ID:

dmo_762

 Coordinate:

scaffold_6473:12750913-12751063 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.9 -23.8 -23.8

Flybase annnotation

CDS [Dmoj\GI14763-cds]; exon [dmoj_GLEANR_15555:1]; intron [Dmoj\GI14763-in]

Repeatable elements

NameClassFamilyStrand
(CAT)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6328:1406636-1406653 +
  2. scaffold_6359:3710039-3710056 -
  3. dmo_762  scaffold_6473:12750992-12751009 -
  4. scaffold_6496:6722437-6722454 -
  5. scaffold_6496:14110461-14110478 +
  6. scaffold_6496:18660625-18660642 +
  7. scaffold_6680:1418623-1418640 +
  8. scaffold_6680:9209187-9209204 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCTGGTAATGATGATGATGATGTCGCTAATAGCACACGGAAATTGTCACGGTGAGTTCCTTATCACCATATTATGTTGATGATGTCGATGATGATGATGATGATGATGATGATAATGTTGATTTGGGAAAATGCTTTTATAAGAAATGCAAAGTGCAGATTGCAGCGAATTACTTATAGATATTGAAAAGTAATTTATAGTTATACCATAGATACAATTATTTTAAGAGATTTCAGATCTACAGTGCAGCT
**************************************************......((.((((((.((((((((((((((...)))))).))))).))).)))))).)).......(((((((((......(((((((....)))).))).....)))))..))))(((((((((............))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
 M060
embryo
 V049
head
........................................................................................................GATGATGATAATGTTGAT................................................................................................................................. 18 0 8 4.38 35 16 17 1 0 1
.......................................................................................................TGATGATGATAATGTTGAT................................................................................................................................. 19 0 7 2.86 20 14 6 0 0 0
......................................................................................................CTGATGATGATAATGTTGAT................................................................................................................................. 20 1 17 2.00 34 24 9 1 0 0
........................................................................................................GATGATGATAATGTTGATA................................................................................................................................ 19 1 18 1.50 27 18 9 0 0 0
........................................................................................................GATGATGATAATGTTGGT................................................................................................................................. 18 1 20 0.60 12 3 8 1 0 0
.......................................................................................................TGATGATGATAATGTTGATA................................................................................................................................ 20 1 13 0.54 7 3 4 0 0 0
...................................................................................................................................................................................................................ATACAATTATCGTAAGGGATT................... 21 3 3 0.33 1 0 0 1 0 0
......................................................................................................CTGATGATGATATTGTTGATT................................................................................................................................ 21 2 3 0.33 1 0 0 1 0 0
......................................................................................................CTGATGATGATAATGTTGA.................................................................................................................................. 19 1 20 0.20 4 3 1 0 0 0
.....................................................................ATTATTTAAATGATGTCGATG................................................................................................................................................................. 21 3 20 0.20 4 1 0 3 0 0
........................................................................................................................ATTTGGTAAAATGCTTTTTT............................................................................................................... 20 2 12 0.17 2 0 0 0 2 0
........................................................................................................GATGATGATAATGTTGA.................................................................................................................................. 17 0 8 0.13 1 0 0 1 0 0
.........................................................................................................................TTTGGGAAAATGCTTTTT................................................................................................................ 18 1 8 0.13 1 0 0 0 1 0
...........................................................................................TGATGATGATGATGATGAT............................................................................................................................................. 19 0 20 0.10 2 0 0 2 0 0
......................................................................................................CTGATGATGATAATGTTG................................................................................................................................... 18 1 20 0.10 2 0 2 0 0 0
........................................................................................................GATGATGATAATGTTGATC................................................................................................................................ 19 1 13 0.08 1 0 0 0 0 1
.......................................................................................................TGATGATGATAATGTTGATATTG............................................................................................................................. 23 2 18 0.06 1 0 1 0 0 0
......................................................................................................CTGATGATGATAATGTTTAT................................................................................................................................. 20 2 20 0.05 1 1 0 0 0 0
