ID:

dmo_737

 Coordinate:

scaffold_6473:11087258-11087408 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.8 -23.8

Flybase annnotation

CDS [Dmoj\GI15798-cds]; exon [dmoj_GLEANR_16509:6]; intron [Dmoj\GI15798-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAGCTGCAGACGAATAGCGATGGCACCGTGTGCTTGGCCCCCATGCAGGTAGATAACAGCAACACACCAAACAACAACAGCAACAACAACAACAACAGCAACACAACCAACAGCAGTAATAATAGTAGTAGCGGCAGCCCATCTGCTGCCGCGCCCACCTCGCTGCTGGGCATCTCAGTAATCAACGCTGGCGCCATGCTAGGCCGGCGTCTCACTGGCAGCGGCGCTGGCGTCGCAGCAGCAGCGGCA
*********************************************************************************************************************...............((((((((......))))))))(((((.........)))))....((((.......))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
 M060
embryo
......................................................................................................................................................................................ACGAACGCTGGCGGCATGC.................................................. 19 3 18 3.56 64 54 9 0 1 0
.....................................................................................................................GTAATAATAGTAGTAGCGGC.................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
...................................................................................................GCAACACAACCAACAGCAGTAATA................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
...AGCTGCAGACGAATAGCGATGG.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................GGCATCTCAGTAATCAACGCTG........................................................... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................AGCCCATCTGCTGCCGCGCC.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0
.........AGACGATTGGCGATGGCTCCG............................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0
.....................................................................................................................................................................................GACCAACGCTGGCGGCATGC.................................................. 20 3 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................CAACGCTGGCGGCCTGCT................................................. 18 2 5 0.20 1 0 0 1 0 0
..................................................................................................................................................................................................GCCAAGCTAGCACGGCGTC...................................... 19 3 8 0.13 1 1 0 0 0 0
......................................................................................................................................................................................TTGAACGCTGGCGGCATGC.................................................. 19 3 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................AATGAACGCTGGCGGCAGGC.................................................. 20 3 10 0.10 1 0 0 0 1 0
......................................................................AAACAACAACAGCAACAAC.................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.............................................................................AACAGCAACAACAACAACAACAGC...................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1
.....................................................................................CAACAACAACAACAGCAACA.................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
................................................................................AGCAACAACAACAACAACAGCA..................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCGTCGACGTCTGCTTATCGCTACCGTGGCACACGAACCGGGGGTACGTCCATCTATTGTCGTTGTGTGGTTTGTTGTTGTCGTTGTTGTTGTTGTTGTCGTTGTGTTGGTTGTCGTCATTATTATCATCATCGCCGTCGGGTAGACGACGGCGCGGGTGGAGCGACGACCCGTAGAGTCATTAGTTGCGACCGCGGTACGATCCGGCCGCAGAGTGACCGTCGCCGCGACCGCAGCGTCGTCGTCGCCGT
***********************************************************...............((((((((......))))))))(((((.........)))))....((((.......))))********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V056
head
...........................................................TCGTTGTGTGGTTTGCTGGAGT.......................................................................................................................................................................... 22 3 2 0.50 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:11087208-11087458 + dmo_737 AGCAGCTGCAGACG--------AATAGCGATGGCACCGTG----------TG-------------------------------------CTTG-------GCCCCCATG----C--------AGGTAGATAACAGCAACACACCA-----------------------------------------------------------AACAA---CAACAGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAGCAACAC--AACC---AACAGCAGTAATAATAGTAGT-----------------A-----------------------------------G---CGGC-----------------------------------------AGCCCATCTGCTGCCG-------------------CGCCCACCTC---------------------------------------GCTGCTGGGCATCTCAGTAATCAACG-------------------CTGGCGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGGCCGGCGTCTCACTGGCAGCGGCGCTG--------------------------------------------------------------------------------------------------------------------GCGTCGCAGCAGCAG------CGGCA
droVir3 scaffold_12970:10371124-10371383 - dvi_13910 AGCAGTTACAGACG--------AATAGTGATGGCACCGTG----------TG-------------------------------------CTTG-------GCTCCCATG----C--------AGGTAGATAACAGCAACTCATCCAACAGCTCCAATA--------------------------------------GCGTAA---CGCGCAGCAATAGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAATAACTG-----TAGC---GTCGGCA------GCG-----------------GCAGCAG--------------------------------------C-----------------------------------------AGCACG---GCTGCTG-------------------CGCCAGCTCC---------------------------------------GCTGCTGGGCATCTCAGTTATCAACG-------------------CTAACGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGCCGGCGTATCGCTGCCAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCAGCAA------TAGCA
droGri2 scaffold_14853:6350363-6350646 + dgr_164 AGCAGCTGCAGACG--------AACAGCGATGGCACCGTC----------TG-------------------------------------CTTG-------GCCCCCATG----C--------AGGTAGATAACAGCAATAGCCCCAA------------------CTCTTCCAATAGTGCCA--CG---------CGCACCACCAACAACAGCAA---CA---------------ACAACAACAAC----------------------------------------------------------------------------------------AACAC--CAAC---AACAATAATAATAATAGTAGT-----------------A-----------------------------------G---TAGT-----------------------------------------GGCTCA---GCTGCTG-------------------CGCCAACTTC---------------------------------------GCTGCTTGGCATCTCGGTGATCAACA-------------------CTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCTGCCAAGCTGGGCCGGCGCAGCGCAGCTGG---C---------------------T------------------------------------------------------------------TAGT--CA---------CAGC---AACA------GCTGGAGCTGGTG------CTGCA
droWil2 scf2_1100000004909:8741491-8741713 + dwi_2821 AGCAATTACAAACA--------AACAGCGATGGAACTGTG----------TG-------------------------------------CCTA-------GCACCCATG----C--------AGGTACAA----------------------------------------------------GTC-GCAAGCGGCAACAACATCAATAA---------TA---------ACAGCCAT-ACAACAACAGCAGCAG----------------------------------------------------------------------------CAGCAGCTC-TCACC---AGCAGCGGCAGCAATAGCAGC-----------------A-----------------------------------C---AGGA-----------------------------------------GCAATA---ACCGCTCCCCCAGCCTTGCAAT---------------------------------------------GCT-------------ATCAATTGATAACTGCTA-------------------CTAGT-----GGAGC----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACA--GG------CGACC
dp5 XR_group6:6664651-6664873 + AGCAGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------AGCAATACCA---------------------------------------GCAGCAACAT-------------------------------------CAGCAA---CACTATCAGCAACATTATCAACAACAGCAGC---AGCAG--CAGC---AGCAACAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AGCACT----------------------------------------------------------------------------------------------------TGTACCAGCATC---ATCCC-------------------------------------------------------AGCCTGTCGTCGGTGCTGCCACCCGCTGTCGAGACGGTGGT---------------------GGA------------------------------------------------------------------------------------------GTTG-------------------------------C-------------------------------------------------------------------------AGT--TG---------CAACA---ACAGCTAGTGCAGCAGCAACAG------CAACA
droPer2 scaffold_0:10723628-10723892 + AGCAGCAGCAGCCG---CCGCT-----CTTGAAGAGTG---------------------------------GTCCGCCACCGCTGATCTTTGCCAGCTCCA----CAAATCTGTTGGCCAG--------------------------CAGCAGCAGCAACAGC-----------------------------------------AATCA---------GA------------------ACAACAACAGCGGCAA-------------------------------------------CAG------------------------------T--------------AGC---AACAGCA-----------ACAGTAATAGCA---------A----------------CCACA----GCGGCAG---CAAC------------------------------------------------------------------------------------------------------ATGATGCATGTGGCA---------------------------------------------------------------------------------------------------------AACATGCTGCCAATGCCACC-------ATTGC--------------------AGCCCCAGCAGCAGACGCAGCAGCC------------------------------------------------------------------------------GCC--A------------------------------------------------------------------------------------------------------CAGA--CG---------CAGCC---GCAGCAGGTGCCACAACTGCAG------CCCCA
