ID:

dmo_776

 Coordinate:

scaffold_6473:13627725-13628003 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI15893-cds]; exon [dmoj_GLEANR_16596:21]; CDS [Dmoj\GI15893-cds]; exon [dmoj_GLEANR_16596:22]; intron [Dmoj\GI15893-in]

Repeatable elements

NameClassFamilyStrand
(CCA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGATGCCAGCGATGAGCTGGACTGTGAGCCCATCACTAATGAAATCGATAGTAAGTGCTCAGCGACCCGTGTACTATCCCGAACAACAACGGTGTCAGCACAAACAACCCCAACACCACCACCACCACCACCAACAATCACAACTATATTAATATTAGCTTAACCAATCAACCAGAGTACTAAACGGTTTAGGAAACAGTGCGGGTCTACTATAGCTATACGCTGTCGATTCTCCATTTAATAATTTTCTCTATAAATACGACTAATATTATAATTCGTCTGCAGTAGATCATAGACTAATGCGCCAAGTATACTTTTTATTTTCACAGCATCCGATACCTCTCCTGCTGGTCGCAGCCAGTTGAACCTGAAGACCTAC
**************************************************....(((((..(((((((((..(((.(((.((((......(((((.................)))))..........................(((.........)))............................)))).)))...))))))))))....(((((.....)))))..................................(((.(((......))).))).(((.(((........))).)))))..))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
...............................................................................................................................................................................AGTACTAATCGGTCGAGGA......................................................................................................................................................................................... 19 3 8 13.75 110 56 53 0 1
................................................................................................................................................................................GTACTAATCGGTCGAGGA......................................................................................................................................................................................... 18 3 20 1.75 35 0 35 0 0
...................................................................................................................................................................................................................................................................................................................................................................AGCCAGTTGAACCTGAAGACCT.. 22 0 1 1.00 1 0 0 0 1
................................................................................................................................................................................GGACTAAACGGTTTAGGAAACAGT................................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0
.............................CCATCACTAATGAAATCGATAGTAAGTGC................................................................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0
.....................................................................................ATAACGGCTTCAGCACAAA................................................................................................................................................................................................................................................................................... 19 3 20 0.60 12 12 0 0 0
....................................................................................................................................AACATTCCCAATTATATTAAT.................................................................................................................................................................................................................................. 21 3 20 0.50 10 10 0 0 0
.........................................................................................................................................TCACAACTCTCTTAATATTA.............................................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0
....................................................................................................................................AACATTCCCAATTATATTAATA................................................................................................................................................................................................................................. 22 3 6 0.33 2 2 0 0 0
..............................................................................................................................................................................CAGTACTAATCGGTTGAGGA......................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0
................................................................................................................................................................................GTACTAATCGGTCTAGGAC........................................................................................................................................................................................ 19 3 3 0.33 1 0 1 0 0
................................................................................................................................................................................GTACTAATCGGTTGAGGAC........................................................................................................................................................................................ 19 3 6 0.17 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................................AGGAGCCAGTTGAAACTGAAG...... 21 3 7 0.14 1 0 0 0 1
....................................................................................................................................................................................................................................................................................................................................................................GCCCGATGAACCTGAAGCCC... 20 3 8 0.13 1 0 0 1 0
................................................................................................................................................................................GTTTTAAACGGTTTAGGGA........................................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0