.......................................................................................................CGATGATGATAATGTTGAT................................................................................................................................. 19 1 20 0.05 1 0 1 0 0 0
.......................................................................................................TGATGATGATAATGTTGATATT.............................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GGACCATTACTACTACTACTACAGCGATTATCGTGTGCCTTTAACAGTGCCACTCAAGGAATAGTGGTATAATACAACTACTACAGCTACTACTACTACTACTACTACTACTATTACAACTAAACCCTTTTACGAAAATATTCTTTACGTTTCACGTCTAACGTCGCTTAATGAATATCTATAACTTTTCATTAAATATCAATATGGTATCTATGTTAATAAAATTCTCTAAAGTCTAGATGTCACGTCGA
**************************************************......((.((((((.((((((((((((((...)))))).))))).))).)))))).)).......(((((((((......(((((((....)))).))).....)))))..))))(((((((((............))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
.......................................................................................................ACTACTACTATTACAACTA................................................................................................................................. 19 0 7 0.14 1 1 0
...................................................................................CAGCTACTACTACTACTAC..................................................................................................................................................... 19 0 7 0.14 1 1 0
.......................................................AAGGAATAGTGGTGTCATG................................................................................................................................................................................. 19 3 9 0.11 1 0 1
.......................................................................................................ACTACTACTATTACAACTAT................................................................................................................................ 20 1 13 0.08 1 1 0
............................................................................................CTACTACTACTACTACTACTATTA....................................................................................................................................... 24 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:12750863-12751113 - dmo_762 CCTG-GTAATGATGATGA---------------------------------TG---------------------A-TGTCGCT--AAT--AGC-------------------------------------------ACACGGAA-ATTGTCACGGTGAGTTCCTT-ATCA-----CCAT----ATTATGTTGATGATGTCGA---TGATGATGATGATGATGATGATGATAAT------------GT---------------TGAT--------------------------------------------------TTGGGAAAAT------GCTTTTATAAGAAATGCAAAGTGCAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGAATTACTTATAGATATTGAAAAGTAA-TTTATAGTTATACCATAGAT---------------------------------------------ACAATTATTTT----AAGA-------------------------------GA----------------------TT---TCAGATCTACAGTGCA--GCT
droVir3 scaffold_12970:1389306-1389483 - TTATAA---TCATAATCA---------------------------------TA---------------CTTA---------------T--AAT-----------------------------------------------------------------------------------------------------------------AA------TGATAGTCACAATGACAATGA------T---AATGATAATTAATTTTTTTAA--------------------------------------------------TTATAAGTAT------TTTATTAAGTCAAAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCCGATTAATCAAATATTTGTAAATGTTTAATTTTTTTACTTTTATATAATTCTCTT----CAAA-------------------------------TA----------------------TT---TTAGAACTA----------CA
droGri2 scaffold_15081:1074800-1075034 - ATGGC--------------------------------------------------------GATG----------------------------------------------------------------------------------------------------------------------------------ACGA---CACCGAGGATGATGACGATAATGATGACAAAGA------T---GG---CCAGCA----------------------------ATAAGTTGGCACCAAATGATTTGGATGCAAGCTTAAGATGCTAAACAG--------------------------------------------ATCATGTTCCTC--------------TCACTAAGAATCAATCATATGTATATACATATATATATATATATCTATATCT-------------------------------------------------------------------------------------------------------------------------------------ATATAT-----------------------------------------------------AT---------------------------------------------ATATATATATCTGTATAAG---TGGGACTAAA--------------------------------ATGAAGACTAGT---TTAGTTCGGAGTTGGA--GAT
droWil2 scf2_1100000004768:772330-772493 + TGATGA---TGATGATGT---------------------------------TG---------------------A------------T--GATGACTACAAC-----------------------------------------A-A---CGACGACGAGCGGGCT-ATGA-----TGATGAATATGATGATGATGATGATGA---TG------ATGACGATGATGATGATAATGA------TGATGGGG------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGAAATGTCAGAAA-------------------------TGGACTGTTGAAAGTTGAAGAGATTTGTTTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG
dp5 Unknown_singleton_3797:536-733 - ACAAAA---TTTTGTCGA---------------------------------TT---------------------T-TTT---CGA--T--AGT---------GGTGGGGGAATTTTTTGCTTTTTTTGTTGATAGTGATGACAACATTTTTTCGATTTTTTCAATA----GTGGTGTGTG--------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TTTT-GCTTTTTTTTTTTTGATAGTGATGACAAAATT----------------------------------------------------------------------------------------------------G-TATA----------------------------------------------------------------GATTTTTT----CGATAGTGATGGGTGAA--------------------------------TTTTAAGCAATTTTTTTTTGATAG----------TG
droPer2 scaffold_8777:454-598 - TTATCA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--GCT---------------------------------------------------------------------------GC-----TGGTGT---------------------------------CTATGCTGCTGATGTCGCT------------GC---------------TGCC--------------------------------------------------TTGGGTCGCTG--CAG--------------------------------------------TTATTGTCGCTG--------------GCACAG-----------TGGGCACACACAAACCAATTTATTTATCTATTTTT-------------------------------------------------------------------------------------------------------------------------------------TCACAG-----------------------------------------------------CT---------------------------------------------ACAGTTCTT-----------------------------------------------------------------------------------------TT
