dmo_784

exon [dmoj_GLEANR_16618:10]; exon [dmoj_GLEANR_16618:9]; CDS [Dmoj\GI15916-cds]; CDS [Dmoj\GI15916-cds]; intron [Dmoj\GI15916-in]

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTCGACAACGAGCCGAGCAGCAGCAGTAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGACGCAGTGGCAGCAACAACACAAACACAAACAACAACAACAACAACAATAGCAACAAGAACAATGACTGAAGCGTGCCTCGAAACCGAAGTGGGCAAATCAAACCGTTTGTACGTTTCCGATGCCACATGTGGCACACGCACATATATTTAGTGTGCCCCATAACCCGATCTTCCTCTATGCAGAATCAACTTTATCAAGCGCCGCAACTCGGAGATAATAGCCAGCGGCAGCA ************************************************........(((((((..(((((((((.....(((((((((.......................(((((..........)).)))..((.(((.(((....))).))).))..........))))))..))).....)))))).)))(((((((.............)))))))))))....)))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V041 embryo
..............GAGCACCAACAGTAGTCTATC........................................................................................................................................................................................................................................................................	21	3	2	0.50	1	1	0
...........................................................................................................CAACAATAGCAACAAGAACA............................................................................................................................................................................	20	0	13	0.08	1	1	0
......................................................................................................................................................................................................................................CCGATCTGCCTTTATTCAG..................................................	19	3	18	0.06	1	0	1

