dmo_780

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+
(TATATG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAACCCAAGTGAGGTCCCATCGAGCGTAACTGTAGGTACTCCCATAGGCTACACACACACACCCACCCACCCACACACACACCCACCCATACACACACACACATATGCGCACATCATATATACATATATACTAAAGAGAAACATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGCATCACCTGAACAGCATCGGAGCCAAATTTGCTGAAGATCCGGCTCAAGCAGAGCGTCATCGAG *************************************************.............................................................*****************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V049 head	V056 head
...............CCCATGGAGCTTTACTGTAG........................................................................................................................................................................................................................	20	3	3	21.33	64	42	22	0	0
...............CCCATGGAGCTTTACTGTA.........................................................................................................................................................................................................................	19	3	11	5.09	56	27	28	0	1
................CCATGGAGCTTTACTGTAG........................................................................................................................................................................................................................	19	3	13	3.46	45	33	10	2	0
...................................................................................................................................................................................TGTATATGCATCACCTGAACAGCAT...............................................	25	0	1	1.00	1	0	1	0	0
.....................................................................................CCCATACACACACACACATATGCGCAC...........................................................................................................................................	27	0	1	1.00	1	0	1	0	0
...................................................CACACACACACCCACCCACCC...................................................................................................................................................................................	21	0	6	0.33	2	0	2	0	0
..............CCCCATCGAGCTTTACTGT..........................................................................................................................................................................................................................	19	3	4	0.25	1	0	1	0	0
....................................................ACACACACACCCACCCACCCA..................................................................................................................................................................................	21	0	6	0.17	1	0	1	0	0
......................................................ACACACACCCACCCACCCA..................................................................................................................................................................................	19	0	6	0.17	1	0	1	0	0

TTTGGGTTCACTCCAGGGTAGCTCGCATTGACATCCATGAGGGTATCCGATGTGTGTGTGTGGGTGGGTGGGTGTGTGTGTGGGTGGGTATGTGTGTGTGTGTATACGCGTGTAGTATATATGTATATATGATTTCTCTTTGTACATATACATATACATATACATATACATATACATATACATATACGTAGTGGACTTGTCGTAGCCTCGGTTTAAACGACTTCTAGGCCGAGTTCGTCTCGCAGTAGCTC *****************************************************************************************************************************************.............................................................*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	V110 male body
..................................................................................................................................................TATACATATACATATACATATACA.................................................................................	24	0	20	0.10	2	2	0	0
........................................................................................................................................................TATACATATACATATACATATACA...........................................................................	24	0	20	0.10	2	2	0	0
..........................................................TGTGGGTGGGTGGGTGTGTGT............................................................................................................................................................................	21	0	11	0.09	1	0	1	0
......................................................................GGTTTGTGTGTGGGTGGG...................................................................................................................................................................	18	1	17	0.06	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:13989959-13990209 +	dmo_780	AAACC----------------CAAG-TGAGGTCCCATCGAGCG-----------------------TAA-----------------------------------------------------------CTGTAGGTACTCCCATAG-----GCT------A--------------CA--------CA-------------------------C---------ACACA---CCCACCCACCCACACA------CA----------CACCCACC-----------------------------------------CATA-----------------CA------CACACACACAT--A--------TGCGCA--CAT-CATAT--------------------------------ATACATATAT----A--CTAAAGAGAAACATGTATATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGCATCAC--------------C-TG--------------------------------------------------------------------------AACAGCATCGGAGCCAAATTTGCTGAAGA-----------TCCGGCTCA--AGCAGAGCG-------------------------------------------TCATCGAG
droVir3	scaffold_12928:2210162-2210375 +	dvi_8609	AGAAC---------------------TGAAGTCTAGACAAAAG--------------------------------------------------------------------------------------------TATGGGTCGAAAGG----TC------AAGACAG--C------------AATG-------------------------TCTAGAC---T-------CAATCTCAAACA----------CAC--------ACACACACA-----------------------------------------CATG---------GACACATGGA------CACACAAATTA--C--------------CA------------------TAACTA-TATCTA--GC--A---TATGAT---------------------ATATGTATATATGTATG--------------------------------------------------------------------TGTA---------TATC-------------------------------------------------------TGCAT-------------------------------------------------------------------------------------------------CAGCATCGGAGCCGAATCTGCTGAAGA-----------TACGACTCA--AGCAGAGCG-------------------------------------------TCATCGAG
