ID:

dmo_781

 Coordinate:

scaffold_6473:13990307-13990457 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.9 1.0

Flybase annnotation

CDS [Dmoj\GI15905-cds]; exon [dmoj_GLEANR_16608:7]; intron [Dmoj\GI15905-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_5997:1472-1491 -
  2. scaffold_6359:1121832-1121851 -
  3. scaffold_6359:2803378-2803397 +
  4. scaffold_6359:4233416-4233435 -
  5. scaffold_6473:1237517-1237536 -
  6. scaffold_6473:3205304-3205323 +
  7. scaffold_6473:8032303-8032322 +
  8. scaffold_6473:10175172-10175191 +
  9. dmo_781  scaffold_6473:13990369-13990388 +
  10. scaffold_6473:14091284-14091303 -
  11. scaffold_6496:18692490-18692509 +
  12. scaffold_6496:26088527-26088546 -
  13. scaffold_6500:4538023-4538042 +
  14. scaffold_6540:18597328-18597347 -
  15. scaffold_6654:1857958-1857977 +
star
  1. scaffold_6308:3260552-3260573 +
  2. dmo_781  scaffold_6473:13990333-13990354 +
  3. scaffold_6496:1978111-1978132 +
  4. scaffold_6496:2442842-2442863 +
  5. scaffold_6496:16397112-16397133 +
  6. scaffold_6496:22646350-22646371 +
  7. scaffold_6500:4803110-4803131 +
  8. scaffold_6500:5902271-5902292 -
  9. scaffold_6500:21810654-21810675 -
  10. scaffold_6500:22976586-22976607 +
  11. scaffold_6500:27339642-27339663 +
  12. scaffold_6540:5176006-5176027 +
  13. scaffold_6540:16945993-16946014 +
  14. scaffold_6540:20774963-20774984 +
  15. scaffold_6540:26520665-26520686 +
  16. scaffold_6540:33257127-33257148 +
  17. scaffold_6541:1039782-1039803 +
  18. scaffold_6654:1822224-1822245 +
  19. scaffold_6680:5723823-5723844 +
  20. scaffold_6680:18151472-18151493 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCTGCTGCAGGCCGCCCAGCGACGGCATCAGAAGAACTCGGTTCTCACAAGTACGTATATCACAATGGAGCAAATACATACACACGCACACACACACACACACACGCACACACACACACATGCATACACATACATTGTCAAAATTCTGGAGGGGATCTGATCGAGCATCCGATTGGGGTCAACCCGCTGGCAGTGGCAACCGCATCGAACCGCTTGGAGCGCGTTTCACTGTTTTGTTGTAATTTTGGAGC
****************************************************************************........................................................*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M046
female body
 M060
embryo
.....................................................................................................................................................................................................................TTGCAGCGTGTTTCACTGGTTT................ 22 3 1 1.00 1 1 0 0
.....................................................................................................................................................................................................................CTGGAGCGTGTTTCACTGGTT................. 21 3 5 0.20 1 1 0 0
..............................................................................................................................................AATCTGGAGGGGAACTCAT.......................................................................................... 19 3 12 0.08 1 0 1 0
................................................................................................................CACACACATGCATACACATA....................................................................................................................... 20 0 15 0.07 1 0 1 0
......................................................................................................................................................................ATCTTATTGGGGTCCACCC.................................................................. 19 3 17 0.06 1 0 0 1
............................................................................CATACACACGCACACACACACA......................................................................................................................................................... 22 0 20 0.05 1 0 0 1

Anti-sense strand reads

CGACGACGTCCGGCGGGTCGCTGCCGTAGTCTTCTTGAGCCAAGAGTGTTCATGCATATAGTGTTACCTCGTTTATGTATGTGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTACGTATGTGTATGTAACAGTTTTAAGACCTCCCCTAGACTAGCTCGTAGGCTAACCCCAGTTGGGCGACCGTCACCGTTGGCGTAGCTTGGCGAACCTCGCGCAAAGTGACAAAACAACATTAAAACCTCG
***********************************************************************************************************************........................................................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
..................................................................CCTCTTTTATGTGTGTGTGC..................................................................................................................................................................... 20 2 8 0.13 1 1 0
.........................................................................................................................................................CTAGACTAGCTAGCAGCCT............................................................................... 19 3 15 0.07 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:13990257-13990507 + dmo_781 GCTGCTGCAGG----CCGCCCAGC----GA--C--GGCA-TCAG----AAGAACTCGGTTCTCACAAGTACGTATA-------TCAC-----A-------ATGG------------------------------------------------------------------------------AGCAAATACATA-------CAC----AC---GCACAC----ACA------C----------A------------C------AC-ACACACGC------ACA----CA------------------------------------C--A-----------------------------CACA--C-------ATGCATA--CACA----------TACATT-----------------------------GT-CAAA------------------------------------------------ATTCTG----------------------------------------------------------------------------------------------GAG---G-------------------------------------------------------------------------------------GGATCTGATC-----------------------------------------------------------------------------------------------GAGCATCCGATTGGGGTCAACCCGCTGGCA-GTGGCA-ACCGCATCG-----------------------------------AACCGCTTGGAGC----GCGTTTCAC---------------------TGTTTT-------------------------------------------------G--------------------------------TTGTAAT---TTTGGAGC