GAGCTGTTGCTCGGCTCGTCGTCGTCATCAGAGAGACTGCTCCTGCTACTCATGATGAAGCTACCTGCGTCACCGTCGTTGTTGTGTTTGTGTTTGTTGTTGTTGTTGTTGTTATCGTTGTTCTTGTTACTGACTTCGCACGGAGCTTTGGCTTCACCCGTTTAGTTTGGCAAACATGCAAAGGCTACGGTGTACACCGTGTGCGTGTATATAAATCACACGGGGTATTGGGCTAGAAGGAGATACGTCTTAGTTGAAATAGTTCGCGGCGTTGAGCCTCTATTATCGGTCGCCGTCGT ************************************************........(((((((..(((((((((.....(((((((((.......................(((((..........)).)))..((.(((.(((....))).))).))..........))))))..))).....)))))).)))(((((((.............)))))))))))....)))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V110 male body	M046 female body
.............................................................................................................................................................................................GTGGACACAGTGTGCGTGAAT.........................................................................................	21	3	4	0.25	1	1	0	0
..............CTCGTGGTTGTCATCAGAT..........................................................................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	2
.......................................................................................................................................................................................................................TCACAGGGGGTCTTGGGTT.................................................................	19	3	11	0.09	1	0	1	0
...................................................................................................TTGTTGTTGTTGTTATCGTTG...................................................................................................................................................................................	21	0	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:14185906-14186204 +	dmo_784	CTCGACAACGAGC-----CGAG---------------------------------------------------------CAGCAGCAGTAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGACGCAGTGGCAGCAACAACACAAACACAAACAACAA-------------CA---------ACAAC-----AACAA------------TAGCAA---------CAAGAACAATGACTGAA---GCGTGCCTCGAAACCGAAGTGGGCAAATCAAACCGTTTGTACGTTTC--------------------------------------CGA---------T-----------------------------------------------------------------G---------------------------------------CCACATGTGGCAC-ACGCACATAT-------------ATTTAGTGTGCCCCA----------------------------------------------------------------------------------------TAAC---------CCGATC---TTCCTCTAT---------------GCAGAATCAAC-TTTATCAAGCGCCGCAACTCGGAGATAATA--G----------------CCAGCGGCAGC----A
droVir3	scaffold_12928:2414067-2414348 +	dvi_8638	CTCGCCA--GCCACCACC---A---------------------------------------GGACGACGACGACAGCAGCAGCAGCAGCAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGATGCGGTGGCAAC------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACAACAATGACTGAA---GCGTGCCTCGAAACGGAAGTGGGCAAATCCAACCGTTTGTATGTCCC-------------------------------------------------ATT--------------------------------------------------------------------------------------------------------TCACATTTGC--------------------------------------------------------CAACAACAATAAAGC--------------------------------------C-TAA-------------------CCA---TGCCC---CTTCT---CTCCAC---------------GCAGAATCAAC-TTTATTAAGCGCCGCAACTCTGAGATAACC--G----------------CCAGCGGCAGC----A
droGri2	scaffold_15203:9559895-9560222 +		CTTGCCAACGAGC-----CGAG---------------------------------------------------------CAGCAGCAGCAGTCTCTCTGACGAGGACGACGAGTACTATTTCGATGGACGCAGTGGCAGCAACAACAACAA-------CATCAACATCAACAGCAACA---------ACAAC-----AACAACAGCATCAACGACAACGA---------CAACAACAATGACTGAA---GCGTGCCTCGAAACGGAAGCGGGCAAATCGAATCGCCTGTAAGTGCC-------------------------------------------------TT-----------------------------------------------------------------G---------------------------------------CCACATGTGG---C--------------------------------------ACTACTA--------------------TCTTCAAATTCCATCTGAGATCCATACAC-ACGACCACCCACCAACCAC-CCCACCCCTCTT----CACT----------------CCACCT---------------GCAGCATTAAC-TTTATCAAGCGCCGCAA------------------------------------CAGCAAC----A
droWil2	scf2_1100000004590:1962301-1962567 -		CTTGCC---GAGC-----CGAG---------------------------------------------------------CAGTAGCAGCAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGACGCAACAACAAC------------------AACAA-------------CA--------------GCAACAACAT------------CAACAA---------CAACAACAATGACTGAA---GCCCATCTCGAAATGGAAGTGGGCAAGTCAAAACGCTTGTAAGCCAA------AACGAACA------------------------------------------------------------------------------------------------------------TGTAG-------A---------------------G--------------------------------------------------------TA--------------------TCTATAGAATGTATCT-----C------C--------------------------------TTACGT---TTTC------------GATTTT---------------CTAGAATTAAC-TTTATCAAGCGACGCAATTCTGAAATAACG--G----------------CAAGTAGCAGC----A
