ID:

dmo_736

 Coordinate:

scaffold_6473:11084281-11084560 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -33.3 -33.3

Flybase annnotation

exon [dmoj_GLEANR_16509:3]; exon [dmoj_GLEANR_16509:2]; CDS [Dmoj\GI15798-cds]; CDS [Dmoj\GI15798-cds]; intron [Dmoj\GI15798-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+
(CA)nSimple_repeatSimple_repeat+
(CAA)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_6359:3259742-3259762 +
  2. scaffold_6473:2310731-2310751 +
  3. scaffold_6473:8182471-8182491 +
  4. dmo_736  scaffold_6473:11084537-11084557 +
  5. scaffold_6473:12922586-12922606 +
  6. scaffold_6496:454633-454653 +
  7. scaffold_6496:3015830-3015850 +
  8. scaffold_6496:5031222-5031242 +
  9. scaffold_6496:22481863-22481883 +
  10. scaffold_6500:1974245-1974265 +
  11. scaffold_6500:4493137-4493157 +
  12. scaffold_6500:6885346-6885366 +
  13. scaffold_6500:16027676-16027696 +
  14. scaffold_6500:17328001-17328021 +
  15. scaffold_6500:23394200-23394220 +
  16. scaffold_6500:27085547-27085567 +
  17. scaffold_6540:9547778-9547798 +
  18. scaffold_6680:2711004-2711024 +
  19. scaffold_6680:16400524-16400544 +
  20. dmo_2527  scaffold_6680:18264105-18264125 +

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACAGACGGTGCAAACGGTGACGCCGGCCACTAATCAAACCACCAGCCAAGTGAGTAATCCACAAATCTCTCCAGACTCTCTCACAACAAAGCGAAAGAGGAAGAGAGTGAGAGAGAGAGAGAGAGAAATCGGGGATGGGAGATGGGGGAATCATATAATGTACAAATAATATAATACGGTATTCCATTGCATTTATGCGCACCCATTTCGCGTTCCCTACTAACACACACACACACACTCACACACTTACACACGCACACATCCACACTCCATGCGATCACACCACTAACCCACAACAACAACAACAACAACAACAACAGCAACTGCAGCCACAGCAGGTGAACGTGGTGAAGATCAACAGCGCTGGCACAGTGATCAC
*********************************************************************************************************************************..(((((((.((((((((.....((((.((((((.....(((((......)))))....))))))))))....)))))))).)))))))....................................((((...............))))..................................................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V110
male body		 M046
female body
..................................................................................................................................CTGTGATGGGAGATGGGGGAATC................................................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0
......................................................................................................................................GCTGGGTGATGGGGGAATC................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0
..............................................................................................................................................................................................................................................................................................................................................AGAAGGTGAACCTGGTGAAG.......................... 20 2 1 1.00 1 0 0 1
..................................................GTGAGTAATCCACAAATCTTTCCAGACTC............................................................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0
.................................................................................................................................TCGGGGATGGGAGATGGGGGAAT.................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
...................................................................CTCGCCAGACTCTCTCACAAC.................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0
.............................................................................................................................................................................................................................................................................................................................................CAGAAGGTGAACCTGGTGAA........................... 20 2 1 1.00 1 0 1 0
.............AACGGTGACGCCGGCCACTAATCAAACCA.................................................................................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................................................................................................................................AGAAGGTGAACCTGGTGAAGT......................... 21 3 3 0.67 2 0 2 0
...............................................................................................................................................................................................................................................................................................................................................GAAGGTGAACCTGGTGAAGT......................... 20 3 7 0.29 2 0 2 0
............................................................................................................................................................................................................................................................................................................................................GCAGAAGGTGAACCTGGTGAA........................... 21 3 5 0.20 1 0 0 1
..................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAACTG..................................................... 21 0 20 0.10 2 0 0 2
...........................................................................................................................................................................................................................................................................................................................................AACAGCAGGTGGACGTGG............................... 18 2 14 0.07 1 0 1 0
........................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAACAACAGCAAC....................................................... 29 0 20 0.05 1 1 0 0
....................................................................................................................................................................................................................................................................................................CACAACAACAACAACAACAACAACAAC............................................................. 27 0 20 0.05 1 0 0 1