...............................................................................................................................................................................AATACTAATCGGTCTAGGA......................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0
........................................GAAATCGATGGTAACTGAT................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCTACGGTCGCTACTCGACCTGACACTCGGGTAGTGATTACTTTAGCTATCATTCACGAGTCGCTGGGCACATGATAGGGCTTGTTGTTGCCACAGTCGTGTTTGTTGGGGTTGTGGTGGTGGTGGTGGTGGTTGTTAGTGTTGATATAATTATAATCGAATTGGTTAGTTGGTCTCATGATTTGCCAAATCCTTTGTCACGCCCAGATGATATCGATATGCGACAGCTAAGAGGTAAATTATTAAAAGAGATATTTATGCTGATTATAATATTAAGCAGACGTCATCTAGTATCTGATTACGCGGTTCATATGAAAAATAAAAGTGTCGTAGGCTATGGAGAGGACGACCAGCGTCGGTCAACTTGGACTTCTGGATG
**************************************************....(((((..(((((((((..(((.(((.((((......(((((.................)))))..........................(((.........)))............................)))).)))...))))))))))....(((((.....)))))..................................(((.(((......))).))).(((.(((........))).)))))..))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V056
head
 M046
female body
 M060
embryo
 V049
head
..............................................................................................................................................................GAATTGGTGAGTCGGTATCA......................................................................................................................................................................................................... 20 3 7 0.71 5 4 0 1 0 0
..................................................................................................GCGTTTGTTGGGGTAGTG....................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0
.........................................................................................................TTGGGGTTGTGGTGTTGGGG.............................................................................................................................................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0
..................................................................................TATTGTTGCCGAAGTCGTGTTT................................................................................................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 1
.....................................................................................TATTGCCGAAGTCGTGTTT................................................................................................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 4 0 0
................................................................................................................TGTGGTGGTGGTGGTGGTGGTGGTTA................................................................................................................................................................................................................................................. 26 1 7 0.14 1 0 0 0 1 0
...............................................................................................................TTGTGGTGGTGGAGGTGGTGGTGGTTA................................................................................................................................................................................................................................................. 27 2 9 0.11 1 0 0 0 1 0
...........................................................................................................GGGGTTGTGGTGGTGC................................................................................................................................................................................................................................................................ 16 1 9 0.11 1 0 1 0 0 0
..................................................................TGCATATGATAGGGCTCGT...................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0
.................................................................................................CGTGTTAGTTGGGGCTG......................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TGGCGTAGGCTATGGTGAT................................... 19 3 14 0.07 1 1 0 0 0 0
......................................................................................................................GGCGGTGGTCGTGGGTGTTAG................................................................................................................................................................................................................................................ 21 3 17 0.06 1 1 0 0 0 0
...........................................................................................................CGGGTGGTGGTGGTGGTGGTGGTGGTT..................................................................................................................................................................................................................................................... 27 2 19 0.05 1 1 0 0 0 0
................................................................................................TCGTGGGTGTTGGGGTT.......................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0
......................................................................................................................GGTAGTGGTGGTGGGTGTT.................................................................................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0