dp5	XL_group1e:8487823-8488081 -		AGCAGC---AACA-----GTTG------------------------------------CAACAGCT------------------------------------------------GCAACTGCAACAGCAACAGCAGCAGA---------ATCAACAACAACAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGCAGCAACATTCACTAG---CAGCACTAG------------------------------------CACCAGTAATACCAGTAGCAAATACACTACAACTACAACT---------------ACAGCA----CCATC-------ATCAG--------CATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CAG-------------CCACAA----------------CCATCTCCATAATCAGCATCAACATCAGCAAC-ATCAGAATCAGAATCAACAACAACAACTCC--A----------------TCATCAACAAC----A
droPer2	scaffold_13:85324-85606 +		CACAAC---AACA-----ACAA---------------------------------------------------------CAGCAGCAACAGCAACAGTTGCAACAGCTGCAACTGCAACAGCAACAGCAGCAGAATCAAC------------------AACAA-------------CA--------------ACAGCAACAA------------CAACAA------CAACAACAACAACAGCAGCAGCAACATTCA---GTAGCAGCACTAG------------------------------------CACCAGTAATACCAGTAGCAAATACACTACAACTACAACT---------------ACAGCA----CCACCATCAGC-AT--------CAGCATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CAG-------------CCACAA----------------CCATCT---------------CCATAATCAGC-ATCAGCAACAACAACAACTCCATCAT---C--A----------------ACAACAACAAC----A
droAna3	scaffold_12929:2171602-2171757 -		CTGGCC---GAGC-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCACTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCAC---CA------------CCACCA---------CAACAACAATGACTGAG---GCGTTCCTCGAAACGGAGGCCGGCAAATCGAAGCGATTGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396022:4185-4466 -		GTCGCA---GCCGAAGTCCAAGCA------------------------------ACGCCAGCGTTG---------GCAGCGACGCCAGCAGCATGTCCAA----------------------AACAAGCACAGCCGCAGCAGCAGCAGCAGCACA---AGCAG----CAG------CA---------GCAGC-----GCAAG------------CAGCAG---------CGG-------------------------CGGCAGCAAGTGCAACAAATGCCGCCGATTTC-AGTGCA--------------------------------------TTCGA-TT---------------------------------------------------------------TTAAC-----------------------------------------------GATAGCTC-CGATAATTCC--GATACGCCTCTAGT------------------------------------------------------------G------CCA-----------------CGCCCACCCTTCTT----GAGC----------------CGAGCC---------------GCGGCAGCGGC-AGCAGCAG---CAGCGGCGGCAGCAG---C--T----------------GCAGCGGCCGCACTAA
droKik1	scf7180000302798:548554-548800 -		CTGGCC---GACC-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------CT--------------AC------------------------AA---------CCACAACAATGACTGAG---GCGTTCCTTGAGACCGATATAGGCAGGTCCAAAAGATTGTAAGTAAT---------------------------------------------------------------------------------------------------------------------------GGAG-------A---------------------G-------------ATATATATAT-------ATCTATGAT------------------------------------------------------------C------C--------------------------------TGACTA---TGTC------------CTGCTT---------------TTAGAATAAAC-TTCATAAAGCGTCGCAACTCTGAGATAACC--G----------------CCAGTAGCACC----A
droFic1	scf7180000453927:65286-65562 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCACTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCACCACAACAACAACAACAATGACTGAGGAGGCCTTCCTCGAGACCGAAGTGGGCCGATCGAAGCGATTGTGAGTATT-------------------------------------------------GC---------------------A----GGAGA-------GCCCGGATTGCATAGTTAATGCA----------ACCA-------------------------------------GTG-------------T-------ATCGA----------------------------------------------------------------------------------------------------------------------------------AAATT---------------ACAGGATGAAC-TTCATAAAGCGGCGCAACTCGGAGATAACC--G----------------CCAGTAGCACC----A
droEle1	scf7180000491011:570720-571017 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------GCCA------------------CAGTCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCGAAGCGATTGTGAGTATA-------------------------------------------------AAG---------------AACA---------------------------------------------------T-------------------AAAAGTGTGTACTGCTTAATCGTG---T--------------------------------------ATTACGATTAAAATAAAAAATAGTAAAAA--------------------------------------A-AAA-------------------CAA---TGTCG---TTAAC---CCGATT---------------GCAGAATGAAC-TTCATAAAGCGCCGCAACTCTGAGATAACC--G----------------CCAGTAGCACC----A
droRho1	scf7180000779488:485175-485484 +		GACAGG--GCGGC-----CGAGCAGCTGATTCAGCAGTTTGGCTTCGATTACTTACAGCAGCAGTT---------G---CAGCTGCAACAGCATCAACAGCAGCAACAGCAGC---------------------------------------------AACAG-------------CAGCAACAGCAGCAAC-----AG---------------CAGCAG---------CAGCAACAGCAGCAGCAGCAACATGAACAAGAACCACAATATGAACATCTT---------ACATACC---------------------------------------GA-----------------------------TTT--CAAC--AATCA--G-------------------------AGC-----------------------------------------------------CCACACATATGCAGCAA--------TTAGCTT------GTAACTA------TCAGCCACGACATTCC--------------------------------------A-CAA-------------------CCA---CGTCG---TCGCC---CTCATC---------------AAC----------------ACATTCGCTGGCCAGCGGCAGCAGCA----------------GCGTCAGCAGC----A
droBia1	scf7180000301760:4899729-4899995 +		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGTGGCAGCAGCATCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCCAAGCGATTGTGAGTATTCCCCTTATCCAGAA------------------------------------------------------------------------------------------------------------CTTAG-------G---------------------A--------------------------------------------------------AA--------------------ACCTTATACTTCATCT-----C------T--------------------------------TCACTA---T---------------GCCTTG---------------GCAGAATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A
