ID:

dmo_770

 Coordinate:

scaffold_6473:13338082-13338232 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.5 -2.5

Flybase annnotation

exon [dmoj_GLEANR_16581:10]; CDS [Dmoj\GI15877-cds]; intron [Dmoj\GI15877-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6328:168924-168946 +
  2. scaffold_6328:401477-401499 +
  3. dmo_629  scaffold_6473:1725576-1725598 +
  4. scaffold_6473:4634723-4634745 +
  5. scaffold_6473:7758939-7758961 -
  6. scaffold_6473:10787337-10787359 -
  7. dmo_770  scaffold_6473:13338184-13338206 +
  8. scaffold_6473:16783770-16783792 +
  9. scaffold_6496:20339993-20340015 +
  10. scaffold_6500:3872629-3872651 +
  11. scaffold_6500:3932201-3932223 +
  12. scaffold_6500:11987563-11987585 +
  13. scaffold_6500:13882382-13882404 +
  14. scaffold_6500:16184617-16184639 +
  15. scaffold_6500:18592243-18592265 +
  16. scaffold_6500:23451212-23451234 +
  17. scaffold_6540:7086958-7086980 +
  18. scaffold_6540:10467702-10467724 +
  19. scaffold_6680:5683043-5683065 +
  20. scaffold_6680:14207921-14207943 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAACAATCCGCTTCATCTGCTCTTCATGACATTAACGGTGAAACGATCTATCAAAAACTCTTCTGCATCATCAACTACCAACTACCACAACTGATCCACCACAATGGCCCGTCAACCTAACCCCCACAAATGAATCCAACTAACCAACAACAACAAAACAAAAAAAAAAAAAAAAACAAAAAAAAACAAAATGAATAAAGAGCTCGAACAAGCATTCATGGACGATGCAATGCTCGAGTTGTCAACTGCT
**************************************************..........................................((((...(((...)))...))))......................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V041
embryo
 V056
head
 V110
male body		 V049
head
 M060
embryo
.....................................................................................................................................................AACAACAACACAAGAAAAAAAAAAACAACAAAAAAA.................................................................. 36 3 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................AAACAATAAAAAAAAAAAACACGAAAAAAAACAAAA........................................................... 36 3 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................GAACAAGCATTCATGGACGA......................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................GCAATGCTCGAGTTGTCAACT... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AACAAGCATTCATGGACGAT........................ 20 0 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................ATGCTCGAGTTGTCAACTG.. 19 0 1 1.00 1 0 0 0 1 0 0
...............................................................................................................................................AACAACACCAACAAAACAAAAAAAAAAAAAAAAACA........................................................................ 36 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................TCGAACAAGCATTCATGGA............................ 19 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAACCAGAAAAAACAAAATGA........................................................ 33 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................CTGATCCGCCACAGTGGCCCG........................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................AAACAAAAAAAAAAAACAAAACAAAAAAAAACAAAA........................................................... 36 1 1 1.00 1 0 0 0 0 1 0
....................................................................................................................................................AAACAACAAAACAAAAAAAAAAAAAAACACAAAAAA................................................................... 36 2 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................ATTCATGGACGATGCAATGCTCGA............. 24 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................AAACAAAAAAAAAAAAAAAAACCAAAAAAAACAACA........................................................... 36 2 3 0.33 1 0 0 1 0 0 0
...........................................................................................................................................................AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA............................................................ 36 1 20 0.25 5 0 5 0 0 0 0
...........................................................................................................................................................AAAACAAAAAACAACAAAAAAACAAAAAAAAACAA............................................................. 35 2 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................AAACAAAAAAAAAAAAAAAAACAACAAAGAACAAA............................................................ 35 2 6 0.17 1 0 0 1 0 0 0
........................................................................................................................................................AACAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAA............................................................... 36 1 8 0.13 1 0 1 0 0 0 0
...........................................................................................................................................................AAAACAAAAACAAAAAAAAAAATAAAAAAAAACAAA............................................................ 36 2 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................TAACCAAAAACAACAAAAAAAAAAAAAAAAAAAAAA.......................................................................... 36 2 9 0.11 1 0 0 1 0 0 0