droGri2	scaffold_15252:8642144-8642333 +		AACTG----------------CAAA-----------------------------------------------------------------------------------------------------TGG------------------------TTCGATTC------G--A------------TACA-------------------------CATAGAC---G-------CAC--TCACACACA--------CAC--------ACACCCACA-----------------------------------------CACA---------CACACACACA------CACACACCCAC--ACA--------------CA------------CACA------------------C--------ACACAG---T-------------ATAAGT----------------------------------------------------------------TTAAATGTGTGTCTGTGTATCTA-----AATT-------------------------------------------------------GTAGG-------------------------------------------------------------------------------------------------TAGCACAGGCATGTATCTTAATGAAGGCAATTTGCTTGTCGAGTTTA--GGC-------------------------------------------------------AA
droWil2	scf2_1100000004729:2263401-2263610 +		GTAGG----------------TGAT-----------------------------------------------------------------------------------------------------GACTCT------------------------GACTA------T--ATACATA-------------------------------------CATAC---A-------TAC--ATACATA--CA------TATGTACAT--ACATATATCAGGCATACATACATTATTACATATTTACATACATACAT-----------------------------------------AT--A----------TATA--AAG----T----------------GC-----AGACATACA--------------A-------------ACATTTATACGTACATACATACATACATACATA----------------------------------------------------CATA---------TGTATA---------------------------------------------------TATGTATAACG-------------------------------------------------------------------------------------------AAAAA-------------CT---------------TCC--------------------TACCA--------------------------------GTTGCCGATCAACGGG
dp5	XL_group1e:1055190-1055341 -		CTATT--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------CCT------------------------------------------CCCC-------CCCCCCCCCCCGCACA------TA----------CACCCACA-----------------------------------------C-CA---------CACACACACA------CACACACTTAC--ACCCG----------------------------------------------------------------------------AACAAA------ATATATATGTATA----------------------------------------------TGTCTGAATATATGTATGTGTA---------TATG------TG---------------------------------------------TCACAAC-CC--------------CCCAAAAA-------------------------------------------------------------------------------AAAACCAAATATTTTGAA----------------------------------------------------------------------------------AA
droPer2	scaffold_14:204103-204251 -		AG----------------------------------------------------------------------CA-----------------------------------------------------C---AA----------------CTAAC------A--------------TACATACATAGATATATACATATATACACATATATAT----------A-------TTTT-----------------------------------------------------ACAATTTATTTATATACATACAC-----------------------------------------------------ATGTATA--CAT-CATAT--------------------------ATACA--------------T-------------ACATGTATATATATATATATATATATATATATA----------------------------------------------------CAGA---------TACATA---------------------------------------------------TATGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:2680415-2680626 -		ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACG------------------------------------------CACA-------CACACACGCACA----------CAC--------ACACGCACA-------CA--------------CACACGCAC-----------------------------ACA------CACACGCACA--------------------CACACACGCACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------CA---------CACA--CACACACACA------------------------------CACACTCCAGATACT--G----------------------------TAT-------------------------------CTAC------CCAGCAGTACCAATCGCCCCGGAATCACCCT-GG------ATTCACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAAC
droBip1	scf7180000392928:5474-5642 -		TCATGCGCAACCGGCCGCACCT---------------------------------------------G----TA-----------------------------------------------------T----------------A-----TGAT------A--------------TGTATATGTATATGTATATGT---------------------------------------ATATGTA--TA------TG--TATATGTATATGTATA-------TG--------------TATATGTATATGTAT-----------------------------------------------------ATGTATA--TGTATATGT--------------------------ATATG--------------T-------------ATATGTATATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302621:392352-392488 -		ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACA------------------------------------------CACA-------CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CACACAC-------ACA------CACACACACAC--A----------------CACA----------C--------------------------ACACACACAC----A---------------------------------------CAGAGA----AGGACACACAAAAATAAATGGGTTTCCATGTGTATGAATGTGTGTATCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454077:1100400-1100594 -		CA----------------------------------------------------------------------TC-----------------------------------------------------C----------------------------------------------ATC--------CA-------------------------------------------C----CCACACA----------CAC--------GCACACTCA-----------------------------------------CGCA---------CACTCACCCA------CACACACACTA--C--------------TA------------------CTACTA-CCACCA--CC--A---TAACAAATAC----A---------------------------------------CTGGGA----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGAATGACCGAAAACGAAGCAGTGGAGGCGATTC---CACATCATCCATTTCGGAAACGCTCTCGGAGTCGACGCTCGAGTGCA-----------TGCGAC-----AGCAG---G-------------------------------------------TCATCCGG
droEle1	scf7180000490214:1159625-1159819 -		TA----------------------------------------------------------------------CT-----------------------------------------------------C----------------------------------------------ACA--------GACACACACAC---------------------------------------ACACACA--CA------CA--CACACACACACACACA-------CA-----------------------------------------------------CA------CACACACACACAC--------ACACACA--C--------ACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------------------------------------------------------------------------------CTCAA-GAGCAAACGCACACATAGGCAAAAACACTGGGAGAAAAGGAT-------------------------------------------------------TCAGGGAGTCTGCAGACGAGTTGT------C----CCCAGCTCA--AGCAGTGCAGCA------------------------------------------------