..................................................................................................GCGTTTGTTGGGGTAGTGA...................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:13627675-13628053 + dmo_776 CGATGCCAGCGATGAGCTGGACTGT---GAGCC---CATCACTAATGAAATCGATAGTAAGTGCTC-AGCGA--------------CCCG-------------------------TGTACTATCCCGA-----------ACAACAACGGTGTCAGCACAA-----------ACAA--------------------------------------------------------------------------------------------------------------------CCCCAACACCACCACCA------------------CCACCACCAACAATCACAACTATATTAATATTAGCTTAACCAATCAACCA--GAGTACTAAACGGTTTAGGAAACAGTGCGGGTCTACTATAGCTATACGCTGTCGATTCTC----CATTTAAT---------------------------------------------------------------------------------AATTTT------------------------------CTCTA-----------------TAAATACGACTAATATTATAAT------------TCG-TCTGCAGTAGATCAT------AGA-CTAATGCGC--------------CAAGTATAC----TTTT-T---ATTT-TCACAGCATCCGATA-------------CC-TCTCCTG------CTGGTCG---CAGCCAGTTGAACCTGAAGACCTAC
droVir3 scaffold_12928:1381484-1381858 - CGATGCCAGCGATGAGCTGGACTGT---GAGCC---CATCACTAATGAGATCGATAGTAAGTGGTC-ATCGA--------------CCCG----------------------------TCAACCGAACC--------CAAACAAAACGGTGTCAGCAAAA-----------AAAAAAAAAAACCCCACC--------------------------------------------------------------------------------------------------------------------CAA------------------CTATAATTCACAATCTCAA--------------GC-TAACCAATCGATCAAAGCGTACTAAACGAACAAGGGCGC--CGCAGTGCTATTAAAACTATAATAT--AATATATA----TTTTCTAT---------------------------------------------------------------------------T-----------------------------------CTTT-CGATAATACCCATAATACTGAGC-----------------------TTTAAC-TAT-----GC----TTT---TGTTGTCCAATATTTAACACTG----TGCTGACATGCGGCTCTTCCAT-----TTCT-TTCT-TGACAGTTTCCGACC-------------CG-TCGCCAG------CCGGACG---CAATCAGCTGAACCTGAAGACCTAT
droGri2 scaffold_15203:8350483-8350831 + CGATGCCAGCGATGAGCTCGATTGC---GCGCC---CATCACTAACGAGATCGATAGTAAGTGG----TTAT--------------CGAAC------------------------CGAAAACCCCACACTCCCT---CCAGCAAAACGGTGTCAGCACAA-----------A----------CCCCACCAGCAACAACAACCAT------------CGTAACTTTACCAATCAAGT-------------AACC--TA--------AGTAGCTACTAAAAGG--C--T---AG-----------ATC------AGGCGTCAGGGTTATT-------------------------------------------------------------------------G-CT--CATA-------------------TATATT------GTATATAATGA-T---CTATAATAGTAAATGTGCGACAATGTACAAATGTACACATT--------------------------------------------------------------------------------------------------------------------------------AT----CTA-ATGCT------CGA-------------------------ATATATTG----TTCT-C---TTTT-TCACAGCATCCGATC-------------CG-CCGCAGT------CTGGACG---CAGCCAGCTGAACCTGAAGACCTAT
droWil2 scf2_1100000004909:12094335-12094633 - CGATGCCAGCGATGAGCTGGATTGCCCCGGACTAACGCTCAGCAATGAGATCGATCGTAAGTGGA--AGCGTAGCG----AGA-------A------------------------TGA---CCCGAATTCCCC-----------------------------------------------------------------------------------------------------------------------CCGGA-TCCAGTCTTCCACTACTAACTCT---------AT-----------ATCTATCCACAGGGCTATGGCTACC-------------------------------------------------------------------------A-CACCCATC-------------------------------ATATTTAACATT---------------------------------------------------------TA----------------------------------ACTAATCTGCAAATCTCA-TGAAAATACAC-------------------------------------------AAACT--TC----TTT---TCTAATT--TGT-TTATTTTTC--------------CG--------GCTTTAT-T---GTTT-TCACAGCCAACGAAC-------------CA-GCGAATA------CTCCACG---CAATCAATTGTTGCTAAAGACCTAT
dp5 XL_group3a:2061837-2062191 - CGACAGCAGCGATGAGGCGGACTGT---GGTCT---GATCAGCAACGAGATCGAGCGTAAGTCGCC-AGCGACCCG----AAAAGAACCAA-------------------AGAACCGTACCACTGAAACGCC------------------------------CCGAAGGAC---------------------ATC---AACTGT------------CGT------CT----CACAC-------------CTCCA-AA--------CGTAGATACTAACTGA--G--AAAAGC-------------T------AAAGGCTATGGCTATC-------------------------------------------------------------------------G-----CATC-------------------TAA---TC----ATACTTATGAA-TCTTCTAC-CTATCATCTGTGTGATCATTGATCCTCGCTAACATCAACTAAAACTTGTGTCCAAATATCA--------------------------------------------------------------------------------------------------------T----TCT-CTCAA------AGAACTAACAT-------------------T----TGAATCTCT-T---GAAT-CCGCAGCCAACG-------------AGC----------CAGGCCGCACCAC---CAGTCAATTGAATCTCAAGACCTAT
droPer2 scaffold_11:2614133-2614201 + CGACAGCAGCGATGAGGCGGACTGT---GGTCT---GATCAGCAACGAGATCGAGCGTAAGTCGCC-AGCGA--------------CCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12929:2296372-2296710 - CGATAGCAGTGACGAAACAGACTGC---GGTCAGTCGGTCAGCAACGAAATCGATCGTAAGTGGCCCAGAG------------AGACCCAA------------------------CGAGCCACCAA------------------------------------TCAA----AAGAACA---------------AAA---AATAACCGTCTACCACACCGT------TT----GGCTTTTCTTCCCCAACCCCCCAGAA--------AGTAGTTACTAACTAACAG--AGAGAC-------------T------AAGGGCTATGGCTGAC-------------------------------------------------------------------------AAAACACATC-------------------T--CTTAC----AAGTC----------------------------------------------------------------------GATATCACC-----------CTATT----------------------------------------AATATAT---------------------------TC-TATAT---CT----TTT-TTAAA------AGA-TTAGTAATA------------------TTTAATAA-TTAT----TCCTC-CATCAGCTGCTGATCCCG-------GTA----------CCGGACGTGGATC---CAATAAATTGAACCTGAAGACCTAT
droBip1 scf7180000396434:290316-290658 - CGACAGCAGCGATGAGACCGACTGC---GGTCAGTCAGTTAGCAACGAAATCGATCGTAAGTGGCCCAGCGA--------------CCCAA------------------------CG-----------TGCCA-CAA-----------------------AACCAAAAAAAAGAACA---------------AAA---CATAACCGTCTACCACACCGT------TT----GGCTTTTCTTCC-----CCCCCA-GA--------AGTAGTTACTAACTAACCGAGAGAAAC-------------T------AAGGGCTATGGCTGAC-------------------------------------------------------------------------C-AACACATC-------------------TCTTTA------A-------GTTT---------------------------------------------------------TAGT-TGAAATCACC-----------TTATT----------------------------------------AATAAAT---------------------------CA-TATATT--AG----TTT-TTACA------AGA-TTACTAATA--------------TACT----TGAA-TTAT----TCCAT-CATCAGCTGCTGAACCCA-------GTC----------CGGGACGCGGATC---CAACAAACTGAACCTGAAGACCTAT