..............................................................................................................................................................ACAAAAAAAACAAAAAAAACAAAAAACAACAA............................................................. 32 2 11 0.09 1 0 0 1 0 0 0
.........................................................................................................................................................ACAAAAAAAAAATAAAAAAAAAAACAAAAAAAAACA.............................................................. 36 2 14 0.07 1 0 1 0 0 0 0
...........................................................................................................................................................AACAGAAAAAAAAAAAAAAAAACAAAAAAAAACAAA............................................................ 36 2 14 0.07 1 0 1 0 0 0 0
.........................................................................................................................................................ACAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACA.............................................................. 36 1 14 0.07 1 0 1 0 0 0 0
..........................................................................................................................................................TAATACAAAAAAGAAAAAAAAAACAAAAAAAAACAA............................................................. 36 3 16 0.06 1 0 1 0 0 0 0
.......................................................................................................................................................AAACAAAACAAAAAAAAAAAAAAAAACAAACAAAAA................................................................ 36 2 18 0.06 1 0 0 0 0 1 0
.............................................................................................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAACACAAT.......................................................... 36 2 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................AACAAAACAAAAAAAAAAAAAAA............................................................................ 23 0 20 0.05 1 0 0 0 0 0 1
..........................................................................................................................................................CAAAACAAAAAAAAAAAAAAAA........................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................CAAAAAAAAACAAAAAAAAAAAACAAAAAAAAACAA............................................................. 36 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TATTGTTAGGCGAAGTAGACGAGAAGTACTGTAATTGCCACTTTGCTAGATAGTTTTTGAGAAGACGTAGTAGTTGATGGTTGATGGTGTTGACTAGGTGGTGTTACCGGGCAGTTGGATTGGGGGTGTTTACTTAGGTTGATTGGTTGTTGTTGTTTTGTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTACTTATTTCTCGAGCTTGTTCGTAAGTACCTGCTACGTTACGAGCTCAACAGTTGACGA
**************************************************..........................................((((...(((...)))...))))......................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V041
embryo
 V049
head
 V056
head
 M046
female body
.............................................................................................CTAGGTGGTGTTGCCGGGCAG......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...........................................TGGTAGATAGTTTTTGGGGAGA.......................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
..................................................................................................TGGCGTCACCGTGCAGTTGGA.................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
...........................................................................................................CGGGCCGTGGGTTTGGGGGT............................................................................................................................ 20 3 10 0.10 1 0 0 1 0 0
.......................................................................AGCTGTTGGATGATGGTGT................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 1 0
................................................................................................................................................................................................TCCTATTTCCCGAGCTTG......................................... 18 3 20 0.05 1 0 0 0 0 1
.....................................................................................................................................TTAGGGTGATTGATTGTT.................................................................................................... 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:13338032-13338282 + dmo_770 ATAACAATC--------------------------CGCTTCATCTGCTCTTCATGACATTAACGGTGAAACGA-TCTATCA-------AAAACTCTTCTGCAT---------------------------------------------------------------------------------------------CATCAACTAC-------CAACTACCACAACTGATCCACCACAATGGCCC---------------------GTCAA-CCTAACCC---C------------------------------------CACA------AATGAATCCAACT-AACC-A--------ACAA--------CA---AC-AAAACAAAAA------------------AA------------AAA---------AAAAAAACAAAA--AAA--AA-------CAA--------AATG-----------------------AA--TAAAGAGCTCGAACAAGCATTCATGGACGATGCAATGCTCGAGTTGTCAA--------------------CTGCT