droTak1	scf7180000415195:154187-154445 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCCAAGCGATTGTGAGTAAC--------------------------------------CAAAATCT---------------------------------------------------------------TTAAG-----------------------------------------------TAAAACTT-ATAAATATAT--AACTAACCC----------------------------------------------------------------------------------------------------------------------------------CAAACG---------------GTAGAATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A
droEug1	scf7180000409048:161368-161631 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGCAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCTAAGCGATTGTGAGTCGG--------------------------------------------CT---------------------------------------------------------------TTAAG--G---------------------------------------CTATATATATGTT-ATATATATAT-------------ATT--------------------------------------------------------------------CA-----------------AT---------A----TTTAAT----------------CGATCT---------------GCAGAATCAAC-TTTATAAAGCGTCGCAACTCCGAGATTACA--G----------------CCAGTAGCACC----A
dm3	chrX:2262889-2263157 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CCACAACAATGACTGAGGAGGCCTTCCTTGAGACCGAAGTGGGCAGATCTAAGCGCTTGTGAGTATT-------------------------------------------------ACT---------------CA----CACCAGACCACCA--G------------------------------ACATGGAG-------CA--AGTCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAC----------------CCATCC---------------GCAGGATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A
droSim2	x:2091310-2091578 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GC--------------ACCACAACCA------------CAACCA---------CCACAACAATGACTGAGGAGGCCTTCCTTGAGACCGAAGTGGGCAGATCGAAGCGCTTGTGAGTATT-------------------------------------------------ACT---------------CA----CACCAGACCACCG--G------------------------------ACATGGAG-------CA--AGTCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAC----------------CCCTCC---------------GCAGGATAAAC-TTTATTAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A
droSec2	scaffold_34:421819-422112 +		GCAGCA---GCAGCAGCA---A---------------------------------------CAGCAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGGTGCAGCACCAACAGCAGCAGCAAAAGC------------------TTCAG-------------TT--------------GCAG------------------CAACAA---------CAGCAGCA---------------------------------------TCAACACAACTCGAACAATT-------------------------------------------------TGATTGTCGGCCATCGGGGCAGCT----CCTCTGTCCAA-GG--------GCGCCTG--------ACCTCAGC-------------------------TGTAT-----------------------------------------------TCAGCCCCA----------------------------------------------------------------------------------------TCTC---------GCTGCC---CTCCTCGCT---------------GCAGAGTT--CCTTCGATGGCGACACCAACTCGGTGATGACC--AATTTCTCCATGATGGACTCGCCGCCGC----A
droYak3	X:6074266-6074545 +		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CAACAACAATGACTGAGGAGGCCTTCATCGAAACCGAAGTGGGCAGATCAAAGCGATTGTGAGTATT-------------------------------------------------ACT---------------TCATTA--CCAG--GACCA--G-------------------------ATCCCACATGGATTCA-TCTCATCTGTGAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------CCATCC---------------ACAGAATGAAC-TTTATTAAGCGCCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A
droEre2	scaffold_4644:2223013-2223302 -		CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CAACAACAATGACTGAGGAGGCCTTCCTCGAGACCGAAGTGGGCAGATCGAAACGATTGTGAGTATT-------------------------------------------------AAT---------------CCATTGCACCCGACCATCA--G------------------------------ACACG-ACTCATTCTCA--TGTGAAATGTGTGTA--------------------------------------------------------------------------------------------------------------C-GTG-----------------G-------------CTTAAT----------------CCCTCC---------------GCAGAATAAAC-TTTATTAAGCGTCGCAACTCCGAGATTACC--G----------------CCAGTAGCACC----A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CTCGACAACGAGC-----CGAG---------------------------------------------------------CAGCAGCAGTAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGACGCAGTGGCAGCAACAACACAAACACAAACAACAA-------------CA---------ACAAC-----AACAA------------TAGCAA---------CAAGAACAATGACTGAA---GCGTGCCTCGAAACCGAAGTGGGCAAATCAAACCGTTTGTACGTTTC--------------------------------------CGA---------T-----------------------------------------------------------------G---------------------------------------CCACATGTGGCAC-ACGCACATAT-------------ATTTAGTGTGCCCCA----------------------------------------------------------------------------------------TAAC---------CCGATC---TTCCTCTAT---------------GCAGAATCAAC-TTTATCAAGCGCCGCAACTCGGAGATAATA--G----------------CCAGCGGCAGC----A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................C-----AACAA------------TAGCAA---------CAAGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	1	0	0	0	0	0