droVir3 scaffold_12928:143098-143331 + GATA-GGCAGG----CAGCTAGGCAGACG-GAGGCTG--TG-C----------------------------------ACTATAGTGCTA-ACA------------------------------------------------------------------------------------------------------CTAATACAC----ACACA-----C----ACA----------------CA------------C------AC-ACACACACACACACA------CA------------------------C------ACACACACA-------------------------------CA--C-------ACA--CACACACA----------CACATG-----------------------------TA-------------------------------------------------------------------------------------TA---------------------------------------------------AACCGCT------------TAACAATGCCACT---------------------------------------------------------------------TCC---------------------------GTTTTGGCATGCGGTTT-------------------A-----------C----------------------------------------------------CCC-GCTCGG-TCGCCG-GCTTCATG---------------GTTAGACATCA---------------GTCGT-------TG--GTCAT---------------------------------------------------------------------------T--GT---TGTTGCTGTTGT------------------------TGTTTTTG
droGri2 scaffold_14853:9544585-9544819 + GTGGCTCCAAGGGGGCACCGGAGC----GA--A--GGTA-GCAA----AGGGGAT-------TACATA-------------------------------------------------------------------------------------------------------------------------------CAAGTACAA----GCACA-----C----ACA----------------CA------------C------AC-ACACACATACACACA------CA------------------------C------ACACACACA-------------------------------CATAT-------GTGCACA--CTCG----------CACATA-----------------------------AA-CAGAAGCATG----GGCGCTCCGA------CTTG--------------------------------------------------------C-----ACAATCGGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------T-----------C----------------------------------------------------ACC-TCGACA-ACGGCA-GCGCCAGCA-----------------------------------AA--------AGT----GTGGCCTACTTTTTGGGGCAACGGCGGCAA-----------------------------------------------------------------------------------CA-------CCTTATTCATATGC
droWil2 scf2_1100000004909:9503645-9503872 - CCTCTTGCAGG----CGGCACAGC----GT--A--GACA-GCAA----AAGAATTCTGTTTTAACAAGTAAGTAT----------------------------------------------------------------------------------------------------------A-------------A----ACAC----AC---A--CAC--ACACA----CACACA------CACAC------A----------G-GCAGACA--------------CA------------------------CCAACAAA-----------------------------------------CAC-------ACACACA--CACAGACACAGACATACAGA-----------------------------TG-------------------------------------------------------------------------------------AAAAA-----TCC----------------------------------------------A------------AAA-------------------------------------------------------------------------------------CAATCTAATCCAAATTCAAATGGAAGCTCTGGGCACTTGCAGG--CGGC-----------------------------------------------------------------------------------------GTCA-ACTGCTCAA-----------------------------------AACTGCTTGGA--------------------------------------------------------------------------------------------------------------------------------------ACATGTTT
dp5 4_group3:6401445-6401625 - ACGA---------------------------------------------------------------GTATCTATA-------T--------------------------------------------------------------------------------------------------------------------CCAC----AC-------------GCG----TATACNCGCACGCG------------CTCCTCC-C-CCACACA--------------CA------------------------CACAC--A-----------------------------------------CAC-------ACACACA--CACACACACACTCACACAGA-----------------------------GG---------------------------------------------------------TAGTGCCTAC------------------TAAAAGT-----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCAGATCAGTTCAAACTCTCGACTGAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------CTCT--C--GAGGCGCGCAATATGTCG-------------------C--TGTC---ATTTTGGG
droPer2 scaffold_13:1079668-1079842 - CTCAC----------------------------------------------------------ATAGCACAGTACA-------GTACAGCACA-------GCAG------------------------------------------------------------------------AGCACA-------------G----ACAC----TC---T--TTC----ACAC----------------A------------C------AC-ACACACAC------ACACACACACAGACACA----------------T------ACATAT--G-----------------------------CATA--GTTTT--------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGAGAATCTCAAG---------------------------------------------------------------------TCG---------------------------AGTGTGGCATACAATCAGG--CGTCTCTGGCTATAC------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------TATATCT---------------------GTGAT---GTTTATGT
droAna3 scaffold_12929:326557-326726 + CATA--------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------GGCTG-------------------CCAC-------------AC----ACACACACACACAC------A--------------------C-ACA--TAC------A------TA------------------------C------TAATACTAA-----------------------------------C-------ACTCATA--CACA----------TACAGA-----------------------------TG-------CAATGGCGTCTCTATTAA------ATTCATCTGTGCCAC----------------------------------------------------------------------------------------------------------------CA-AATTGCCATC---------GCAGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------GTTAAT-GGCC---------------------AGCCTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGCT---TTGTCACT