droVir3 scaffold_12970:9309710-9309891 - CATAAA--T-------TTTC------------------------------------------------------------A-------AAAAATTTTCTGCATTATCCAT------TA-----------------------------------------------------------------------------------------------------CAACAACTGACCCACCACAATGGCCCACAAATCTCCACAAT------GCGAA-CCTAACCT--CA------------------------------------CATA------AACGAACCCAACT-AACC-----C------------AAAATAAAAA-------------------------------C------------TAA--------------------------------------------------AC-------AT--------------ACAAAAAAGATCTCGAGC---------TCGACGATGTGATGCTCGAGCTGTCAA--------------------CTGCT
droGri2 scaffold_15203:311537-311789 - TACCAA-TA------CGT------------------TTCATCC----------TGCCATTAAC-CTGAACCGAATCT--CAACCACAACAACATTTTCTGCAT---------------------------------------------------------------------------------------------TGTTAACTAA-------------CAACAACTGACCCACAAC--TGGCCCACAA---------AT------GCTAA-CCTAACAC--CCCGCAAACCCG--------------------------------------TGA-TCCCATTAAACC-----CAAAACACACAA----AAAAAAA-------------------------------T------------TGA--------------------A--AAC--AAAAAAATGTGTAAAAAATAAAAA-----------------------CC--AAAAGACTCCGAGCAATCGTTCGTGGATGATGTAATGCTTGAATTTTCAA--------------------CTGCT
droWil2 scf2_1100000004590:2057422-2057712 - ATCATCATCCTTGCATGATACTTCTGTGCTGGGCGCGCTCTAATTAACCCACATGA-----------------------------------------------------TGCCACATTTAACTTGCC-----------------------------------------------------------------------TCAACAAACAACAACCAACAACAACA-----ACAACAAC--TTGTCTAAAT---------CCGCAT--TCC-C-TCTCAAAC--CCTTCTAACCAATTAT----------------------C---------------CCCAACT-AATCCAATCC-----AC------TAAAAAAAA----------AAACAAAATGTAACCAAAAAACAAAAAAAAAATATGTAAAACT------------AA------------------------------AAACCAAACAC--------------AA--AAAAGAACTCGAGCAAACATTTCTGGATGAAGTTGTGCTCGAACTGGCT-----------------------GGT
dp5 XL_group1e:6994560-6994796 + CCACGC--A------TGTTC------------------TCTCTGTGTGCCCCATGGCC-------------------------------------------------CATGCCGCATG----TTGCATTAACCAAAA----------------ACCCAAA---------------AA-------------------------C--------------------------------------------------------------CAAAAAC----CAACCAACATCCAACCGATTCTTCCCATACTAAATGTTTCCTCACGCAACCCGAA---------ACT-AACCCAATCCAAAAAACAAAA---AAT----------------------------------------------------------------AA------A--ACCAA-----------A----------AAAATAACCAA--------------CT--AAAAGAGCTCGAGCAAGCATTCGTGGACGAGGTGGTGCTCGGACTGGCTG-----------------CTAGTGCT
droPer2 scaffold_18:312408-312498 - ATTCGC--C------------------------AAAG------------------------------------------------------------------------------------------------------------------------------------------GAAACAAAACAA--------------AA-------------------------------------------------------------T-AAAAA-------------------------------------------------------CAAAATATAACGAAATT-----------------------------------------------------------------------------------------------------------------------------------A-----------------------AG--CATTGAAAAGGAAGAAATCTGTAAGGGCAATGCATT---------GCCC--------------------------
droAna3 scaffold_13340:3541949-3542059 + AACAAC--A------------------------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAAT-----------------------------AACAAAA-------------------------------A------------AGC--------------------------------------------------AA-----ACAAAAAAAACAAAACAAA-------------CATCAGACAATGCAAAATGCAATTGAGATGCAAATGCAAATTGCATTTGCCAC----ATGTTGCA
droBip1 scf7180000396431:586689-586743 - AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--AAAAGAACTCGAGCAAGCGTTTGTTGACGAGGTGGTGCTGGGACTGGCT--------------------------
droKik1 scf7180000301542:49655-49846 - CTGGCA---------TGTCC----------------TGTGCGCTTGCTCT--------------------------------------------------------CCAT------TA----TAACATTAACCCAAACAATAAATTTTCAAAAA------TACAACGCAAACTCC----------GA--------------AA-------------------------------------------------------------T-AAAAA-------------------------------------------------------CAAATCCTAACCCAACT-AACC-----C------------GCAATAAAAA-------------------------------C------------CGA--------------------------------------------------AAACCAAACAA--------------AA--ATAAGAGCTCGACCAAGCGTTTATGGATGAAGTGGTGCTGGAACTGGCGG--------------------CTGGT
droFic1 scf7180000453829:958199-958378 - CTCATC--C------------------------GCAT--------GCG--------------------------------------------------------------------------TCACATAACCCCAAAAAAA--------AAAAA------TGCAAC--AAACTCC----------GATTCTTCCGCCCCC--------------------------------------GAAAAC---------------------CATTAA-C-----------------------------------------------------CGAATCCTAACCCGACT-AACC-----C------------ATAACGAAAA-------------------------------C------------CGA---------AT-A----------------------------------AAAAA-----------------------AC--CAAAGAGCTCGAGCAAGCGTTCGTGGATGAGGTGGTGCTGGAACTGGCTG--------------------GTGGT
droEle1 scf7180000491044:634877-634991 + ATTAAA--C------------------------ATCA------------------------------------------------------------------------------------------------------------------------------------------AACATAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------C-GAAA-----C------------AAAACGAAAA-------------------------------A------------CAT-------A-AA----------------------------TAAAAAACAAAAAAACAGAG----------------GC--TT--AAGTTAAAGTAAA--------------GTACT---------CTAC-TTGGAGCTGCCCGCCTGCGAATGGT
droRho1 scf7180000779841:515003-515111 - CCCAAA--A------------------------ACCA------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------C--------------------------------------------------------------CATAAA-------------------------------------------------------CCAATCCTAACCCAACT-AACC-----C------------ATAATGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------
