CAACAACATCTAGAGCATGAGCAACAGCAATAGTASizeHit CountTotal NormTotal
No Reads
dm3
TG-TG------------------------------------------------------------TGTG---------------------------------------------------------TGTTTGTGC--TAGCACTCGCGGTTGTTTGTGTGTGTGTGT-----GTG-----------------------------------------------------------T------GC----G---------------------AGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT----------GAA-GAAAAAGCCGCAC-----------------------------ACTGCGAAAATTTTCCTTTCC-------------------TT----------------------------------------------------------------------------------------------------------------------------------TCC--------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGTCGAA-------------TATAACCGCTAAAATTGTGGAAAAA--------CAGGAGAAAACC---CCCAAGCGGA-------AGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTC---------------------------------------------------------------------------------------------------------------GC---------------------CGCAACCGCCGCAGCAGCAGCCGCAACAGCAGCAGCAACTGCAGCAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
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G2		V128
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ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
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Female-body		V142
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OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
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Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
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...TG------------------------------------------------------------TGTG---------------------------------------------------------TTTTTGTGC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15160.06100000000001000000
TTGTG------------------------------------------------------------TGTG---------------------------------------------------------TTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15180.06100000000001000000
...........................................................................................................................................................GTGTGTGTGTGT-----GCG-----------------------------------------------------------T------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
......................................................................................................................................................TGTGTGTGTGTGTGTGT-----GCG-----------------------------------------------------------T------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
..GTG------------------------------------------------------------TGTG---------------------------------------------------------TTTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGA-------AGAAGAAGC......................................................................................................................................................................................................................16200.05100000000010000000
TTGTG------------------------------------------------------------TGTG---------------------------------------------------------TTTTTGTGG--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000010000000
droSec2
GG-CG-----------------------------------G------------------------CGCT--------------------GC-----------------------------------CGACTGTGA-----------------------------------------TGAGCGAACGCTTTTGCTAAGCGAGGAGATTGTTGTTGCG----------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC--------------------------------TGCCT--------------------------------------------GCGTCGGCGT---TCTCTGCCGGCGTCG---------CTGCTGCTGCGCCGCCAAC-GTCGCTGCCAC-------------------------------------------------TGGT------------GCACACAACAACAACAA------------CGCAGCA--------------------------------------------AA--------------------------A------------------------CGACAACA--ATGTGAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAATGG-----TTCGCTTGT------------GGTC----------------------------------------------------AGTGC--GAAAAACATGGCTAATAATAAAAGT------------------------AATAAGAATAAC---AGCAAATGCA-------AAAAC--------------------------------AACGAGGCCA-----------------------------------------------------------------------------------------------------GCAGCAGCAACAACAACAATGCGG-CGACAGCGGCAGCTGCAGCAGCTACAACAACAACGACGACAGCAGAAGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAATGCGG-CGACAGCGGCA.......................................2611.0010100
...................................................................................................................................GTGA-----------------------------------------TGAGCGAACGCTTTTGCTAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGG-----TTCGCTTGT------------GGTC----------------------------------------------------.......................................................................................................................................................................................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................GTTGTTGCG----------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC--------------------------------TGCCT--------------------------------------------GCGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...........................................................................................................................................................................................TTTTGCTAAGCGAGGAGATTGTTGTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGCCA-----------------------------------------------------------------------------------------------------GCAGCAGCAACA...............................................................2111.0011000
....................................................................T--------------------GC-----------------------------------CGACTGTGA-----------------------------------------TGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAC-GTCGCTGCCAC-------------------------------------------------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CTGCTGCTGCGCCGCCAAC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................................GCT--------------------GC-----------------------------------CGACTGTGA-----------------------------------------TGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
droYak3
GA-AT-A----------------------------------------------------------AAGA---------------------------------------------------------AACGCACATGCG--------T----------GTGTGTG---TGTG-------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------GCTG--------GTG---------------------AGT----------------------------------------GTCTGATTG----CGGT----------GCCTG--------CAAT------------TGCGCATGT----------------------------------------GCTGGACCACTCTATAC-----------------------------CCTGCAAATATCCCCCACCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CACCCTCATC---------------------------------------------------T-GT-------------------------------------------------CCAACAAACA--CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAAAAAA-------AT-ATATATAA--------AATC---CCCAAAAGGACCTCTCCATCATAAGACATATGCTCGC---ATATATACAGCTTTAACAAGGCGA-----------------------------------------------------------------------------------------------------AAAGC---------------------AACAGCAACAACAAAAACAACAGCAACGA-GACAACAACAACAACAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TG-AG------------------------------------------------------------AGTG---------------------------------------------------------TGTGTGTGT-----------------------------------G-------------------------------------------------------------CGTCTGTGAGTGTGAGTGAGTGTGTGT-------------------GCTG-------------GTGCCGTGCTGTGTGT----------------------------------------------------------GTTGT----------GTTTG--------CAAC-----------------------------------------------------------------TAAATTGTTAGAC-----------------------------ATTTTAATTAATTTCC---------------------------------------------------------------------------------------------------------------------------------------------ACTTTAATGTTTA------------CTTAGCT--------------------------------------------AA----ATGTTTTCCTTCCTGCCTGCAGGCAACAACAACGGAG---------------------------------------------------------------------------------------------------------------------------ACTTCCAACGGATACGACAGCG----------------GCAGCTAGAGATACTTGTA---------------------------------------ACT--AAAGTGACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------------------GGCCTTA-----------------------------------------------------------------------------------------------------ACAACAATAAC---------------ACCAAC----AAAACAGCAACAGCAACAGCAACAGCAACAGCAACAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:07 PM