ID:

dmo_763

 Coordinate:

scaffold_6473:12827027-12827140 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0

Flybase annnotation

exon [dmoj_GLEANR_15550:3]; CDS [Dmoj\GI14758-cds]; exon [dmoj_GLEANR_15550:2]; CDS [Dmoj\GI14758-cds]; intron [Dmoj\GI14758-in]

Repeatable elements

NameClassFamilyStrand
(ATG)nSimple_repeatSimple_repeat+
(CTG)nSimple_repeatSimple_repeat+
(ATG)nSimple_repeatSimple_repeat+
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------##################################################
CCAACTCCAACTCCAATCACTCCTCGAATGCCAGCAAATCAAATTTTCATGTGAACATCAATACACAGCAGCCAACAACAACAACAACAATACCAACAGCAACTTCAGCCACATCATCATCATCATCAGAAGCAGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCGTCGTCGTCATCATTGCCCATTAGGCGTCACATTTCGCACACGAC
***************************************************************...................................((.......)).....................************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
...........................................................................................................GCCACATCATCATCATCATCAGA.................................................................................... 23 0 1 1.00 1 1 0 0
..........CTCCAATCACTCCTCGAATGCCAGC................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0
.................................................................................................................................................................................................GCGTCACATTTCGCACACGAC 21 0 1 1.00 1 1 0 0
........................................................................................AATACCAACAGCAACTTCAGCCACAT.................................................................................................... 26 0 1 1.00 1 1 0 0
........AACTCCAATCACTCCTCGAATGCCAGC................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
..............................................................................................................................................................................CGTCATCATTGCCCATTAGG.................... 20 0 1 1.00 1 1 0 0
...............................................................CACAGCAGCCAACAACAACAA.................................................................................................................................. 21 0 1 1.00 1 1 0 0
..........CTCCAATCACTCCTCGAATGCCAGCA.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0
......................CTCGCATGCCAGTAAATCAGA........................................................................................................................................................................... 21 3 3 0.33 1 0 0 1
.................................................................CAGCAGCCAACAACAACAACA................................................................................................................................ 21 0 4 0.25 1 0 1 0
...................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCA........................................................... 24 0 20 0.10 2 0 2 0
....................................................................................................................................................AGCAGCATCATCATCATCATC............................................. 21 0 20 0.05 1 1 0 0

Anti-sense strand reads

GGTTGAGGTTGAGGTTAGTGAGGAGCTTACGGTCGTTTAGTTTAAAAGTACACTTGTAGTTATGTGTCGTCGGTTGTTGTTGTTGTTGTTATGGTTGTCGTTGAAGTCGGTGTAGTAGTAGTAGTAGTCTTCGTCGTCGTCGTCGTCGTCGTCGTAGTAGTAGTAGTAGCAGCAGCAGTAGTAACGGGTAATCCGCAGTGTAAAGCGTGTGCTG
************************************************************************************...................................((.......)).....................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V041
embryo
 V110
male body		 V056
head
 V049
head
 M046
female body
................................TCGATTAGTTTAGAACTACACT................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
................................GCGATAAGTTTAAAAGTACACT................................................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0
................................TCGATTAGTTTAGATGTACACT................................................................................................................................................................ 22 3 3 0.33 1 0 1 0 0 0 0
...................................................................................CGTTGTTATGGTTGTGGTTGAAG............................................................................................................ 23 2 5 0.20 1 0 0 1 0 0 0
......................................................................................TGTTATGTTTGTCGATGGAGT........................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0
.............................................................................................................................................................TAGTAGTAGTAGCAGCAGCAG.................................... 21 0 20 0.10 2 0 0 2 0 0 0
................................TCGATTTGTTTAAACGTACACT................................................................................................................................................................ 22 3 13 0.08 1 0 0 0 0 1 0
....................................................................................................TTGAAGTCGCTGTATTAG................................................................................................ 18 2 14 0.07 1 1 0 0 0 0 0
...................................................................................................................................................................TAGTAGCAGCAACAGTAG................................. 18 1 20 0.05 1 0 0 0 0 0 1
..............................................................................................................................................................TGTAGTAGTAGCAGCAACAGTAG................................. 23 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:12826977-12827190 - dmo_763 CCAACTCC-----AACTC-------------------------------------------------------------------------CA-----------ATCA-----------CTCCTCGAATGCCAGCAAATCAAATTTTCA----TGTG-----------------------------------------------------------------------------AACATCAAT----------A-----CAC------AGC---------------------------AGC--CAACAACAA-----------------CAACA------A---------CAATACCAACAGC------AA-----------------CTTC----A----G------------------CC------------A------------------CATC----------------------------------------------ATC----------A------T---CATCATCAGAAGCAGC---AG-------------------CAGCAG------CAG------------CAGC-----AGCATCATC----AT------------C------------ATC---------------ATC--------------------GTCGTCGTCATC---------------------------ATTGCCCATT---AGGCGTCACAT--TTCGCAC--ACGAC
droVir3 scaffold_12970:2531631-2531807 + CTCCTCG-----------------------------------------------------------------------------------------------------------------------AATGCCAGCACATCCAGTTTCCA----CGTA-----------------------------------------------------------------------------CACATCAAT----------A-----CAC------AGCAA------------------------------CAA-----------------------CAGCAA---------------CAACAGC------AACAACAAC-----------------AAC----A----G-----------------ACA---------AC---------------------AGT-------------------------------CGCTTTAGACAC-------------------------------ACAAAATCCATC---AA-------------------CAACAA------CAG------------C--------------ATC----------------ATC------------ATCG---------------------------TC--------GT------CATC---------------------------ATTGCCCATC---AGACGTCACAT--CTCGCAC--ACGAC
droGri2 scaffold_15203:1376898-1377083 + CCAACAAC-----AACCA-------------------------------------------------------------------------CA-----------ACAA-----------CCAC----------------------------------------------------------------------------------------------------------------------------------------AACAACA---ACAGCAACAGCA--A------CAAACAGCAGGTGCAGCAACAA-----------------C---------------AATAACAGTCGCCCCTGA------AA-----------------------------------CATA-----TG------------------------------------CA--------G-----------------------C---------------AA----------CA------A---CATCATCAG------CAACAGC----------A------ACAGCAA------CTGC------------AA-----------CTGC----AT------------C------------------CGCAACATCCG--------------------------------CATC---------------------------ATTGCCCATT---AGGCGCCACAT--CTCGCAT--ACGAC
droWil2 scf2_1100000004902:2149838-2150055 - CTATCGCC-----ACATC-CACACCGCCTGCAGTCATCGT---------------------------------------------------CG-----------ACGC-----------CGCC------------A-----------------GGA-----------------C------------------------------------------------------------TGCA---GC----------ATGCCCTGCAGCA---GC---------AG---------------------CAACAGCAT-----------------TTGCTACAGCAGCAACAGC---------------------AGC---------ACCTG--CAAC----A----GCAAC---------TACAGCA-----------------------------------------------------------------------------------------------------AC---AACAACA------GC---AGCAGCAGCAGCA-------TCAGCAG------CAGC------------AA-----------CATCATCA-------------------------------CG------------CTCACCC--------ACA---------------CC------------A-----AC---------CGCCCACA---CCGCGACCCAG--CTCGCCC--CCGAC