droAna3 scaffold_13099:1926548-1926684 - TGATGT---TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGA---AGATAA------TGAAGAAGATGAAAATGATGA------TAATATTGAAAAGTATTTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTA--------------------------------------------------------------------TGTATACATTCTTCATAGTGAATTCAAAATG---------TT-------------------------------------GAAAATA-----------------------------------------AGTAT-TTTGTACAAAATGCATAGAC------------------------------------------------------------------------------------------------------------------------------------------GC--GAT
droBip1 scf7180000395973:452968-453090 - TAATAA---TAATCGCGT---------------------------------AT---------------------A------------T--G------------------------------------GTTGGCATTAAAAACAA-ATTGTTATGACGGCCTCATCA----GATGTACATGATTATCATCATTATGATGATAA---TAA------TGATGATCATGATGATGATCA------TGATGTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302355:104319-104464 + TGGCGA---TAATGACGG---------------------------------CA-----------------------------------------------------------CAT---------------------------AA-ACAGCCACGATGA-----------------TGATGATGATGATGATGATGATGATGA---TG------ATGATGATGATGATGATGATGA------TGATGGGGAACCGGAGCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATACAAACAA-------------------------TATACAGT--------ACAGAGAACGAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG
droFic1 scf7180000450461:880-1003 + ATTA-GTGATGATGATGA---------------------------------TG---------------------A-TGATGTT--GAT--GGTGATGATGAT----------------------------------------CG-ATGGTGATGATGG-----T------GATGATGATGATGATGATGGTGATGATGGTGA---TG------ATGGTGATGATGATGATGGTGA------TGATGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT
droEle1 scf7180000490247:12494-12734 + GATG-ATGATGATGATGA---------------------------------TG---------------------A-TGATGAT--GAT--GATGATGATGAT-----------------------------------------G-ATGATGATGATGA-----T------GATGATGATGATGATGACGATGATGATGATGA---TA------ATGACGATGACGATGATGATGA------CGATGAT-------------------------------------------GATGACAACTTA-------------TTAGAAAA---------------------------------------------------------------------------------------------------------------------------------------AACGCAATGCCC------------------TAACAGTAAATTCTCCTTCAAAATTTCGTCAT-------------------------------------------------------------------------------------------------AAAAAGAAA-TTAAGATTAATGAATGAAAT---------------------------------------------TCCAATGCTTA----AAAA-------------------------------AA----------------------CT-----CTAACTC----------TA
droRho1 scf7180000777379:5397-5584 + TGAAGA---TGTTGTTAT---------------------------------TG---------------------A------------TATAAC---------------AATAAGCA---------------------------------------------AA-----AA-----TGGAATTTCTGATGT------------------------TGA------------------------------------GAGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATA----------------------AAAAGGTTAA---TGA-----------------------------------------------------AAAATTAAGAATTATAAACAGTGAAACAGACATTGAAAATA-----------------------------------------AGCA----A---------------------------------------------------------------AC-------------------------ACAATTTGAAACTATTCTTTATGTTTATAATCATAAAACTAAACATAATACCACAGGCAG----------AA
droBia1 scf7180000302386:102948-103112 - TAATGG---TGTTTCTAA---------------------------------AG---------------TTGATTATTTC---TTA--T--AGC---------TGCAAGGGTATACA---------------------------------------------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGCTTGCCGAAGTTAACTT------------------------------------------------------------------------------------------------AGGCAATTATTATTAGGC------------------------------------------------AATAATTTTACCACTTATGAATAGTG-------------------------CTTAG-----------------------------------------------------TT---------------------------------------------ATAG-----------------------------------CTAATTTTTGGGTTTTTGGT--------------------ATAA---ATCAGTAAA--AGA
droTak1 scf7180000414937:15182-15366 + TTCTTA---TCAATTGAA-------------------------------CACT---------------------T-TGTTTCT--GTT--GCCA------------------------------------------------------------GTGAGCTCGTC-ATT-----------------A---------------------------AAAAGATTGTGTCGGTGAAAG------T----------------------------------------------------------------------------AGCTT----------------------------------------------------CATTATTTTCAAGAGATATAATATGACATGTGT-----------CAGTGATATA-------------------------------------------------------------------------------------------------------------------------------------------AGGATA--------------------------------------------ATAAAGTAG-CTTA--------------------------------------------------TATACCCTTGCAG-ATCATTCT----ATTA-------------------------------AT----------------------TT---ACAAATCGG---CAAAATGTT
droEug1 scf7180000409797:38465-38638 + AACAGC---ACACAGAGACAACTTTCACATTTTACGAGTTTTATATGAGCCCTCAGTGCCCGTTG--------------------------AC--------------------------------------------------------------------------------------------------GATGACGA---TGATG------ATGAGGACGCTAAATACAATGA------TGGTATTT-------------TCACTTGAGAGTTTTACGAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGCGCTACAAAT-------------------------------------TA-----CACGAT-------------------------------AAATAGAAAATTATGA--------------------------------------------------------------------------------------------------------------------------------------------------C----------TA
dm3 chrX:1040042-1040186 + ATGAG--------------------------------------------------------GATGACGTCGA---------------T--GAA-----------------------------------------------------------------------------------TACGATGATTA---------------------------CTCCGAAAGTGATGACGAAGA------T---------------------GGC--------------------------------------------------CCGGGAGA---------------------------------------------------------------------------------------------------------------------------------------CATGCAACTGTA------------------TAAT-GCTAATTTTATATAAACACTTATCAATAAAGTGTATTACAGTT-------------------------------------TAA----------------------------------------------------------------TATAGCC---------------------------------------------ACTTCTTT------------------------------------------------------------------------------TT----------TA