droBip1 scf7180000396589:1908825-1908994 - ACAA---------------------------------------------------------------ACACAT-------------------------------------------------------------------------------------------------------------------------------GCAC----TAACA-----C----ATA----------------CG------------C------ACGGCATACTC------ACACA--CA----CAC------------------------A----C--ACATGCGCATTGCCAAATTGATTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------AGCAGCTAATTGATAAATTGATGAATGAAGTCAACAACAA----ACAAATATGAAGC------------------------------------------------------------------CCA---------------------------------------------------------------CC-TAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGATAATTTG-------------------T-ATAAA---TTAAAAGA
droKik1 scf7180000298055:11678-11898 - GTTT--------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------GGCGCG-------------G----GCAC----AC---A--CAC----ACAC----------------A------------C------AC-ACACACAC------ACACATACA------------------------C------ACA--------------------------------------------------CACACA--CACA----------CTCATTAGGGTACGCCAACCACACTCTCATACTAATA-----------------------------------------------------------------------------------------------------------------------CTATATAGGGGACCGCCCAGGCCCAAGATTTTTGTAATTGTGACTCTCACC---------------------------------------------------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTACTTAGATGCGTAGTGCTATAAACAAAATAACTAGAGTTTTAA--GTTGTTTC--------------------------------TCCT---TTTTCAAC
droFic1 scf7180000454017:132104-132279 - CAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----GCGCACATACACA-----C----ACA----------------CA------------C------AC-AAA--CAC------A------CACAAACACA----------------C------ACATAC--A-----------------------------CACA--ATTTC---------------------------GCAA------------------------------------------CAGCAAGTTCTCCTA------ACTGAAGTGAGACACGCACACA--------------T---------------------------------TCTTGTTTCAGATTGAAGCA-----------------GAG----------------------ACACGCATT--------T-AGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAA-------------------------------------------------GTTAAT--------------------GGCCTCAGCGTTTT-------------------------------------------------G--------------------------------TCCTG--------ATTTT
droEle1 scf7180000491087:1049742-1049883 + CACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATACAC----ACACA-----C----ACA----------------CA------------C------AC-ACACACACACACACA------CA------------------------C------ACACACACA-------------------------------CACAC---------A--GACACACC----------CACA----------------------------------------------------------------------------------------------------TGCTTACGCACATAGACATA---------------------------------------------------GACCCAC------------TCAC---------------------ACTTGCACAGTGTAAAACTGGAGCGTGAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTGT
droRho1 scf7180000777610:149674-149876 - TTGGCAATTGGCAGGCGACAGA------GA--C--GGCC-TCCGGCCAC-----------------GCCCATTTCGCACTATATAA--------------ATTA------------------------------------------------------------------------------ATCAATTACAGA-------CCT----AT---GCACAC----ATA------C----------A-----------------------GAC--------------------------------------------------A--------CATACGCCCCCGCAGAGCAATAACATTTGCGAT--CCTTT--------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGACGAGCGCAAGGA------------------------------------------------------------------------------------------------------------------GGACC--------------------------------------------------------------------------------------------------------A---------------GTTGGCCATCA---------------AACGG-------TG----------------------------------------------------------------------------CAGCTCA--GCTGTC-----AATTGG------------------------AGTTGTCG
droBia1 scf7180000301703:423353-423570 - GGCT-GG-------------------------------------------------------CATAAGTAAATATA-------TTACAGGATGCCAATAAGTGA------------------------------AAAGGATATT---------------------------------------------------------TAC----AC---A--CAC--ACACA----CACACAC------ACAC------AGGCATACAA-C-TAACTAG--------------CA------------------------CCTAC--A-----------------------------------------CAC-------GTACACC--CCCG--------------C----------------------------------------------------------------------------------------------------------CCACACAAGCACA---------------------------------------GGGGGCAGCA---------------------------------TC---------GCATCAGC-----------------------------A---GCTTTTCAAAGTGTTAAC------------------------------------------------------------------CCATTCGTCGTCACCTTTTTGCCCCAAACATATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAA---TTTAACGC
droTak1 scf7180000415877:369450-369604 + CAAA--------------------------------------------------------------------------------------------------GG------------------------------------------------------------------------AGCAAA-------------A----GCAC----TC---G--CAC----ACAC----------------A------------C------AC-ACCCACCC------ACCCATCCA------------------------C------A----C--A-----------------------------CACA---------------CA--TA--------------TAG-------------------------------------------------------CATACATAGCGGTGG----------------------------C------------------GAAAAAAATATCG-------GTCGC----------------------------AATCGGA------------AAA-AAATGCAAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCGACAGC-------------------------------------------------GGCGAC--------------------GGCGGCAG-----------------------------------------------------------------------------------AA-------CTC---TCTCTGCT
droEug1 scf7180000409110:1194633-1194799 + ATAG---------------------------------------------------------------GAGTATATA-------TCAC-----A------GATGA------------------------------AGCAGCTCAT---------------------------------------------------------CAC----AC-------ACACACACA----CACACAC------A--------------------C-TCG------------------CA------CACA--------------C------AAA--T--G-----------------------------CACT--CTGTCCACTCGCATA--CACT----------GG----------------------------------------------------------CATGTACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATAG----GCGTACATGTGAC------------------------------------------------------------------CCGTATTAAGCCATCAATGGGATACAAGCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---GTTTAATT