...................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAACTGC.................................................... 21 0 20 0.05 1 0 0 1
......................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACTGCAGCC................................................ 22 1 20 0.05 1 1 0 0

Anti-sense strand reads

ATGTCTGCCACGTTTGCCACTGCGGCCGGTGATTAGTTTGGTGGTCGGTTCACTCATTAGGTGTTTAGAGAGGTCTGAGAGAGTGTTGTTTCGCTTTCTCCTTCTCTCACTCTCTCTCTCTCTCTCTTTAGCCCCTACCCTCTACCCCCTTAGTATATTACATGTTTATTATATTATGCCATAAGGTAACGTAAATACGCGTGGGTAAAGCGCAAGGGATGATTGTGTGTGTGTGTGTGAGTGTGTGAATGTGTGCGTGTGTAGGTGTGAGGTACGCTAGTGTGGTGATTGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGACGTCGGTGTCGTCCACTTGCACCACTTCTAGTTGTCGCGACCGTGTCACTAGTG
*****************************************************..(((((((.((((((((.....((((.((((((.....(((((......)))))....))))))))))....)))))))).)))))))....................................((((...............))))..................................................********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
 V110
male body
.......................................................................................................................................................................................................CGTGGGTAAGGCACAAGGGAG................................................................................................................................................................ 21 3 1 2.00 2 2 0 0
.............................TGATTAGTCAGGTGGGCGGT........................................................................................................................................................................................................................................................................................................................................... 20 3 1 1.00 1 0 1 0
.........................................................................................................................................................................................................TGGGTCGAGTGCAAGGGATGA.............................................................................................................................................................. 21 3 2 1.00 2 1 0 1
.............................................................................GGAGAGTGTCGTTTCGCT............................................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0
.........................................................................................................................................................................................................TGGGTAAGGCACAAGGGAG................................................................................................................................................................ 19 3 15 0.20 3 0 0 3
.........................................................................................................................................................................................................TGGGTCGAGTGCAAGGGATG............................................................................................................................................................... 20 3 5 0.20 1 0 0 1
.............................................................................................................................................................................................................................................................................................................TTGTTGTTGTTGTTGTTGTCGTTGACG.................................................... 27 0 13 0.08 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:11084231-11084610 + dmo_736 TACAGACGGTGCAAACGGTGACGCCGGCCAC-----TAATCAAACCACCAGCCAAGTGAGTAATCCACAAATCTCTCCAGACTCTCTCACAA-CAAAGCGAAAGAG-------------------------------------------------------------------------------------------------GAAGAGAGTGAGAGAGAGAGAGAGAG--------------------AAATCGG--GGATGGGA-----GATGGGG--------G---AATC--AT--------------------ATAATGTACAAATAA--TATAATA------------CGGTATTCCATTGCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGCACCCATTTCGCGTTCCCTACTAA-------------------------CACACAC--A----------CACA-----CACTC----AC---------ACACTT-----AC---------------------------------------------------------------------------ACAC-------------------GCACACATCCACACTCCATGCGATCACACCACTAAC--------------------------------CC-------------------------------------A-------------------------------------------------------CAACAACAACAACAACAAC------AACAAC-----------------------------------AGCAACTGCAGCCACAGCAGGTGAACGTGGTGAAGATCAAC-AGCGC----------------TGGCA--------------CAGTGATCAC
droVir3 scaffold_12970:10373739-10374063 - dvi_13912 TACAAACGGTGCAAACGGTGACACCGGCAAC-----CAATACAAACACCAGCCAAGTAAGTATAC----------------------------------------------------------GCCAAGGTGGC----AGGCATAGTTAGGGGA-------------------------------------CACTAA---------GT----A---------TT-----TCGATGCTTCTCAAACAAAAAAAAAAA--AAAAAAAA-----AAACAAA----------------CG--------AA---------------ATGTTTAATTAA-----------TGTTTATACACGGGATTCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAACACACAACACATC---TTCAC-----------------------------------------------------------------------------------------CCTTTTC---------ATA---------CTTAACT---------AAT-------------------AC--------------------------------ACAC----------AACATTACA----------------------------------------TT-TGC----A----------------------------------------------------------CAACAACAACAACAAC------AACAAC-----------------------------------ATCAACTGCAGCCTCAACAGGTGAACGTGGTGAAGATCAAC-AGCGC----------------TGGCA--------------CCGTGATCAC
droGri2 scaffold_7974:5885-6176 + CACAACA----------------------------------------------------------------------------------------GAGAGAGGGAGAGATAGAGAGAGATAGAG-------------------------------------------------------------------------------------------------ATAGAGAT------------------AGAGATAGA--GATAGAGA-----GAGAGAGAG------------CT-----------------------------------------------------------------TCCCACATCAATTAAGTTCATAGACCGTTTGTTCTCTGGGCAACACGCATACGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAG------------------------ACCCGACCG----------AAATAGCCACACACAC-----ACACACACACACATATAT-----------CAGGCATCATCTAT------------------------------------------------------------------------------------------------------------------------CTATA--------------------------------TGTATATGCAACATA-----AACGTGCAGCAACTAACAACTAAATTTCATTAA-GCCGCATCG------------------C------ACAAATT-----------------GAACTACAACA---------GGCGG--------------------------------------C----------------GGCAA--------------CGGTGGTGGT
