ID:

dmo_77

 Coordinate:

scaffold_6540:6630484-6630545 +

 Confidence:

candidate

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATACATATATGTATATATACACCATTTGGCTCATTGGAAAATGTTACCGACTACAAAATACTCATTCATTATTTAAACAATGTGAGTTGTGAATTTGTTTTTTGCAGTCGGTAATACCATAGTACAACGCTCTTAATTGTTTTTGTTTGGATTTTATGTAT

*************************************.....(((((((((((.(((((.((..((((((.(((((.......))))).))))))..)).))))).))))))))))).........************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M060

embryo

 M046

female body

 V041

embryo

 V056

head
.........................................................................................GTGAATTTGTTTTTTGCAGTCG................................................... 22 0 1 231.00 231 217 5 3 5 1
.........................................................................................GTGAATTTGTTTTTTGCAGTC.................................................... 21 0 1 4.00 4 4 0 0 0 0
.........................................................................................GTGAATTTGTTTTTTGCAGTCT................................................... 22 1 1 2.00 2 2 0 0 0 0
.........................................................................................GTGTATTTGTTTTTTGCAGTCG................................................... 22 1 1 1.00 1 0 1 0 0 0
.........................................................................................GTGAATTTGTTTTTTCCAGTCG................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................GTGAATTTGTTTTTTGCAGTGG................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................GTGAATTTGTTTTTTGCAGTCGT.................................................. 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................GTTAATTTGTTTTTTGCAGTCG................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................GTGAATTTGTTATTTGCAGTCG................................................... 22 1 1 1.00 1 0 0 1 0 0
.........................................................................................GGGTATTTGTTTTTTGCAGTCG................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................TACAAAATACTCATTCATTATT........................................................................................ 22 0 1 1.00 1 0 0 1 0 0
.........................................................................................GTGACTTTGTTTTTTGCAGTCG................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................CTGAATTTGTTTTTTGCAGTCG................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................GAGAATTTGTTTTTTGCAGTCG................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ACTACAAAATACTCATTCATTA.......................................................................................... 22 0 2 0.50 1 1 0 0 0 0
................................................................................................................TAATACCTTAATACAAAGCTC............................. 21 3 4 0.25 1 0 0 0 0 1

Anti-sense strand reads

ATATGTATATACATATATATGTGGTAAACCGAGTAACCTTTTACAATGGCTGATGTTTTATGAGTAAGTAATAAATTTGTTACACTCAACACTTAAACAAAAAACGTCAGCCATTATGGTATCATGTTGCGAGAATTAACAAAAACAAACCTAAAATACATA

************************************.....(((((((((((.(((((.((..((((((.(((((.......))))).))))))..)).))))).))))))))))).........************************************* 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body
....................................CCTCTTGCGATGGCTGATG........................................................................................................... 19 3 10 0.10 1 1 0
........................................................................................................CGACAGCCATTATGGAATA....................................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:6630434-6630595 + dmo_77 candidate TATACATATATGTATATATACACCATTTGGCTCATTGGAAAATGTTACCGACTACAAAATACTCATTCATTATTTAAACAATGTGAGTTGTGAATTTGTTTTTTGCAGTCGGTAATACCATAGTACAACGCTCTTAATTGTTTTTGTTTGGATTTTATGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATACATATATGTATATATACACCATTTGGCTCATTGGAAAATGTTACCGACTACAAAATACTCATTCATTATTTAAACAATGTGAGTTGTGAATTTGTTTTTTGCAGTCGGTAATACCATAGTACAACGCTCTTAATTGTTTTTGTTTGGATTTTATGTATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................GTGAATTTGTTTTTTGCAGTCG...................................................221231.0023135015217
.........................................................................................GTGAATTTGTTTTTTGCAGTC....................................................2114.004000004
.........................................................................................GTGAATTTGTTTTTTGCAGTCT...................................................2212.002000002
.........................................................................................GTGAATTTGTTTTTTGCAGTCGT..................................................2311.001000001
....................................................TACAAAATACTCATTCATTATT........................................................................................2211.001100000
..................................................ACTACAAAATACTCATTCATTA..........................................................................................2220.501000001

Generated: 10/20/2015 at 06:59 PM