droVir3

CTCGCCA--GCCACCACC---A---------------------------------------GGACGACGACGACAGCAGCAGCAGCAGCAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGATGCGGTGGCAAC------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACAACAATGACTGAA---GCGTGCCTCGAAACGGAAGTGGGCAAATCCAACCGTTTGTATGTCCC-------------------------------------------------ATT--------------------------------------------------------------------------------------------------------TCACATTTGC--------------------------------------------------------CAACAACAATAAAGC--------------------------------------C-TAA-------------------CCA---TGCCC---CTTCT---CTCCAC---------------GCAGAATCAAC-TTTATTAAGCGCCGCAACTCTGAGATAACC--G----------------CCAGCGGCAGC----A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................CGACAGCAGCAGCAGCAGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................C------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CA--------------AC------AA------------CAACAA---------CAACAACAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AC------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AC------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................C------------------CACAA-------------CA--------------AC------AA------------CAACAA---------CAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CGACAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CGACAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CTTGCCAACGAGC-----CGAG---------------------------------------------------------CAGCAGCAGCAGTCTCTCTGACGAGGACGACGAGTACTATTTCGATGGACGCAGTGGCAGCAACAACAACAA-------CATCAACATCAACAGCAACA---------ACAAC-----AACAACAGCATCAACGACAACGA---------CAACAACAATGACTGAA---GCGTGCCTCGAAACGGAAGCGGGCAAATCGAATCGCCTGTAAGTGCC-------------------------------------------------TT-----------------------------------------------------------------G---------------------------------------CCACATGTGG---C--------------------------------------ACTACTA--------------------TCTTCAAATTCCATCTGAGATCCATACAC-ACGACCACCCACCAACCAC-CCCACCCCTCTT----CACT----------------CCACCT---------------GCAGCATTAAC-TTTATCAAGCGCCGCAA------------------------------------CAGCAAC----A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................AACAA-------CATCAACATCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

droWil2

CTTGCC---GAGC-----CGAG---------------------------------------------------------CAGTAGCAGCAGTCTCTCTGACGAGGACGATGAGTACTACTTCGATGGACGCAACAACAAC------------------AACAA-------------CA--------------GCAACAACAT------------CAACAA---------CAACAACAATGACTGAA---GCCCATCTCGAAATGGAAGTGGGCAAGTCAAAACGCTTGTAAGCCAA------AACGAACA------------------------------------------------------------------------------------------------------------TGTAG-------A---------------------G--------------------------------------------------------TA--------------------TCTATAGAATGTATCT-----C------C--------------------------------TTACGT---TTTC------------GATTTT---------------CTAGAATTAAC-TTTATCAAGCGACGCAATTCTGAAATAACG--G----------------CAAGTAGCAGC----A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGACGCAATTCTGAAATAAC....................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................AAGTGGGCAAGTCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................ACAACAATGACTGAA---GCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
......................................................................................................................................AACAAC------------------AACAA-------------CA--------------GCAACAACAT------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	0	1	0	0