droRho1	scf7180000777040:5049-5261 +		CC----------------------------------------------------------------------CAGATGAGCGTTCATAATGTGTGCTTAATTATCGCAGAGATATATGTATATACTACCC--------------------------------------------CCA--------ACCCAACACAC-----------------ACACAC---A-------CAC--ACACACACA--------CAC--------ACACACACA-------CA--------------------------------CACACACA-----------CACA------CACACACACAC--A--------------------------CACACACA------------------C--------------ACAC-------------ACACACA--------------------CACACACACA--------------------------------------------------CA---------CACACA--CACACACATGTATATCAATGACCATGAAGGGGGCGCAGCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droBia1	scf7180000302193:855849-856048 +		ATGAA--------------------AATAAGCAGAGGCAAAATTGCATTGAATGTCAAGCGGTACGCA----CA-----------------------------------------------------CAC--------------------------------------------ACA--------CACACACACAC---------------------------------------ACACACA--CA------CA--CACACACACACACACA-------CA-----------------------------------------------------CA------CACACACACACAC--------ACACACA--C--------ACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------------------------------------------------------------------------------CACAC-ACACACACACACACACACACAGAAACAC-------------------------------------------------------------------------------ACACA---------------CCG--------------------CAGCA--------------------------------AC------------TG
droTak1	scf7180000415381:115441-115586 +		ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACA------------------------------------------CACA-------CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CACACAC-------ACA------CACACACACAC--A----------------TACTGATCCC--------------------------CACAAACAA------TCAAACGTTAAGGTATATT------------ACG------------TATA----------------------------------------------------CGTA---------T-----TACGTA---------------------------------------------TACGTAA----------------------------TGT-------------------------------TTGC------TTAACGTG---------------AGC----------------------------------------------------------------------------------------------------------GG
droEug1	scf7180000409509:250773-250965 +		TA----------------------------------------------------------------------CA-----------------------------------------------------CTC--------------------------------------------ACA--------GGCGGACATAA---------------------TC---G--AACTAC----ACACA------------CAC--------ACACACACA-------CA--------------------------------CAGA---------CACAGACG-AAACACACACACACACAA--A--------------------------------CACAAGG-GC-----------------------G------------------GTATGCAGATATATATATATA----CACGAAAA----------------------------------------------------TATA--TATATTATATA------CG---------------------------------------------TCAGCAA-------------------------------------------------------------------------------TACG------------AATAAC------------ATTAATAATAA-----------TACT------------------------------------------ATGCAATAAAGCGAGGAGGAGTGAG
dm3	chr3R:20979291-20979433 +		TGGGA--------------------------------------------------------------------------------------------------------------------------T----------------------------------------------ACA------------------------------------------AGCA-------CACTCCCACACA----------CAA--------GCACACACA-----------------------------------------TACA---------CACACACAGA------CTCACACACAT--GTCCGGTCATCTATT--GCT-TAAAT--------------------------TTAAG--------------A-------------ATGTGTATATATGCATG------------TATT----------------------------------------------------CGTT---------TGTA------TG---------------------------------------------TACGCAACCT--------------G-TG--------------------------------------------------------------------------AACAAT-------------------------------------------------------------------------------------------------------AT
droSim2	4:34962-35117 +		GTATA--------------------------------------------------------------------------------------------------------------------------TCTCTAAGTATTGTCATAAAAA----T------AAATACACGTATTCTCA--------GTTACATATGT--------------AC----------A-------TTTTCTCATCCAAA---------------------------------------------------CTCATGTATATGCATATGTACA--TA---------------------CA------------------------------------T--------------------------ATATG--------------C-------------ATATGTACATACATATGTATGTATGTATGTACA----------------------------------------------------TACA---------TATGTA---------------------------------------------------TGTACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_4:2321218-2321387 +		TCTCA-------------------------------CAGTGCA-----------------------TAGCTGCA-----------------------------------------------------C---AAAATACTGCCATATTCGCC----------TACA----------CA-----------------------------------C---------ACACA---CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CA-------------CA------CACACACACAC--A-----------------------------------------------------------------------------------------CACACACACACACACACACACACACACACACACACACACACA--------------------CACATGAATCTATTAATTTGT----------TATG------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTG--------------------------------------------------------------------------------------
droYak3	X:2584162-2584320 +		ATGTA--------------------------------------------------------------------------------------------------------------------------T----------------------------------------------ATG------------------------------------------TATA-------TGTATATGTATA----------TGT--------ATATGTATA-----------------------------------------TGTA--TATGTAT-------ATG------TATATGTA-------------------------------------------------------------------------------------------------TATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGTATAGCG-------------------------------------------------------------------------------------------------------ATTAAACGT-----------------------------------ATTGTTGTCAGGGCGATTACTGATACTACCACTCG-----------ATCAGAGCG