droSim2 3l:22415967-22416030 + TATA-ATAATAATTATAA---------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------A---TAA------TTATAATAATAATAATAATTA------TAATGTTGGTAAGTGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droSec2 scaffold_29:105041-105094 + ATTAT--------------------------------------------------------GATG----------------------------------------------------------------------------------------------------------------------------------CTGA---AGATTA------TGATGCTGGCGAGGATGATGATGACTAC---GG---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------CT
droYak3 X:907265-907418 + CTTC-ATCACGA-GACGA---------------------------------TG---------------------A-A----------------------------------------------------------------------------------------------------------------ATGGCGATGGCGA---TGA------TGATGATAATGATGATGATGA------TGATGCGAGAAAGCAGCCGAA-GAA--------------------------------------------------AAGGAGAGTCG--CAG--------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------GAAAAG---------CC---------------------------------------------------------------------------------------------------------AAAGTT---------------------------------------------CCACATATTGT----AGAA-------------------------------GA---------TACTACTCCACAT--TGTCATCCACAA----------CT
droEre2 scaffold_4770:17613393-17613579 + ACGAC--------------------------------------------------------GACG----------------------------------------------------------------------------------------------------------------------------------G------------------CGAAGATGATGATGATGCG------------GC---------------TGAT--------------------------------------------------TTGGGCT----------------------------------------------------TATCACGTTCACGGGAGACTGAAAGACGCTCTA-----------CAGGTTTACACGAACCTGGGAGTTCTGATATCTACGAAAAACTGCAAGGTTT------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTGAAGAG-------------------------AGTCTTTATAAATATAGTTTTTCTTGATGATCAT--------------------A---CATAGTAAA--GAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCTG-GTAATGATGATGA---------------------------------TG---------------------A-TGTCGCT--AAT--AGC-------------------------------------------ACACGGAA-ATTGTCACGGTGAGTTCCTT-ATCA-----CCAT----ATTATGTTGATGATGTCGA---TGATGATGATGATGATGATGATGATAAT------------GT---------------TGAT--------------------------------------------------TTGGGAAAAT------GCTTTTATAAGAAATGCAAAGTGCAGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGAATTACTTATAGATATTGAAAAGTAA-TTTATAGTTATACCATAGAT---------------------------------------------ACAATTATTTT----AAGA-------------------------------GA----------------------TT---TCAGATCTACAGTGCA--GCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................GATGATGATAAT------------GT---------------TGAT--------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1884.383517011016
............................................................................................................................................................................................................................TGATGATGATAAT------------GT---------------TGAT--------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1972.86206000014
.............................................................................................................................................................................................................................GATGATGATAAT------------GT---------------TGAT--------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19181.50279000018
............................................................................................................................................................................................................................TGATGATGATAAT------------GT---------------TGAT--------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.547400003
.............................................................................................................................................................................................................................GATGATGATAAT------------GT---------------TGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1780.131000100
.........................................................................................................................................................................................................................................................................T--------------------------------------------------TTGGGAAAAT------GCTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.131000010
................................................................................................................................................................................................................TGATGATGATGATGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000200
.............................................................................................................................................................................................................................GATGATGATAAT------------GT---------------TGAT--------------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081001000
droVir3