droWil2 scf2_1100000004909:8738372-8738756 + TGATGCTGATGCTGATGATGATGATGATGATGACGATGATGATGCCGATGCCGA--TGAGAATGA-----------------------------------------------------------TTT-----------------------------------------------------------GGATGATCTCGAAGAACAGCAGCAGCAGCAGCAGCAACAACAA------------------CAG-ATTGTCTCAACTAGATTGGCAACAAGC--------GGATCATC--AC--------------------ATAC-------TGTA--AGCAATAGA--------------------------------------TTCTTA------------------------------------------------------TTCT----------------------------------------TTATTGTAA------C------------------------TAATCATTGA-------------------------------AT--------TTACTTTTCTAAATATAAATTTCATATATCCCATCCACATATAA--T----------C-------------------------------------------------------ATCATCTACTAAT-----A-------------------------------------------------------------------------------------------TATTACGCATAC----------CACGCCACA----------------------------------------TT-------CACATT---------------------------------------ACAAAATCCTCAAAATAGCAGCAGCAGCAGC------AGCATC-----------------------------ACC---AG---CAACAACAACAACAAGTGAATGTGGTGAAAATTAAT-AGCGC----------------CGGCA--------------CTGTGATCAC
dp5 XL_group1e:4086060-4086416 - TCCACACAGTGACAACAATGACGCCACCGTC-----------AGGGAACAGCAATGTGAGTATGA-----------------------------------------------------------CCC-----------------------------------------------------------AGTA----------------------------------------------------------------------------------------------------GGCTCC--------CAATCCCGACCAAT-----TCCCA------------------TTTCTGATCGGCGT---------T-------CAGCGGCAGCGCGACGTCTGGGTTTCACGGCTTGACAAGG---------CGCACGAAAACTAAT-CTCTGTCTGGTCCATCCTGCATCCCCCCATTCCCATC--CATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG-GTTCATCCAATCACTCCCATTCGATTCCACTA---------------------------------------------------------------------ACCCAACATTTGATCCATT---------------CA----ATTAACTAACCGTCAAACTCCCACCT----CCAACATT----------------------------------------------------------------------------------------------------GAACTCCAACG---------AACAGCAGCCGCAGCAGGTCAATGTGGTGAAGATCAAC-AGCGC----------------CGGTA--------------CGGTGATCAC
droPer2 scaffold_17:1027390-1027746 - TCCACACAGTGACAACAATGACGCCACCGTC-----------AGGGAACAGCAATGTGAGTATGA-----------------------------------------------------------CCC-----------------------------------------------------------AGTG----------------------------------------------------------------------------------------------------GGCTCC--------CAATCCCGACCAAT-----TCCCA------------------TTTCTGATCGGCGT---------T-------CAGCGGCAGCGCGACGTCTGGGTTTCACGGCTTGACAAGG---------CGCACGAAAACTAAT-CTCTGTCTGGTCCATCCTGCATCCCCCCATTCCCATC--CATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG-GTTCATCCAATCACTCCCATTCGATTCCACTA---------------------------------------------------------------------ACCCCACATTTGATCCATT---------------CG----ATTAACTAACCGTCAAACTCCCACCT----CCAACCTT----------------------------------------------------------------------------------------------------GAACTCCAACG---------AACAGCAGCCGCAGCAGGTCAATGTGGTGAAGATCAAC-AGCGC----------------CGGTA--------------CGGTGATCAC
droAna3 scaffold_12929:1696546-1696745 - AGAGA-G---------------------------------------------------------------------------------------------AGAGAG-------------------------------------------------------------------------------------------------AAAGCGAACGAGAGTGGGAGGGAGAG--------------------A---AGA--AGGCAGGC-----GATGGAA----------------CA--------G-------------------------------------------------------------------------------AACC------------------------------------------------------CTTT----------------------------------------TGTAACTTCTATAGA------------------------------------------------------------------GA-----------------------------------CTGCAGC---CGCAC--ACAC-TCGCACTAACACACACT--------------------------------C----ACACACACACAC-----------CATCCCCCACTC------------------ACACTCACCTATTTCC-----------------------------------------------------------ACAC----------TCATTCACA----------------------------------------CA-------CACACT-------------------------------------------------------------------AGAAGACAC---ACT-----------------------------------AGC---C---------------------------------------------------------------------------------AACA
droBip1 scf7180000396543:345232-345529 + AAGAGACC-----------------------------------------------------------------------------------------------GAG-------------------------------------------------------------------------------------------------AAAGGGACAGAGAAAGGGACAGAGAA------------------AGAGAGAGG--GAACGGGA-----GAGGGAG----------------CA--------AAGTATTAGCTCAT-----CCATG------------------CGTCTGAGTGGAAG---------T-------C--CTGCATCGCCACATTTGGGCGCC---------------------------------------------------------------------------------------------------------------------------------------------------------ACCATCGTCCAGACCCATCATCTTCA----CCAGCAACTCAC-------------------------C----------CAGC-----CCCTGA----CCC--TCCGCA------------------------------------AGAGCA-GTCCGCCCACGGAGCACCTGCTGAGTCAGTCC---------------------------------------------------------------------ATGCAACATCTGACGC-------------------A-------------------------------------G-------------------------------------------------------CAGCAGCAACTGCATCTGC------ACCACCTCC----------------------------------------------------------TCGGCCAGCAGCAAC-AGCAA----------------CAGCA--------------GCAGCAGCAA