dp5 XL_group1a:3422981-3423147 - CCAACAGC-----AACAA-------------------------------------------------------------------------CA-----------ACAA-----------CAACAC------CAGCA---------------------------------ACACCAA----------------------------------------------------------------------------------------------C---------AACA------CCAACATCAGCTTCAACAACAG-----------------CATCAA---------------CAACACCAACAGC------AAC-------------------------------AGC---------AGCAGCAACAC---------CAACAAC-------------------------------------------------------------ACC-------------------------AACAG------CAGCAGC----------AACAGCAA------------CACC--------------------ACCAGCACC----AGCAACAGCTTCAT-------------------------------------------------------------------------------------------------------------------------CATCA--TCATC
droPer2 scaffold_14:360778-360979 - CCATTTCG------CT-----------------------------------------------------------------------------------------------------------------------CAATCAAATATCAA----ACTACTCCCTAA-------------------------------------------------------------------GCCGCAGCAGCAGT-------TCGCACC--ATCATCACC---------AC---------------------CACCATCAG-----------------CCGCAG---------CAGCACCATCATC------------GTC---------ACAGT--CCCC----A----GCAAC---------TGCAGC----------------------------------------------------------------------------------CA-------------------CACC---ATCA------TC---ATCATCATCATCA-------CCAGCAG------CAGC------------AG-----------CAGCAGCA------------------------------------------------------------------------------------CTCTTCCTCCTCCCATCGTCTGTATT----------AT---------------CCA--GCGGG
droAna3 scaffold_13248:1405193-1405401 + GCAACATC-----AGCTC-------------------------------------------------------------------------CT-----------CCCG-----------CAGCAC------CACTT---------------------------------GCAACAT------------------------------------------------------CACCTGCAACATC-------------------------------------------------------ACCACCACCAACAA-----------------CAACAA---CAA---------CAGCAGC------AGC---AAC--------------AACAAC----A----G------------------CA------------A------------------CATC-------------------------------AGCTTT---------TGC----------CACAACAA---CAACAACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------CAACAACATCATG-AC--------TTCCT---CAGCGCCGCTCTACT-----------------------ATC---CGCCCCCTCAT--CCCTCTC--CGGCG
droBip1 scf7180000395926:19800-20014 + AA--CAGC-----AACCG-------------------------------------------------CCACCGCCTTCCCAACAGCAGCAGCA-----------ATTG-----------CATC---------------------------------------------------------------------------------------------------------------------AGCTCA-------AGTCACCGC------AAC---------AGCA------CCAGCAGCAGCTGCAACACCAG-----------------CAGCAA---------------CAACAGC------AACACCAGC-------------------------------------------AACTACA---------ACAG------------------CAAC----------------------------------------------AG----------CAACA---CC------ACCAG------CAGCAGC----------A------GCAGCAA------CACC--------------------ATCAACAGC----AGCAGCAACAGCAC------------------------------CAGCAG---------------------------------------------------------------CAAC---AGGAATCGGAT--GTTATAC--CCATT
droKik1 scf7180000302469:600617-600814 + CTTGAACC-----AGCAA-------------------------------------------------------------------------CA-----------GTCG-----------CATCAT----------------------------------------------------------------------------------------------------------------------------------GCCTATCAGCA---AC---------AGCA------CAATTTGTATGCCCAGCAGCAG-----------------CAGCAA---------------CATCAGC------AACATCAGC-------------------------------------------AGCAGCA---------GCAG------------------CATC----------------------------------------------ACT----------TTCA---TC------ACCAG------CAACAGC----------A------ACAGCAG------CAGC--------------------------AAC----AT------------C------------ACTC-----------------------------GCTTCATC---ATGGCCATC------ATGAC-A-----AT---------AG-----CAACATGTCGTTGCC--TTCGCCA--ACGGC
droFic1 scf7180000453807:608620-608823 + CCACGCAC-----AAGACCTG----------------------------------------------CCA---------------------CG-----------CCCA-----------C------AATGCCAGCA---------------------------------GGACCAG------------------------------------------------------CAACTGGA---ACGCCCACTACTC-----CAC------AGC------------------------------------AG--------------------CAACA---------ACAAC---------------------AGC---------ACCTG--CAAC----A----G---------------------------------------------------CAAC----------------------------------------------AT----------CCACA---AC------ACCAG------CAACAGC----------A------GCAGCAA------CATC---AACAGCATATGT-----TG---------CA-------------------------------CA------------CGCACCC--------GCATCCGC---ATAGCCAGC---------------------------ATT-CGCATT---CGCATCCGCA---TCCGCAC--AC--G
droEle1 scf7180000491193:4156371-4156567 - CCAACTCG------CGTT------------------------------------------CGTCCCTCCAGCAG--------------CAGCA-----------ACAG-----------CAAC----------------------------------------------------------------------------------------------------------------------------------------AACAGCA---AC---------ATCA------ACAACAGCAC---CCACAAAAGCA--G------------CAGCAA---------------CATCAGC------AGCAGCAGC-------------------------------------------AACAGCA------------G------------------CAGC-------------------------------AA---------CGTCAGC-------------------------CGCAG------CAAC----------------------AGCAG------CCG------------C------------------------------------------------ATCAGGCGCAACAGCAGCAGCAGAATCATTA--CCAT-------------------------------------------------CAGC---AGGCCAAGCATCCGTCGCCC--AC--G
droRho1 scf7180000779263:6910-7131 + GTAATAAC-----AACAA-------------------------------------------------------------------------CA-----------ATCA-----------CAATCCGAGCTT---ACAACTGAATGGTAA---------------------------------------------------------------------------------TGCCAGCAGCAACACT-------AGGCAACAC------AGCAG------------------------------CAACACCAG--CAGCGGCAGCAACAGC---------------AGTAAC--------------------------------------TCC----AGCAA-----CATTAGCCC-----TC----CCATC-----------AGCATCAG---CAAC----------------------------------------------AG----------CAACA---AT------AATCA------CAACAG----------------------------------------------CAGCAGCAA-----CATC----AT------------C------------AGCG---------------------------GC--------TTTTG---CAGCACCATTTGGCGTTCG-----------------------------GCCACAT--TTGGCA--------
droBia1 scf7180000301754:622153-622352 - TCACTTTG------AGTC------------------------------------------CAACCCGGCAGCAGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTATCAGCA---GC---------ATCAACTGATCAGTCAGTAT---CAGCAACAG--CAG------------CAGCAA---------------CAACAAC------AACAGCAGCAGCAACAAC-----AACAA-----------------------------CA----ACAAC-----------AGCAGCAG---C-------------------------------------------------AG-------------------------------------C---AG-------------------CAACAA------CAG---CAACAGCCACAGCAGCAA-----CAAC----AT------------C------------ATCTTGCCCAACAGCAGCAGC----------------------------------------------------------------ACATG---AGGAGTCACA-----------------
droTak1 scf7180000413017:347122-347333 - CCAGCAGC-----ACATG-------------------------------------------------------------------------CAACAGTTTAT-----G-----------CAC---------------------------------------------------C------------------------------------------------------------------AGCAG----------ATGATAC------AGCGA------------------------------CAACAG-----------------------------CAGCAGCAGC---------------------AGC---------ACATG--CAAC----A----G---------------------------------------------------CAACAACTTCATGGCCAGGCGCAACAATTGACGA-CAGCTCAGCAAC-------------------------------ACCAAATGCAGC---AG-------------------CAGCAA------CAG------------CATC-----AGGCTCAGC----AG------------C------------A---------------CCATCAAGCTCAGCA--GCAA---------CA---------CC----------------------AAGCTCAGC---AGC---A--AC--ATCAAAC--ACAAC
droEug1 scf7180000409474:1058892-1059115 - GCATCTGCAGCGCATGAATAG------CTTTGGTCAGGATGGACAATTTCACTTTGAGTCCAATCCGGCAGCTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTATCAGCA---GC---------ATCAACTGATTAGCCAGTAT---CAGCAGCAA-----------------CAGCAA---------------CAACAGC------AACAGCAGC-------------------------------------------AACAGCA---------ACAG------------------CAAC----------------------------------------------AA----------CCTCA---GC------AGCAG------CAA-------------------------CAG--------------------------------------C----AC------------C------------ATCTAGCCCAACAGCAGCAGC----------------------------------------------------------------TCATG---AGGAGTCACAC--GCCCCAGAGTCCAC