droAna3 scaffold_13335:2351913-2352159 + AGGTGCAGCAGGCG--------GGAGACGATGGCAGCGGT----------CA-------------------------------------CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------TCGTTCGTGGCCGCTGCAGTGGCCG-CCTCGCAGCAGCAGCACCAGCAAC-------------------------------------AGCAGCAGCAGCAC--TCGC---AGCAACAGCA-----------ACAGCAGGCGCA---------C----------------CAGCA----GATGCCC---CACT------------ACGC---TGTGTCGGCGGT-G---------------------------------------------------CA---------------------------------------CATGCA--------GAGCCACCACCA-------------------CCAGC--AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGGC-GGC--AGCGGTGGCGGCGGCGCAG--------------------------------------------------------------------------------------------------------------------GCGCAGCACCACCAG------CAGCA
droBip1 scf7180000395832:64775-65034 + AGCAGCAGCAGGTC--------GCCAC-----------------------------------------------------------------C-------------G---------CCCAC--------------------------CAGCAGCAACACCAAC-----------------------------------------AGCAG---------CA------------------GCAGCAACAACAACAG----------------------------------CAG------CAA------------------------------C--------------AAC---AACAGCA-----------ACAGCAGCAGCA---------A----------------CAACA----CCAGCAG---CAAC------AG--------------------------------CA--------GCA--------G------------------------CACCAACA----------------------------------------------------------------------------------------------------------ACAACAG---CA--------------C---------------------------------------------------------------------GCC-GCCGTAGCCG-------CCGCCGCAGCCGCCGCCTCGCATCCCCATGTTCATGCCGCTCACGCCCTC-GCCCACGCCCATGCCCCCCAGCTGG---C---------------------G------------------------------------------------------------------CAAC--TG---------CAGC---CCGG-----CCTGCAAGCAGTGG------CGGTA
droKik1 scf7180000302277:963730-963965 - AGGAGCCACAGCCG--------CCCAGTGCCAGACCC-TA-------------------------------------------------CACA-------GCCCCCAGCA-CGCCTCCCAA--------------------------CAGCAGCAGCAGCAGC-----------------------------------------AACAG---------CA------------------------ACAACAGCAG-------------------------------------------CAG------------------------------CAGCAAC--------------AC---CA-----------GCAGCAGCAGCA---------A----------------CAACA----GCAGCAG---CAAC------------------------------------------------------------------------------------------------------AT--CGCGGACTGAAGCG-------------ATCGGGAAGCGATTGCTACGAGGATC--------------------------------------------------------------------------------ACC-------ATCGATCCGCC-------------------------------------------------------------------------------------------------------------GGCGGACTGACGCTC--------------------------------CAG---GGA------------------------------------------------------------------CT---------C---GACAG------CGTCGCCAGCAGCGC------CGGCG
droFic1 scf7180000453850:255019-255272 - AGCAGCAGCG-CCG--------CACGGCGGGGAGCTCG---------------------------------------------------GGCG-------GCCACCA---------GCCAA--------------------------CAGCAGCAGCAGCAGC-----------------------------------------AGCAG---------CA---------------ACAACAGCAACAGCAGCAG-------------------------------------CAGCAG---CGC--------------------------------------TACC---AACAGCAGCA--------------------GCA---------G----------------CAACT----GCG---G---CAGCAGCACCAGCAAATGTCGCA---------GAT-G---------------------------------------------------TC---------------------------------------GCAGCAGG--------CCCACTATCCCCAGCAGC---AGTCTAGTCTGG-----------AGCATGTGCGGCGAC--------------------------------------------------------------------------------AGCAGCA------------------------------------------------------------------------------------------GACG-------------------------------C-AGCAG---CAACAGCA-----------------------------------------------------------------------------GCAG------CAGCAGCAGCATCAG------CAGCA
droEle1 scf7180000491023:299218-299456 - AGCAGCAGCAGCAG---CAGGA-----CCAGCGCACCA---------------------------------CTCTGCATCCGCAGATCC--AC------------CACCA-CC---ACCAA--------------------------CAGCAGC-----------------------------------------AG---------------------CA---------------------GCAGCAGCAGC----------------------------------------------------------------------------------AGCAG--ATGCAAC---ATCAGCA-----------GCA------------GCAGCAGCAG-------------CAA-------------------------------TCCTCG-A---------GATCGG------CGGCCAGTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCAC-------------------------------------------------------------CACCTCGTCCT----GGAAATCC-------------------------------------T------------------GG----T--AGCGGC-------------AACAGCAGCAGC-GG---CAGCAAC---A-------------------------------------------GC---------AGTAA--TT---------CAGCAGCAG------CAGCAGCAGCAGCAG------CGGCA
droRho1 scf7180000777787:21550-21798 - AACAAGCGAAAGC---------AACAACAACAACACTGAGGGCGTTGGCTCA-------------------------------------C---------------CAGG----C--------AACCACAC-------------------ACAATCAC-------------------------ACC-AACAACAGCAGCAA------------------CAGCAACAACAGCTGC-------------------------------ATCACAACAA----------------------------------CAAC--------------------------------------ACCAGCA-----------------------------ACAACAGCAATTGCCA----CCACAGTCAC---CAGCAGCAAC----------------------------------AACAAC-------------------------------------------------------------------------------------------------------------------------------------------------AACACATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCCCCGCAACATCAATACCAACAACACC----AAATA---T-TACACCAACAAC---A-----------------------------------------------------------------------------ACAATTGCCAAATCACCACCATCAT------CATCA
droBia1 scf7180000302126:3398078-3398297 - AGCAGCAGCAGCAG---CACC-------------AT----------------CATCATCAC----------------------------CACA-------GCCACCA-------------G--------------------------CAGCAGC-----------------------------------------AGCAACACCAGCAA---------CA------------------GCAGCAACAACAGCAG-------------------------------------------CAG------------------------------C-----------AGCAAC---AGCAGCA--------------------GCACCAGCAGCAGCAACACGC-CCAGCAGCTGCAG-CAC---CAGCAGCTGC----------------------------------AGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AGCACGTGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------AACACCAG---C-AGCAG---CAACACCA-----------------------------------------------------------------------------CCAC------CACCAGCAACACCAGCAGCTGCATCA
droTak1 scf7180000415868:193658-193887 - AGCAGCAGCGACTA---CGGC-------------AATGTG-------------------------------------------------CGCA-------GTCCCCA-------------G--------------------------GAGCCGC-----------------------------------------AGCATCACCAGTTGCAGCAGCAGCA------------------ACAGCAAC-------------------------------------------------------------------------------AACAGCAGCAGCAC--AATC---AGCAGCAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AGAACA-------------------------------------------------------------CGTACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTCAACAGCAAGTGGAACACTCCGCTCAAGACGGAGAACA-------------------------------------------------------ATGC-GGC--GTCGGT-------------ATCGCCGGCGGCCAC---CATCAAC------------------------------------------------------------------A---------TACCC----------ACATATCCGCAGCAG------AGCCA
droEug1 scf7180000409804:55659-55934 - AGCAGTTGCCGCCG---CCCT-------------AG----------------CCGCC--GCCGCCGC----------------------CTCT-GCC---TCCGCCAGCG-TTTCAGCCAG--------------------------CAGCAGCAGCAGTAAC-----------------------------------------AGCAA---------CA---------------ACAACAACAACAGCAGCAG-------------------------------------CAACAA---CGC--------------------------------------CACT---AGCAACACCAACAATAACAGC-----------------A-----------------------------------G---CAGCAGCCCCAG--------------------------------CA--------GCA--------G------------------------CAGCAATC----------------------------------------------------------------------------------------------------------ACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCTCAATTTGAGCGGAGGATCTCTTTCTCCTAGCCATTTGAGCCAGCATCTGGGCCAGTCGCCCCACTCGCCGGTCTC---CTCG-------TCGTCGCCCTTCCAG------CAGCA
dm3 chr2L:17437566-17437809 - AGCAACTGAT-CTGGGG-----AGCAACTACAA-TCCGTT----------TG-------------------------------------CCCA-------G----CAGGT-CCTTGCCCAG--------------------------CAGCAGCAGCATCAGC-----------------------------------------AGCAG---------CA---------------GCAACAGCACCAGCATCAG----------------------------------CAC------CAGCAG------CAAC---------ACCAACAGC---AGCAGC--AGCAGC---AGCAGCA--------------------------GCAACAG-------------------------------------------------------------------------------CA--------ACA--------GTCCTTGCAATTTCATGCCAATCCC---------------------------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCC-------------------------------------T------------------GGC------GGC----------------AATA--------------------------------------------------------------------GCTGGGAAAGTAAATT--CT---------CGGCGGCAG------CTGTTGCAGCAGCGG------CAGCA