dp5

AGCAGC---AACA-----GTTG------------------------------------CAACAGCT------------------------------------------------GCAACTGCAACAGCAACAGCAGCAGA---------ATCAACAACAACAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGCAGCAACATTCACTAG---CAGCACTAG------------------------------------CACCAGTAATACCAGTAGCAAATACACTACAACTACAACT---------------ACAGCA----CCATC-------ATCAG--------CATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CAG-------------CCACAA----------------CCATCTCCATAATCAGCATCAACATCAGCAAC-ATCAGAATCAGAATCAACAACAACAACTCC--A----------------TCATCAACAAC----A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................T---------------ACAGCA----CCATC-------ATCAG--------CATC----------------------------------------------------------------------------------ACCACAG................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................ACATTCACTAG---CAGCACTAG------------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TACACTACAACTACAACT---------------ACAGCA----CC....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CAG-------------CCACAA----------------CCATCT............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AACATTCACTAG---CAGCACTAG------------------------------------CACC...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-ATCAGAATCAGAAT...................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAACTCC--A----------------T...............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................GCAACAGCAACAGCAGCAGA---------ATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACTCC--A----------------TCATCAA.........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTCC--A----------------TCATCAACAA......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CTACAACT---------------ACAGCA----CCATC-------AC........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACTCC--A----------------TCATCA..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACTCC--A----------------TCATCAACAAC----.	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAAC-ATCAGAATCAGAATC..................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AAATACACTACAACTACAACT---------------ACAGCA----......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTCCATAATCAGCATC..............................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TACAACTACAACT---------------ACAGCA----CCATC-------A.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................ACAGCAGCAGA---------ATCAACAACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CAG--------CATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CA......................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATCAACAACAACAACTCC--A----------------TCATC...........	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................CAGCAGA---------ATCAACAACAACAA-------------CA-----------------------------------------A---------CAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATCAACAACAACAACTCC--A----------------TCAT............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACATCAGCAAC-.................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GCA----CCATC-------ATCAG--------CATC----------------------------------------------------------------------------------ACCA...................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................CAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................AACAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................A---------ATCAACAACAACAA-------------CA-----------------------------------------A---------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................ACAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................CAA-------------CA-----------------------------------------A---------CAACAGCAACAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATCAACAACAACAA-------------CA-----------------------------------------A---------CAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................AACAACAA-------------CA-----------------------------------------A---------CAACAGCAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................A-----------------------------------------A---------CAACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................ACAACAACAA-------------CA-----------------------------------------A---------CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CACAAC---AACA-----ACAA---------------------------------------------------------CAGCAGCAACAGCAACAGTTGCAACAGCTGCAACTGCAACAGCAACAGCAGCAGAATCAAC------------------AACAA-------------CA--------------ACAGCAACAA------------CAACAA------CAACAACAACAACAGCAGCAGCAACATTCA---GTAGCAGCACTAG------------------------------------CACCAGTAATACCAGTAGCAAATACACTACAACTACAACT---------------ACAGCA----CCACCATCAGC-AT--------CAGCATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------CA-----------------CAG-------------CCACAA----------------CCATCT---------------CCATAATCAGC-ATCAGCAACAACAACAACTCCATCAT---C--A----------------ACAACAACAAC----A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................ACCATCAGC-AT--------CAGCATC----------------------------------------------------------------------------------ACCACAGC--------------------------------------------------------------------...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................AACAGCAGCAGAATCAAC------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTACAACTACAACT---------------ACAGC...........................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	1	0	0	0
..............................................................................................................................................................AACAA-------------CA--------------ACAGCAACAA------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................CAACAACAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................................ACAA------------CAACAA------CAACAACAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....AC---AACA-----ACAA---------------------------------------------------------CAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................ACAA------------CAACAA------CAACAACAACAACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................AA------CAACAACAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0

droAna3

CTGGCC---GAGC-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCACTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCAC---CA------------CCACCA---------CAACAACAATGACTGAG---GCGTTCCTCGAAACGGAGGCCGGCAAATCGAAGCGATTGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................GGAGCGGGAGC------------------CATCA-------------GT--------------ACCAC---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droBip1