droEre2	scaffold_4770:6673933-6674134 +		TA----------------------------------------------------------------------CA-----------------------------------------------------T----------------------------------------------ATG--------TAC----------------------------------A-------TACATACATACGTACATACATACAT--------ACATACATA-------CA-----------------------------------------------------TA------CATATATTCAT--A----------------CATTCATTCATACATACA------------------T--------------ACAT-------------ACATACATACATA--------------------CATA--------------------------------------------------CA---------TACA--TACATACATA------------------------------CAAAATGTAAATATTTAT------------------------------------------------------------------GGTAAA-------------------TTG-TAGAGTTTTCGGATTGAATTACCAGGCGA-----------TCATAATCAGCAGCAGGTTG-------------------------------------------CTACCGAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AAACC----------------CAAG-TGAGGTCCCATCGAGCG-----------------------TAA-----------------------------------------------------------CTGTAGGTACTCCCATAG-----GCT------A--------------CA--------CA-------------------------C---------ACACA---CCCACCCACCCACACA------CA----------CACCCACC-----------------------------------------CATA-----------------CA------CACACACACAT--A--------TGCGCA--CAT-CATAT--------------------------------ATACATATAT----A--CTAAAGAGAAACATGTATATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGCATCAC--------------C-TG--------------------------------------------------------------------------AACAGCATCGGAGCCAAATTTGCTGAAGA-----------TCCGGCTCA--AGCAGAGCG-------------------------------------------TCATCGAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------------------------------------------------TATGCATCAC--------------C-TG--------------------------------------------------------------------------AACAGCAT.......................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CC-----------------------------------------CATA-----------------CA------CACACACACAT--A--------TGCGCA--C...................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................CA--------CA-------------------------C---------ACACA---CCCACCCACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	2	0	0	0	0	0
................................................................................................................................................................................A--------CA-------------------------C---------ACACA---CCCACCCACCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	1	0	0	0	0	0
..........................................................................................................................................................................................A-------------------------C---------ACACA---CCCACCCACCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	1	0	0	0	0	0

droVir3

AGAAC---------------------TGAAGTCTAGACAAAAG--------------------------------------------------------------------------------------------TATGGGTCGAAAGG----TC------AAGACAG--C------------AATG-------------------------TCTAGAC---T-------CAATCTCAAACA----------CAC--------ACACACACA-----------------------------------------CATG---------GACACATGGA------CACACAAATTA--C--------------CA------------------TAACTA-TATCTA--GC--A---TATGAT---------------------ATATGTATATATGTATG--------------------------------------------------------------------TGTA---------TATC-------------------------------------------------------TGCAT-------------------------------------------------------------------------------------------------CAGCATCGGAGCCGAATCTGCTGAAGA-----------TACGACTCA--AGCAGAGCG-------------------------------------------TCATCGAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGCCGAATCTGCTGAAGA-----------TA.....................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAGCCGAATCTGCTGAAGA-----------.......................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAAACA----------CAC--------ACACACACA-----------------------------------------CAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................C--------ACACACACA-----------------------------------------CATG---------GACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.12	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCAAACA----------CAC--------ACACACACA-----------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AACTG----------------CAAA-----------------------------------------------------------------------------------------------------TGG------------------------TTCGATTC------G--A------------TACA-------------------------CATAGAC---G-------CAC--TCACACACA--------CAC--------ACACCCACA-----------------------------------------CACA---------CACACACACA------CACACACCCAC--ACA--------------CA------------CACA------------------C--------ACACAG---T-------------ATAAGT----------------------------------------------------------------TTAAATGTGTGTCTGTGTATCTA-----AATT-------------------------------------------------------GTAGG-------------------------------------------------------------------------------------------------TAGCACAGGCATGTATCTTAATGAAGGCAATTTGCTTGTCGAGTTTA--GGC-------------------------------------------------------AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................................................................................................................................................CACA------CACACACCCAC--ACA--------------CA------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0

droWil2

GTAGG----------------TGAT-----------------------------------------------------------------------------------------------------GACTCT------------------------GACTA------T--ATACATA-------------------------------------CATAC---A-------TAC--ATACATA--CA------TATGTACAT--ACATATATCAGGCATACATACATTATTACATATTTACATACATACAT-----------------------------------------AT--A----------TATA--AAG----T----------------GC-----AGACATACA--------------A-------------ACATTTATACGTACATACATACATACATACATA----------------------------------------------------CATA---------TGTATA---------------------------------------------------TATGTATAACG-------------------------------------------------------------------------------------------AAAAA-------------CT---------------TCC--------------------TACCA--------------------------------GTTGCCGATCAACGGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................ACTA------T--ATACATA-------------------------------------CATAC---A-------TAC--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.42	5	0	3	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTACATACATACATACATACA.................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................ACTA------T--ATACATA-------------------------------------CATAC---A-------TA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