droSim2 x:9134123-9134353 + AGCATGCGCAACAT---CATC-----------------------------TG-------------------------------------CACT-------TGTCCCATC----A------GCAG--GCGCAACAGCAGCACATGCAA------------------CACTTGA-----------------------------C------------------------------------ACAGCAACAGCAGCAG----------------------------------CAG------CAGCAA------CAAC---------AACAGCAGC---AGCAGC--AACAGC---AGCAGCA--------------------------GCAACAA-------------------------------------------------------------------------------CA--------ACA--------G------------------------CCGCAACAGCAGCAACATGACTT---------------------------------------CCT--------------------CAGC-----GCCGC----------------------C--------------ACCCTGCTGTCCGCCCCCCCATCCCTCTCCG----------------------------------------------------------------------------------------------------------------------------------------------GCTCG-------------------------------------------------------------------------------------------------------------AG------TTCCGGCTCCAGCTC------CGGCA
droSec2 scaffold_44:20532-20794 - AGCAGCAGCAGACG--C-----ACCA----------------------------------------------------------------------------------------------G--------------------------CAACAGC-----------------------------------------AGCAACACCAGCAG---------CA---------------ACACCACCAACAGCAGCAGCAGCAACTAACCCAGCAGCAGCTGCAGCAGCAGC-------------------------------------AACAACAGCAGCAG--CAAC---AACATCTCCA-----------ACAGCA---------GCAACAC-------------------------------------------------------------------------------CA--------ACA--------G----------------------------------------------------------------------------------------------------------------------------------------------CAGCACCATCAGGCGGCTAACAAGTTGCTGATCATACCCAAGCCCATCGAATCGATGATGCCCAGTCCGCCGGACAAGCAGCAATTG---------------------------------------------------------------------------------------------------CAGCAGCAC--------------------------C---AG------------------------------------------------------AAGG--TG------------------------TTGCCGCCGCAGC-----------AG
droYak3 3L:8416361-8416591 - AGCATCAGCAGCAA---CAGC-------------AG---------------------------------------------------------------------------------------------------------------------------CTGCAACTGC--------------------------TGCAGAG------------------------------------TGTGCAACAGCAACAG-------------------------------------------CAG---------CAGC------------AACAACAGCAGCAGC--AGCAAC---ACCAGCA--------------------------GCAACAG--------------------------------------T------TGCTC---------------------GG------CAAC----------------------------------------------------------ATGTCGCAGACGGCAGCCTTGCCGCCGCTGAGCAGCT--------TGCCACTGCAAGTGGTGCACAATCTGCCGCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCCGGC--AACGGTGGCAGCAACGCGG----------------------------------------------------------------------------------------------------------GCAA------CAATGCCAGCAACAC------CAGCA
droEre2 scaffold_4690:14243347-14243591 + AGCAGCAGCAGCAG---CAGC-------------AG----------------CAGCTGGACCAGCGCAACAACCTGCATCAGCAAATCC--AT------------CACCA-CC---ACCA----------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAAC------AG----------------------------CAG---------CAGC------------AGCAACAGCAGCAGC--AGCAGC---AGCAGCA--------------------------------G----------------CAACAG-AAA---CAGCAGCAGC----------------------------------AGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AGCATATGCAGCA------------------------ACCATTTTCAC-------------------------------------------------------------CACCTCGTCCT----GGAAATTC-------------------------------------T------------------GG----C--AGCGGA-------------AACAGCGGTGGC-AG---CAGCAAC---A---------------------------------------------------------------------------------------GCACTAGTGCAGCAG------CGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGCAGCTGCAGACG--------AATAGCGATGGCACCGTG----------TG-------------------------------------CTTG-------GCCCCCATG----C--------AGGTAGATAACAGCAACACACCA-----------------------------------------------------------AACAA---CAACAGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAGCAACAC--AACC---AACAGCAGTAATAATAGTAGT-----------------A-----------------------------------G---CGGC-----------------------------------------AGCCCATCTGCTGCCG-------------------CGCCCACCTC---------------------------------------GCTGCTGGGCATCTCAGTAATCAACG-------------------CTGGCGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGGCCGGCGTCTCACTGGCAGCGGCGCTG--------------------------------------------------------------------------------------------------------------------GCGTCGCAGCAGCAG------CGGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................GTAATAATAGTAGT-----------------A-----------------------------------G---CGGC-----------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................................................................................................................................................................................................................................................................................................................................GCAACAC--AACC---AACAGCAGTAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...AGCTGCAGACG--------AATAGCGATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTCAGTAATCAACG-------------------CTG..................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATCTGCTGCCG-------------------CGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................A-----------------------------------------------------------AACAA---CAACAGCA------------------ACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.....................................................................................................................................................................................................................AACAGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
...............................................................................................................................................................................................................................................CAACAAC-------------------------------------------------------------------------------AACAACAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
........................................................................................................................................................................................................................AGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
droVir3
AGCAGTTACAGACG--------AATAGTGATGGCACCGTG----------TG-------------------------------------CTTG-------GCTCCCATG----C--------AGGTAGATAACAGCAACTCATCCAACAGCTCCAATA--------------------------------------GCGTAA---CGCGCAGCAATAGCA------------------ACAACAAC-------------------------------------------------------------------------------AACAACAATAACTG-----TAGC---GTCGGCA------GCG-----------------GCAGCAG--------------------------------------C-----------------------------------------AGCACG---GCTGCTG-------------------CGCCAGCTCC---------------------------------------GCTGCTGGGCATCTCAGTTATCAACG-------------------CTAACGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGCCGGCGTATCGCTGCCAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCAGCAA------TAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCAGCA............2112.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCA...............2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GTAA---CGCGCAGCAATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................AATAGTGATGGCACCGTG----------TG-------------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCAG..............2311.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACG-------------------CTAACGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGCCGGC...................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CAGCTCCAATA--------------------------------------GCGTAA---CGCGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AGCTCCAATA--------------------------------------GCGTAA---CGCGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCATCTCAGTTATCAACG-------------------CT...................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGCCGGCGTATCGCT...........................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GCGTCTCAGCAGCAA------T....2711.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACG-------------------CTAACGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGCCGGC...................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
............................GATGGCACCGTG----------TG-------------------------------------CTTG-------GCTCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGCCAGCGGCGCTA--------------------------------------------------------------------------------------------------------------------GC........................2111.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GGCA------GCG-----------------GCAGCAG--------------------------------------C-----------------------------------------AGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AACAAC-------------------------------------------------------------------------------AACAACAATAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CAGCAATAGCA------------------ACAACAAC-------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
AGCAGCTGCAGACG--------AACAGCGATGGCACCGTC----------TG-------------------------------------CTTG-------GCCCCCATG----C--------AGGTAGATAACAGCAATAGCCCCAA------------------CTCTTCCAATAGTGCCA--CG---------CGCACCACCAACAACAGCAA---CA---------------ACAACAACAAC----------------------------------------------------------------------------------------AACAC--CAAC---AACAATAATAATAATAGTAGT-----------------A-----------------------------------G---TAGT-----------------------------------------GGCTCA---GCTGCTG-------------------CGCCAACTTC---------------------------------------GCTGCTTGGCATCTCGGTGATCAACA-------------------CTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCTGCCAAGCTGGGCCGGCGCAGCGCAGCTGG---C---------------------T------------------------------------------------------------------TAGT--CA---------CAGC---AACA------GCTGGAGCTGGTG------CTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................A---CA---------------ACAACAACAAC----------------------------------------------------------------------------------------AACAC--CAAC---AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.05110
...............................................................................................................................................................................................................AACAGCAA---CA---------------ACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110
...........................................................................................................................................................................................................................................ACAACAACAAC----------------------------------------------------------------------------------------AACAC--CAAC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110
droWil2
AGCAATTACAAACA--------AACAGCGATGGAACTGTG----------TG-------------------------------------CCTA-------GCACCCATG----C--------AGGTACAA----------------------------------------------------GTC-GCAAGCGGCAACAACATCAATAA---------TA---------ACAGCCAT-ACAACAACAGCAGCAG----------------------------------------------------------------------------CAGCAGCTC-TCACC---AGCAGCGGCAGCAATAGCAGC-----------------A-----------------------------------C---AGGA-----------------------------------------GCAATA---ACCGCTCCCCCAGCCTTGCAAT---------------------------------------------GCT-------------ATCAATTGATAACTGCTA-------------------CTAGT-----GGAGC----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACA--GG------CGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................AACAACATCAATAA---------TA---------ACAGCCAT-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTA-------------------CTAGT-----GGAGC----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAC................2411.00100010
..........AACA--------AACAGCGATGGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................GCAGCGGCAGCAATAGCAGC-----------------A-----------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200020
.................................................................................................................................................................................................................................................ACAACAGCAGCAG----------------------------------------------------------------------------CAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
dp5
AGCAGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------AGCAATACCA---------------------------------------GCAGCAACAT-------------------------------------CAGCAA---CACTATCAGCAACATTATCAACAACAGCAGC---AGCAG--CAGC---AGCAACAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AGCACT----------------------------------------------------------------------------------------------------TGTACCAGCATC---ATCCC-------------------------------------------------------AGCCTGTCGTCGGTGCTGCCACCCGCTGTCGAGACGGTGGT---------------------GGA------------------------------------------------------------------------------------------GTTG-------------------------------C-------------------------------------------------------------------------AGT--TG---------CAACA---ACAGCTAGTGCAGCAGCAACAG------CAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................CAG--CAGC---AGCAACAGCA--------------------------GCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530200100000
.............G---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------AGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
...AGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................................GCAACAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
...........CAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
..................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGCAG--CAGC---AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.GCAGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
....................................................................................................................................................................................................................................................................................................................................CAGCAGC---AGCAG--CAGC---AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
..............................................................................................................................................................................................................................................................................................................................CAACAACAGCAGC---AGCAG--CAGC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
......................................................................................................................................................................................................................................................................................................................................GCAGC---AGCAG--CAGC---AGCAACAGCA--------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
....GCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
......AGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................CAACAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
....GCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................GCAG--CAGC---AGCAACAGCA--------------------------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000001
...AGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000100
..............................................................................................................................................................................................................................................................................................................................CAACAACAGCAGC---AGCAG--CAGC---AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..CAGCAGCAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510001000000
........CAGCAG---CAAC-------------AA---------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC--------------------------AGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000001000
droPer2
AGCAGCAGCAGCCG---CCGCT-----CTTGAAGAGTG---------------------------------GTCCGCCACCGCTGATCTTTGCCAGCTCCA----CAAATCTGTTGGCCAG--------------------------CAGCAGCAGCAACAGC-----------------------------------------AATCA---------GA------------------ACAACAACAGCGGCAA-------------------------------------------CAG------------------------------T--------------AGC---AACAGCA-----------ACAGTAATAGCA---------A----------------CCACA----GCGGCAG---CAAC------------------------------------------------------------------------------------------------------ATGATGCATGTGGCA---------------------------------------------------------------------------------------------------------AACATGCTGCCAATGCCACC-------ATTGC--------------------AGCCCCAGCAGCAGACGCAGCAGCC------------------------------------------------------------------------------GCC--A------------------------------------------------------------------------------------------------------CAGA--CG---------CAGCC---GCAGCAGGTGCCACAACTGCAG------CCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................ATCA---------GA------------------ACAACAACAGCGGCAA-------------------------------------------CAG------------------------------T--------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CA----GCGGCAG---CAAC------------------------------------------------------------------------------------------------------ATGATGCATGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................................................................................................................................................................................................CA---------GA------------------ACAACAACAGCGGCAA-------------------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................AATCA---------GA------------------ACAACAACAGCGGCAA-------------------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................G------------------------------T--------------AGC---AACAGCA-----------ACAGTAATAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGCAGCAGCC------------------------------------------------------------------------------GCC--A------------------------------------------------------------------------------------------------------C.........................................................1911.001010000
droAna3
AGGTGCAGCAGGCG--------GGAGACGATGGCAGCGGT----------CA-------------------------------------CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------TCGTTCGTGGCCGCTGCAGTGGCCG-CCTCGCAGCAGCAGCACCAGCAAC-------------------------------------AGCAGCAGCAGCAC--TCGC---AGCAACAGCA-----------ACAGCAGGCGCA---------C----------------CAGCA----GATGCCC---CACT------------ACGC---TGTGTCGGCGGT-G---------------------------------------------------CA---------------------------------------CATGCA--------GAGCCACCACCA-------------------CCAGC--AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGGC-GGC--AGCGGTGGCGGCGGCGCAG--------------------------------------------------------------------------------------------------------------------GCGCAGCACCACCAG------CAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......AGCAGGCG--------GGAGACGATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002010010
..........GGCG--------GGAGACGATGGCAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................GTTCGTGGCCGCTGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-----------ACAGCAGGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................CGGT----------CA-------------------------------------CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------TC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................GAGACGATGGCAGCGGT----------CA-------------------------------------CATG-------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................................................................................................GCAGCAGCAC--TCGC---AGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------------CATGCA--------GAGCCACCACC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......GCAGGCG--------GGAGACGATGGCAGCGGT----------CA-------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......AGCAGGCG--------GGAGACGATGGCAGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGGC-GGC--AGCGGT...........................................................................................................................................................2011.001010000
.......GCAGGCG--------GGAGACGATGGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................................................................................................................................................................................................................................................................................................................................................GCAACAGCA-----------ACAGCAGGCGCA---------C----------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................GGT----------CA-------------------------------------CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................GT----------CA-------------------------------------CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------TCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....GCAGCAGGCG--------GGAGACGATGGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................AAC-------------------------------------AGCAGCAGCAGCAC--TCGC---AGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......GCAGGCG--------GGAGACGATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................ACAGCA-----------ACAGCAGGCGCA---------C----------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................CATG-------AGCGCCGC------------------------------C---------------------------------------------------------------------------------------------------TCGTTCGTGGCCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-G---------------------------------------------------CA---------------------------------------CATGCA--------GAGCCACCAC..........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......AGCAGGCG--------GGAGACGATGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................................................................................................................................................................................................................................................................................................................................................................A-----------ACAGCAGGCGCA---------C----------------CAGCA----GATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................GTGGCCGCTGCAGTGGCCG-CCTCGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
............................................................................................................................................................................................................................................................................................CAAC-------------------------------------AGCAGCAGCAGCAC--TCGC---AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................................................................................................CGCCGC------------------------------C---------------------------------------------------------------------------------------------------TCGTTCGTGGCCGCTGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-GGC--AGCGGTGGCGGCGGC..................................................................................................................................................2020.501000001
........................................................................................................................................................................................................................................................................................CCAGCAAC-------------------------------------AGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153001002
.......................................................................................................................................................................................................................................................................................ACCAGCAAC-------------------------------------AGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153010002
........................................................................................................................................................................................................................................................................................CCAGCAAC-------------------------------------AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
...............................................................................................................................................................................................................................................................................GCAGCAGCACCAGCAAC-------------------------------------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.081100000
.........................................................................................................................................................................................................................................................................................CAGCAAC-------------------------------------AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
droBip1
AGCAGCAGCAGGTC--------GCCAC-----------------------------------------------------------------C-------------G---------CCCAC--------------------------CAGCAGCAACACCAAC-----------------------------------------AGCAG---------CA------------------GCAGCAACAACAACAG----------------------------------CAG------CAA------------------------------C--------------AAC---AACAGCA-----------ACAGCAGCAGCA---------A----------------CAACA----CCAGCAG---CAAC------AG--------------------------------CA--------GCA--------G------------------------CACCAACA----------------------------------------------------------------------------------------------------------ACAACAG---CA--------------C---------------------------------------------------------------------GCC-GCCGTAGCCG-------CCGCCGCAGCCGCCGCCTCGCATCCCCATGTTCATGCCGCTCACGCCCTC-GCCCACGCCCATGCCCCCCAGCTGG---C---------------------G------------------------------------------------------------------CAAC--TG---------CAGC---CCGG-----CCTGCAAGCAGTGG------CGGTASizeHit CountTotal NormTotal
No Reads
droKik1
AGGAGCCACAGCCG--------CCCAGTGCCAGACCC-TA-------------------------------------------------CACA-------GCCCCCAGCA-CGCCTCCCAA--------------------------CAGCAGCAGCAGCAGC-----------------------------------------AACAG---------CA------------------------ACAACAGCAG-------------------------------------------CAG------------------------------CAGCAAC--------------AC---CA-----------GCAGCAGCAGCA---------A----------------CAACA----GCAGCAG---CAAC------------------------------------------------------------------------------------------------------AT--CGCGGACTGAAGCG-------------ATCGGGAAGCGATTGCTACGAGGATC--------------------------------------------------------------------------------ACC-------ATCGATCCGCC-------------------------------------------------------------------------------------------------------------GGCGGACTGACGCTC--------------------------------CAG---GGA------------------------------------------------------------------CT---------C---GACAG------CGTCGCCAGCAGCGC------CGGCGSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGCG-CCG--------CACGGCGGGGAGCTCG---------------------------------------------------GGCG-------GCCACCA---------GCCAA--------------------------CAGCAGCAGCAGCAGC-----------------------------------------AGCAG---------CA---------------ACAACAGCAACAGCAGCAG-------------------------------------CAGCAG---CGC--------------------------------------TACC---AACAGCAGCA--------------------GCA---------G----------------CAACT----GCG---G---CAGCAGCACCAGCAAATGTCGCA---------GAT-G---------------------------------------------------TC---------------------------------------GCAGCAGG--------CCCACTATCCCCAGCAGC---AGTCTAGTCTGG-----------AGCATGTGCGGCGAC--------------------------------------------------------------------------------AGCAGCA------------------------------------------------------------------------------------------GACG-------------------------------C-AGCAG---CAACAGCA-----------------------------------------------------------------------------GCAG------CAGCAGCAGCATCAG------CAGCASizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGCAGCAGCAG---CAGGA-----CCAGCGCACCA---------------------------------CTCTGCATCCGCAGATCC--AC------------CACCA-CC---ACCAA--------------------------CAGCAGC-----------------------------------------AG---------------------CA---------------------GCAGCAGCAGC----------------------------------------------------------------------------------AGCAG--ATGCAAC---ATCAGCA-----------GCA------------GCAGCAGCAG-------------CAA-------------------------------TCCTCG-A---------GATCGG------CGGCCAGTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCAC-------------------------------------------------------------CACCTCGTCCT----GGAAATCC-------------------------------------T------------------GG----T--AGCGGC-------------AACAGCAGCAGC-GG---CAGCAAC---A-------------------------------------------GC---------AGTAA--TT---------CAGCAGCAG------CAGCAGCAGCAGCAG------CGGCASizeHit CountTotal NormTotal
No Reads
droRho1
AACAAGCGAAAGC---------AACAACAACAACACTGAGGGCGTTGGCTCA-------------------------------------C---------------CAGG----C--------AACCACAC-------------------ACAATCAC-------------------------ACC-AACAACAGCAGCAA------------------CAGCAACAACAGCTGC-------------------------------ATCACAACAA----------------------------------CAAC--------------------------------------ACCAGCA-----------------------------ACAACAGCAATTGCCA----CCACAGTCAC---CAGCAGCAAC----------------------------------AACAAC-------------------------------------------------------------------------------------------------------------------------------------------------AACACATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCCCCGCAACATCAATACCAACAACACC----AAATA---T-TACACCAACAAC---A-----------------------------------------------------------------------------ACAATTGCCAAATCACCACCATCAT------CATCASizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAGCAGCAG---CACC-------------AT----------------CATCATCAC----------------------------CACA-------GCCACCA-------------G--------------------------CAGCAGC-----------------------------------------AGCAACACCAGCAA---------CA------------------GCAGCAACAACAGCAG-------------------------------------------CAG------------------------------C-----------AGCAAC---AGCAGCA--------------------GCACCAGCAGCAGCAACACGC-CCAGCAGCTGCAG-CAC---CAGCAGCTGC----------------------------------AGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AGCACGTGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------AACACCAG---C-AGCAG---CAACACCA-----------------------------------------------------------------------------CCAC------CACCAGCAACACCAGCAGCTGCATCASizeHit CountTotal NormTotal
No Reads
droTak1
AGCAGCAGCGACTA---CGGC-------------AATGTG-------------------------------------------------CGCA-------GTCCCCA-------------G--------------------------GAGCCGC-----------------------------------------AGCATCACCAGTTGCAGCAGCAGCA------------------ACAGCAAC-------------------------------------------------------------------------------AACAGCAGCAGCAC--AATC---AGCAGCAGCA--------------------------GCAGCAG--------------------------------------C-----------------------------------------AGAACA-------------------------------------------------------------CGTACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTCAACAGCAAGTGGAACACTCCGCTCAAGACGGAGAACA-------------------------------------------------------ATGC-GGC--GTCGGT-------------ATCGCCGGCGGCCAC---CATCAAC------------------------------------------------------------------A---------TACCC----------ACATATCCGCAGCAG------AGCCASizeHit CountTotal NormTotal
No Reads
droEug1
AGCAGTTGCCGCCG---CCCT-------------AG----------------CCGCC--GCCGCCGC----------------------CTCT-GCC---TCCGCCAGCG-TTTCAGCCAG--------------------------CAGCAGCAGCAGTAAC-----------------------------------------AGCAA---------CA---------------ACAACAACAACAGCAGCAG-------------------------------------CAACAA---CGC--------------------------------------CACT---AGCAACACCAACAATAACAGC-----------------A-----------------------------------G---CAGCAGCCCCAG--------------------------------CA--------GCA--------G------------------------CAGCAATC----------------------------------------------------------------------------------------------------------ACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCTCAATTTGAGCGGAGGATCTCTTTCTCCTAGCCATTTGAGCCAGCATCTGGGCCAGTCGCCCCACTCGCCGGTCTC---CTCG-------TCGTCGCCCTTCCAG------CAGCASizeHit CountTotal NormTotal
No Reads
dm3
AGCAACTGAT-CTGGGG-----AGCAACTACAA-TCCGTT----------TG-------------------------------------CCCA-------G----CAGGT-CCTTGCCCAG--------------------------CAGCAGCAGCATCAGC-----------------------------------------AGCAG---------CA---------------GCAACAGCACCAGCATCAG----------------------------------CAC------CAGCAG------CAAC---------ACCAACAGC---AGCAGC--AGCAGC---AGCAGCA--------------------------GCAACAG-------------------------------------------------------------------------------CA--------ACA--------GTCCTTGCAATTTCATGCCAATCCC---------------------------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCC-------------------------------------T------------------GGC------GGC----------------AATA--------------------------------------------------------------------GCTGGGAAAGTAAATT--CT---------CGGCGGCAG------CTGTTGCAGCAGCGG------CAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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....................................................................................................................................................AGCAGCAGCATCAGC-----------------------------------------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................C---AGCAGCA--------------------------GCAACAG-------------------------------------------------------------------------------CA--------ACA--------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAGC--AGCAGC---AGCAGCA--------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AG--------------------------CAGCAGCAGCATCAGC-----------------------------------------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................AGC-----------------------------------------AGCAG---------CA---------------GCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCA--------------------------GCAACAG-------------------------------------------------------------------------------CA--------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................AGCAGCAGCATCAGC-----------------------------------------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGC--AGCAGC---AGCAGCA--------------------------GCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAGCAG------CAAC---------ACCAACAGC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................ACCAACAGC---AGCAGC--AGCAGC---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCATGCGCAACAT---CATC-----------------------------TG-------------------------------------CACT-------TGTCCCATC----A------GCAG--GCGCAACAGCAGCACATGCAA------------------CACTTGA-----------------------------C------------------------------------ACAGCAACAGCAGCAG----------------------------------CAG------CAGCAA------CAAC---------AACAGCAGC---AGCAGC--AACAGC---AGCAGCA--------------------------GCAACAA-------------------------------------------------------------------------------CA--------ACA--------G------------------------CCGCAACAGCAGCAACATGACTT---------------------------------------CCT--------------------CAGC-----GCCGC----------------------C--------------ACCCTGCTGTCCGCCCCCCCATCCCTCTCCG----------------------------------------------------------------------------------------------------------------------------------------------GCTCG-------------------------------------------------------------------------------------------------------------AG------TTCCGGCTCCAGCTC------CGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................AGC--AACAGC---AGCAGCA--------------------------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................................................C---AGCAGC--AACAGC---AGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................AGC---AGCAGC--AACAGC---AGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................AGCAA------CAAC---------AACAGCAGC---AGCAGC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCA--------------------------GCAACAA-------------------------------------------------------------------------------CA--------ACA--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