droKik1 scf7180000302230:429950-430195 + GAGAGGG---------------------------------------------------------------------------------------------AAAGAG-------------------------------------------------------------------------------------------------ATCGGGAGCGGGAGAGGGAA------------------------------CGG--GAGCGGGA-----GCA-CTT--TCGGGAG---CGTC--AC--------------------TCGC-----CACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CTCACTACCACCATCCCGCCATGCCGC---CCCAC--CT--------------------------------------------------------------------------GCTAGC-----ACACTTT---------CCA-------------------------CCC-------------------GCCC--------------------------------AC----------TATGTCGCC-----------CT-------------------------------------G-------------------------------------------------------CAGCAGCAACAGCAACAGC------AACAGCAGCAGGCGCAGCAGCAAC-----------CCCATCCGC---ATCAACT-------GCAAATGGAGCGAGAGCGATT-GGAGG--CAC-----------T-GCA--------------TCGACACGGC
droFic1 scf7180000454045:192429-192782 - CAAAGAG---------------------------------------------------------------------------------------------AAAGAG-------------------------------------------------------------------------------------------------AAAGTAAGTGGGAATGAGAATGAGAA------------------AGAGATA----------GA-----GATAGAG-------AG---GGCTGCGCAGAGTCAACGATTAGCTAATAAGA-----CGATTGGCAGTGGCAA-AC------------TTTCGCCATTGGCCACTTTGTGAAATTGTTTGCCATA-----------------------------------------------T----------------------------------------------TTGCAG------------------------------------C-----------------------TGCTGAAACTTTAT--------CGGCCGTGCCAGCACACACATACAGCTACACAC-----ACAC--ATGATACACATGGAT---------------------------------------------------------------------------------ATACCACTACTCGCGCAGACTAACTCGCCATCACGC---------------------------------------------------------------------ACACA---------------CG---AACTAATCAAATAAACTGAACCAACTT----GAGACGATGAA----------------------------------------------------------CACAGCAGCAACAGC---AAC-----------------------------------AGC---A-----------------------AGAGAGTCAAC-AGAACGGAGC-----------TGG-----------------ATGGGCTAT
droEle1 scf7180000490579:838063-838269 + ACAGGCC----------------------------------------------------------------------------------------GAGAGAAGGAGAGAGAGAGAGAGAGAGCG-------------------------------------------------------------------------------------------------ACAGAGAG------------------AGTGGGTGG--GAGCGAGA-----GAGAGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCT----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ATACTGCGCACT--------------C----AT--------------------------------------------------------------------------------------------------------------------------AC--------------------------------AC-------------------GCTGCTCTGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AAC---A---------------------------------------------------------------------------------GCAA
droRho1 scf7180000780143:31615-31790 - AGAGC-G---------------------------------------------------------------------------------------------GAAGAG-------------------------------------------------------------------------------------------------AGAGTGGGTGGGAGC--------------------------------------------GAGA-----GAGAGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCT----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACT--------------T----AT--------------------------------------------------------------------------------------------------------------------------------ACAC------------------------AC-------------------GCTGCTCTGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AAC---------------------------------------------------------------------------------------AG
droBia1 scf7180000301760:1124164-1124491 - TCCACACGGTCACGACCATGACGCCGCCGAC-----------GGGCAACAGCAACGTGAGTATCC-CCAGGGATGTTGGGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGGGGTTTGGAAAGGGTATTTCTGGGGAGGAAAAC-------------------------ATACCATGAATCCCATGCT-----TTTGGGGTT------C------------------------CGTTTCTCGAA---------CGACCTTAT----------------------CTTGC----TTGGC-----------------------------A--T----------TTTCCT-----GGGA----TAA--TTCACACCCATCACTAAT------C-------C----------------------------------------------------------------GCACCCGGCACTTGGAAGCGCATAT----------------ATCACATTACTAAT--------------------------------CCATCA----ACCAA--------------TC-------CACATC---------------------------------------GA-TCCCCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAACGTGGTGAAGATCAAC-AGTGC----------------GGGCA--------------CGGTGATCAC
droTak1 scf7180000415873:294946-295191 - GAGAGGG---------------------------------------------------------------------------------------------AGAGGG-------------------------------------------------------------------------------------------------AAAGGGAGAGGGAGCGGGAAAG------------------------GGAGCGG--GAACATTA-----CAGGGAA------------AGGC--AT--------------------TCGC-----CACCTGGTGGTGGCAA-TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGCCCATCATCCCATGCCAC---CCCAC--CT--------------------------------------------------------------------------GCTCGC-----CCACTTT---------CCG-------------------------CCC-------------------GCCC--------------------------------AC----------TATGCCGTG-----------TT-------------------------------------G-------------------------------------------------------CAGCAGCAGCAGCAGCAGC------AGCAAC-----------------------------ACC---CGC---ACCATTTGCAACTAGAGA-------GGGAGCGATT-GGAGG--CACTGCATCGACATGGTCA--------------CGGGGTCTTG
droEug1 scf7180000409277:488143-488460 - TCCACACGGTCACCACCATGACTCCGCCGAC-----------GGGCAACAGCAATGTGAGTTCACCTTACCT------------------------------------------------------TGGGTTAAGTTCAGG-----TTTTTGTT--------------------------------------------------------------------------------------------------TCGG--GGATGAGC-----CCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------GGATGAAGATGAAAATCTT----------------------------------------GTTTTGTTT------------------------------------T-----------------------TTTTTAACCTTTACTGGTTC-------------------TGGTTTACCCATGGAGT---TGCCC--A--------------------------------------------TATTACTAAT------C-------C----------------------------------------------------------------GCACCAGGCATTTGGAAAAGCATACATAC----------CGATCACATTACTAAT--------------------------------CCATCA----ACCAA--------------TT-------TACATC---------------------------------------GAATAATCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAACGTGGTGAAGATCAAC-AGTGC----------------CGGGA--------------CGGTGATCAC