dp5

CTATT--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------CCT------------------------------------------CCCC-------CCCCCCCCCCCGCACA------TA----------CACCCACA-----------------------------------------C-CA---------CACACACACA------CACACACTTAC--ACCCG----------------------------------------------------------------------------AACAAA------ATATATATGTATA----------------------------------------------TGTCTGAATATATGTATGTGTA---------TATG------TG---------------------------------------------TCACAAC-CC--------------CCCAAAAA-------------------------------------------------------------------------------AAAACCAAATATTTTGAA----------------------------------------------------------------------------------AA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AG----------------------------------------------------------------------CA-----------------------------------------------------C---AA----------------CTAAC------A--------------TACATACATAGATATATACATATATACACATATATAT----------A-------TTTT-----------------------------------------------------ACAATTTATTTATATACATACAC-----------------------------------------------------ATGTATA--CAT-CATAT--------------------------ATACA--------------T-------------ACATGTATATATATATATATATATATATATATA----------------------------------------------------CAGA---------TACATA---------------------------------------------------TATGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACG------------------------------------------CACA-------CACACACGCACA----------CAC--------ACACGCACA-------CA--------------CACACGCAC-----------------------------ACA------CACACGCACA--------------------CACACACGCACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------CA---------CACA--CACACACACA------------------------------CACACTCCAGATACT--G----------------------------TAT-------------------------------CTAC------CCAGCAGTACCAATCGCCCCGGAATCACCCT-GG------ATTCACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACCC.....................................................	26	17	1.94	33	11	22	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACC......................................................	25	17	1.88	32	6	26	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCCT-GG------..............................................................................................	26	20	1.15	23	23	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCCT-G.....................................................................................................	25	20	0.85	17	17	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCCT-GG------A.............................................................................................	27	20	0.80	16	14	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTGGA-----------TCCGCCCGG--ATCACCC.....................................................	25	17	0.76	13	2	11	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAAC	27	17	0.59	10	4	6	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTGGA-----------TCCGCCCGG--ATCACC......................................................	24	17	0.35	6	1	5	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCAC.......................................................	24	17	0.29	5	1	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCCCCGGAATCACCCT-GG------AT............................................................................................	25	20	0.25	5	3	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACCCC....................................................	27	16	0.25	4	1	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACCAATCGCCCCGGAATCACCCT-G.....................................................................................................	28	20	0.20	4	4	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTGGA-----------TCCGCCCGG--ATCACCCC....................................................	26	16	0.19	3	1	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................ACACGCAC-----------------------------ACA------CACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0
....A--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACG------------------------------------------CACA-------CACACACGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................ACACGCACA----------CAC--------ACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................ACACGCACA--------------------CACACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................ACACGCACA-------CA--------------CACACGCAC-----------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAA.	26	17	0.18	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CACGCAC-----------------------------ACA------CACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
...............................................................................................................................C----------------------------------------------ACG------------------------------------------CACA-------CACACACGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................CACGCACA----------CAC--------ACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................CACGCACA-------CA--------------CACACGCAC-----------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CACGCACA--------------------CACACACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GG------ATTCACCCTGGA-----------TCCGCCCGG--A...........................................................	25	16	0.13	2	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA-----------TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------.....	26	16	0.13	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGGA-----------TCCGCCCGG--ATCACCC.....................................................	24	17	0.12	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATC.........................................................	22	18	0.11	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................ACACGCAC-----------------------------ACA------CACACGCACA--------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