droKik1 scf7180000302258:526083-526462 - CGACAGCAGCGATGAGGTGGACTGC---GGTCC---CATAAGCAACGAGATTGATCGTAAGTGGAG-AGCAACGCACCCGAGA---ACCCG--ACAACTTGAGATCCCTGAGAACCTT--------------CT---CCACCGAAG--------------CACCGAAGGAG------AAA--GCCC------CCC---AATAAC------------TCT------TT----CTCTCTCTCTCC-----CCTCCA-AA--A----ATGTAGCTACTAACTGC--G------ACC------------C------CGGGGCTATGGCTACC-------------------------------------------------------------------------A-C-CACACA-------------------CACAAG------A----------------------------------------------------------------GTCGTATCTAGAAATCACT-----------------------------------CTCA-TAACACTAGC------AATAAGT-----------------------TCAAGA-TAC-----AG----TAT-CTGAG------AGA--TACTAATGACCAT----------GTTGGTT---G-TTAT----TTCCT-CCACAGCCTCCGATCACAACCAAGGAA--------------CTCGCGGATCATCAACCGTGCTGAATCTCAAGACCTAT
droFic1 scf7180000453927:187166-187230 - TGACAGCAGCGATGAGGCGGACTGT---AATCA---GATCAGCAACGAGATCGATCGTAAGTGG----GCAA--------------CCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491011:702858-703192 - TGATGAAAGCGATGAGGTGGATTGT---AGTCA---TGTCAGCAATGAGATTGATAGTAAGTGG----GCGA--------------TCTAC------------------------CAAGAGACCGAGATGCC--CAT-----------------------AACCAATGATA---------------------TTA---AATAAC------------TGT------CT----GACTT-------------TCCCT-AA--------AGAACCTACTAACAGC--G------AT-------------T------GAGGGCTAGGGCTAAC-------------------------------------------------------------------------A-CA--CATC-------------------CACACATC----TATCTTAT---------------------------------------------------------------------------TCTTCTAATATC---CTGATTCA------------CT---------------------------TT------------ACCATATCCTATAGA-TAGCCCTTAC----TTT-ACCCA-A----AGA-CTAACTCTG--------------AATTTCTTTCAA-----TTCCTCG-A-AAACAACAGACAACTTTA-------ATAACC-------CTGGACGTGGATC---GAACCAATTGAATCTCAAGACCTAC
droRho1 scf7180000779506:493348-493639 - TGATGATAGCGATGAGGCGGATTGC---GGTCA---TATCAGCAATGAGATTGATCGTAAGTGG----GCGA--------------CCCAC---------------------------------------CCA-CAG-----------------------AACCAAAGATA---------------------ATA---AATAAC------------TGT------CT----GATTT-------------CCCCT-GAATT----ATGCCACTACTAACTGC--G------AT-------------T------GAGGGTTTAGGCTG---------------------------------------------------------------------------------CACC-------------------TCTCTA-------------------------------------------------------------------------------------------------TTCC---TTGTTTCA------------CC----------------------------A------------ACCATGCTCCATAGA-AGACCATTAC----TTT-TCGCC------AGA-CTTAC-------------------ACTTCCCTTAA-----TTCTTCC-A-AAACAGCTCACGACACCA-------ACA----------CTGGACGCGGATC---TCCCCAATTGAACCTCAAGACCTAT
droBia1 scf7180000301760:4779654-4779738 + CGACAGTAGCGATGAGGCCGATTGT---GGCCA---AATCAGCAATGATATTGATCGTAAGTGG----GCGA--------------CCCAC------------------------CGAACCACCGAGCTGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415151:421114-421432 + TGATAGTAGCGATGAGGCGGATTGT---GGCCA---AATCAGCAATGACATTGATCGTAAGTGG----GTCA--------------CCCAC------------------------CGAACCAGCGAGATGCCA----------------------------ACCAAAGA-----------------------ACC---AATAAC------------TGT------CT----GATCT-------------CCCCAAAA--------AGTAGCTACTAACTGC--G------AT-------------T------AAGGGCTAAGGCTACC-------------------------------------------------------------------------A-CA--CATC-------------------TATTTATCTATCCACCTTTT---------------------------------------------------------------------------------TATCCA---CTGACTCA------------CCC--------------------------------------------------AAAGAATACCTCATGT----TTT-GTGCC------AGA-CTAACTCTA--------------AATTTCTTTTAA-----TCCTCCCCA-AAACAGCCAATGAACCTA-------ACAACT-------CCGGACGTGGAAC---GAACCAATTGAAACTCAAGACCTAT
droEug1 scf7180000409277:71373-71429 - TGATAGTAGCGATGAGGCGGATTGT---GGCCA---CATCAGCAACGATATTGATCGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:2386404-2386737 - TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATTAGCAACGATATCGATCGTAAGTGG----ATGG--------------CTCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CT----GACTT-------------ATCCC-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCCCTCTTGATCCA------------CA----CATCCA-----------------TA------------ACCATAATCGAGTGA-TAAACCG-AC----TTAAATACC------AGA-CTAATTCTG--------------AGTTTGCATTAT-----TCCTTTCAAAAAACAGCCGCCGAT---A-------GTA----------ATGATCGCAGACC---GAACCAACTGAATCTCAAGACCTAT
droSim2 x:2200556-2200891 - dsi_12664 TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGATATCGATCGTAAGTGG----GTCA--------------CCCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CC----GACTT-------------ACCCT-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACCTAT---------------------------------------------------------------------------------TATCCC---CTGATCCA------------CCCTGCCATCCA-----------------TA------------ACCATAACCGAGTGA-TAAGCCG-AC----CTT-ATACG------AGA-CTAATTCTG--------------AGTTTCCATCAA-----TCCTTTTAA-AAACAGCCGCCGACAACA-------GCA----------ATGATCGCAAATC---AAACCAACTGAATCTCAAGACCTAT
droSec2 scaffold_10:2162166-2162501 - TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGATATCGATCGTAAGTGG----GTCA--------------CCCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CT----GACTT-------------ACCCT-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCC---CTGATCCA------------CCCTGCCATCCA-----------------TA------------ACCATAACCGAGTGA-TAAGCCG-AC----TTT-ATACG------AGA-CTAATTCTG--------------AGTTTCCATCAA-----TCCTCTTAA-AAACAGCCGCCGACAACA-------GCA----------ATGATCGCAAATC---AAACCAACTGAATCTCAAGACCTAT
droYak3 X:5959294-5959626 + TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGACATCGATCGTAAGTGG----GCGA--------------CCCAC------------------------TGAACCACCGAGCTGCCA-CAG-----------------------AACCAAAGTTT---------------------ACA---ATTAAC------------TGT------CT----GGCTT-------------CCCCC-AA--------TGTAGCTACTAACTGC--G------AT-------------C------AAGGGCTTAGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TATCTATC----AAACTACT---------------------------------------------------------------------------------TATCCC---CTGAC-CA------------CCCCA-TAACCA-----------------TA------------CCCATAACCCATTGA-TAAACCT-TC----TTT-ATACC------AGA-CTAATTCTG--------------ATTTACTTTCGA-----TCCTTTT-C-AAACAGCCGCTGACAACA-------GTA----------ACGATCGCCGATC---GAACCAACTGAATCTCAAGACCTAT