dm3 chrX:4244563-4244812 - GCTGTTGCTGTTCGGTCATAAA-------------------------------------------------------------------------------------------------------TTTC-ATTTAGGAGACGAC---------------------------------------------------G----ACAG-------------AC----AAACAAACAAATAC------G--------------------T-CAC--TCT------A------TC----------ATTCTGCCTCCAACCTTAT--A----T--ATATACACCCTGGTATATGGAACATAT---------------------------------------------------------------------------------------------------------ATAGAC-----GTGCCAT-------ATGTCG-----------------------------GG-----TTA-------------------------------------------------------AAGGGAATATATAGAAGGG------------------------------------------------------------------------------------------------------------------GGCGT--------------------------------------------------------------------------------------------------------G---------------GCCGGTCGGTGACAATAAATCTAGCGCATGG-------AA----------------------------------------------------------------------------CAAATGC--GTTTCG-----AGTCGAAGACGGCGACTTTGATCCACA---AATGGCGC
droSim2 x:5977549-5977707 - AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTCAC----ACACA-----C----ATA----------------CA------------C------AC-ACACACAT------ACA----CA----CACA----------------C------ACA--------------------------------------------------TACACA--CACA----------CACACT-----------------------------GA-CAGA------------------------------------------------GAGACAGAGAGAGC------------------CACAACC-----ACAGACAAAT-------TAATACCATAAAGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------C--TAAATGTAACGATAC------------------------------------------------------------------------------------------T------------------------------------------------------------TT---------------------TTTTTT-------------------------------------------------G--------------------------------TCAAATT---CCTAGCAC
droSec2 scaffold_45:67928-68091 + GTGC-TGTGGG----CAGCAAGGT----GAGAGGCT---CG-CATCATA-----------------GCACATTACC-------ATT-------------CATGA------------------------------AATGCAATTT------------CACAGCCAAAGTATACACAAAGCACA-------------G----GCGC----AC---A--TAG----ATA----------------CA--------AA--G--TGC-CC-ATACACA--------------CA------------------------CTAACACA---------------------------------------CA--C-------ACGCACA--CACA----------CATATG-----------------------------GA-CAAA------------------------------------------------AGGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droYak3 X:19643735-19643945 + ACAA---------------------------------------------------------------GTATGCGCA-------ATT-----------------------------------AAAATTTG-----------------------------------------------------ATTTAATACAAAT-----GCAC----TC---A--CAC----ACCC----------------A------------C------AC-ACCCACAC------ACACATGCA------------------------C------AGAGGCAAA-------------------------------T-----------ACATATA--CAGA----------GA--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAAGGACCGGGACT-----------------------------------------------------------TGTGTTTGTTTGCATTCGTAT-------------------------T-------------------T-----------G----------------------------------------------------CCTGTTTGCTGGTGGCACACAGTATCCAATTTCGGAAATTACTTGCGCATCA---------------TC---------------------------------------------G-------------------------------------------------G--------------------------------TTGGAAA---TTCCTTGA
droEre2 scaffold_4770:6673565-6673855 + GAAA--------------------------------------------------------------------------------------------------AATCTTTCAATTTGCCAAAAAAATTTACATTTTAGAGGCAAAATTGAATGATTACACAGCATACA----------------------------TATGTACAT----ACATA-----T----GTA----------------CATACATACATA--C------GT-ACATACAT------ACATACGTA------------------------C------ATA--------------------------------------------------CATACA--TACA----------TACATACATACATGCCCACAACATGTAAATATTTATGAT-AAATT----GTAGATTTTTCGG------ATTGAATTACCAGGCGATCATA--------------A----------------------TC-----AGCAGCAGGT-------TGCTACCGAAAACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGTT-------------------------------------------------------------------------------------------------------------------------------------------GGTCACCTTCTGGAATTC---------------------------------------------------------CTGTTCGC--------------------------------CTGGTAA---TTCAAACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCTGCTGCAGG----CCGCCCAGC----GA--C--GGCA-TCAG----AAGAACTCGGTTCTCACAAGTACGTATA-------TCAC-----A-------ATGG------------------------------------------------------------------------------AGCAAATACATA-------CAC----AC---GCACAC----ACA------C----------A------------C------AC-ACACACGC------ACA----CA------------------------------------C--A-----------------------------CACA--C-------ATGCATA--CACA----------TACATT-----------------------------GT-CAAA------------------------------------------------ATTCTG----------------------------------------------------------------------------------------------GAG---G-------------------------------------------------------------------------------------GGATCTGATC-----------------------------------------------------------------------------------------------GAGCATCCGATTGGGGTCAACCCGCTGGCA-GTGGCA-ACCGCATCG-----------------------------------AACCGCTTGGAGC----GCGTTTCAC---------------------TGTTTT-------------------------------------------------G--------------------------------TTGTAAT---TTTGGAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................C--A-----------------------------CACA--C-------ATGCATA--CACA----------TA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071100000