....A--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACG------------------------------------------CACA-------CACACACGCACA----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................ACACGCACA-------CA--------------CACACGCAC-----------------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................ACACGCACA--------------------CACACACGCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCCCCGGAATCACCCT-GG------..............................................................................................	23	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................ACACGCACA----------CAC--------ACACGCACA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACCAATCGCCCCGGAATCACCC........................................................................................................	26	20	0.10	2	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------CCAGCAGTACCAATCGCCCCGGA...............................................................................................................	25	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------G..........................................	29	16	0.06	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GG------ATTCACCCTGGA-----------TCCGCCCGG--AT..........................................................	26	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA-----------TCCGCCCGG--ATCACCCCG--------GA----------------.........................	24	16	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCT-GG------ATTCACCCTGGA-----------TCCGCCC................................................................	28	16	0.06	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCT-GG------ATTCACCCTGGA-----------TCCGC..................................................................	26	16	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCT-GG------ATTCACCCTGGA-----------TCCGCC.................................................................	26	16	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------C..........................................	29	16	0.06	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------G..........................................	28	16	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGGA-----------TCCGCCCGG--ATCACCCC....................................................	25	16	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-----------TCCGCCCGG--ATCACCCCG--------GA----------------A........................	24	16	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGGA-----------TCCGCCCGG--ATCACCCCG--------...........................................	26	16	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCA........................................................	23	17	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCTGGA-----------TCCGCCCGG--ATCACCA.....................................................	26	17	0.06	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCCGG--ATCACCCCG--------GA----------------AT------------------CC...	24	17	0.06	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTGGA-----------TCCGCCCGG--ATCAC.......................................................	23	17	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAAC	25	18	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGG--ATCACCCCG--------GA----------------AT------------------CCA..	23	18	0.06	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCCGG--ATCACCCCG--------GA----------------AT------------------CCAAC	26	18	0.06	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCCT-GG------ATTCACCCTGGA-----------C......................................................................	23	19	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACCCT-GG------ATTCACCCTGGA-----------TC.....................................................................	25	19	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCT-GG------ATTCACCCTGGA-----------TCC....................................................................	24	19	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCAATCGCCCCGGAATCACCCT-G.....................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATCGCCCCGGAATC............................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCAATCGCCCCGGAATCACCCT-......................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAATCGCCCCGGAATCACCCT-G.....................................................................................................	26	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCCCCGGAATCACCCT-GG------ATT...........................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTACCAATCGCCCCGGAATCA...........................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTACCAATCGCCCCGGAAT.............................................................................................................	24	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCCCCGGAATCACCCT-GG------A.............................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCCT-GG------T.............................................................................................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCC........................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACCCT-GG------ATT...........................................................................................	29	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATCGCCCCGGAATCACCCT-GG------A.............................................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATCGCCCCGGAATCACCCT-GG------AC............................................................................................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATC............................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCGCCCCGGAATCACCCT-GG------A.............................................................................................	25	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATCGCCCCGGAATCACCCT-G.....................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CACACGCACACACACA------------------C--------------ACAC-------------................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCCCCGGAATCACCCT-GG------AG............................................................................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATCGCCCCGGAATCACC.........................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