droBia1 scf7180000301760:4588567-4588614 - AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--AAAAGAGCTCGAGCAAGCGTTTGTGGATGA---------------------------------------------
droTak1 scf7180000415843:776456-776552 + AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACT-AACC----CC------------ATAATGAAAA-------------------------------C------------CGTAAACCG------------AAAAACCTCG-----------------------A-----------------------AC--AAAAGAGCTCGAGCAGGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------
droEug1 scf7180000409631:401633-401723 - AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCCTAACCCAACT-AACA-----C------------ATAATGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------
dm3 chrX:8989965-8990082 - AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACT-AACC-A--------ACCAATCCAT--------TCAAATCAAAAA------------------AC------------GGA---------ATTGA------A--ACC--AC-------CGTAAAAAAAAAAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGCGGTGCTGGAACTAGCT--------------------------
droSim2 x:8536710-8536817 - AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATCCTAACCCGACT-AACC-A--------ACCAATCCAT--------TCAAACAAAAAA------------------AT------------GGA---------AT-A-------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------
droSec2 scaffold_34:350110-350230 - AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATCCTAACCCGACT-AACC-A--------ACCAAACCAT--------TCAAACAAAAAA------------------AC------------GGA---------ATTGA------A--ATC--CA-------CGT--------TAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------
droYak3 X:12326552-12326664 + AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACT-AACCCAATCC------------ATAACAAAAT-------------------------------C------------CATAACCCGGGAAT-AA------A--ACCCG-----------AA---AAAAAAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------
droEre2 scaffold_4690:6127030-6127221 + ATCATC--G------------------------CGCGCACCAT-------------------------------------------------------------------------------TTACATTAACCCGAA----------------A------TACAAC--GATTTTC----------CATTTCTACGCCCTCAACCAA------------------ACTCAACCACA-------------T---------C------CGTAAA-------------------------------------------------------CCAATCCTAACCCGACT-AACC-AATCC------------ATAAAAAAAA-------------------------------C------------CGA---------AT-AA------A--ACTCG-----------A--------AAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATAACAATC--------------------------CGCTTCATCTGCTCTTCATGACATTAACGGTGAAACGA-TCTATCA-------AAAACTCTTCTGCAT---------------------------------------------------------------------------------------------CATCAACTAC-------CAACTACCACAACTGATCCACCACAATGGCCC---------------------GTCAA-CCTAACCC---C------------------------------------CACA------AATGAATCCAACT-AACC-A--------ACAA--------CA---AC-AAAACAAAAA------------------AA------------AAA---------AAAAAAACAAAA--AAA--AA-------CAA--------AATG-----------------------AA--TAAAGAGCTCGAACAAGCATTCATGGACGATGCAATGCTCGAGTTGTCAA--------------------CTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCATTCATGGACGA.............................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGCTCGAGTTGTCAA--------------------CT...2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCATTCATGGACGAT............................................2011.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGAGTTGTCAA--------------------CTG..1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAAGCATTCATGGA................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGACGATGCAATGCTCGA.................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................A---AC-AAAACAAAAA------------------AA------------AAA---------AAAAAAACAAAA--AAA--AA-------A....................................................................................................................3680.131010000
...................................................................................................................................................................................................................................................................................................................................................................................A---AC-AAAACAAAAA------------------AA------------AAA---------AAAAA............................................................................................................................................23200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................C-AAAACAAAAA------------------AA------------AAA---------AAAAAA...........................................................................................................................................22200.051100000
droVir3