..............................................................................................................................................................................................CATA-------CAC----AC---GCACAC----ACA------C----------A------------C------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
droVir3
GATA-GGCAGG----CAGCTAGGCAGACG-GAGGCTG--TG-C----------------------------------ACTATAGTGCTA-ACA------------------------------------------------------------------------------------------------------CTAATACAC----ACACA-----C----ACA----------------CA------------C------AC-ACACACACACACACA------CA------------------------C------ACACACACA-------------------------------CA--C-------ACA--CACACACA----------CACATG-----------------------------TA-------------------------------------------------------------------------------------TA---------------------------------------------------AACCGCT------------TAACAATGCCACT---------------------------------------------------------------------TCC---------------------------GTTTTGGCATGCGGTTT-------------------A-----------C----------------------------------------------------CCC-GCTCGG-TCGCCG-GCTTCATG---------------GTTAGACATCA---------------GTCGT-------TG--GTCAT---------------------------------------------------------------------------T--GT---TGTTGCTGTTGT------------------------TGTTTTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................AATACAC----ACACA-----C----ACA----------------CA------------C------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------T--GT---TGTTGCTGTTGT------------------------TGTTT...21200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTTGT------------------------TGTTTTTG18200.051000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CACA------CA------------------------C------ACACACACA-------------------------------CA--C-------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
droGri2
GTGGCTCCAAGGGGGCACCGGAGC----GA--A--GGTA-GCAA----AGGGGAT-------TACATA-------------------------------------------------------------------------------------------------------------------------------CAAGTACAA----GCACA-----C----ACA----------------CA------------C------AC-ACACACATACACACA------CA------------------------C------ACACACACA-------------------------------CATAT-------GTGCACA--CTCG----------CACATA-----------------------------AA-CAGAAGCATG----GGCGCTCCGA------CTTG--------------------------------------------------------C-----ACAATCGGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------T-----------C----------------------------------------------------ACC-TCGACA-ACGGCA-GCGCCAGCA-----------------------------------AA--------AGT----GTGGCCTACTTTTTGGGGCAACGGCGGCAA-----------------------------------------------------------------------------------CA-------CCTTATTCATATGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCTCTTGCAGG----CGGCACAGC----GT--A--GACA-GCAA----AAGAATTCTGTTTTAACAAGTAAGTAT----------------------------------------------------------------------------------------------------------A-------------A----ACAC----AC---A--CAC--ACACA----CACACA------CACAC------A----------G-GCAGACA--------------CA------------------------CCAACAAA-----------------------------------------CAC-------ACACACA--CACAGACACAGACATACAGA-----------------------------TG-------------------------------------------------------------------------------------AAAAA-----TCC----------------------------------------------A------------AAA-------------------------------------------------------------------------------------CAATCTAATCCAAATTCAAATGGAAGCTCTGGGCACTTGCAGG--CGGC-----------------------------------------------------------------------------------------GTCA-ACTGCTCAA-----------------------------------AACTGCTTGGA--------------------------------------------------------------------------------------------------------------------------------------ACATGTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ACGA---------------------------------------------------------------GTATCTATA-------T--------------------------------------------------------------------------------------------------------------------CCAC----AC-------------GCG----TATACNCGCACGCG------------CTCCTCC-C-CCACACA--------------CA------------------------CACAC--A-----------------------------------------CAC-------ACACACA--CACACACACACTCACACAGA-----------------------------GG---------------------------------------------------------TAGTGCCTAC------------------TAAAAGT-----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCAGATCAGTTCAAACTCTCGACTGAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------CTCT--C--GAGGCGCGCAATATGTCG-------------------C--TGTC---ATTTTGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTCAC----------------------------------------------------------ATAGCACAGTACA-------GTACAGCACA-------GCAG------------------------------------------------------------------------AGCACA-------------G----ACAC----TC---T--TTC----ACAC----------------A------------C------AC-ACACACAC------ACACACACACAGACACA----------------T------ACATAT--G-----------------------------CATA--GTTTT--------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------GAATTGAGAATCTCAAG---------------------------------------------------------------------TCG---------------------------AGTGTGGCATACAATCAGG--CGTCTCTGGCTATAC------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------TATATCT---------------------GTGAT---GTTTATGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CATA--------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------GGCTG-------------------CCAC-------------AC----ACACACACACACAC------A--------------------C-ACA--TAC------A------TA------------------------C------TAATACTAA-----------------------------------C-------ACTCATA--CACA----------TACAGA-----------------------------TG-------CAATGGCGTCTCTATTAA------ATTCATCTGTGCCAC----------------------------------------------------------------------------------------------------------------CA-AATTGCCATC---------GCAGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------GTTAAT-GGCC---------------------AGCCTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGCT---TTGTCACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGC............21118.00180001017