TCATGCGCAACCGGCCGCACCT---------------------------------------------G----TA-----------------------------------------------------T----------------A-----TGAT------A--------------TGTATATGTATATGTATATGT---------------------------------------ATATGTA--TA------TG--TATATGTATATGTATA-------TG--------------TATATGTATATGTAT-----------------------------------------------------ATGTATA--TGTATATGT--------------------------ATATG--------------T-------------ATATGTATATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACA------------------------------------------CACA-------CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CACACAC-------ACA------CACACACACAC--A----------------CACA----------C--------------------------ACACACACAC----A---------------------------------------CAGAGA----AGGACACACAAAAATAAATGGGTTTCCATGTGTATGAATGTGTGTATCTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA----------------------------------------------------------------------TC-----------------------------------------------------C----------------------------------------------ATC--------CA-------------------------------------------C----CCACACA----------CAC--------GCACACTCA-----------------------------------------CGCA---------CACTCACCCA------CACACACACTA--C--------------TA------------------CTACTA-CCACCA--CC--A---TAACAAATAC----A---------------------------------------CTGGGA----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGAATGACCGAAAACGAAGCAGTGGAGGCGATTC---CACATCATCCATTTCGGAAACGCTCTCGGAGTCGACGCTCGAGTGCA-----------TGCGAC-----AGCAG---G-------------------------------------------TCATCCGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TA----------------------------------------------------------------------CT-----------------------------------------------------C----------------------------------------------ACA--------GACACACACAC---------------------------------------ACACACA--CA------CA--CACACACACACACACA-------CA-----------------------------------------------------CA------CACACACACACAC--------ACACACA--C--------ACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------------------------------------------------------------------------------CTCAA-GAGCAAACGCACACATAGGCAAAAACACTGGGAGAAAAGGAT-------------------------------------------------------TCAGGGAGTCTGCAGACGAGTTGT------C----CCCAGCTCA--AGCAGTGCAGCA------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CC----------------------------------------------------------------------CAGATGAGCGTTCATAATGTGTGCTTAATTATCGCAGAGATATATGTATATACTACCC--------------------------------------------CCA--------ACCCAACACAC-----------------ACACAC---A-------CAC--ACACACACA--------CAC--------ACACACACA-------CA--------------------------------CACACACA-----------CACA------CACACACACAC--A--------------------------CACACACA------------------C--------------ACAC-------------ACACACA--------------------CACACACACA--------------------------------------------------CA---------CACACA--CACACACATGTATATCAATGACCATGAAGGGGGCGCAGCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGAA--------------------AATAAGCAGAGGCAAAATTGCATTGAATGTCAAGCGGTACGCA----CA-----------------------------------------------------CAC--------------------------------------------ACA--------CACACACACAC---------------------------------------ACACACA--CA------CA--CACACACACACACACA-------CA-----------------------------------------------------CA------CACACACACACAC--------ACACACA--C--------ACACACACA------------------C--------------ACAC-------------ACACACACACACA--------------------CACA--------------------------------------------------------------------------------------------------------------------------CACAC-ACACACACACACACACACACAGAAACAC-------------------------------------------------------------------------------ACACA---------------CCG--------------------CAGCA--------------------------------AC------------TG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACACA--------------------------------------------------------------------------------------------------------------------------C----------------------------------------------ACA------------------------------------------CACA-------CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CACACAC-------ACA------CACACACACAC--A----------------TACTGATCCC--------------------------CACAAACAA------TCAAACGTTAAGGTATATT------------ACG------------TATA----------------------------------------------------CGTA---------T-----TACGTA---------------------------------------------TACGTAA----------------------------TGT-------------------------------TTGC------TTAACGTG---------------AGC----------------------------------------------------------------------------------------------------------GG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TA----------------------------------------------------------------------CA-----------------------------------------------------CTC--------------------------------------------ACA--------GGCGGACATAA---------------------TC---G--AACTAC----ACACA------------CAC--------ACACACACA-------CA--------------------------------CAGA---------CACAGACG-AAACACACACACACACAA--A--------------------------------CACAAGG-GC-----------------------G------------------GTATGCAGATATATATATATA----CACGAAAA----------------------------------------------------TATA--TATATTATATA------CG---------------------------------------------TCAGCAA-------------------------------------------------------------------------------TACG------------AATAAC------------ATTAATAATAA-----------TACT------------------------------------------ATGCAATAAAGCGAGGAGGAGTGAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGGA--------------------------------------------------------------------------------------------------------------------------T----------------------------------------------ACA------------------------------------------AGCA-------CACTCCCACACA----------CAA--------GCACACACA-----------------------------------------TACA---------CACACACAGA------CTCACACACAT--GTCCGGTCATCTATT--GCT-TAAAT--------------------------TTAAG--------------A-------------ATGTGTATATATGCATG------------TATT----------------------------------------------------CGTT---------TGTA------TG---------------------------------------------TACGCAACCT--------------G-TG--------------------------------------------------------------------------AACAAT-------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................CAA--