GTCGCA---GCCGAAGTCCAAGCA------------------------------ACGCCAGCGTTG---------GCAGCGACGCCAGCAGCATGTCCAA----------------------AACAAGCACAGCCGCAGCAGCAGCAGCAGCACA---AGCAG----CAG------CA---------GCAGC-----GCAAG------------CAGCAG---------CGG-------------------------CGGCAGCAAGTGCAACAAATGCCGCCGATTTC-AGTGCA--------------------------------------TTCGA-TT---------------------------------------------------------------TTAAC-----------------------------------------------GATAGCTC-CGATAATTCC--GATACGCCTCTAGT------------------------------------------------------------G------CCA-----------------CGCCCACCCTTCTT----GAGC----------------CGAGCC---------------GCGGCAGCGGC-AGCAGCAG---CAGCGGCGGCAGCAG---C--T----------------GCAGCGGCCGCACTAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGGCC---GACC-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------CT--------------AC------------------------AA---------CCACAACAATGACTGAG---GCGTTCCTTGAGACCGATATAGGCAGGTCCAAAAGATTGTAAGTAAT---------------------------------------------------------------------------------------------------------------------------GGAG-------A---------------------G-------------ATATATATAT-------ATCTATGAT------------------------------------------------------------C------C--------------------------------TGACTA---TGTC------------CTGCTT---------------TTAGAATAAAC-TTCATAAAGCGTCGCAACTCTGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCACTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCACCACAACAACAACAACAATGACTGAGGAGGCCTTCCTCGAGACCGAAGTGGGCCGATCGAAGCGATTGTGAGTATT-------------------------------------------------GC---------------------A----GGAGA-------GCCCGGATTGCATAGTTAATGCA----------ACCA-------------------------------------GTG-------------T-------ATCGA----------------------------------------------------------------------------------------------------------------------------------AAATT---------------ACAGGATGAAC-TTCATAAAGCGGCGCAACTCGGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------GCCA------------------CAGTCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCGAAGCGATTGTGAGTATA-------------------------------------------------AAG---------------AACA---------------------------------------------------T-------------------AAAAGTGTGTACTGCTTAATCGTG---T--------------------------------------ATTACGATTAAAATAAAAAATAGTAAAAA--------------------------------------A-AAA-------------------CAA---TGTCG---TTAAC---CCGATT---------------GCAGAATGAAC-TTCATAAAGCGCCGCAACTCTGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GACAGG--GCGGC-----CGAGCAGCTGATTCAGCAGTTTGGCTTCGATTACTTACAGCAGCAGTT---------G---CAGCTGCAACAGCATCAACAGCAGCAACAGCAGC---------------------------------------------AACAG-------------CAGCAACAGCAGCAAC-----AG---------------CAGCAG---------CAGCAACAGCAGCAGCAGCAACATGAACAAGAACCACAATATGAACATCTT---------ACATACC---------------------------------------GA-----------------------------TTT--CAAC--AATCA--G-------------------------AGC-----------------------------------------------------CCACACATATGCAGCAA--------TTAGCTT------GTAACTA------TCAGCCACGACATTCC--------------------------------------A-CAA-------------------CCA---CGTCG---TCGCC---CTCATC---------------AAC----------------ACATTCGCTGGCCAGCGGCAGCAGCA----------------GCGTCAGCAGC----A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGTGGCAGCAGCATCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCCAAGCGATTGTGAGTATTCCCCTTATCCAGAA------------------------------------------------------------------------------------------------------------CTTAG-------G---------------------A--------------------------------------------------------AA--------------------ACCTTATACTTCATCT-----C------T--------------------------------TCACTA---T---------------GCCTTG---------------GCAGAATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCCAAGCGATTGTGAGTAAC--------------------------------------CAAAATCT---------------------------------------------------------------TTAAG-----------------------------------------------TAAAACTT-ATAAATATAT--AACTAACCC----------------------------------------------------------------------------------------------------------------------------------CAAACG---------------GTAGAATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTACTACTTCGATGGACGGAGCGGCAGC------------------CATCA-------------GT--------------ACCA------------------CAACCA---------CAACAACAATGACTGAGGAGGCATTCCTCGAGACCGAAGTGGGCAGATCTAAGCGATTGTGAGTCGG--------------------------------------------CT---------------------------------------------------------------TTAAG--G---------------------------------------CTATATATATGTT-ATATATATAT-------------ATT--------------------------------------------------------------------CA-----------------AT---------A----TTTAAT----------------CGATCT---------------GCAGAATCAAC-TTTATAAAGCGTCGCAACTCCGAGATTACA--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CCACAACAATGACTGAGGAGGCCTTCCTTGAGACCGAAGTGGGCAGATCTAAGCGCTTGTGAGTATT-------------------------------------------------ACT---------------CA----CACCAGACCACCA--G------------------------------ACATGGAG-------CA--AGTCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAC----------------CCATCC---------------GCAGGATAAAC-TTTATAAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCGTCGCAACTCCGAGA........................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGGCAGATCTAAGCGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TCTGACGAGGACGAGGAGTTCTACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CGGAGCGGGAGC------------------CATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TCGATGGACGGAGCGGGAGC------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC---------------GCAGGATAAAC-TTTATAAAGCGTC....................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAC----------------CCATCC---------------GC...........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGCGTCGCAACTCCGA..........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAG-------CA--AGTCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------C......................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AGACCACCA--G------------------------------ACATGGAG-------CA--AGTCC....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGGCAGATCTAAGCGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CGAGGAGTTCTACTTCGATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGGCAGATCTAAGCGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ACCACCA--G------------------------------ACATGGAG-------CA--A........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACAACCA------------CAACCA---------CCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CACAACCA------------CAACCA---------CCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATAAAC-TTTATAACT........................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GC--------------ACCACAACCA------------CAACCA---------CCACAACAATGACTGAGGAGGCCTTCCTTGAGACCGAAGTGGGCAGATCGAAGCGCTTGTGAGTATT-------------------------------------------------ACT---------------CA----CACCAGACCACCG--G------------------------------ACATGGAG-------CA--AGTCAAATGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAC----------------CCCTCC---------------GCAGGATAAAC-TTTATTAAGCGTCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................GTATT-------------------------------------------------ACT---------------CA----CACCAGACC.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGCAGCAGCCTCTCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCAGCA---GCAGCAGCA---A---------------------------------------CAGCAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGGTGCAGCACCAACAGCAGCAGCAAAAGC------------------TTCAG-------------TT--------------GCAG------------------CAACAA---------CAGCAGCA---------------------------------------TCAACACAACTCGAACAATT-------------------------------------------------TGATTGTCGGCCATCGGGGCAGCT----CCTCTGTCCAA-GG--------GCGCCTG--------ACCTCAGC-------------------------TGTAT-----------------------------------------------TCAGCCCCA----------------------------------------------------------------------------------------TCTC---------GCTGCC---CTCCTCGCT---------------GCAGAGTT--CCTTCGATGGCGACACCAACTCGGTGATGACC--AATTTCTCCATGATGGACTCGCCGCCGC----A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................CCAA-GG--------GCGCCTG--------ACCTCAGC-------------------------T...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------GCAGAGTT--CCTTCGATGGC........................................................	20	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGATGACC--AATTTC...........................	20	1	1.00	1	1	0	0	0
..........................................................................AACAACAGCAACAACAACAACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	1	0	0	0
.....................................................................................................................GCACCAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1
..AGCA---GCAGCAGCA---A---------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1
...GCA---GCAGCAGCA---A---------------------------------------CAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0