droEre2 scaffold_4644:2335937-2336015 - TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATTAGCAACGATATTGATCGTAAGTGG----GTGA--------------CCCACTG-----------------------ACCCCACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGATGCCAGCGATGAGCTGGACTGT---GAGCC---CATCACTAATGAAATCGATAGTAAGTGCTC-AGCGA--------------CCCG-------------------------TGTACTATCCCGA-----------ACAACAACGGTGTCAGCACAA-----------ACAA--------------------------------------------------------------------------------------------------------------------CCCCAACACCACCACCA------------------CCACCACCAACAATCACAACTATATTAATATTAGCTTAACCAATCAACCA--GAGTACTAAACGGTTTAGGAAACAGTGCGGGTCTACTATAGCTATACGCTGTCGATTCTC----CATTTAAT---------------------------------------------------------------------------------AATTTT------------------------------CTCTA-----------------TAAATACGACTAATATTATAAT------------TCG-TCTGCAGTAGATCAT------AGA-CTAATGCGC--------------CAAGTATAC----TTTT-T---ATTT-TCACAGCATCCGATA-------------CC-TCTCCTG------CTGGTCG---CAGCCAGTTGAACCTGAAGACCTACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTTGAACCTGAAGACCT..2211.001000100
................................C---CATCACTAATGAAATCGATAGTAAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
droVir3
CGATGCCAGCGATGAGCTGGACTGT---GAGCC---CATCACTAATGAGATCGATAGTAAGTGGTC-ATCGA--------------CCCG----------------------------TCAACCGAACC--------CAAACAAAACGGTGTCAGCAAAA-----------AAAAAAAAAAACCCCACC--------------------------------------------------------------------------------------------------------------------CAA------------------CTATAATTCACAATCTCAA--------------GC-TAACCAATCGATCAAAGCGTACTAAACGAACAAGGGCGC--CGCAGTGCTATTAAAACTATAATAT--AATATATA----TTTTCTAT---------------------------------------------------------------------------T-----------------------------------CTTT-CGATAATACCCATAATACTGAGC-----------------------TTTAAC-TAT-----GC----TTT---TGTTGTCCAATATTTAACACTG----TGCTGACATGCGGCTCTTCCAT-----TTCT-TTCT-TGACAGTTTCCGACC-------------CG-TCGCCAG------CCGGACG---CAATCAGCTGAACCTGAAGACCTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACG---CAATCAGCTGAACCT..........2011.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACC-------------CG-TCGCCAG------C..................................2011.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACC-------------CG-TCGCCAG------CCGGAC.............................2511.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-TCGCCAG------CCGGACG---C........................1711.001000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAG------CCGGACG---CAATCAGCT................2211.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CCGGACG---CAATCAGCTGAACCT..........2511.001100000000000000000000000000000000000000000000000000000000000000
droGri2
CGATGCCAGCGATGAGCTCGATTGC---GCGCC---CATCACTAACGAGATCGATAGTAAGTGG----TTAT--------------CGAAC------------------------CGAAAACCCCACACTCCCT---CCAGCAAAACGGTGTCAGCACAA-----------A----------CCCCACCAGCAACAACAACCAT------------CGTAACTTTACCAATCAAGT-------------AACC--TA--------AGTAGCTACTAAAAGG--C--T---AG-----------ATC------AGGCGTCAGGGTTATT-------------------------------------------------------------------------G-CT--CATA-------------------TATATT------GTATATAATGA-T---CTATAATAGTAAATGTGCGACAATGTACAAATGTACACATT--------------------------------------------------------------------------------------------------------------------------------AT----CTA-ATGCT------CGA-------------------------ATATATTG----TTCT-C---TTTT-TCACAGCATCCGATC-------------CG-CCGCAGT------CTGGACG---CAGCCAGCTGAACCTGAAGACCTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACG---CAGCCAGCTGAAC............2011.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATC-------------CG-CCGCAGT------CTGGACG---CA.......................2511.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACG---CAGCCAGCTGAACCT..........1911.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCCAGCTGAACCTGAAGA.....2111.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGT------CTGGACG---CAGCCAGC.................1911.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------CG-CCGCAGT------CTGGACG---CAGCC....................2211.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CCGCAGT------CTGGACG---CAGCC....................2011.00110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAACCTGAAGACCTA.1911.00101
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGAACCTGAAGA.....1811.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGAACCTGAAGACC...2011.00110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT------CTGGACG---CAGCCAGCT................1911.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGCTGAACCTGAAGACC...2211.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------CG-CCGCAGT------CTGGACG---CAGCCAGCT................2711.00110
droWil2
CGATGCCAGCGATGAGCTGGATTGCCCCGGACTAACGCTCAGCAATGAGATCGATCGTAAGTGGA--AGCGTAGCG----AGA-------A------------------------TGA---CCCGAATTCCCC-----------------------------------------------------------------------------------------------------------------------CCGGA-TCCAGTCTTCCACTACTAACTCT---------AT-----------ATCTATCCACAGGGCTATGGCTACC-------------------------------------------------------------------------A-CACCCATC-------------------------------ATATTTAACATT---------------------------------------------------------TA----------------------------------ACTAATCTGCAAATCTCA-TGAAAATACAC-------------------------------------------AAACT--TC----TTT---TCTAATT--TGT-TTATTTTTC--------------CG--------GCTTTAT-T---GTTT-TCACAGCCAACGAAC-------------CA-GCGAATA------CTCCACG---CAATCAATTGTTGCTAAAGACCTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------CA-GCGAATA------CTCCACG---C........................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAATTGTTGCTAAAGACCTAT2411.00100010
.................................................ATCGATCGTAAGTGGA--AGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--------------CG--------GCTTTAT-T---GTTT-TCACA..........................................................................2211.00100010
.......................GCCCCGGACTAACGCTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGTTGCTAAAGAC....1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGTTGCTAAAGA.....1811.00100010
......................................................................GTAGCG----AGA-------A------------------------TGA---CCCGAATTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
dp5
CGACAGCAGCGATGAGGCGGACTGT---GGTCT---GATCAGCAACGAGATCGAGCGTAAGTCGCC-AGCGACCCG----AAAAGAACCAA-------------------AGAACCGTACCACTGAAACGCC------------------------------CCGAAGGAC---------------------ATC---AACTGT------------CGT------CT----CACAC-------------CTCCA-AA--------CGTAGATACTAACTGA--G--AAAAGC-------------T------AAAGGCTATGGCTATC-------------------------------------------------------------------------G-----CATC-------------------TAA---TC----ATACTTATGAA-TCTTCTAC-CTATCATCTGTGTGATCATTGATCCTCGCTAACATCAACTAAAACTTGTGTCCAAATATCA--------------------------------------------------------------------------------------------------------T----TCT-CTCAA------AGAACTAACAT-------------------T----TGAATCTCT-T---GAAT-CCGCAGCCAACG-------------AGC----------CAGGCCGCACCAC---CAGTCAATTGAATCTCAAGACCTATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....AGCAGCGATGAGGCGGACTGT---GGTCT---G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000002
...CAGCAGCGATGAGGCGGACTGT---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
..........GATGAGGCGGACTGT---GGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
droPer2
CGACAGCAGCGATGAGGCGGACTGT---GGTCT---GATCAGCAACGAGATCGAGCGTAAGTCGCC-AGCGA--------------CCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....AGCAGCGATGAGGCGGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droAna3
CGATAGCAGTGACGAAACAGACTGC---GGTCAGTCGGTCAGCAACGAAATCGATCGTAAGTGGCCCAGAG------------AGACCCAA------------------------CGAGCCACCAA------------------------------------TCAA----AAGAACA---------------AAA---AATAACCGTCTACCACACCGT------TT----GGCTTTTCTTCCCCAACCCCCCAGAA--------AGTAGTTACTAACTAACAG--AGAGAC-------------T------AAGGGCTATGGCTGAC-------------------------------------------------------------------------AAAACACATC-------------------T--CTTAC----AAGTC----------------------------------------------------------------------GATATCACC-----------CTATT----------------------------------------AATATAT---------------------------TC-TATAT---CT----TTT-TTAAA------AGA-TTAGTAATA------------------TTTAATAA-TTAT----TCCTC-CATCAGCTGCTGATCCCG-------GTA----------CCGGACGTGGATC---CAATAAATTGAACCTGAAGACCTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCG-------GTA----------CCGGACGTGGA..............................2112.002020000
..............................................................................................................................................................................ACA---------------AAA---AATAACCGTCTACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATC---CAATAAATTGAAC............2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGGATC---CAATAAATT................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCCCG-------GTA----------CCGGACGTG................................2211.001010000
droBip1
CGACAGCAGCGATGAGACCGACTGC---GGTCAGTCAGTTAGCAACGAAATCGATCGTAAGTGGCCCAGCGA--------------CCCAA------------------------CG-----------TGCCA-CAA-----------------------AACCAAAAAAAAGAACA---------------AAA---CATAACCGTCTACCACACCGT------TT----GGCTTTTCTTCC-----CCCCCA-GA--------AGTAGTTACTAACTAACCGAGAGAAAC-------------T------AAGGGCTATGGCTGAC-------------------------------------------------------------------------C-AACACATC-------------------TCTTTA------A-------GTTT---------------------------------------------------------TAGT-TGAAATCACC-----------TTATT----------------------------------------AATAAAT---------------------------CA-TATATT--AG----TTT-TTACA------AGA-TTACTAATA--------------TACT----TGAA-TTAT----TCCAT-CATCAGCTGCTGAACCCA-------GTC----------CGGGACGCGGATC---CAACAAACTGAACCTGAAGACCTATSizeHit CountTotal NormTotal
No Reads
droKik1
CGACAGCAGCGATGAGGTGGACTGC---GGTCC---CATAAGCAACGAGATTGATCGTAAGTGGAG-AGCAACGCACCCGAGA---ACCCG--ACAACTTGAGATCCCTGAGAACCTT--------------CT---CCACCGAAG--------------CACCGAAGGAG------AAA--GCCC------CCC---AATAAC------------TCT------TT----CTCTCTCTCTCC-----CCTCCA-AA--A----ATGTAGCTACTAACTGC--G------ACC------------C------CGGGGCTATGGCTACC-------------------------------------------------------------------------A-C-CACACA-------------------CACAAG------A----------------------------------------------------------------GTCGTATCTAGAAATCACT-----------------------------------CTCA-TAACACTAGC------AATAAGT-----------------------TCAAGA-TAC-----AG----TAT-CTGAG------AGA--TACTAATGACCAT----------GTTGGTT---G-TTAT----TTCCT-CCACAGCCTCCGATCACAACCAAGGAA--------------CTCGCGGATCATCAACCGTGCTGAATCTCAAGACCTATSizeHit CountTotal NormTotal
No Reads
droFic1
TGACAGCAGCGATGAGGCGGACTGT---AATCA---GATCAGCAACGAGATCGATCGTAAGTGG----GCAA--------------CCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGATGAAAGCGATGAGGTGGATTGT---AGTCA---TGTCAGCAATGAGATTGATAGTAAGTGG----GCGA--------------TCTAC------------------------CAAGAGACCGAGATGCC--CAT-----------------------AACCAATGATA---------------------TTA---AATAAC------------TGT------CT----GACTT-------------TCCCT-AA--------AGAACCTACTAACAGC--G------AT-------------T------GAGGGCTAGGGCTAAC-------------------------------------------------------------------------A-CA--CATC-------------------CACACATC----TATCTTAT---------------------------------------------------------------------------TCTTCTAATATC---CTGATTCA------------CT---------------------------TT------------ACCATATCCTATAGA-TAGCCCTTAC----TTT-ACCCA-A----AGA-CTAACTCTG--------------AATTTCTTTCAA-----TTCCTCG-A-AAACAACAGACAACTTTA-------ATAACC-------CTGGACGTGGATC---GAACCAATTGAATCTCAAGACCTACSizeHit CountTotal NormTotal
No Reads
droRho1
TGATGATAGCGATGAGGCGGATTGC---GGTCA---TATCAGCAATGAGATTGATCGTAAGTGG----GCGA--------------CCCAC---------------------------------------CCA-CAG-----------------------AACCAAAGATA---------------------ATA---AATAAC------------TGT------CT----GATTT-------------CCCCT-GAATT----ATGCCACTACTAACTGC--G------AT-------------T------GAGGGTTTAGGCTG---------------------------------------------------------------------------------CACC-------------------TCTCTA-------------------------------------------------------------------------------------------------TTCC---TTGTTTCA------------CC----------------------------A------------ACCATGCTCCATAGA-AGACCATTAC----TTT-TCGCC------AGA-CTTAC-------------------ACTTCCCTTAA-----TTCTTCC-A-AAACAGCTCACGACACCA-------ACA----------CTGGACGCGGATC---TCCCCAATTGAACCTCAAGACCTATSizeHit CountTotal NormTotal
No Reads
droBia1
CGACAGTAGCGATGAGGCCGATTGT---GGCCA---AATCAGCAATGATATTGATCGTAAGTGG----GCGA--------------CCCAC------------------------CGAACCACCGAGCTGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGATAGTAGCGATGAGGCGGATTGT---GGCCA---AATCAGCAATGACATTGATCGTAAGTGG----GTCA--------------CCCAC------------------------CGAACCAGCGAGATGCCA----------------------------ACCAAAGA-----------------------ACC---AATAAC------------TGT------CT----GATCT-------------CCCCAAAA--------AGTAGCTACTAACTGC--G------AT-------------T------AAGGGCTAAGGCTACC-------------------------------------------------------------------------A-CA--CATC-------------------TATTTATCTATCCACCTTTT---------------------------------------------------------------------------------TATCCA---CTGACTCA------------CCC--------------------------------------------------AAAGAATACCTCATGT----TTT-GTGCC------AGA-CTAACTCTA--------------AATTTCTTTTAA-----TCCTCCCCA-AAACAGCCAATGAACCTA-------ACAACT-------CCGGACGTGGAAC---GAACCAATTGAAACTCAAGACCTATSizeHit CountTotal NormTotal
No Reads
droEug1
TGATAGTAGCGATGAGGCGGATTGT---GGCCA---CATCAGCAACGATATTGATCGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATTAGCAACGATATCGATCGTAAGTGG----ATGG--------------CTCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CT----GACTT-------------ATCCC-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCCCTCTTGATCCA------------CA----CATCCA-----------------TA------------ACCATAATCGAGTGA-TAAACCG-AC----TTAAATACC------AGA-CTAATTCTG--------------AGTTTGCATTAT-----TCCTTTCAAAAAACAGCCGCCGAT---A-------GTA----------ATGATCGCAGACC---GAACCAACTGAATCTCAAGACCTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------ATGATCGCAGACC---GAACCAACT................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---A-------GTA----------ATGATCGCAGACC---GAACCAACT................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---A-------GTA----------ATGATCGCAGACC---GAACCAAC.................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC---GAACCAACTGAATCTCAAGACC...2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TAACTGC--T------AT-------------C------GAGGGCTTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GATATCGATCGTAAGTGG----ATGG--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---A-------GTA----------ATGATCGCAGACC---.........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------ATGATCGCAGACC---GAACCAACTGAA.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------ATGATCGCAGACC---GAACC....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACC------AGA-CTAATTCTG--------------AGTTTGC...................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------AGTTTGCATTAT-----TCCTT....................................................................................1912.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCAGACC---GAACCAACTGAA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCAGACC---GAACCA...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGA-CTAATTCTG--------------AGTTTGCATTAT-----T........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTCTTGATCCA------------CA----CATCC..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGAATCTCAAGAC....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCGATCGTAAGTGG----ATGG--------------CTCAC------------------------TGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCGATGAGGCGGATTGT---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCGATGAGGCGGATTGT---GGTCA---AATTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAAAAACAGCCGCC....................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAT---A-------GTA----------ATGATCGCAGACC---GAACC....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GTA----------ATGATCGCAGACC---GAACCAAC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---A-------GTA----------ATGATCGCAGACC---GAACCAAC.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TACTAACTGC--T------AT-------------C------GAGGGCTTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAT---A-------GTA----------ATGATCGCAGACC---GAA......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCAGACC---GAACCAACTGA..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------ATGATCGCAGACC---GAACCAACTGAAT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACGATATCGATCGTAAGTGG----ATGG--------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA-----------------TA------------ACCATAATCGAGTGA-TAAACCG-AC----....................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------ACCATAATCGAGTGA-TAAACCG-..........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAT---A-------GTA----------ATGATCGCAGACC---GAAC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GAACCAACTGAATCTCAAGAC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------ATGATCGCAGACC---GAAC.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC------AGA-CTAATTCTG--------------AGTTTGCATTAT-----TC.......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CT----GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------ATGATCGCAGACC---GAACCAACTGA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTAT........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAAAACAGCCGCCGAT---A-------GTA----------A........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACTAACTGC--T------AT-------------C------GAGGGCTTTGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GTA----------ATGATCGCAGACC---GAACCAACTGAA.