TTATAA---TCATAATCA---------------------------------TA---------------CTTA---------------T--AAT-----------------------------------------------------------------------------------------------------------------AA------TGATAGTCACAATGACAATGA------T---AATGATAATTAATTTTTTTAA--------------------------------------------------TTATAAGTAT------TTTATTAAGTCAAAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCCGATTAATCAAATATTTGTAAATGTTTAATTTTTTTACTTTTATATAATTCTCTT----CAAA-------------------------------TA----------------------TT---TTAGAACTA----------CASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................AAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCCGATTAATCAAATAT.................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTATATAATTCTCTT----CAAA-------------------------------..................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TAAGTAT------TTTATTAAGTCAAAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG...................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAATTCTCTT----CAAA-------------------------------TA----------------------TT---TTAG.................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAATTCTCTT----CAAA-------------------------------TA----------------------TT---TTAGAAC..............2911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGATTAATCAAATATTTGTAAATGT.......................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................TGACAATGA------T---AATGATAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.071000000000000000000000000000000000000000000000000000000000000100
droGri2
ATGGC--------------------------------------------------------GATG----------------------------------------------------------------------------------------------------------------------------------ACGA---CACCGAGGATGATGACGATAATGATGACAAAGA------T---GG---CCAGCA----------------------------ATAAGTTGGCACCAAATGATTTGGATGCAAGCTTAAGATGCTAAACAG--------------------------------------------ATCATGTTCCTC--------------TCACTAAGAATCAATCATATGTATATACATATATATATATATATCTATATCT-------------------------------------------------------------------------------------------------------------------------------------ATATAT-----------------------------------------------------AT---------------------------------------------ATATATATATCTGTATAAG---TGGGACTAAA--------------------------------ATGAAGACTAGT---TTAGTTCGGAGTTGGA--GATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGATGA---TGATGATGT---------------------------------TG---------------------A------------T--GATGACTACAAC-----------------------------------------A-A---CGACGACGAGCGGGCT-ATGA-----TGATGAATATGATGATGATGATGATGA---TG------ATGACGATGATGATGATAATGA------TGATGGGG------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGAAATGTCAGAAA-------------------------TGGACTGTTGAAAGTTGAAGAGATTTGTTTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................GA-----TGATGAATATGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
........................................................................................................................................................................................................GA---TG------ATGACGATGATGATGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400103
..........................................................................................................................................................................................ATGATGATGATGATGA---TG------ATGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200020
....................................................................................................................................................................................................TGATGA---TG------ATGACGATGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
...................................................................................................................................................................................................ATGATGA---TG------ATGACGATGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
..........................................................................................................................................................................................................................GATGATGATGATAATGA------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200020
..................................................................................................................................................................................................GATGATGA---TG------ATGACGATGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
.....................................................................................................................................................................................................GATGA---TG------ATGACGATGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................ATGATGATGATGATGA---TG------ATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.......................................................................................................................................................................................................TGA---TG------ATGACGATGATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
.....................................................................................................................................................................................ATATGATGATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
TGATGA---TGATGATGT---------------------------------TG---------------------A------------T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
.............................................................................................................................................................................................ATGATGATGATGA---TG------ATGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
.GATGA---TGATGATGT---------------------------------TG---------------------A------------T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100001
.....................................................................................................................................................................................................GATGA---TG------ATGACGATGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100001
.GATGA---TGATGATGT---------------------------------TG---------------------A------------T--G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