CATAAA--T-------TTTC------------------------------------------------------------A-------AAAAATTTTCTGCATTATCCAT------TA-----------------------------------------------------------------------------------------------------CAACAACTGACCCACCACAATGGCCCACAAATCTCCACAAT------GCGAA-CCTAACCT--CA------------------------------------CATA------AACGAACCCAACT-AACC-----C------------AAAATAAAAA-------------------------------C------------TAA--------------------------------------------------AC-------AT--------------ACAAAAAAGATCTCGAGC---------TCGACGATGTGATGCTCGAGCTGTCAA--------------------CTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTCGAGCTGTCAA--------------------CT...2012.002200000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------TCGACGATGTGATGCTCGAGCT..............................2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTCGAGCTGTCAA--------------------CTG..2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGATGTGATGCTCGA.................................1911.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTCGAGCTGTCAA--------------------C....1911.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGC---------TCGACGATGTGATGCT....................................2211.001000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGAGC---------TCGACGATGTGATGCTCG..................................2811.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGC---------TCGACGATGTGATGCTC...................................2411.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGTGATGCTCGAGCTGTCA..........................2311.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------TCGACGATGTGATGCTCGA.................................2011.001000000000000000010000000000000000000000000000000000000000000000
droGri2
TACCAA-TA------CGT------------------TTCATCC----------TGCCATTAAC-CTGAACCGAATCT--CAACCACAACAACATTTTCTGCAT---------------------------------------------------------------------------------------------TGTTAACTAA-------------CAACAACTGACCCACAAC--TGGCCCACAA---------AT------GCTAA-CCTAACAC--CCCGCAAACCCG--------------------------------------TGA-TCCCATTAAACC-----CAAAACACACAA----AAAAAAA-------------------------------T------------TGA--------------------A--AAC--AAAAAAATGTGTAAAAAATAAAAA-----------------------CC--AAAAGACTCCGAGCAATCGTTCGTGGATGATGTAATGCTTGAATTTTCAA--------------------CTGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATCATCATCCTTGCATGATACTTCTGTGCTGGGCGCGCTCTAATTAACCCACATGA-----------------------------------------------------TGCCACATTTAACTTGCC-----------------------------------------------------------------------TCAACAAACAACAACCAACAACAACA-----ACAACAAC--TTGTCTAAAT---------CCGCAT--TCC-C-TCTCAAAC--CCTTCTAACCAATTAT----------------------C---------------CCCAACT-AATCCAATCC-----AC------TAAAAAAAA----------AAACAAAATGTAACCAAAAAACAAAAAAAAAATATGTAAAACT------------AA------------------------------AAACCAAACAC--------------AA--AAAAGAACTCGAGCAAACATTTCTGGATGAAGTTGTGCTCGAACTGGCT-----------------------GGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGTGCTCGAACTGGCT-----------------------GGT2411.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGATGAAGTTGTGCTCGAACTGGCT-----------------------...2911.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTTGTGCTCGAACTGGCT-----------------------GG.2411.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAAAACAAAAAAAAAA...............................................................................................................................................................21200.05100010
dp5
CCACGC--A------TGTTC------------------TCTCTGTGTGCCCCATGGCC-------------------------------------------------CATGCCGCATG----TTGCATTAACCAAAA----------------ACCCAAA---------------AA-------------------------C--------------------------------------------------------------CAAAAAC----CAACCAACATCCAACCGATTCTTCCCATACTAAATGTTTCCTCACGCAACCCGAA---------ACT-AACCCAATCCAAAAAACAAAA---AAT----------------------------------------------------------------AA------A--ACCAA-----------A----------AAAATAACCAA--------------CT--AAAAGAGCTCGAGCAAGCATTCGTGGACGAGGTGGTGCTCGGACTGGCTG-----------------CTAGTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGACGAGGTGGTGCTCGGACTG.............................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGTGGTGCTCGGACTG.............................2111.0010100000000
droPer2
ATTCGC--C------------------------AAAG------------------------------------------------------------------------------------------------------------------------------------------GAAACAAAACAA--------------AA-------------------------------------------------------------T-AAAAA-------------------------------------------------------CAAAATATAACGAAATT-----------------------------------------------------------------------------------------------------------------------------------A-----------------------AG--CATTGAAAAGGAAGAAATCTGTAAGGGCAATGCATT---------GCCC--------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--CATTGAAAAGGAAGAAATCTGTAAG..................................................2613.003300000
droAna3
AACAAC--A------------------------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAAT-----------------------------AACAAAA-------------------------------A------------AGC--------------------------------------------------AA-----ACAAAAAAAACAAAACAAA-------------CATCAGACAATGCAAAATGCAATTGAGATGCAAATGCAAATTGCATTTGCCAC----ATGTTGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----ACAAAAAAAACAAAACAAA-------------CA...............................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................AAAA-------------------------------A------------AGC--------------------------------------------------AA-----ACAAAAAAAA.......................................................................................2050.201010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----ACAAAAAAAACAAAACAAA-------------CC...............................................................2250.201010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAAAAACAAAACAAA-------------CC...............................................................2170.141010000