dm3 chr3R:4194318-4194593 - TTATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACAACTTA--TATGATAAGTG-----------------------T-------C--TACTCTTT------------------------------------------------------TCCT----------------------------------------TTTTCGTCT------------------------------------C-----------------------TTTTTACGCTCTGACATTTCATTTTCCGATAA------------CA---------------AACAA--C----------CAAC-----CAACCAATCAAAA--TGCGCA--TTTAACCAAC------A---------------------------------------------------------------------CACGCACACCACAATTGTAATGTG--AACTAC----------CCA--------CCAAA--------------------------------ACACCA----ACCAC--------------TC-------GACAACCAA----------------------------------------------------------AACACCACAACCAAC---AAC-----------------------------------AAC------CCCCCGAAAAAAAAAACATCACAAAAATCAGAGCGTTC----------------CGGTACTTCGAACATTTGGCGGTCATCAC
droSim2 3r:16772602-16772878 + TTATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACAACTTA--TATGATAAGTG-----------------------T-------C--TACTCTTT------------------------------------------------------TCCT----------------------------------------TTTTCGTCT------------------------------------C-----------------------TTTTTACGCTCTGACATTTCATTTTCCGATAA------------CA---------------AACAA--C----------CAAC-----CAACCA----AAA--TGCGCA--TTTAACCAAC------A---------------------------------------------------------------------CACGCACACCACAATTGTAATGTG--AACTAC----------CCA--------CCAAA--------------------------------ACACCA----ACCAC--------------TC-------GACAACCACAACACCACAACCAACAACCAA---------------------------------------------------C---AAC-----------------------------------AAC------CCC--CCGAAAAAAAACACCACAAAAATCAGAGCGTTC----------------CGGTACTTCGAACATTTGGCGGTCATCAC
droSec2 scaffold_10:38588-39021 - TCCACACGGTGACGACAATGACGCCACCGAC-----------GGGCAACAGCAATGTAAGTATAG-----------------------------------------------------------CACAGGTTCC----ATTCAAGGTTATGGTTTCAGCTTTTATTTATGTTCTCGGAACCGTGTTGGGTTAAATAAAAAAAAAAAAATAATAATAATAAAAAAAAAAA------------------AAA----------ACTTAA-----CCTAAAA-------GT---GTTTCCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----TTTTGGTTT------TAAATAAATGTAAACATGTTCTATACATTTTTTAAAATGGTTAGGCTACCCTATTTTATACGTTCATAATTTGCAATAGTCGAATG------------CG---------------ACGAA--C----------TTCCCT-----GTGA----AAA--GTCATGCCCATTATTTAT------T-------C----------------------------------------------------------------GCAACCGGCATTT----------------------------ATCGTATTACTAAT--------------------------------CCATTA----ACCAA--------------TC-------CACATC---------------------------------------GAATCATCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAATGTTGTGAAAATCAAT-AGTGC----------------TGGAA--------------CAGTGATCAC
droYak3 2R:4581088-4581377 + TTTTCAG-------------------------------------------------------------------------TTGCACACACAATCCGAACGAAAGAGCGAAAGAGCGAGCGGGCG-----------------------------------------------------------------------------------------C------------GAG------------------TGTGGGTGG--GAGCGAGA-----GAGGGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCA----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACTAACACACCCG--------------------------------T-------------------------------------------------ACACACACACACACACGCGCACACACGCAC-------------------GCAC--------------------------------AC-------------------TCTGCTCCGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AGC---AACA--CGCAGCGGG--AACGAGATGGC-----------------------------GATAG--------------TGGT--GGAG
droEre2 scaffold_4845:19585429-19585661 - TTTTCAG-------------------------------------------------------------------------TTGCACACACAATCCGAGCGAAAGAGCGAGAGAGCGAGCGGGCG---------------------------------------------------------------------------------------------CGAGTGTGG----------------------GTG-GTGG--GAGCGAGA-----GGGGGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCA----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACT--------------C----AC---------ACACAC-----AC---------------------------------------------------------------------------GCAC-------------------GCAC--------------------------------AC-------------------TCTGCTCCGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AGC--------------------------------------------------------------------------------------AAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TACAGACGGTGCAAACGGTGACGCCGGCCAC-----TAATCAAACCACCAGCCAAGTGAGTAATCCACAAATCTCTCCAGACTCTCTCACAA-CAAAGCGAAAGAG-------------------------------------------------------------------------------------------------GAAGAGAGTGAGAGAGAGAGAGAGAG--------------------AAATCGG--GGATGGGA-----GATGGGG--------G---AATC--AT--------------------ATAATGTACAAATAA--TATAATA------------CGGTATTCCATTGCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGCACCCATTTCGCGTTCCCTACTAA-------------------------CACACAC--A----------CACA-----CACTC----AC---------ACACTT-----AC---------------------------------------------------------------------------ACAC-------------------GCACACATCCACACTCCATGCGATCACACCACTAAC--------------------------------CC-------------------------------------A-------------------------------------------------------CAACAACAACAACAACAAC------AACAAC-----------------------------------AGCAACTGCAGCCACAGCAGGTGAACGTGGTGAAGATCAAC-AGCGC----------------TGGCA--------------CAGTGATCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................TCGG--GGATGGGA-----GATGGGG--------G---AAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............AACGGTGACGCCGGCCAC-----TAATCAAACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC------AACAAC-----------------------------------AGCAACTG....................................................................................21200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAAC------AACAAC-----------------------------------AGCAAC......................................................................................29200.051000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------A-------------------------------------------------------CAACAACAACAACAACAAC------AACAAC-----------------------------------............................................................................................27200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC------AACAAC-----------------------------------AGCAACTGC...................................................................................21200.051100000
droVir3