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGCT---........22115.00150000015
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGCT---........2012.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGCT---........2112.002000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GG.............2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGG............2111.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA------------------------------------GTCT--G--GGTGGGTG--------------------------------GGC............1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--G--GGTGGGTG--------------------------------GGCT---TTGT....1911.001000001
droBip1
ACAA---------------------------------------------------------------ACACAT-------------------------------------------------------------------------------------------------------------------------------GCAC----TAACA-----C----ATA----------------CG------------C------ACGGCATACTC------ACACA--CA----CAC------------------------A----C--ACATGCGCATTGCCAAATTGATTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------AGCAGCTAATTGATAAATTGATGAATGAAGTCAACAACAA----ACAAATATGAAGC------------------------------------------------------------------CCA---------------------------------------------------------------CC-TAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGATAATTTG-------------------T-ATAAA---TTAAAAGASizeHit CountTotal NormTotal
No Reads
droKik1
GTTT--------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------GGCGCG-------------G----GCAC----AC---A--CAC----ACAC----------------A------------C------AC-ACACACAC------ACACATACA------------------------C------ACA--------------------------------------------------CACACA--CACA----------CTCATTAGGGTACGCCAACCACACTCTCATACTAATA-----------------------------------------------------------------------------------------------------------------------CTATATAGGGGACCGCCCAGGCCCAAGATTTTTGTAATTGTGACTCTCACC---------------------------------------------------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTACTTAGATGCGTAGTGCTATAAACAAAATAACTAGAGTTTTAA--GTTGTTTC--------------------------------TCCT---TTTTCAACSizeHit CountTotal NormTotal
No Reads
droFic1
CAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----GCGCACATACACA-----C----ACA----------------CA------------C------AC-AAA--CAC------A------CACAAACACA----------------C------ACATAC--A-----------------------------CACA--ATTTC---------------------------GCAA------------------------------------------CAGCAAGTTCTCCTA------ACTGAAGTGAGACACGCACACA--------------T---------------------------------TCTTGTTTCAGATTGAAGCA-----------------GAG----------------------ACACGCATT--------T-AGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAA-------------------------------------------------GTTAAT--------------------GGCCTCAGCGTTTT-------------------------------------------------G--------------------------------TCCTG--------ATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATACAC----ACACA-----C----ACA----------------CA------------C------AC-ACACACACACACACA------CA------------------------C------ACACACACA-------------------------------CACAC---------A--GACACACC----------CACA----------------------------------------------------------------------------------------------------TGCTTACGCACATAGACATA---------------------------------------------------GACCCAC------------TCAC---------------------ACTTGCACAGTGTAAAACTGGAGCGTGAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTGGCAATTGGCAGGCGACAGA------GA--C--GGCC-TCCGGCCAC-----------------GCCCATTTCGCACTATATAA--------------ATTA------------------------------------------------------------------------------ATCAATTACAGA-------CCT----AT---GCACAC----ATA------C----------A-----------------------GAC--------------------------------------------------A--------CATACGCCCCCGCAGAGCAATAACATTTGCGAT--CCTTT--------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGACGAGCGCAAGGA------------------------------------------------------------------------------------------------------------------GGACC--------------------------------------------------------------------------------------------------------A---------------GTTGGCCATCA---------------AACGG-------TG----------------------------------------------------------------------------CAGCTCA--GCTGTC-----AATTGG------------------------AGTTGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
GGCT-GG-------------------------------------------------------CATAAGTAAATATA-------TTACAGGATGCCAATAAGTGA------------------------------AAAGGATATT---------------------------------------------------------TAC----AC---A--CAC--ACACA----CACACAC------ACAC------AGGCATACAA-C-TAACTAG--------------CA------------------------CCTAC--A-----------------------------------------CAC-------GTACACC--CCCG--------------C----------------------------------------------------------------------------------------------------------CCACACAAGCACA---------------------------------------GGGGGCAGCA---------------------------------TC---------GCATCAGC-----------------------------A---GCTTTTCAAAGTGTTAAC------------------------------------------------------------------CCATTCGTCGTCACCTTTTTGCCCCAAACATATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAA---TTTAACGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAAA--------------------------------------------------------------------------------------------------GG------------------------------------------------------------------------AGCAAA-------------A----GCAC----TC---G--CAC----ACAC----------------A------------C------AC-ACCCACCC------ACCCATCCA------------------------C------A----C--A-----------------------------CACA---------------CA--TA--------------TAG-------------------------------------------------------CATACATAGCGGTGG----------------------------C------------------GAAAAAAATATCG-------GTCGC----------------------------AATCGGA------------AAA-AAATGCAAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCGACAGC-------------------------------------------------GGCGAC--------------------GGCGGCAG-----------------------------------------------------------------------------------AA-------CTC---TCTCTGCTSizeHit CountTotal NormTotal
No Reads
droEug1
ATAG---------------------------------------------------------------GAGTATATA-------TCAC-----A------GATGA------------------------------AGCAGCTCAT---------------------------------------------------------CAC----AC-------ACACACACA----CACACAC------A--------------------C-TCG------------------CA------CACA--------------C------AAA--T--G-----------------------------CACT--CTGTCCACTCGCATA--CACT----------GG----------------------------------------------------------CATGTACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATAG----GCGTACATGTGAC------------------------------------------------------------------CCGTATTAAGCCATCAATGGGATACAAGCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---GTTTAATTSizeHit CountTotal NormTotal
No Reads
dm3
GCTGTTGCTGTTCGGTCATAAA-------------------------------------------------------------------------------------------------------TTTC-ATTTAGGAGACGAC---------------------------------------------------G----ACAG-------------AC----AAACAAACAAATAC------G--------------------T-CAC--TCT------A------TC----------ATTCTGCCTCCAACCTTAT--A----T--ATATACACCCTGGTATATGGAACATAT---------------------------------------------------------------------------------------------------------ATAGAC-----GTGCCAT-------ATGTCG-----------------------------GG-----TTA-------------------------------------------------------AAGGGAATATATAGAAGGG------------------------------------------------------------------------------------------------------------------GGCGT--------------------------------------------------------------------------------------------------------G---------------GCCGGTCGGTGACAATAAATCTAGCGCATGG-------AA----------------------------------------------------------------------------CAAATGC--GTTTCG-----AGTCGAAGACGGCGACTTTGATCCACA---AATGGCGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AA----------------------------------------------------------------------------CAAATGC--GTTTCG-----AGGTT.................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droSim2
AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATTCAC----ACACA-----C----ATA----------------CA------------C------AC-ACACACAT------ACA----CA----CACA----------------C------ACA--------------------------------------------------TACACA--CACA----------CACACT-----------------------------GA-CAGA------------------------------------------------GAGACAGAGAGAGC------------------CACAACC-----ACAGACAAAT-------TAATACCATAAAGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------C--TAAATGTAACGATAC------------------------------------------------------------------------------------------T------------------------------------------------------------TT---------------------TTTTTT-------------------------------------------------G--------------------------------TCAAATT---CCTAGCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTAACGATAC------------------------------------------------------------------------------------------T------------------------------------------------------------.................................................................................................................................1512.00200000000110000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------GA-CAGA------------------------------------------------GAGACAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
droSec2
GTGC-TGTGGG----CAGCAAGGT----GAGAGGCT---CG-CATCATA-----------------GCACATTACC-------ATT-------------CATGA------------------------------AATGCAATTT------------CACAGCCAAAGTATACACAAAGCACA-------------G----GCGC----AC---A--TAG----ATA----------------CA--------AA--G--TGC-CC-ATACACA--------------CA------------------------CTAACACA---------------------------------------CA--C-------ACGCACA--CACA----------CATATG-----------------------------GA-CAAA------------------------------------------------AGGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACAA---------------------------------------------------------------GTATGCGCA-------ATT-----------------------------------AAAATTTG-----------------------------------------------------ATTTAATACAAAT-----GCAC----TC---A--CAC----ACCC----------------A------------C------AC-ACCCACAC------ACACATGCA------------------------C------AGAGGCAAA-------------------------------T-----------ACATATA--CAGA----------GA--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAAGGACCGGGACT-----------------------------------------------------------TGTGTTTGTTTGCATTCGTAT-------------------------T-------------------T-----------G----------------------------------------------------CCTGTTTGCTGGTGGCACACAGTATCCAATTTCGGAAATTACTTGCGCATCA---------------TC---------------------------------------------G-------------------------------------------------G--------------------------------TTGGAAA---TTCCTTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GAAA--------------------------------------------------------------------------------------------------AATCTTTCAATTTGCCAAAAAAATTTACATTTTAGAGGCAAAATTGAATGATTACACAGCATACA----------------------------TATGTACAT----ACATA-----T----GTA----------------CATACATACATA--C------GT-ACATACAT------ACATACGTA------------------------C------ATA--------------------------------------------------CATACA--TACA----------TACATACATACATGCCCACAACATGTAAATATTTATGAT-AAATT----GTAGATTTTTCGG------ATTGAATTACCAGGCGATCATA--------------A----------------------TC-----AGCAGCAGGT-------TGCTACCGAAAACCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGTT-------------------------------------------------------------------------------------------------------------------------------------------GGTCACCTTCTGGAATTC---------------------------------------------------------CTGTTCGC--------------------------------CTGGTAA---TTCAAACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GTAGATTTTTCGG------ATTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.00201010990
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GTAGATTTTTCGG------ATTGAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.55110100460
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ATTGAATTACCAGGCGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4594000500
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGG------ATTGAATTACCAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.4080000107
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGTT-------------------------------------------------------------------------------------------------------------------------------------------GGTCACCTTCTGGA.......................................................................................................................25200.4080000008
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ATTGAATTACCAGGCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3570000070
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT----GTAGATTTTTCGG------ATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3064010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAATT----GTAGATTTTTCGG------ATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.2221000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT----GTAGATTTTTCGG------ATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040000400
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GTAGATTTTTCGG------ATTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000130
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------ATTGAATTACCAGGCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1532000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAATT----GTAGATTTTTCGG------ATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1411000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAATT----GTAGATTTTTCGG------ATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.1110000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCGG------ATTGAATTACCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GTAGATTTTTCGG------ATTGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1021000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTACCAGGCGATCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTTTCGG------ATTGAATTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTTTTCGG------ATTGAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTC---------------------------------------------------------CTGTTCGC--------------------------------CTGGT.............21200.1022000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGC--------------------------------CTGGTAA---TTCAAACC20200.1022000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTACCAGGCGATCATT--------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----GTAGATTTTTCGG------ATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTCGG------ATTGAATTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG------ATTGAATTACCAGGCGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTC---------------------------------------------------------CTGTTCGC--------------------------------CTGGTAA---T.......21200.0511000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT----GTAGATTTTTCGG------AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGG------ATTGAATTACCAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGTT-------------------------------------------------------------------------------------------------------------------------------------------GGTCACCTTC...........................................................................................................................21200.0511000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----GTAGATTTTTCGG------ATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----GTAGATTTTTCGG------ATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG------ATTGAATTACCAGGCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GTAGATTTTTCGG------ATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTTCGG------ATTGAATTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATTC---------------------------------------------------------CTGTTCGC--------------------------------CTGGT.............22200.0511000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG------ATTGAATTACCAGGCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG------ATTGAATTACCAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GTAGATTTTTCGG------ATTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGG------ATTGAATTACCAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ATTGAATTACCAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010

Generated: 05/17/2015 at 11:04 PM