------GCACACACA-----------------------------------------TACA---------CACACACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CACACACA-----------------------------------------TACA---------CACACACAGA------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ACACACA-----------------------------------------TACA---------CACACACAGA------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTATA--------------------------------------------------------------------------------------------------------------------------TCTCTAAGTATTGTCATAAAAA----T------AAATACACGTATTCTCA--------GTTACATATGT--------------AC----------A-------TTTTCTCATCCAAA---------------------------------------------------CTCATGTATATGCATATGTACA--TA---------------------CA------------------------------------T--------------------------ATATG--------------C-------------ATATGTACATACATATGTATGTATGTATGTACA----------------------------------------------------TACA---------TATGTA---------------------------------------------------TGTACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TCTCA-------------------------------CAGTGCA-----------------------TAGCTGCA-----------------------------------------------------C---AAAATACTGCCATATTCGCC----------TACA----------CA-----------------------------------C---------ACACA---CACACACACACA----------CAC--------ACACACACA-----------------------------------------CACA--CA-------------CA------CACACACACAC--A-----------------------------------------------------------------------------------------CACACACACACACACACACACACACACACACACACACACACA--------------------CACATGAATCTATTAATTTGT----------TATG------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTG--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ATGTA--------------------------------------------------------------------------------------------------------------------------T----------------------------------------------ATG------------------------------------------TATA-------TGTATATGTATA----------TGT--------ATATGTATA-----------------------------------------TGTA--TATGTAT-------ATG------TATATGTA-------------------------------------------------------------------------------------------------TATGTATATGTATATGTATATGTATA----------------------------------------------------TGTA---------TATGTA---------------------------------------------------TATGTATAGCG-------------------------------------------------------------------------------------------------------ATTAAACGT-----------------------------------ATTGTTGTCAGGGCGATTACTGATACTACCACTCG-----------ATCAGAGCG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TA----------------------------------------------------------------------CA-----------------------------------------------------T----------------------------------------------ATG--------TAC----------------------------------A-------TACATACATACGTACATACATACAT--------ACATACATA-------CA-----------------------------------------------------TA------CATATATTCAT--A----------------CATTCATTCATACATACA------------------T--------------ACAT-------------ACATACATACATA--------------------CATA--------------------------------------------------CA---------TACA--TACATACATA------------------------------CAAAATGTAAATATTTAT------------------------------------------------------------------GGTAAA-------------------TTG-TAGAGTTTTCGGATTGAATTACCAGGCGA-----------TCATAATCAGCAGCAGGTTG-------------------------------------------CTACCGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTACCAGGCGA-----------T......................................................................	19	20	0.35	7	0	0	0	0	0	7	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGATTGAATTACCAGGCGA-----------.......................................................................	23	20	0.35	7	0	0	0	0	0	0	7
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TAGAGTTTTCGGATTGA..............................................................................................	20	15	0.20	3	0	0	0	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTACCAGGCGA-----------TCA....................................................................	21	20	0.20	4	4	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TAGAGTTTTCGGATTGAAT............................................................................................	22	15	0.13	2	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TAGAGTTTTCGGATTGAATT...........................................................................................	22	15	0.13	2	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------------TTG-TAGAGTTTTCGGATTGA..............................................................................................	23	15	0.07	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------TTG-TAGAGTTTTCGGATTG...............................................................................................	21	15	0.07	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------TTG-TAGAGTTTTCGGATTGA..............................................................................................	22	15	0.07	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TAGAGTTTTCGGATTGAAT............................................................................................	21	15	0.07	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGAATTACCAGGCGA-----------TC.....................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGATTGAATTACCAGGCGA-----------TC.....................................................................	23	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACATACGTACATACATACAT--------ACATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCAGCAGGTTG-------------------------------------------CTA.....	20	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGATTGAATTACCAGGC....................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTACCAGGCGA-----------TCATT..................................................................	22	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTACCAGGCGA-----------.......................................................................	18	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGAATTACCAGGCGA-----------TCA....................................................................	23	20	0.05	1	1	0	0	0	0	0	0

dmo_780

scaffold_6473:13990009-13990159 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads