ID:

dmo_752

 Coordinate:

scaffold_6473:11872392-11872542 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.6 -5.4 -5.3

Flybase annnotation

intron [Dmoj\GI15829-in]; CDS [Dmoj\GI15829-cds]; exon [dmoj_GLEANR_16538:2]; intron [Dmoj\GI15829-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_4471:4412-4447 +
  2. scaffold_6467:53778-53813 -
  3. scaffold_6473:2766798-2766833 -
  4. scaffold_6473:4362363-4362398 +
  5. dmo_752  scaffold_6473:11872450-11872485 +
  6. scaffold_6496:11557569-11557604 -
  7. scaffold_6496:17544192-17544227 -
  8. scaffold_6496:23978793-23978828 +
  9. scaffold_6500:16091216-16091251 -
  10. scaffold_6540:13975315-13975350 -
  11. scaffold_6540:20269066-20269101 -
  12. scaffold_6680:6481373-6481408 +
star

Sense Strand Reads

-------------#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCGATTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCAAGGATTACCCATTGACGAGAGCCCAATACCAATACCAAATACCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGCTAAACCCGCCTCTACCACAACTCAGCCACACTAATACTTTCTCGTACTAATAATATATCCTTGGTTTGTTAGAGATTGTTAATCAGCTCATAAGCTTTCT
**************************************************...........(((.......((((((.................................................................................................................))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V041
embryo
 V056
head
 V049
head
 M046
female body
 V110
male body
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 0 12 14.25 171 85 84 2 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 0 19 9.95 189 96 86 7 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 0 20 9.65 193 98 81 14 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 0 20 5.85 117 117 0 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG............................................................................................................... 36 0 20 2.65 53 53 0 0 0 0
......TTTGCAGGTACTTTGAGAAGCATACCAG......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0
............................................................................................................................AAAAAAAAAAAAAAAAAAAAGAAAAGCTAAACACG............................................................................................ 35 2 1 1.00 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAA........................................................................................................... 36 1 20 0.70 14 11 2 1 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAA...................................................................................................... 36 0 3 0.67 2 2 0 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAA........................................................................................................ 36 0 6 0.50 3 1 2 0 0 0
................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAA....................................................................................................... 36 0 6 0.50 3 1 2 0 0 0
..............................................................................................AAGACCAACAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................... 36 1 2 0.50 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA............................................................................................................. 35 0 20 0.40 8 3 5 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 35 0 20 0.35 7 5 2 0 0 0
.................................................................................................ACCAACAAAAACAAAAAAAAAAAAAAAAAACAAAAA...................................................................................................................... 36 2 3 0.33 1 1 0 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAG.......................................................................................................... 36 0 6 0.33 2 0 2 0 0 0
.................................................................................................................AAAAAGAAAAAAAAAAAAAAAAAAAAGAAAAGAAAA...................................................................................................... 36 1 4 0.25 1 0 1 0 0 0
....................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAACC.................................................................................................... 35 1 4 0.25 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 35 0 20 0.25 5 5 0 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 35 0 18 0.22 4 3 1 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAAAATAAGAAAAGAAAA...................................................................................................... 36 1 5 0.20 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGAAA............................................................................................................ 36 1 20 0.20 4 2 2 0 0 0
................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGAAA....................................................................................................... 36 1 20 0.20 4 2 2 0 0 0
..................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAG..................................................................................................... 36 1 20 0.20 4 2 2 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAATAAAAAAAGAAAA........................................................................................................... 36 1 20 0.15 3 2 1 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAT.......................................................................................................... 36 1 20 0.15 3 1 2 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.15 3 1 2 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGAAAA........................................................................................................... 36 1 20 0.15 3 2 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAAAA........................................................................................................... 36 1 20 0.15 3 1 1 1 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAAA............................................................................................................ 36 1 20 0.15 3 3 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGAA............................................................................................................. 36 1 20 0.15 3 3 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAACAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.15 3 1 2 0 0 0
....................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA................................................................................................................... 36 1 20 0.15 3 3 0 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGA......................................................................................................... 36 0 7 0.14 1 1 0 0 0 0
................................................................................................................AAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAGAAA....................................................................................................... 36 1 7 0.14 1 0 1 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAAAATAAAAAAAGAAAAGA......................................................................................................... 36 1 7 0.14 1 0 1 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAGAAAAGAA........................................................................................................ 36 1 7 0.14 1 1 0 0 0 0
.................................................................................................ACCAACAACAAAAAAAAAAAAAAAACAAAAAAAAAA...................................................................................................................... 36 2 7 0.14 1 1 0 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAATACAAAAAAAAGAAAAGAA........................................................................................................ 36 2 7 0.14 1 1 0 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAATAAAAAAAAAAGAAAAGA......................................................................................................... 36 1 7 0.14 1 1 0 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAACA...................................................................................................... 36 1 7 0.14 1 1 0 0 0 0
..............................................................................................................AAAAAAAAAAAATAAAAAAAAAAAAAAAAGAAAAGA......................................................................................................... 36 1 7 0.14 1 0 1 0 0 0
...............................................................................................................AAAAAAAAACAAAAAAAAAAAAAAAAAAGAAAAGAA........................................................................................................ 36 1 8 0.13 1 0 1 0 0 0
...............................................................................................................AAAAAAAAAAAGAAAAAAAAAACAAAAAGAAAAGAA........................................................................................................ 36 2 8 0.13 1 0 1 0 0 0
................................................................................................................AAAAAGAAAAAAAAAAGAAAAAAAAAAGAAAAGAAA....................................................................................................... 36 2 8 0.13 1 0 0 1 0 0
...............................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAA........................................................................................................ 36 1 8 0.13 1 0 0 1 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAA...................................................................................................... 36 1 8 0.13 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAA........................................................................................................... 36 1 17 0.12 2 1 1 0 0 0
..........................................................................................................................................................................................................AAGATATCCTCGGTTGGTT.............................. 19 3 9 0.11 1 0 0 0 0 1
..............................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGA......................................................................................................... 36 1 9 0.11 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAGAAAA........................................................................................................... 36 1 18 0.11 2 1 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.10 2 1 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.10 2 1 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAACAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.10 2 1 1 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGA.............................................................................................................. 36 1 20 0.10 2 0 2 0 0 0
..........................................................................................................AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.10 2 1 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAA............................................................................................................ 36 1 20 0.10 2 1 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAA............................................................................................................. 36 1 20 0.10 2 0 2 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAGAATAAAACAAAAAGAAAAGA......................................................................................................... 36 3 10 0.10 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.10 2 1 1 0 0 0
....................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................... 35 0 20 0.10 2 2 0 0 0 0
................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATAAA....................................................................................................... 36 1 20 0.10 2 0 2 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAG............................................................................................................... 36 1 20 0.10 2 1 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.10 2 0 1 1 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.10 2 0 2 0 0 0
....................................................................................................AACAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................... 36 1 20 0.10 2 2 0 0 0 0
....................................................................................................AACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................... 36 1 20 0.10 2 0 2 0 0 0
....................................................................................................AACAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................... 36 1 20 0.10 2 0 2 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATAA........................................................................................................ 36 1 20 0.10 2 0 2 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAG............................................................................................................... 36 1 20 0.10 2 0 2 0 0 0
..........................................................................................................AAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.10 2 1 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGAAAA........................................................................................................... 36 1 20 0.10 2 1 1 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAGAAAAATAAAAGAAAAGA......................................................................................................... 36 2 10 0.10 1 0 1 0 0 0
..................................................................................................CCAACAAAAAAAAAAAAAAAACAAAAAAAAAAAAAA..................................................................................................................... 36 1 11 0.09 1 0 0 1 0 0
..................................................................................................CCAACAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................... 36 1 11 0.09 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 14 0.07 1 1 0 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAGAAAGAAGAAAAGAAAA...................................................................................................... 36 2 14 0.07 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 14 0.07 1 0 1 0 0 0
............................................................................................................AAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 14 0.07 1 1 0 0 0 0
..............................................................................................AATACAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................... 36 1 14 0.07 1 1 0 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAAAAACATAAAAGAAAAGA......................................................................................................... 36 2 15 0.07 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 15 0.07 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 16 0.06 1 1 0 0 0 0
............................................................................................................AAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 16 0.06 1 0 1 0 0 0
............................................................................................................AAAAAAAAGAAGAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 2 17 0.06 1 1 0 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAGA...................................................................................................... 36 1 19 0.05 1 1 0 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAAGA......................................................................................................... 36 1 19 0.05 1 1 0 0 0 0
............................................................................................................AAAAAAAAAACAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 19 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAA............................................................................................................ 35 1 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
......................................................................................................CAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA................................................................................................................. 36 1 20 0.05 1 0 0 1 0 0
............................................................................................................AAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAGAAAA........................................................................................................... 36 2 20 0.05 1 0 1 0 0 0
...................................................................................................CAACAAACAAAAAAAAAAAAAAAAAAAAAAAACAAA.................................................................................................................... 36 2 20 0.05 1 0 0 1 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAACAAAAAAAAAAAGAAAATAA........................................................................................................ 36 2 20 0.05 1 0 1 0 0 0
.........................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAATAAAAAAAAAAAAAAATAAAGAAAA........................................................................................................... 36 2 20 0.05 1 1 0 0 0 0
...................................................................................................CAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................... 36 0 20 0.05 1 0 0 1 0 0
...........................................................................................................AAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAACAAAAAAAAAAAAAGAAAA........................................................................................................... 35 1 20 0.05 1 0 1 0 0 0
........................................................................................................AAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
.........................................................................................................AAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
................................................................................................CACCAACAAAAAACAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................... 36 2 20 0.05 1 0 0 1 0 0
.....................................................................................................ACAAAAAAAAAAAAAAAAAA.................................................................................................................................. 20 0 20 0.05 1 0 0 0 1 0
................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAT....................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAACAAAAAAAAAGTAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 3 20 0.05 1 1 0 0 0 0
.........................................................................................................AAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
.........................................................................................................AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAA........................................................................................................... 35 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAGAAAAAAAACAAAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 2 20 0.05 1 1 0 0 0 0
...................................................................................................CAACAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAA.................................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
............................................................................................................AAAAGAAAAAAAAAAAACAAAAAAAAAAAAAGAAAA........................................................................................................... 36 2 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
.............................................................................................................AAAAAAAAAAAAAAAAAAAAAATAAAAAAAGAACAG.......................................................................................................... 36 2 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAACAAAGAAAAAAAAAGAAA............................................................................................................ 36 2 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
..............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAGA......................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
...................................................................................................CAACAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAA.................................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAACAAAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
..................................................................................................CCAACAAAAAAAACAAAAAAAAACAAAAAAAACAAA..................................................................................................................... 36 3 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 1 0 0 0 0
.........................................................................................................AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
...................................................................................................CAACAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAA............................................................................................................ 36 2 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 1 0 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
........................................................................................................AAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAGAA............................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAG........................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAATAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
....................................................................................................AACAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA.................................................................................................................... 35 1 20 0.05 1 0 1 0 0 0
.............................................................................................................AAAAAAAGAAAAAAAAAAAAAAAAAAACAAGAAAAG.......................................................................................................... 36 2 20 0.05 1 0 1 0 0 0
...........................................................................................................AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 1 0 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAGACAA........................................................................................................... 36 2 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAATAAAAAAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAAA........................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAATAAAAGAAAA...................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
........................................................................................................AAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAG............................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
....................................................................................................AACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAGA.............................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
...........................................................................................................AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAGAAA............................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAA............................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
............................................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAAGAAAA........................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
.........................................................................................................AAAAAAGAAAAAAAGAAAAAAAAAATAAAAAAAAGA.............................................................................................................. 36 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

AGAGCTAAACGTCCATGAAACTCTTCGTATGGTCAGTGTGTAGGATGGTCCACTCGTTCCTAATGGGTAACTGCTCTCGGGTTATGGTTATGGTTTATGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTCGATTTGGGCGGAGATGGTGTTGAGTCGGTGTGATTATGAAAGAGCATGATTATTATATAGGAACCAAACAATCTCTAACAATTAGTCGAGTATTCGAAAGA
**************************************************...........(((.......((((((.................................................................................................................))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
...............................................................................................................................................................GGCGATGGTGTGGAGTAGG......................................................................... 19 3 17 0.06 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:11872342-11872592 + dmo_752 TCTCG--------ATTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCAAG----------------------GA--TTACCCA--------TTGACGAGAGCCCAATAC-----CAATACCAAATACCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAAAAG-CT-AAA-CCCGCCTCTACCACAACTCAGCCACACTAATACTTTCTCGTACTAATAA-------------------------TAT--------------------ATCCTTGGTTTG---TTAGAGATT--GTTAATCAGCTC-ATAAGC-TTTCT
droVir3 scaffold_12970:9696403-9696597 - TTTGA---------TTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCCTT----------------------GACCGTCGACGGCAGTCTATAGACTAGAGCCCTCCCC-----C--------------CC-C-----------------------------------------------------T-CA-AAA-------TCCCCCTCTACTCAGACGCACCAAAACTTT-TATTACTA---A---------------------------TATCCTCGTTTTCTGTTATATATATACATATATA---------------------AATATATACATATATGT
droGri2 scaffold_14853:342221-342353 + TTGA----------TTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGAG-CCTTATGATGATTGATTCCCCTTGATTG------------------------CC----AAATTAGCCAAATCGCCAGA--CC-CAAAAAA------------AAAAAGAAAA---------ACTAA--------------AA-AA-----------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:5753914-5754028 + ATTAA-----------AACAGATTATTA----------------------------------------------------------------------------------------------------------------------ACAAAAAAAAATAAAAACCAAAAACCAAAAAAAAAAAAAAA---------ACGCCAAT--AAAAA-CCAGTTCCAGTCGCATTACCAGCTCATTAAACGTTTTTTGAACT--------------------------------------------------------------------------------------------------------
dp5 XL_group1e:1115279-1115543 - TCTCTATCTTTAATTCTGCAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGA----------------------CA--GTTCCCG--TGTCT-------TGAG---AATACAGCTGAAAAACCAAATACCAACTAAATCCA-AATTATCCAAACAAACGAAAA---------ACCAACTACAACAAAATACAA-AAAATAGTACTA---------------------------CTCGTAATACTAATCAAACCCCCGCCCGCCCCCTGATGTAT--------------------ATTTTTGTATCGTATTTTGAGATTCGGTTGCTTGACTA-TTTTGCATTTGT
droPer2 scaffold_30:80362-80612 + TC--------------TGCAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGA----------------------CA--GTTCCCG--TGTCT-------TGAT---AATACAGCTGAAAAACCAAATACCAACTAAATCCA-AATTATCCAAACAAACGAAAA---------ACCAACTACAACAAAATACAA-AAAATAGTACTA---------------------------CTCGTAATACTAATCAAACCCCCGCCCGCCCCCTGATGTAT--------------------ATTTTTGTATCGTATTTTGAGATTCGGTTGCTTGACTA-TTTTGCATTTGT
droAna3 scaffold_6765:5-115 - CTAAA----------TTAGCGATGATTTTCT----------------------------------------------------AGCGGTGTGTG------------------------CG----ATAGAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------AAAAAAAA--A-AAA-CC--------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396733:408109-408169 + TCTAT--------TATTTCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGAAAA----------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302610:1230101-1230163 - CTTCTACA----ATATTCCAGGTACTTTGAGAAGCATACCAGCCACACATCCTACCAGGTAAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454077:1210718-1210775 + TTTCC---------ATTTTAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490546:449030-449098 + AAAAA--------CAAA---------------------------------------------------------------------------------------------------------------------------AGCAAACA-CAAACACAAAAACAAAAACAAAGCAAAAAACAAAACAA---------AAGAAAAGATAA-AC-----------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777390:19709-19769 + TTTCCACC----ATTTTTTAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:1232512-1232566 + TCTCC----------ATTCAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413135:21400-21456 - CCTCA--------CCATTCAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409271:29164-29221 - TCCCA-------TTTCTTTAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3RHet:1280124-1280192 - CAATA--------AATAATAAAA---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAAAAAAAAAAAAAATCATAATAATA---------ATAATAAAAAT-AAA-----------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:16087724-16087784 - TCCCCACC----ATTTTTCAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:803326-803379 - CGT-----------TTTCCAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:15581814-15581872 - CACCA--------TTTTCTAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTAAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:7323348-7323398 - TT--------------TCTAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCTCG--------ATTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCAAG----------------------GA--TTACCCA--------TTGACGAGAGCCCAATAC-----CAATACCAAATACCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAAAAG-CT-AAA-CCCGCCTCTACCACAACTCAGCCACACTAATACTTTCTCGTACTAATAA-------------------------TAT--------------------ATCCTTGGTTTG---TTAGAGATT--GTTAATCAGCTC-ATAAGC-TTTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AA..................................................................................................................................................................361214.2517108528400
........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------A...................................................................................................................................................................36199.9518909678600
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------....................................................................................................................................................................36209.65193098148100
......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA..............................................................................................................................................................................36205.8511701170000
.....................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG...............................................................................................................................................................................36202.65530530000
..............TTTGCAGGTACTTTGAGAAGCATACCAG..............................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAAAA.............................................................................................................................................................3630.672020000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAA...............................................................................................................................................................3660.503010200
.............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAAA..............................................................................................................................................................3660.503010200
........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------....................................................................................................................................................................35200.408030500
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA..............................................................................................................................................................................35200.357050200
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAG.................................................................................................................................................................3660.332000200
.........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------A...................................................................................................................................................................35200.255050000
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AA..................................................................................................................................................................35180.224030100
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAT.................................................................................................................................................................36200.153010200
...........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGA................................................................................................................................................................3670.141010000
.................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................35200.102020000
................................................................................................................................................CAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................36200.051001000
..................................................................................................................................................ACAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................20200.051100000
.............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAAT..............................................................................................................................................................36200.051010000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA---------AAGAG...............................................................................................................................................................36200.051000100
droVir3
TTTGA---------TTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCCTT----------------------GACCGTCGACGGCAGTCTATAGACTAGAGCCCTCCCC-----C--------------CC-C-----------------------------------------------------T-CA-AAA-------TCCCCCTCTACTCAGACGCACCAAAACTTT-TATTACTA---A---------------------------TATCCTCGTTTTCTGTTATATATATACATATATA---------------------AATATATACATATATGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TTGA----------TTTGCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGAG-CCTTATGATGATTGATTCCCCTTGATTG------------------------CC----AAATTAGCCAAATCGCCAGA--CC-CAAAAAA------------AAAAAGAAAA---------ACTAA--------------AA-AA-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATTAA-----------AACAGATTATTA----------------------------------------------------------------------------------------------------------------------ACAAAAAAAAATAAAAACCAAAAACCAAAAAAAAAAAAAAA---------ACGCCAAT--AAAAA-CCAGTTCCAGTCGCATTACCAGCTCATTAAACGTTTTTTGAACT--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TCTCTATCTTTAATTCTGCAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGA----------------------CA--GTTCCCG--TGTCT-------TGAG---AATACAGCTGAAAAACCAAATACCAACTAAATCCA-AATTATCCAAACAAACGAAAA---------ACCAACTACAACAAAATACAA-AAAATAGTACTA---------------------------CTCGTAATACTAATCAAACCCCCGCCCGCCCCCTGATGTAT--------------------ATTTTTGTATCGTATTTTGAGATTCGGTTGCTTGACTA-TTTTGCATTTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................AAA---------ACCAACTACAACAAAATACA.........................................................................................................................................................2311.0010010000000
droPer2
TC--------------TGCAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGA----------------------CA--GTTCCCG--TGTCT-------TGAT---AATACAGCTGAAAAACCAAATACCAACTAAATCCA-AATTATCCAAACAAACGAAAA---------ACCAACTACAACAAAATACAA-AAAATAGTACTA---------------------------CTCGTAATACTAATCAAACCCCCGCCCGCCCCCTGATGTAT--------------------ATTTTTGTATCGTATTTTGAGATTCGGTTGCTTGACTA-TTTTGCATTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................TTGAGATTCGGTTGCTTGACTA-TTTTGC......2811.001100000
droAna3
CTAAA----------TTAGCGATGATTTTCT----------------------------------------------------AGCGGTGTGTG------------------------CG----ATAGAAGAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------AAAAAAAA--A-AAA-CC--------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................3674.573200122000
.....................................................................................................................................AAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................3673.57250091600
...................................................................................................................................AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................3673.00210061500
........................................................................................................................................AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................36102.502500111400
.........................................................................................................................................AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................36112.452700131400
......................................................................................................................................AAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................3682.38190071200
.......................................................................................................................................AAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................3692.11190061300
..........................................................................................................................................AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................36101.90190071200
............................................................................................................................................AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................36131.46190031600
.............................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................36161.44230022100
...........................................................................................................................................AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................36111.27140041000
..............................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................................................................................36191.16220071500
...............................................................................................................................................ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................................................36201.102200111100
................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................36200.50100010000