..................................................................................................................................................................................................GATGATGA---TG------ATGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................................................................................................................................................................................TATGATGATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..ATGA---TGATGATGT---------------------------------TG---------------------A------------T--G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100001
...............................................................................................................................................................................................GATGATGATGA---TG------ATGACGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
TGATGA---TGATGATGT---------------------------------TG---------------------A------------T--GAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.................................................................................................................................................................................................TGATGATGA---TG------ATGACGATGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
.....................................................................................................................................................................................................GATGA---TG------ATGACGATGATGATGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...............................................................................................................................................................................................GATGATGATGA---TG------ATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
......................................................................................................................................................................................................ATGA---TG------ATGACGATGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
dp5
ACAAAA---TTTTGTCGA---------------------------------TT---------------------T-TTT---CGA--T--AGT---------GGTGGGGGAATTTTTTGCTTTTTTTGTTGATAGTGATGACAACATTTTTTCGATTTTTTCAATA----GTGGTGTGTG--------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TTTT-GCTTTTTTTTTTTTGATAGTGATGACAAAATT----------------------------------------------------------------------------------------------------G-TATA----------------------------------------------------------------GATTTTTT----CGATAGTGATGGGTGAA--------------------------------TTTTAAGCAATTTTTTTTTGATAG----------TGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................GA---------------------------------TT---------------------T-TTT---CGA--T--AGT---------GGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----CGATAGTGATGGGTGAA--------------------------------TTT.................................2330.3310100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT----CGATAGTGATGGGTGA.....................................................................2140.2510100000000
..............................................................................T---CGA--T--AGT---------GGTGGGGGAATTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
..................................................................................CGA--T--AGT---------GGTGGGGGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910100000000
droPer2
TTATCA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--GCT---------------------------------------------------------------------------GC-----TGGTGT---------------------------------CTATGCTGCTGATGTCGCT------------GC---------------TGCC--------------------------------------------------TTGGGTCGCTG--CAG--------------------------------------------TTATTGTCGCTG--------------GCACAG-----------TGGGCACACACAAACCAATTTATTTATCTATTTTT-------------------------------------------------------------------------------------------------------------------------------------TCACAG-----------------------------------------------------CT---------------------------------------------ACAGTTCTT-----------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................TGCTGATGTCGCT------------GC---------------TGCC--------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501010000
..................................................................................................................................................................................................................................................................................................................................CGCTG--CAG--------------------------------------------TTATTGTCGCTG--------------.......................................................................................................................................................................................................................................................................................................................................................................................................20190.112200000
..................................................................................................................................................................................................................................................................................................................................CGCTG--CAG--------------------------------------------TTATTGTCGCTG--------------GCA....................................................................................................................................................................................................................................................................................................................................................................................................23150.071010000
.........................................................................................................................................................................................................................................................................................................................................................................................TATTGTCGCTG--------------GCACAG-----------TGGGCAC...............................................................................................................................................................................................................................................................................................................................................................................24150.071010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCTG--------------GCACAG-----------TGG...................................................................................................................................................................................................................................................................................................................................................................................19160.061010000
..........................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCTG--------------GCACAG-----------TGGG..................................................................................................................................................................................................................................................................................................................................................................................20160.061001000
.....................................................................................................................................................................................................................................................................................................................................TG--CAG--------------------------------------------TTATTGTCGCTG--------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................19180.061010000
....CA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--GCT---------------------------------------------------------------------------GC-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...TCA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...TCA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
....CA--CTGCTGCTGA---------------------------------TG---------------TCGA---------------T--GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
TGATGT---TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGA---AGATAA------TGAAGAAGATGAAAATGATGA------TAATATTGAAAAGTATTTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTA--------------------------------------------------------------------TGTATACATTCTTCATAGTGAATTCAAAATG---------TT-------------------------------------GAAAATA-----------------------------------------AGTAT-TTTGTACAAAATGCATAGAC------------------------------------------------------------------------------------------------------------------------------------------GC--GATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAATAA---TAATCGCGT---------------------------------AT---------------------A------------T--G------------------------------------GTTGGCATTAAAAACAA-ATTGTTATGACGGCCTCATCA----GATGTACATGATTATCATCATTATGATGATAA---TAA------TGATGATCATGATGATGATCA------TGATGTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGCGA---TAATGACGG---------------------------------CA-----------------------------------------------------------CAT---------------------------AA-ACAGCCACGATGA-----------------TGATGATGATGATGATGATGATGATGA---TG------ATGATGATGATGATGATGATGA------TGATGGGGAACCGGAGCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATACAAACAA-------------------------TATACAGT--------ACAGAGAACGAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droFic1
ATTA-GTGATGATGATGA---------------------------------TG---------------------A-TGATGTT--GAT--GGTGATGATGAT----------------------------------------CG-ATGGTGATGATGG-----T------GATGATGATGATGATGATGGTGATGATGGTGA---TG------ATGGTGATGATGATGATGGTGA------TGATGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATSizeHit CountTotal NormTotal
No Reads
droEle1
GATG-ATGATGATGATGA---------------------------------TG---------------------A-TGATGAT--GAT--GATGATGATGAT-----------------------------------------G-ATGATGATGATGA-----T------GATGATGATGATGATGACGATGATGATGATGA---TA------ATGACGATGACGATGATGATGA------CGATGAT-------------------------------------------GATGACAACTTA-------------TTAGAAAA---------------------------------------------------------------------------------------------------------------------------------------AACGCAATGCCC------------------TAACAGTAAATTCTCCTTCAAAATTTCGTCAT-------------------------------------------------------------------------------------------------AAAAAGAAA-TTAAGATTAATGAATGAAAT---------------------------------------------TCCAATGCTTA----AAAA-------------------------------AA----------------------CT-----CTAACTC----------TASizeHit CountTotal NormTotal
No Reads
droRho1
TGAAGA---TGTTGTTAT---------------------------------TG---------------------A------------TATAAC---------------AATAAGCA---------------------------------------------AA-----AA-----TGGAATTTCTGATGT------------------------TGA------------------------------------GAGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATA----------------------AAAAGGTTAA---TGA-----------------------------------------------------AAAATTAAGAATTATAAACAGTGAAACAGACATTGAAAATA-----------------------------------------AGCA----A---------------------------------------------------------------AC-------------------------ACAATTTGAAACTATTCTTTATGTTTATAATCATAAAACTAAACATAATACCACAGGCAG----------AASizeHit CountTotal NormTotal
No Reads
droBia1