dm3 chr2R:5659657-5659856 - GTCATGCT-----AATGA-------------------------------------------------------------------------CA-----------ACGA-----------CATCG-----------------------------------GGCAGTGCGC--TGC------------------------------------------------------------TGAA---AT----------ACGCACCGCAAC---AGC-----------------------------------------------------------AACAACTGCAGCAGCAGC---------------------AGC--------------AATTATCGACA----G------------------C---------------------------------AACACTCCCG-----------------------C---------------GA-------------CA---A---CATCATCAGATGCAGC---TG-------------------CAGCAG------CAG------------CAGC------------------------------AGCAACTGCAACAGAA-C----------TTCG--------------------------------TGGC---------------------------TGTGCCCAGCAGCATGCTGCGAAT--GCCGCTC--ACAGT
droSim2 3r:19811029-19811220 - CTTGTGCC-----TCCTC---------------------------------------------------GGCTCCTTCCC-----------------TTTATGCGCCA-----------CA--------------------AATGAAAATGCAGACA--GACAACGGG-------------------------------------------------------------------------------------C-GCCAGC------------------------------------------CGACGACAG-----------------CAGCAG---CAGCAAAAGCAGCAACAG--------------------------------CAAC----A----GCAGC---------AACAGCA---------AC----------------------------------------------------------------------AG---------C----------------AACAG------C---AGCAACAGCAGCA-------G---CAACATCGGCAGCAACGACAGCCAC------------------------------------------------------------------GTC--------------------------------------TGACGA----------------------------TGACGTCGCAT--TT-----------C
droSec2 scaffold_8:2716454-2716704 - GCAACAGC-----AGCAG-------------------------------------------------------------------------CA-----------ACACTATCACCACTACAGCGC------CAATA---------------------------------GCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCTAATGCCAACAACAACAACAACAAT-------ACGGCAAAC------AACAA------------------------------CAACACAAG--------------------------CAGCAACAAC--------------------------------------AACAC--------------------------------------------GACCAACACGAACGGCAGCA--------G-----------------------CAA---------CAACACG-------------------------AGCG------GCAAC----------------------AACAA------CAA------------C--------------AGC----------------AGC------------------GGCAACAACAGCAAC--------------------------------------------------------------ACGGAGC-----AGAACACA----CCGCCC--AC-GC
droYak3 2R:9421601-9421810 + GCAACAAC-----AACGG-------------------------------------------------------------------------CA-----------ATCA-----------CAATCCGAGCTT---ACAACTGAATGGTAA---------------------------------------------------------------------------------TGGTGGCAGCAACACG-------AGGCAACAC------AGCAG------------------------------CAG-----------------------CGGCA------G---------CAACAGC------------AGC--------------AGCAA---------------CATAAGCCC-----AC------------------------CCCCCAGCA--------G-----------------------CAG---------CAGCATAAGCAGCAAC----------------AACA---------ATAAT----------C------A---------------------------CAGCAGCAA-----CATC----AT------------C------------AGCG---------------------------GC--------TTCTG---CAGCACCATTTGGCGTTCG-----------------------------GCCACAT--TTGGCA--------
droEre2 scaffold_4845:12591575-12591761 - CAA-TAAC-----AACTA-------------------------------------------------------------------------CT-----------ACCA-----------CAGC---AATGCCAGCA-----------------AGCA--GGCAGCACAC--GCC------------------------------------------------------------AGCA---AC----------AT-----------------------------------------GTAT---CAACAGCAA-----------------CAGCAG---CAGCAGCAGCATCACCAG--------------------------------CAGC----A----GCAGC---------ATCAGCA---------TC----------------------------------------------------------------------AG---------C----------------AACA------GC---AGCAACATCTGCA-------G---CAGCATCTGCAGC--------------------------AGCAACA-------------------------------------------------------------------------------------------------------------CGCGCAGC---AGCCAACACAC--ATCACCT--ACCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCAACTCC-----AACTC-------------------------------------------------------------------------CA-----------ATCA-----------CTCCTCGAATGCCAGCAAATCAAATTTTCA----TGTG-----------------------------------------------------------------------------AACATCAAT----------A-----CAC------AGC---------------------------AGC--CAACAACAA-----------------CAACA------A---------CAATACCAACAGC------AA-----------------CTTC----A----G------------------CC------------A------------------CATC----------------------------------------------ATC----------A------T---CATCATCAGAAGCAGC---AG-------------------CAGCAG------CAG------------CAGC-----AGCATCATC----AT------------C------------ATC---------------ATC--------------------GTCGTCGTCATC---------------------------ATTGCCCATT---AGGCGTCACAT--TTCGCAC--ACGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................G------------------CC------------A------------------CATC----------------------------------------------ATC----------A------T---CATCATCAGA..................................................................................................................................................................................................................................2311.001100000
...............CTC-------------------------------------------------------------------------CA-----------ATCA-----------CTCCTCGAATGCCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCACAT--TTCGCAC--ACGAC2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................AATACCAACAGC------AA-----------------CTTC----A----G------------------CC------------A------------------CAT...................................................................................................................................................................................................................................................................................................................2611.001100000
.............AACTC-------------------------------------------------------------------------CA-----------ATCA-----------CTCCTCGAATGCCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATC---------------------------ATTGCCCATT---AGG........................2011.001100000
...................................................................................................................................................................................................................................................................CAC------AGC---------------------------AGC--CAACAACAA-----------------CAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............CTC-------------------------------------------------------------------------CA-----------ATCA-----------CTCCTCGAATGCCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................C------AGC---------------------------AGC--CAACAACAA-----------------CAACA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AG-------------------CAGCAG------CAG------------CAGC-----AGCA............................................................................................................................................................24200.102000020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----AGCATCATC----AT------------C------------ATC---------------ATC--------------------...............................................................................21200.051100000
droVir3
CTCCTCG-----------------------------------------------------------------------------------------------------------------------AATGCCAGCACATCCAGTTTCCA----CGTA-----------------------------------------------------------------------------CACATCAAT----------A-----CAC------AGCAA------------------------------CAA-----------------------CAGCAA---------------CAACAGC------AACAACAAC-----------------AAC----A----G-----------------ACA---------AC---------------------AGT-------------------------------CGCTTTAGACAC-------------------------------ACAAAATCCATC---AA-------------------CAACAA------CAG------------C--------------ATC----------------ATC------------ATCG---------------------------TC--------GT------CATC---------------------------ATTGCCCATC---AGACGTCACAT--CTCGCAC--ACGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------CAG------------C--------------ATC----------------ATC------------ATCG---------------------------TC--------GC------.......................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC---AGACGTCACAT--CTCGC.........2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACAACAAC-----------------AAC----A----G-----------------ACA---------AC---------------------AGT-------------------------------...................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................C------AACAACAAC-----------------AAC----A----G-----------------ACA---------AC---------------------AGT-------------------------------CGCT...............................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAT----------A-----CAC------AGCAA------------------------------CAA-----------------------CAGCAA---------------C............