droYak3

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CAACAACAATGACTGAGGAGGCCTTCATCGAAACCGAAGTGGGCAGATCAAAGCGATTGTGAGTATT-------------------------------------------------ACT---------------TCATTA--CCAG--GACCA--G-------------------------ATCCCACATGGATTCA-TCTCATCTGTGAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------CCATCC---------------ACAGAATGAAC-TTTATTAAGCGCCGCAACTCCGAGATAACC--G----------------CCAGTAGCACC----A

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CTGGCC---CAAA-----CGAG---------------------------------------------------------CAGCTGCAGCAGCCTCTCTGACGAGGACGAGGAGTTCTACTTCGATGGACGGAGCGGGAGC------------------CATCA-------------GT--------------ACCACAACCA------------CAACCA---------CAACAACAATGACTGAGGAGGCCTTCCTCGAGACCGAAGTGGGCAGATCGAAACGATTGTGAGTATT-------------------------------------------------AAT---------------CCATTGCACCCGACCATCA--G------------------------------ACACG-ACTCATTCTCA--TGTGAAATGTGTGTA--------------------------------------------------------------------------------------------------------------C-GTG-----------------G-------------CTTAAT----------------CCCTCC---------------GCAGAATAAAC-TTTATTAAGCGTCGCAACTCCGAGATTACC--G----------------CCAGTAGCACC----A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................GGGCAGATCGAAACGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

dmo_784

scaffold_6473:14185956-14186154 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.8	-35.5	-35.4