TAATGG---TGTTTCTAA---------------------------------AG---------------TTGATTATTTC---TTA--T--AGC---------TGCAAGGGTATACA---------------------------------------------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGCTTGCCGAAGTTAACTT------------------------------------------------------------------------------------------------AGGCAATTATTATTAGGC------------------------------------------------AATAATTTTACCACTTATGAATAGTG-------------------------CTTAG-----------------------------------------------------TT---------------------------------------------ATAG-----------------------------------CTAATTTTTGGGTTTTTGGT--------------------ATAA---ATCAGTAAA--AGASizeHit CountTotal NormTotal
No Reads
droTak1
TTCTTA---TCAATTGAA-------------------------------CACT---------------------T-TGTTTCT--GTT--GCCA------------------------------------------------------------GTGAGCTCGTC-ATT-----------------A---------------------------AAAAGATTGTGTCGGTGAAAG------T----------------------------------------------------------------------------AGCTT----------------------------------------------------CATTATTTTCAAGAGATATAATATGACATGTGT-----------CAGTGATATA-------------------------------------------------------------------------------------------------------------------------------------------AGGATA--------------------------------------------ATAAAGTAG-CTTA--------------------------------------------------TATACCCTTGCAG-ATCATTCT----ATTA-------------------------------AT----------------------TT---ACAAATCGG---CAAAATGTTSizeHit CountTotal NormTotal
No Reads
droEug1
AACAGC---ACACAGAGACAACTTTCACATTTTACGAGTTTTATATGAGCCCTCAGTGCCCGTTG--------------------------AC--------------------------------------------------------------------------------------------------GATGACGA---TGATG------ATGAGGACGCTAAATACAATGA------TGGTATTT-------------TCACTTGAGAGTTTTACGAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGCGCTACAAAT-------------------------------------TA-----CACGAT-------------------------------AAATAGAAAATTATGA--------------------------------------------------------------------------------------------------------------------------------------------------C----------TASizeHit CountTotal NormTotal
No Reads
dm3
ATGAG--------------------------------------------------------GATGACGTCGA---------------T--GAA-----------------------------------------------------------------------------------TACGATGATTA---------------------------CTCCGAAAGTGATGACGAAGA------T---------------------GGC--------------------------------------------------CCGGGAGA---------------------------------------------------------------------------------------------------------------------------------------CATGCAACTGTA------------------TAAT-GCTAATTTTATATAAACACTTATCAATAAAGTGTATTACAGTT-------------------------------------TAA----------------------------------------------------------------TATAGCC---------------------------------------------ACTTCTTT------------------------------------------------------------------------------TT----------TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................ATGACGTCGA---------------T--GAA-----------------------------------------------------------------------------------TACGATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGTGATGACGAAGA------T---------------------GGC--------------------------------------------------CCGGGAGA---------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGACGTCGA---------------T--GAA-----------------------------------------------------------------------------------TACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TA---------------------------CTCCGAAAGTGATGACGAAGA------T---------------------GGC--------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................ATGACGTCGA---------------T--GAA-----------------------------------------------------------------------------------TACGATGATTA---------------------------CTCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATA-ATAATAATTATAA---------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------A---TAA------TTATAATAATAATAATAATTA------TAATGTTGGTAAGTGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................TTA------TAATGTTGGTAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
droSec2
ATTAT--------------------------------------------------------GATG----------------------------------------------------------------------------------------------------------------------------------CTGA---AGATTA------TGATGCTGGCGAGGATGATGATGACTAC---GG---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------CTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTTC-ATCACGA-GACGA---------------------------------TG---------------------A-A----------------------------------------------------------------------------------------------------------------ATGGCGATGGCGA---TGA------TGATGATAATGATGATGATGA------TGATGCGAGAAAGCAGCCGAA-GAA--------------------------------------------------AAGGAGAGTCG--CAG--------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------GAAAAG---------CC---------------------------------------------------------------------------------------------------------AAAGTT---------------------------------------------CCACATATTGT----AGAA-------------------------------GA---------TACTACTCCACAT--TGTCATCCACAA----------CTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................GATAATGATGATGATGA------TGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
............................................................................................................................................................................................................................TAATGATGATGATGA------TGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEre2
ACGAC--------------------------------------------------------GACG----------------------------------------------------------------------------------------------------------------------------------G------------------CGAAGATGATGATGATGCG------------GC---------------TGAT--------------------------------------------------TTGGGCT----------------------------------------------------TATCACGTTCACGGGAGACTGAAAGACGCTCTA-----------CAGGTTTACACGAACCTGGGAGTTCTGATATCTACGAAAAACTGCAAGGTTT------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGTGAAGAG-------------------------AGTCTTTATAAATATAGTTTTTCTTGATGATCAT--------------------A---CATAGTAAA--GATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:01 PM