...................................................................................................................................................................................AAAAAAAA---------AAAAAAAA--A-AAA-CC--------------------------------------------------------------------------------------------------------------------------------------------------22200.306060000
...................................................................................................................................AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................3570.292001100
....................................................................................................................................AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................3570.292000200
.......................................................................................................................................AAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................35100.202001100
.................................................................................................................................AGAAAAAAAAAAAAACAAAAAAA................................................................................................................................................................................................................2360.171010000
......................................................................................................................................AAAAAAAAAACAAAAAAAAAAAAA..........................................................................................................................................................................................................24200.153030000
..............................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................35190.112000200
....................................................................................................................................AAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAG................................................................................................................................................................................................36200.102000200
.......................................................................................................................................AAAAAAAAACAAAAAAAAAA.............................................................................................................................................................................................................20200.102020000
.............................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................35160.061001000
.................................................................................................................................................................................AAAAAAAAAA---------AAAAAAAA--A-AAA-CC--------------------------------------------------------------------------------------------------------------------------------------------------24200.051010000
droBip1
TCTAT--------TATTTCAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGAAAA----------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTCTACA----ATATTCCAGGTACTTTGAGAAGCATACCAGCCACACATCCTACCAGGTAAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTCC---------ATTTTAGGTACTTTGAGAAGCATACCAGTCACACTTCCTACCAGGTGAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAAAA--------CAAA---------------------------------------------------------------------------------------------------------------------------AGCAAACA-CAAACACAAAAACAAAAACAAAGCAAAAAACAAAACAA---------AAGAAAAGATAA-AC-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTCCACC----ATTTTTTAGGTACTTTGAGAAGCATACCAGTCACACATCCTACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCTCC----------ATTCAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCTCA--------CCATTCAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCCCA-------TTTCTTTAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTGAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAATA--------AATAATAAAA---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAAAAAAAAAAAAAATCATAATAATA---------ATAATAAAAAT-AAA-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................AAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................18201.252500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................19200.901800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................21200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................26200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................24200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAT.......................................................................................................................................................................................24200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T-TAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................27200.4080000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAT.......................................................................................................................................................................................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAT.......................................................................................................................................................................................28200.2040000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAAAAAAAAAAAAATCATAA..................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAATC......................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAATCATAAC.................................................................................................................................................................................2890.1110000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................18200.1020000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATC......................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T-TAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAATCATAAC.................................................................................................................................................................................27120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T-TAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AA---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAAA...................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAA....................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AA---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAT.......................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAATCAT....................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AT-TAAAAAAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAAAAAAAAAAAAAAAAATC......................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TA--------AATAATAAAA---------------------------------------------------------------------------------------------------------------------------AT-TAAAAA.............................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAT.......................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AT-TAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AT-TAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAATC......................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAAAAAAAAAAAAAAAAAATCA.....................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A---------------------------------------------------------------------------------------------------------------------------AT-TAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAATC......................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCCCACC----ATTTTTCAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CGT-----------TTTCCAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CACCA--------TTTTCTAGGTACTTTGAGAAGCATACCAGCCACACATCATACCAGGTAAGCAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TT--------------TCTAGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:00 PM