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----------ATGATCGCAGACC---GAACC....................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCCCTCTT...............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGATGGTAGCGATGAGGCGGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGAATCTCAAGACCT..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCCCTCTTGA.............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-..........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCAGACC---GAACCAACTGAT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGATGAGGCGGATTGT---GGTCA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAAC...............................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAATCTCAAGACCT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................GATTGT---GGTCA---AATTAGCAACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGATGAGGCGGATTGT---GGTCA---AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA-----------------TA------------ACCATAATCGAGTGA-TAAACC............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACC---GAACCAACTGAATCTCAAGA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---A-------GTA----------ATGATCGCAGACC---GAACCAACATC..............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCA-----------------TA------------ACCATAATCGAGTGA-TAA...............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........GCGATGAGGCGGATTGT---GGTCA---AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---A-------GTA----------ATGATCGCAGACC---.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GTA----------ATGATCGCAGACC---GAAC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TAAC------------TGT------CT----GACTT-------------ATCCC-AA--------AGTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGATATCGATCGTAAGTGG----GTCA--------------CCCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CC----GACTT-------------ACCCT-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACCTAT---------------------------------------------------------------------------------TATCCC---CTGATCCA------------CCCTGCCATCCA-----------------TA------------ACCATAACCGAGTGA-TAAGCCG-AC----CTT-ATACG------AGA-CTAATTCTG--------------AGTTTCCATCAA-----TCCTTTTAA-AAACAGCCGCCGACAACA-------GCA----------ATGATCGCAAATC---AAACCAACTGAATCTCAAGACCTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAACTGAATCTCAAGAC....2012.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATC---AAACCAACTGAATCTCAAG......2411.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAACTGAATCTCAAGACCT..2311.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATC---AAACCAACTGAATCTCAAG......2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACA-------GCA----------ATGATCGCAAATC---AAACCA...................2911.00100000001000000000
......................................................................................................................................................................................................................................................................................TGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-C.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AAACCAACTGAATCTCAAGAC....2211.00110000000000000000
droSec2
TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGATATCGATCGTAAGTGG----GTCA--------------CCCAC------------------------TGCACCACCGAGATGCCA-CAG-----------------------AACCAAAGTTA---------------------ATA---ATTAAC------------TGT------CT----GACTT-------------ACCCT-AA--------AGTAGCTACTAACTGC--T------AT-------------C------GAGGGCTTTGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TGTCTATC----AAACTTAT---------------------------------------------------------------------------------TATCCC---CTGATCCA------------CCCTGCCATCCA-----------------TA------------ACCATAACCGAGTGA-TAAGCCG-AC----TTT-ATACG------AGA-CTAATTCTG--------------AGTTTCCATCAA-----TCCTCTTAA-AAACAGCCGCCGACAACA-------GCA----------ATGATCGCAAATC---AAACCAACTGAATCTCAAGACCTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATC---AAACCAACTGAATCTCAAGACC...2711.0010010
.....GTAGCGATGAGGCGGATTGT---GGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACA-------GCA----------ATGATCGC.................................1911.0010010
droYak3
TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATCAGCAACGACATCGATCGTAAGTGG----GCGA--------------CCCAC------------------------TGAACCACCGAGCTGCCA-CAG-----------------------AACCAAAGTTT---------------------ACA---ATTAAC------------TGT------CT----GGCTT-------------CCCCC-AA--------TGTAGCTACTAACTGC--G------AT-------------C------AAGGGCTTAGGCTACC-------------------------------------------------------------------------A-CG--CATC-------------------TATCTATC----AAACTACT---------------------------------------------------------------------------------TATCCC---CTGAC-CA------------CCCCA-TAACCA-----------------TA------------CCCATAACCCATTGA-TAAACCT-TC----TTT-ATACC------AGA-CTAATTCTG--------------ATTTACTTTCGA-----TCCTTTT-C-AAACAGCCGCTGACAACA-------GTA----------ACGATCGCCGATC---GAACCAACTGAATCTCAAGACCTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GTA----------ACGATCGCCGATC---GAAC.....................2112.00220000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-------GTA----------ACGATCGCCGATC---.........................2011.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------GTA----------ACGATCGCCGATC---GAACCAAC.................2611.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATC---GAACCAACTGAATCTCAAGAC....2811.00100100000000
droEre2
TGATGGTAGCGATGAGGCGGATTGT---GGTCA---AATTAGCAACGATATTGATCGTAAGTGG----GTGA--------------CCCACTG-----------------------ACCCCACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........GATGAGGCGGATTGT---GGTCA---AATTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..........GATGAGGCGGATTGT---GGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000

Generated: 05/17/2015 at 11:03 PM