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................A-----------------------CAGCAA---------------CAACAGC------AACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................21200.153001000000000000000010000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AACAACAAC-----------------AAC----A----G-----------------ACA---------AC---------------------.....................................................................................................................................................................................................................................................................................................................1970.141000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................A-----------------------CAGCAA---------------CAACAGC------AACAACAAC-----------------A.....................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCAA------------------------------CAA-----------------------CAGCAA---------------CAACAGC------AA..............................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA------------------------------CAA-----------------------CAGCAA---------------CAACAGC------AAC.............................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................C------AGCAA------------------------------CAA-----------------------CAGCAA---------------CAA..........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GCAA---------------CAACAGC------AACAACAAC-----------------AAC----...............................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AC------AGCAA------------------------------CAA-----------------------CAGCAA---------------CAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
droGri2
CCAACAAC-----AACCA-------------------------------------------------------------------------CA-----------ACAA-----------CCAC----------------------------------------------------------------------------------------------------------------------------------------AACAACA---ACAGCAACAGCA--A------CAAACAGCAGGTGCAGCAACAA-----------------C---------------AATAACAGTCGCCCCTGA------AA-----------------------------------CATA-----TG------------------------------------CA--------G-----------------------C---------------AA----------CA------A---CATCATCAG------CAACAGC----------A------ACAGCAA------CTGC------------AA-----------CTGC----AT------------C------------------CGCAACATCCG--------------------------------CATC---------------------------ATTGCCCATT---AGGCGCCACAT--CTCGCAT--ACGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CTGC------------AA-----------CTGC----AT------------C------------------CGC...............................................................................................................1911.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAACAGC----------A------ACAGCAA------CTG.....................................................................................................................................................................................19200.05110
droWil2
CTATCGCC-----ACATC-CACACCGCCTGCAGTCATCGT---------------------------------------------------CG-----------ACGC-----------CGCC------------A-----------------GGA-----------------C------------------------------------------------------------TGCA---GC----------ATGCCCTGCAGCA---GC---------AG---------------------CAACAGCAT-----------------TTGCTACAGCAGCAACAGC---------------------AGC---------ACCTG--CAAC----A----GCAAC---------TACAGCA-----------------------------------------------------------------------------------------------------AC---AACAACA------GC---AGCAGCAGCAGCA-------TCAGCAG------CAGC------------AA-----------CATCATCA-------------------------------CG------------CTCACCC--------ACA---------------CC------------A-----AC---------CGCCCACA---CCGCGACCCAG--CTCGCCC--CCGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA------GC---AGCAGCAGCAGCA-------.....................................................................................................................................................................................................21200.35700070
....................................................................................................................................................................................................................................................................................................................................................................................................CAAC----A----GCAAC---------TACAGCA-----------------------------------------------------------------------------------------------------AC---...........................................................................................................................................................................................................................................1930.33100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------AC---AACAACA------GC---AGCAGCAGCAGCA-------.....................................................................................................................................................................................................25200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA-------TCAGCAG------CAGC------------A.......................................................................................................................................................................25150.07100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA-------TCAGCAG------CAGC------------........................................................................................................................................................................24180.06100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GC---AGCAGCAGCAGCA-------TCAGC................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----------------------------------------------------------------------------------------------------AC---AACAACA------GC---AGCAGCAGCA...............................................................................................................................................................................................................24200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------GC---AGCAGCAGCAGC.............................................................................................................................................................................................................21200.05100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------TCAGCAG------CAGC------------AA-----------C..........................................................................................................................................................19200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------GC---AGCAGCAGCAGC.............................................................................................................................................................................................................19200.05100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------------------------------------------------------------------AC---AACAACA------GC---AGCAGC...................................................................................................................................................................................................................19200.05101000
dp5
CCAACAGC-----AACAA-------------------------------------------------------------------------CA-----------ACAA-----------CAACAC------CAGCA---------------------------------ACACCAA----------------------------------------------------------------------------------------------C---------AACA------CCAACATCAGCTTCAACAACAG-----------------CATCAA---------------CAACACCAACAGC------AAC-------------------------------AGC---------AGCAGCAACAC---------CAACAAC-------------------------------------------------------------ACC-------------------------AACAG------CAGCAGC----------AACAGCAA------------CACC--------------------ACCAGCACC----AGCAACAGCTTCAT-------------------------------------------------------------------------------------------------------------------------CATCA--TCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................AACAG-----------------CATCAA---------------CAACACCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................C---------CAACAAC-------------------------------------------------------------ACC-------------------------AACAG------CAGCAG.......................................................................................................................................................................................................................2211.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................ACCAACAGC------AAC-------------------------------AGC---------AGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................2440.2510010000000
......GC-----AACAA-------------------------------------------------------------------------CA-----------ACAA-----------CAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