TACAAACGGTGCAAACGGTGACACCGGCAAC-----CAATACAAACACCAGCCAAGTAAGTATAC----------------------------------------------------------GCCAAGGTGGC----AGGCATAGTTAGGGGA-------------------------------------CACTAA---------GT----A---------TT-----TCGATGCTTCTCAAACAAAAAAAAAAA--AAAAAAAA-----AAACAAA----------------CG--------AA---------------ATGTTTAATTAA-----------TGTTTATACACGGGATTCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAACACACAACACATC---TTCAC-----------------------------------------------------------------------------------------CCTTTTC---------ATA---------CTTAACT---------AAT-------------------AC--------------------------------ACAC----------AACATTACA----------------------------------------TT-TGC----A----------------------------------------------------------CAACAACAACAACAAC------AACAAC-----------------------------------ATCAACTGCAGCCTCAACAGGTGAACGTGGTGAAGATCAAC-AGCGC----------------TGGCA--------------CCGTGATCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................CAAC-----CAATACAAACACCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AAAAA--AAAAAAAA-----AAACAAA----------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000000000000000000000000000000000000000000000000000000000006
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----A----------------------------------------------------------CAACAACAACAACAAC------A....................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
droGri2
CACAACA----------------------------------------------------------------------------------------GAGAGAGGGAGAGATAGAGAGAGATAGAG-------------------------------------------------------------------------------------------------ATAGAGAT------------------AGAGATAGA--GATAGAGA-----GAGAGAGAG------------CT-----------------------------------------------------------------TCCCACATCAATTAAGTTCATAGACCGTTTGTTCTCTGGGCAACACGCATACGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAG------------------------ACCCGACCG----------AAATAGCCACACACAC-----ACACACACACACATATAT-----------CAGGCATCATCTAT------------------------------------------------------------------------------------------------------------------------CTATA--------------------------------TGTATATGCAACATA-----AACGTGCAGCAACTAACAACTAAATTTCATTAA-GCCGCATCG------------------C------ACAAATT-----------------GAACTACAACA---------GGCGG--------------------------------------C----------------GGCAA--------------CGGTGGTGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGATGCTGATGCTGATGATGATGATGATGATGACGATGATGATGCCGATGCCGA--TGAGAATGA-----------------------------------------------------------TTT-----------------------------------------------------------GGATGATCTCGAAGAACAGCAGCAGCAGCAGCAGCAACAACAA------------------CAG-ATTGTCTCAACTAGATTGGCAACAAGC--------GGATCATC--AC--------------------ATAC-------TGTA--AGCAATAGA--------------------------------------TTCTTA------------------------------------------------------TTCT----------------------------------------TTATTGTAA------C------------------------TAATCATTGA-------------------------------AT--------TTACTTTTCTAAATATAAATTTCATATATCCCATCCACATATAA--T----------C-------------------------------------------------------ATCATCTACTAAT-----A-------------------------------------------------------------------------------------------TATTACGCATAC----------CACGCCACA----------------------------------------TT-------CACATT---------------------------------------ACAAAATCCTCAAAATAGCAGCAGCAGCAGC------AGCATC-----------------------------ACC---AG---CAACAACAACAACAAGTGAATGTGGTGAAAATTAAT-AGCGC----------------CGGCA--------------CTGTGATCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................TAGATTGGCAACAAGC--------GGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
...............................................................GA-----------------------------------------------------------TTT-----------------------------------------------------------GGATGATCTCGAAGAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..............................................................TGA-----------------------------------------------------------TTT-----------------------------------------------------------GGATGATCTCGAAGAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
................................................................A-----------------------------------------------------------TTT-----------------------------------------------------------GGATGATCTCGAAGAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...........................................................................................................................................................................................................................................................................TGGCAACAAGC--------GGATCATC--AC--------------------ATAC-------TCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.............................................................................................................................................................................................................................................................TGTCTCAACTAGATTGGCAACAAGC--------GG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.......................................................................................................................................................................................................................................................CAG-ATTGTCTCAACTAGATTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................................................................................................AACTAGATTGGCAACAAGC--------GGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------AGCATC-----------------------------ACC---AG---CAACA..................................................................................2220.50100010
........................................GATGCCGATGCCGA--TGAGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGCAGCAGCAGCAGC------.....................................................................................................................................2060.17101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------AGCATC-----------------------------ACC---AG---CA.....................................................................................2070.14100001
.....................TGATGATGATGACGATGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
.......................................................................................................................................................................................................GAACAGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
................GATGATGATGATGATGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200200
..............ATGATGATGATGATGATGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200110
....................ATGATGATGATGACGATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC------AGCATC-----------------------------ACC---............................................................................................21130.08100010
......................................................................................................................................................................................................AGAACAGCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.06100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------AGCATC-----------------------------ACC---............................................................................................18170.06100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAACAACAACAAGT......................................................................19170.06100001
...................................................................................................................................................................................................................CAGCAGCAGCAACAACAA------------------CAG-A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.05100010
..................TGATGATGATGATGACGATGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
............................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
......TGATGCTGATGATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
......................................................................................................................................................................................................AGAACAGCAGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
......................GATGATGATGACGATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100001
.......GATGCTGATGATGATGATGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
....GCTGATGCTGATGATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................................................GAACAGCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
.......................ATGATGATGACGATGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
................GATGATGATGATGATGACGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
........................TGATGATGACGATGATGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
...................GATGATGATGATGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................GATGATGATGACGATGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
........................TGATGATGACGATGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
TCCACACAGTGACAACAATGACGCCACCGTC-----------AGGGAACAGCAATGTGAGTATGA-----------------------------------------------------------CCC-----------------------------------------------------------AGTA----------------------------------------------------------------------------------------------------GGCTCC--------CAATCCCGACCAAT-----TCCCA------------------TTTCTGATCGGCGT---------T-------CAGCGGCAGCGCGACGTCTGGGTTTCACGGCTTGACAAGG---------CGCACGAAAACTAAT-CTCTGTCTGGTCCATCCTGCATCCCCCCATTCCCATC--CATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG-GTTCATCCAATCACTCCCATTCGATTCCACTA---------------------------------------------------------------------ACCCAACATTTGATCCATT---------------CA----ATTAACTAACCGTCAAACTCCCACCT----CCAACATT----------------------------------------------------------------------------------------------------GAACTCCAACG---------AACAGCAGCCGCAGCAGGTCAATGTGGTGAAGATCAAC-AGCGC----------------CGGTA--------------CGGTGATCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................TGACGCCACCGTC-----------AGGGAACAGCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
........GTGACAACAATGACGCCACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
droPer2
TCCACACAGTGACAACAATGACGCCACCGTC-----------AGGGAACAGCAATGTGAGTATGA-----------------------------------------------------------CCC-----------------------------------------------------------AGTG----------------------------------------------------------------------------------------------------GGCTCC--------CAATCCCGACCAAT-----TCCCA------------------TTTCTGATCGGCGT---------T-------CAGCGGCAGCGCGACGTCTGGGTTTCACGGCTTGACAAGG---------CGCACGAAAACTAAT-CTCTGTCTGGTCCATCCTGCATCCCCCCATTCCCATC--CATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG-GTTCATCCAATCACTCCCATTCGATTCCACTA---------------------------------------------------------------------ACCCCACATTTGATCCATT---------------CG----ATTAACTAACCGTCAAACTCCCACCT----CCAACCTT----------------------------------------------------------------------------------------------------GAACTCCAACG---------AACAGCAGCCGCAGCAGGTCAATGTGGTGAAGATCAAC-AGCGC----------------CGGTA--------------CGGTGATCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAC-AGCGC----------------CGGTA--------------C.........1811.001100000
droAna3