..................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGCAGC--AACAGC---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
droSec2
AGCAGCAGCAGACG--C-----ACCA----------------------------------------------------------------------------------------------G--------------------------CAACAGC-----------------------------------------AGCAACACCAGCAG---------CA---------------ACACCACCAACAGCAGCAGCAGCAACTAACCCAGCAGCAGCTGCAGCAGCAGC-------------------------------------AACAACAGCAGCAG--CAAC---AACATCTCCA-----------ACAGCA---------GCAACAC-------------------------------------------------------------------------------CA--------ACA--------G----------------------------------------------------------------------------------------------------------------------------------------------CAGCACCATCAGGCGGCTAACAAGTTGCTGATCATACCCAAGCCCATCGAATCGATGATGCCCAGTCCGCCGGACAAGCAGCAATTG---------------------------------------------------------------------------------------------------CAGCAGCAC--------------------------C---AG------------------------------------------------------AAGG--TG------------------------TTGCCGCCGCAGC-----------AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTG---------------------------------------------------------------------------------------------------CAGCAGCAC--------------------------C---AG------------------------------------------------------AAGG--T...................................................2212.0020020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTCCGCCGGACAAGCA...................................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................CAACAC-------------------------------------------------------------------------------CA--------ACA--------G----------------------------------------------------------------------------------------------------------------------------------------------CAGCACCAT..........................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---------------------------------------------------------------------------------------------------CAGCAGCAC--------------------------C---AG------------------------------------------------------AAGG--TG------------------------TT........................2311.0010010
...........................................................................................................................................................................................................................................ACACCACCAACAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010010
...................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GCAACAC-------------------------------------------------------------------------------CA--------ACA--------G----------------------------------------------------------------------------------------------------------------------------------------------CAGC...............................................................................................................................................................................................................................................................................................................................................21120.0810001
...................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GCAACAC-------------------------------------------------------------------------------CA--------ACA--------G----------------------------------------------------------------------------------------------------------------------------------------------CA.................................................................................................................................................................................................................................................................................................................................................19180.0610001
............................................................................................................................................................................................................................................CACCACCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
.......................................................................................................................................................................................................................................................................................AGCAGCAGC-------------------------------------AACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
droYak3
AGCATCAGCAGCAA---CAGC-------------AG---------------------------------------------------------------------------------------------------------------------------CTGCAACTGC--------------------------TGCAGAG------------------------------------TGTGCAACAGCAACAG-------------------------------------------CAG---------CAGC------------AACAACAGCAGCAGC--AGCAAC---ACCAGCA--------------------------GCAACAG--------------------------------------T------TGCTC---------------------GG------CAAC----------------------------------------------------------ATGTCGCAGACGGCAGCCTTGCCGCCGCTGAGCAGCT--------TGCCACTGCAAGTGGTGCACAATCTGCCGCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCCGGC--AACGGTGGCAGCAACGCGG----------------------------------------------------------------------------------------------------------GCAA------CAATGCCAGCAACAC------CAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGAGCAGCT--------TGCCACTGCA..................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTC---------------------GG------CAAC----------------------------------------------------------ATGTCGCAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................A--------------------------GCAACAG--------------------------------------T------TGCTC---------------------GG------CAAC----------------------------------------------------------ATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................................................................................................................GCAACTGC--------------------------TGCAGAG------------------------------------TGTGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCGCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCCGGC--AACGGTG..........................................................................................................................................................3011.00100010000000
..............................................................................................................................................................................................................................................................................................................................................AGCAGC--AGCAAC---ACCAGCA--------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.09100100000000
.........................................................................................................................................................................................................................................................AACAG-------------------------------------------CAG---------CAGC------------AACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.........................................................................................................................................................................................................................................................AACAG-------------------------------------------CAG---------CAGC------------AACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
droEre2
AGCAGCAGCAGCAG---CAGC-------------AG----------------CAGCTGGACCAGCGCAACAACCTGCATCAGCAAATCC--AT------------CACCA-CC---ACCA----------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAAC------AG----------------------------CAG---------CAGC------------AGCAACAGCAGCAGC--AGCAGC---AGCAGCA--------------------------------G----------------CAACAG-AAA---CAGCAGCAGC----------------------------------AGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AGCATATGCAGCA------------------------ACCATTTTCAC-------------------------------------------------------------CACCTCGTCCT----GGAAATTC-------------------------------------T------------------GG----C--AGCGGA-------------AACAGCGGTGGC-AG---CAGCAAC---A---------------------------------------------------------------------------------------GCACTAGTGCAGCAG------CGGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GGAAATTC-------------------------------------T------------------GG----C--AGCGGA-------------AACAGCGG......................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGA-------------AACAGCGGTGGC-AG---C...........................................................................................................................2111.0011000000
......................................................GCTGGACCAGCGCAACAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
......................................................................................................................................................................................................................................................................................................................................................AGCAGC---AGCAGCA--------------------------------G----------------CAACAG-AAA---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
..................................................................................CAAATCC--AT------------CACCA-CC---ACCA----------------------------------------------------------------------------------------------------------------------------ACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................G----------------CAACAG-AAA---CAGCAGCAGC----------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC-------------------------------------T------------------GG----C--AGCGGA-------------AACAGC........................................................................................................................................2011.0010001000
..................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------------------G----------------CAACAG-AAA---CAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------------------------T------------------GG----C--AGCGGA-------------AACAGC........................................................................................................................................1811.0010100000
...................GC-------------AG----------------CAGCTGGACCAGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGA-------------AACAGCGGTGGC-A................................................................................................................................1911.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA------------------------ACCATTTTCAC-------------------------------------------------------------CACCTCG..................................................................................................................................................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCT----GGAAATTC-------------------------------------T------------------GG----C--AGCGGA-------------..............................................................................................................................................2411.0010001000
...........................................................................................AT------------CACCA-CC---ACCA----------------------------------------------------------------------------------------------------------------------------ACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------G----------------CAACAG-AAA---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................AACAG-AAA---CAGCAGCAGC----------------------------------AGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000100
.................................................................................................................................................................................................................................................................................................................................................AGC--AGCAGC---AGCAGCA--------------------------------G----------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000050
...................................................................................................................................................................................................................................................................................................................................................................GCA--------------------------------G----------------CAACAG-AAA---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000010
.........................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCA--------------------------------G----------------CAACAG-AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000100
...........................................................................................................................................................................................................................................................................................................G---------CAGC------------AGCAACAGCAGCAGC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.......................................................................................................................A----------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAAC------AG----------------------------CAG---------CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001000
....................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAAC------AG----------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.................................................................................................................................................................................................................................................................CAAC------AG----------------------------CAG---------CAGC------------AGCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010
........................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC--AGCAGC---AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000
...........................................................................................................................................................................................................................................................................AG----------------------------CAG---------CAGC------------AGCAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100
.......GCAGCAG---CAGC-------------AG----------------CAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
....................................................................................................................................................................................................................................................................C------AG----------------------------CAG---------CAGC------------AGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
..........................................................................................................................................................................................................................................................GCAGCAGCAAC------AG----------------------------CAG---------CAGC------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000
.......................................................................................................................A----------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAAC------AG----------------------------CAG---------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000010
.....................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC--AGCAGC---AGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000010
........................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCA--------------------------------G----------------CAACAG-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
...............................................................................................................CC---ACCA----------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010
..........................................................................................................................................................................................................................................................GCAGCAGCAAC------AG----------------------------CAG---------CAGC------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000

Generated: 05/17/2015 at 10:56 PM