..AACAGC-----AACAA-------------------------------------------------------------------------CA-----------ACAA-----------CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CCATTTCG------CT-----------------------------------------------------------------------------------------------------------------------CAATCAAATATCAA----ACTACTCCCTAA-------------------------------------------------------------------GCCGCAGCAGCAGT-------TCGCACC--ATCATCACC---------AC---------------------CACCATCAG-----------------CCGCAG---------CAGCACCATCATC------------GTC---------ACAGT--CCCC----A----GCAAC---------TGCAGC----------------------------------------------------------------------------------CA-------------------CACC---ATCA------TC---ATCATCATCATCA-------CCAGCAG------CAGC------------AG-----------CAGCAGCA------------------------------------------------------------------------------------CTCTTCCTCCTCCCATCGTCTGTATT----------AT---------------CCA--GCGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGC----------------------------------------------------------------------------------CA-------------------CACC---ATCA------TC---ATCAT....................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCA-------CCAGCAG------CAGC------------AG-----------CAGC.......................................................................................................................................................2520.501010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------CCAGCAG------CAGC------------AG-----------CAGCAGCA------------------------------------------------------------------------------------...............................................................23200.051001000
droAna3
GCAACATC-----AGCTC-------------------------------------------------------------------------CT-----------CCCG-----------CAGCAC------CACTT---------------------------------GCAACAT------------------------------------------------------CACCTGCAACATC-------------------------------------------------------ACCACCACCAACAA-----------------CAACAA---CAA---------CAGCAGC------AGC---AAC--------------AACAAC----A----G------------------CA------------A------------------CATC-------------------------------AGCTTT---------TGC----------CACAACAA---CAACAACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------CAACAACATCATG-AC--------TTCCT---CAGCGCCGCTCTACT-----------------------ATC---CGCCCCCTCAT--CCCTCTC--CGGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................AA-----------------CAACAA---CAA---------CAGCAGC------AGC---..........................................................................................................................................................................................................................................................................................................................................................................................................21200.153030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----A..................................................................................................................................................2580.131000001
...................................................................................................................................................................................................................................................................................................................AACAA-----------------CAACAA---CAA---------CAGCAGC------A...............................................................................................................................................................................................................................................................................................................................................................................................................22200.102000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------C......................................................................................................21200.102020000
.....................................................................................................................................................................................................................................................................................................................CAA-----------------CAACAA---CAA---------CAGCAGC------................................................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----...................................................................................................................................................23100.101010000
..............................................................................................................................................................................................................................................................................................................................................................CAGCAGC------AGC---AAC--------------AACAAC----A----G------------------CA------------A------------------C.....................................................................................................................................................................................................................................................................................................................25100.101010000
...................................................................................................................................................................................................................................................................................................................................................AA---------CAGCAGC------AGC---AAC--------------AACAAC----...............................................................................................................................................................................................................................................................................................................................................................................21200.102020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------CA.....................................................................................................25140.071010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAACAACAG------CA----------------------A---CAGCAG---C.......................................................................................................................................................................................21140.071010000
...................................................................................................................................................................................................................................................................................................................................................AA---------CAGCAGC------AGC---AAC--------------AACAAC----A----G------------------C......................................................................................................................................................................................................................................................................................................................................................24160.061010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACAG------CA----------------------A---CAGC.............................................................................................................................................................................................19200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----...................................................................................................................................................21200.051100000
.............................................................................................................................................................................................................................................................................................................................................AA---CAA---------CAGCAGC------AGC---AAC--------------A........................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG------CA----------------------A---CAGCAG---CAG--------------------------C..........................................................................................................................................................20200.051001000