......................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------------A------------AGC--------------------------------------------------AA-----ACAAAAAAAA.......................................................................................1890.111010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAAACAAA-------------CAC..............................................................20200.051010000
droBip1
AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--AAAAGAACTCGAGCAAGCGTTTGTTGACGAGGTGGTGCTGGGACTGGCT--------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTGGCA---------TGTCC----------------TGTGCGCTTGCTCT--------------------------------------------------------CCAT------TA----TAACATTAACCCAAACAATAAATTTTCAAAAA------TACAACGCAAACTCC----------GA--------------AA-------------------------------------------------------------T-AAAAA-------------------------------------------------------CAAATCCTAACCCAACT-AACC-----C------------GCAATAAAAA-------------------------------C------------CGA--------------------------------------------------AAACCAAACAA--------------AA--ATAAGAGCTCGACCAAGCGTTTATGGATGAAGTGGTGCTGGAACTGGCGG--------------------CTGGTSizeHit CountTotal NormTotal
No Reads
droFic1
CTCATC--C------------------------GCAT--------GCG--------------------------------------------------------------------------TCACATAACCCCAAAAAAA--------AAAAA------TGCAAC--AAACTCC----------GATTCTTCCGCCCCC--------------------------------------GAAAAC---------------------CATTAA-C-----------------------------------------------------CGAATCCTAACCCGACT-AACC-----C------------ATAACGAAAA-------------------------------C------------CGA---------AT-A----------------------------------AAAAA-----------------------AC--CAAAGAGCTCGAGCAAGCGTTCGTGGATGAGGTGGTGCTGGAACTGGCTG--------------------GTGGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATTAAA--C------------------------ATCA------------------------------------------------------------------------------------------------------------------------------------------AACATAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------C-GAAA-----C------------AAAACGAAAA-------------------------------A------------CAT-------A-AA----------------------------TAAAAAACAAAAAAACAGAG----------------GC--TT--AAGTTAAAGTAAA--------------GTACT---------CTAC-TTGGAGCTGCCCGCCTGCGAATGGTSizeHit CountTotal NormTotal
No Reads
droRho1
CCCAAA--A------------------------ACCA------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------C--------------------------------------------------------------CATAAA-------------------------------------------------------CCAATCCTAACCCAACT-AACC-----C------------ATAATGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--AAAAGAGCTCGAGCAAGCGTTTGTGGATGA---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACT-AACC----CC------------ATAATGAAAA-------------------------------C------------CGTAAACCG------------AAAAACCTCG-----------------------A-----------------------AC--AAAAGAGCTCGAGCAGGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCCTAACCCAACT-AACA-----C------------ATAATGAAAA-------------------------------C------------CGA--------------------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGAGGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACT-AACC-A--------ACCAATCCAT--------TCAAATCAAAAA------------------AC------------GGA---------ATTGA------A--ACC--AC-------CGTAAAAAAAAAAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGCGGTGCTGGAACTAGCT--------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGCGGTGCTGGA.................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTGTGGATGATGCGGTGCTGG..................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGCGGTGCTGGAACT..............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGCGGT.......................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGCAAGCGTTTGTGGATGATGC..........................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAAGCGTTTGTGGATGATGCGG........................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTGTGGATGATGCGGTGCTGG..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCGGTGCTGGAACTAG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTGTGGATGATGCGGT.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCGTTTGTGGATGATGCGGTGC.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGCGGTGCTGGAA................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CAT--------TCAAATCAAAAA------------------AC------------GGA---------AA...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGCGGTGCTGGAACTA.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGATGCGGTGCTGGAACATC............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGCAAGCGTTTGTGGATGAT............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAAGCGTTTGTGGATGATGCGGT.......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGCGGTGCTGGAACTA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTGTGGATGATGCGGTGG.....................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAAGCGTTTGTGGATG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTGTGGATGATGCGG........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAAGCGTTTGTGGATGATGC..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGATGATGCGGTGCTGGAACATT............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTGTGGATGATGC..........................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTGTGGATGATGCGGTGC.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGCGGTGCTGGAACTAGCT--------------------------2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGCAAGCGTTTGTG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGCGGTGCTGGA.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAGCGTTTGTGGATG..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTGTGGATGATGCGGTGCT....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTCGAGCAAGCGTTT.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATGCGGTGCTGGAAC...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGATGCGGTGCTGGAACT..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATGCGGTGCTGGAACT..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGGTGCTGGAACTA.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGCGGTGCTGGAACTAGCT--------------------------2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGCGGTGCTG...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGATGATGCGGTGC.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGATGATGCGGTGCTGGAAC...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGATGATGCGGTGCTGGAAC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGCGGTGCATC..................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACT-AACC-A--------ACCC.......................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AC-------CGTAAAAAAAAAAAA-----------------------A..............................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAAAAA------------------AC------------GGA---------ATTGA------T--GA.................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGCGGTGCATC..................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATCCTAACCCGACT-AACC-A--------ACCAATCCAT--------TCAAACAAAAAA------------------AT------------GGA---------AT-A-------------------------------------AA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAAGCGTTTGTGGAT...............................................1911.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGTGGTGCTGGA.................................2111.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGATGTGGTGCTGGAACTG.............................2511.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTCGAGCAAGCGT.......................................................1720.50100000000001000000
droSec2
AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATCCTAACCCGACT-AACC-A--------ACCAAACCAT--------TCAAACAAAAAA------------------AC------------GGA---------ATTGA------A--ATC--CA-------CGT--------TAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGATGATGTGGTGCT....................................2011.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGTGGTGCTGGA.................................2411.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGTTTGTGGATGATGT..........................................2011.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGTGCTGGAAC...............................1911.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGAGCAAGCGTTTGTG..................................................1911.0010010
droYak3
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACT-AACCCAATCC------------ATAACAAAAT-------------------------------C------------CATAACCCGGGAAT-AA------A--ACCCG-----------AA---AAAAAAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGTTTGTGGATGATGT..........................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGATGATGTGGTGCTGGAACT..............................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTGTGGATGATGT..........................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTGTGGATGATGTG.........................................1911.00100000010000
droEre2
ATCATC--G------------------------CGCGCACCAT-------------------------------------------------------------------------------TTACATTAACCCGAA----------------A------TACAAC--GATTTTC----------CATTTCTACGCCCTCAACCAA------------------ACTCAACCACA-------------T---------C------CGTAAA-------------------------------------------------------CCAATCCTAACCCGACT-AACC-AATCC------------ATAAAAAAAA-------------------------------C------------CGA---------AT-AA------A--ACTCG-----------A--------AAAA-----------------------AC--TAAAGAGCTCGAGCAAGCGTTTGTGGATGATGTGGTGCTGGAACTGGCT--------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAGCGTTTGTGGATGATGTGGT.......................................2611.0011000000
.....................................................................................................................................................................................................CTCAACCAA------------------ACTCAACCACA-------------T---------...............................................................................................................................................................................................................................................................................................................................2111.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCGTTTGTGGATGATGTGGT.......................................2511.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCGTTTGTGGATGATGT..........................................2211.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGATGATGTGGTGCTGGA.................................2211.0011000000

Generated: 05/17/2015 at 11:01 PM