..................................................................................................................................................................................................................................................................................................................................................CAA---------CAGCAGC------AGC---AAC--------------AACAAC----A----..........................................................................................................................................................................................................................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................A---------CAGCAGC------AGC---AAC--------------AACAAC----...............................................................................................................................................................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................................................................................ACAA-----------------CAACAA---CAA---------CAGCAGC------AGC---..........................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
................................................................................................................................................................................................................................................................................................................................................................GCAGC------AGC---AAC--------------AACAAC----A----G------------------C......................................................................................................................................................................................................................................................................................................................................................20200.051000001
...............................................................................................................................................................................................................................................................................................................................................................AGCAGC------AGC---AAC--------------AACAAC----A----G------------------C......................................................................................................................................................................................................................................................................................................................................................21200.051000001
..............................................................................................................................................................................................................................................................................................................................................A---CAA---------CAGCAGC------AGC---AAC--------------A........................................................................................................................................................................................................................................................................................................................................................................................18200.051000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----A..................................................................................................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................................................CAA-----------------CAACAA---CAA---------CAGCAGC------AGC---A.........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
............................................................................................................................................................................................................................................................................................................................................CAA---CAA---------CAGCAGC------AGC---AAC--------------A........................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----AA---------CAA------------------------------CAACAACATCA............................................................................................19200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------C......................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................AACAA-----------------CAACAA---CAA---------CAGCAGC------AGC---..........................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAG--------------------------CAAC----AA---------CAA------------------------------CAACAAC................................................................................................22200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CA......................................................................................................................................19200.051100000
...........................................................................................................................................................................................................................................................................................................................................ACAA---CAA---------CAGCAGC------AGC---AAC--------------A........................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................................AACAA---CAA---------CAGCAGC------AGC---AA........................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
...................................................................................................................................................................................................................................................................................................................AACAA-----------------CAACAA---CAA---------CAGCAGC------................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------A---CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------CA.....................................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAG--------------------------CAAC----AA---------CAA------------------------------CAACA..................................................................................................23200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------CA----------------------A---CAGCAG---CAG--------------------------CAAC----...................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................GC------AGC---AAC--------------AACAAC----A----G------------------CA------------.........................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
AA--CAGC-----AACCG-------------------------------------------------CCACCGCCTTCCCAACAGCAGCAGCA-----------ATTG-----------CATC---------------------------------------------------------------------------------------------------------------------AGCTCA-------AGTCACCGC------AAC---------AGCA------CCAGCAGCAGCTGCAACACCAG-----------------CAGCAA---------------CAACAGC------AACACCAGC-------------------------------------------AACTACA---------ACAG------------------CAAC----------------------------------------------AG----------CAACA---CC------ACCAG------CAGCAGC----------A------GCAGCAA------CACC--------------------ATCAACAGC----AGCAGCAACAGCAC------------------------------CAGCAG---------------------------------------------------------------CAAC---AGGAATCGGAT--GTTATAC--CCATTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTGAACC-----AGCAA-------------------------------------------------------------------------CA-----------GTCG-----------CATCAT----------------------------------------------------------------------------------------------------------------------------------GCCTATCAGCA---AC---------AGCA------CAATTTGTATGCCCAGCAGCAG-----------------CAGCAA---------------CATCAGC------AACATCAGC-------------------------------------------AGCAGCA---------GCAG------------------CATC----------------------------------------------ACT----------TTCA---TC------ACCAG------CAACAGC----------A------ACAGCAG------CAGC--------------------------AAC----AT------------C------------ACTC-----------------------------GCTTCATC---ATGGCCATC------ATGAC-A-----AT---------AG-----CAACATGTCGTTGCC--TTCGCCA--ACGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CCACGCAC-----AAGACCTG----------------------------------------------CCA---------------------CG-----------CCCA-----------C------AATGCCAGCA---------------------------------GGACCAG------------------------------------------------------CAACTGGA---ACGCCCACTACTC-----CAC------AGC------------------------------------AG--------------------CAACA---------ACAAC---------------------AGC---------ACCTG--CAAC----A----G---------------------------------------------------CAAC----------------------------------------------AT----------CCACA---AC------ACCAG------CAACAGC----------A------GCAGCAA------CATC---AACAGCATATGT-----TG---------CA-------------------------------CA------------CGCACCC--------GCATCCGC---ATAGCCAGC---------------------------ATT-CGCATT---CGCATCCGCA---TCCGCAC--AC--GSizeHit CountTotal NormTotal
No Reads
droEle1
CCAACTCG------CGTT------------------------------------------CGTCCCTCCAGCAG--------------CAGCA-----------ACAG-----------CAAC----------------------------------------------------------------------------------------------------------------------------------------AACAGCA---AC---------ATCA------ACAACAGCAC---CCACAAAAGCA--G------------CAGCAA---------------CATCAGC------AGCAGCAGC-------------------------------------------AACAGCA------------G------------------CAGC-------------------------------AA---------CGTCAGC-------------------------CGCAG------CAAC----------------------AGCAG------CCG------------C------------------------------------------------ATCAGGCGCAACAGCAGCAGCAGAATCATTA--CCAT-------------------------------------------------CAGC---AGGCCAAGCATCCGTCGCCC--AC--GSizeHit CountTotal NormTotal
No Reads
droRho1
GTAATAAC-----AACAA-------------------------------------------------------------------------CA-----------ATCA-----------CAATCCGAGCTT---ACAACTGAATGGTAA---------------------------------------------------------------------------------TGCCAGCAGCAACACT-------AGGCAACAC------AGCAG------------------------------CAACACCAG--CAGCGGCAGCAACAGC---------------AGTAAC--------------------------------------TCC----AGCAA-----CATTAGCCC-----TC----CCATC-----------AGCATCAG---CAAC----------------------------------------------AG----------CAACA---AT------AATCA------CAACAG----------------------------------------------CAGCAGCAA-----CATC----AT------------C------------AGCG---------------------------GC--------TTTTG---CAGCACCATTTGGCGTTCG-----------------------------GCCACAT--TTGGCA--------SizeHit CountTotal NormTotal
No Reads
droBia1
TCACTTTG------AGTC------------------------------------------CAACCCGGCAGCAGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTATCAGCA---GC---------ATCAACTGATCAGTCAGTAT---CAGCAACAG--CAG------------CAGCAA---------------CAACAAC------AACAGCAGCAGCAACAAC-----AACAA-----------------------------CA----ACAAC-----------AGCAGCAG---C-------------------------------------------------AG-------------------------------------C---AG-------------------CAACAA------CAG---CAACAGCCACAGCAGCAA-----CAAC----AT------------C------------ATCTTGCCCAACAGCAGCAGC----------------------------------------------------------------ACATG---AGGAGTCACA-----------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCAGCAGC-----ACATG-------------------------------------------------------------------------CAACAGTTTAT-----G-----------CAC---------------------------------------------------C------------------------------------------------------------------AGCAG----------ATGATAC------AGCGA------------------------------CAACAG-----------------------------CAGCAGCAGC---------------------AGC---------ACATG--CAAC----A----G---------------------------------------------------CAACAACTTCATGGCCAGGCGCAACAATTGACGA-CAGCTCAGCAAC-------------------------------ACCAAATGCAGC---AG-------------------CAGCAA------CAG------------CATC-----AGGCTCAGC----AG------------C------------A---------------CCATCAAGCTCAGCA--GCAA---------CA---------CC----------------------AAGCTCAGC---AGC---A--AC--ATCAAAC--ACAACSizeHit CountTotal NormTotal
No Reads
droEug1
GCATCTGCAGCGCATGAATAG------CTTTGGTCAGGATGGACAATTTCACTTTGAGTCCAATCCGGCAGCTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTATCAGCA---GC---------ATCAACTGATTAGCCAGTAT---CAGCAGCAA-----------------CAGCAA---------------CAACAGC------AACAGCAGC-------------------------------------------AACAGCA---------ACAG------------------CAAC----------------------------------------------AA----------CCTCA---GC------AGCAG------CAA-------------------------CAG--------------------------------------C----AC------------C------------ATCTAGCCCAACAGCAGCAGC----------------------------------------------------------------TCATG---AGGAGTCACAC--GCCCCAGAGTCCACSizeHit CountTotal NormTotal
No Reads
dm3
GTCATGCT-----AATGA-------------------------------------------------------------------------CA-----------ACGA-----------CATCG-----------------------------------GGCAGTGCGC--TGC------------------------------------------------------------TGAA---AT----------ACGCACCGCAAC---AGC-----------------------------------------------------------AACAACTGCAGCAGCAGC---------------------AGC--------------AATTATCGACA----G------------------C---------------------------------AACACTCCCG-----------------------C---------------GA-------------CA---A---CATCATCAGATGCAGC---TG-------------------CAGCAG------CAG------------CAGC------------------------------AGCAACTGCAACAGAA-C----------TTCG--------------------------------TGGC---------------------------TGTGCCCAGCAGCATGCTGCGAAT--GCCGCTC--ACAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...ATGCT-----AATGA-------------------------------------------------------------------------CA-----------ACGA-----------CAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACCGCAAC---AGC-----------------------------------------------------------AACAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGCACCGCAAC---AGC-----------------------------------------------------------AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AAC---AGC-----------------------------------------------------------AACAACTGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................C-----------------------------------------------------------AACAACTGCAGCAGCAGC---------------------AGC--------------A........................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAG------------CAGC------------------------------AGCAACTGCAA............................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAG------------CAGC------------------------------AGCAACTGCAA............................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------CAG------------CAGC------------------------------AGCAAC.................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------CAG------------CAGC------------------------------AGCAACT................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
CTTGTGCC-----TCCTC---------------------------------------------------GGCTCCTTCCC-----------------TTTATGCGCCA-----------CA--------------------AATGAAAATGCAGACA--GACAACGGG-------------------------------------------------------------------------------------C-GCCAGC------------------------------------------CGACGACAG-----------------CAGCAG---CAGCAAAAGCAGCAACAG--------------------------------CAAC----A----GCAGC---------AACAGCA---------AC----------------------------------------------------------------------AG---------C----------------AACAG------C---AGCAACAGCAGCA-------G---CAACATCGGCAGCAACGACAGCCAC------------------------------------------------------------------GTC--------------------------------------TGACGA----------------------------TGACGTCGCAT--TT-----------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCAACAGC-----AGCAG-------------------------------------------------------------------------CA-----------ACACTATCACCACTACAGCGC------CAATA---------------------------------GCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCTAATGCCAACAACAACAACAACAAT-------ACGGCAAAC------AACAA------------------------------CAACACAAG--------------------------CAGCAACAAC--------------------------------------AACAC--------------------------------------------GACCAACACGAACGGCAGCA--------G-----------------------CAA---------CAACACG-------------------------AGCG------GCAAC----------------------AACAA------CAA------------C--------------AGC----------------AGC------------------GGCAACAACAGCAAC--------------------------------------------------------------ACGGAGC-----AGAACACA----CCGCCC--AC-GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------CAA------------C--------------AGC----------------AGC------------------GGC...............................................................................................................1880.1310010
droYak3
GCAACAAC-----AACGG-------------------------------------------------------------------------CA-----------ATCA-----------CAATCCGAGCTT---ACAACTGAATGGTAA---------------------------------------------------------------------------------TGGTGGCAGCAACACG-------AGGCAACAC------AGCAG------------------------------CAG-----------------------CGGCA------G---------CAACAGC------------AGC--------------AGCAA---------------CATAAGCCC-----AC------------------------CCCCCAGCA--------G-----------------------CAG---------CAGCATAAGCAGCAAC----------------AACA---------ATAAT----------C------A---------------------------CAGCAGCAA-----CATC----AT------------C------------AGCG---------------------------GC--------TTCTG---CAGCACCATTTGGCGTTCG-----------------------------GCCACAT--TTGGCA--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CATC----AT------------C------------AGCG---------------------------GC--------TTCTG---CAGC...................................................................2311.00100010000000
...........................................................................................CA-----------ATCA-----------CAATCCGAGCTT---ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
CAA-TAAC-----AACTA-------------------------------------------------------------------------CT-----------ACCA-----------CAGC---AATGCCAGCA-----------------AGCA--GGCAGCACAC--GCC------------------------------------------------------------AGCA---AC----------AT-----------------------------------------GTAT---CAACAGCAA-----------------CAGCAG---CAGCAGCAGCATCACCAG--------------------------------CAGC----A----GCAGC---------ATCAGCA---------TC----------------------------------------------------------------------AG---------C----------------AACA------GC---AGCAACATCTGCA-------G---CAGCATCTGCAGC--------------------------AGCAACA-------------------------------------------------------------------------------------------------------------CGCGCAGC---AGCCAACACAC--ATCACCT--ACCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................GTAT---CAACAGCAA-----------------CAGCAG---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTGCAGC--------------------------AGCAACA-------------------------------------------------------------------------------------------------------------CGCGCA................................2511.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTGCAGC--------------------------AGCAACA-------------------------------------------------------------------------------------------------------------CGCGCAGC---...........................2711.0010100000
..........................................................................................................................................................................................................................................................................................................AT---CAACAGCAA-----------------CAGCAG---CAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1711000000
...................................................................................................................................................................................................................................................................................................................AGCAA-----------------CAGCAG---CAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530003000
....................................................................................................................................................................................................................................................................................................................................................GCAGCAGCATCACCAG--------------------------------CAGC----A----..........................................................................................................................................................................................................................................................................................................................................................................2170.1410000010
........................................................................................................................................................................................................................................................................................................................................................CAGCATCACCAG--------------------------------CAGC----A----GCAGC---------............................................................................................................................................................................................................................................................................................................................................................2280.1310000100
.................................................................................................................................................................................................................................................................................................................................................................CAG--------------------------------CAGC----A----GCAGC---------ATCAGCA---------............................................................................................................................................................................................................................................................................................................................................20200.1022000000
.........................................................................................................................................................................................................................................................................................................................................................AGCATCACCAG--------------------------------CAGC----A----GCAGG---------............................................................................................................................................................................................................................................................................................................................................................21170.0610000100
...................................................................................................................................................................................................................................................................................................................AGCAA-----------------CAGCAG---CAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................................................GC----A----GCAGC---------ATCAGCA---------TC----------------------------------------------------------------------AG---------C----------------A.......................................................................................................................................................................................................................................21200.0510000100
.................................................................................................................................................................................................................................................................................................................ACAGCAA-----------------CAGCAG---CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
............................................................................................................................................................................................................................................................................................................................................................ATCACCAG--------------------------------CAGC----A----GCAGC---------............................................................................................................................................................................................................................................................................................................................................................18200.0510100000
.....................................................................................................................................................................................................................................................................................................................................................................................................AGC----A----GCAGC---------ATCAGCA---------TC----------------------------------------------------------------------AG---------C----------------........................................................................................................................................................................................................................................21200.0510010000
..................................................................................................................................................................................................................................................................................................................CAGCAA-----------------CAGCAG---CAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................................................GC----A----GCAGC---------ATCAGCA---------TC----------------------------------------------------------------------AG---------C----------------........................................................................................................................................................................................................................................20200.0511000000

Generated: 05/17/2015 at 10:58 PM