AGAGA-G---------------------------------------------------------------------------------------------AGAGAG-------------------------------------------------------------------------------------------------AAAGCGAACGAGAGTGGGAGGGAGAG--------------------A---AGA--AGGCAGGC-----GATGGAA----------------CA--------G-------------------------------------------------------------------------------AACC------------------------------------------------------CTTT----------------------------------------TGTAACTTCTATAGA------------------------------------------------------------------GA-----------------------------------CTGCAGC---CGCAC--ACAC-TCGCACTAACACACACT--------------------------------C----ACACACACACAC-----------CATCCCCCACTC------------------ACACTCACCTATTTCC-----------------------------------------------------------ACAC----------TCATTCACA----------------------------------------CA-------CACACT-------------------------------------------------------------------AGAAGACAC---ACT-----------------------------------AGC---C---------------------------------------------------------------------------------AACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAGAGACC-----------------------------------------------------------------------------------------------GAG-------------------------------------------------------------------------------------------------AAAGGGACAGAGAAAGGGACAGAGAA------------------AGAGAGAGG--GAACGGGA-----GAGGGAG----------------CA--------AAGTATTAGCTCAT-----CCATG------------------CGTCTGAGTGGAAG---------T-------C--CTGCATCGCCACATTTGGGCGCC---------------------------------------------------------------------------------------------------------------------------------------------------------ACCATCGTCCAGACCCATCATCTTCA----CCAGCAACTCAC-------------------------C----------CAGC-----CCCTGA----CCC--TCCGCA------------------------------------AGAGCA-GTCCGCCCACGGAGCACCTGCTGAGTCAGTCC---------------------------------------------------------------------ATGCAACATCTGACGC-------------------A-------------------------------------G-------------------------------------------------------CAGCAGCAACTGCATCTGC------ACCACCTCC----------------------------------------------------------TCGGCCAGCAGCAAC-AGCAA----------------CAGCA--------------GCAGCAGCAASizeHit CountTotal NormTotal
No Reads
droKik1
GAGAGGG---------------------------------------------------------------------------------------------AAAGAG-------------------------------------------------------------------------------------------------ATCGGGAGCGGGAGAGGGAA------------------------------CGG--GAGCGGGA-----GCA-CTT--TCGGGAG---CGTC--AC--------------------TCGC-----CACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----CTCACTACCACCATCCCGCCATGCCGC---CCCAC--CT--------------------------------------------------------------------------GCTAGC-----ACACTTT---------CCA-------------------------CCC-------------------GCCC--------------------------------AC----------TATGTCGCC-----------CT-------------------------------------G-------------------------------------------------------CAGCAGCAACAGCAACAGC------AACAGCAGCAGGCGCAGCAGCAAC-----------CCCATCCGC---ATCAACT-------GCAAATGGAGCGAGAGCGATT-GGAGG--CAC-----------T-GCA--------------TCGACACGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAGAG---------------------------------------------------------------------------------------------AAAGAG-------------------------------------------------------------------------------------------------AAAGTAAGTGGGAATGAGAATGAGAA------------------AGAGATA----------GA-----GATAGAG-------AG---GGCTGCGCAGAGTCAACGATTAGCTAATAAGA-----CGATTGGCAGTGGCAA-AC------------TTTCGCCATTGGCCACTTTGTGAAATTGTTTGCCATA-----------------------------------------------T----------------------------------------------TTGCAG------------------------------------C-----------------------TGCTGAAACTTTAT--------CGGCCGTGCCAGCACACACATACAGCTACACAC-----ACAC--ATGATACACATGGAT---------------------------------------------------------------------------------ATACCACTACTCGCGCAGACTAACTCGCCATCACGC---------------------------------------------------------------------ACACA---------------CG---AACTAATCAAATAAACTGAACCAACTT----GAGACGATGAA----------------------------------------------------------CACAGCAGCAACAGC---AAC-----------------------------------AGC---A-----------------------AGAGAGTCAAC-AGAACGGAGC-----------TGG-----------------ATGGGCTATSizeHit CountTotal NormTotal
No Reads
droEle1
ACAGGCC----------------------------------------------------------------------------------------GAGAGAAGGAGAGAGAGAGAGAGAGAGCG-------------------------------------------------------------------------------------------------ACAGAGAG------------------AGTGGGTGG--GAGCGAGA-----GAGAGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCT----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ATACTGCGCACT--------------C----AT--------------------------------------------------------------------------------------------------------------------------AC--------------------------------AC-------------------GCTGCTCTGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AAC---A---------------------------------------------------------------------------------GCAASizeHit CountTotal NormTotal
No Reads
droRho1
AGAGC-G---------------------------------------------------------------------------------------------GAAGAG-------------------------------------------------------------------------------------------------AGAGTGGGTGGGAGC--------------------------------------------GAGA-----GAGAGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCT----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACT--------------T----AT--------------------------------------------------------------------------------------------------------------------------------ACAC------------------------AC-------------------GCTGCTCTGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AAC---------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droBia1
TCCACACGGTCACGACCATGACGCCGCCGAC-----------GGGCAACAGCAACGTGAGTATCC-CCAGGGATGTTGGGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGGGGTTTGGAAAGGGTATTTCTGGGGAGGAAAAC-------------------------ATACCATGAATCCCATGCT-----TTTGGGGTT------C------------------------CGTTTCTCGAA---------CGACCTTAT----------------------CTTGC----TTGGC-----------------------------A--T----------TTTCCT-----GGGA----TAA--TTCACACCCATCACTAAT------C-------C----------------------------------------------------------------GCACCCGGCACTTGGAAGCGCATAT----------------ATCACATTACTAAT--------------------------------CCATCA----ACCAA--------------TC-------CACATC---------------------------------------GA-TCCCCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAACGTGGTGAAGATCAAC-AGTGC----------------GGGCA--------------CGGTGATCACSizeHit CountTotal NormTotal
No Reads
droTak1
GAGAGGG---------------------------------------------------------------------------------------------AGAGGG-------------------------------------------------------------------------------------------------AAAGGGAGAGGGAGCGGGAAAG------------------------GGAGCGG--GAACATTA-----CAGGGAA------------AGGC--AT--------------------TCGC-----CACCTGGTGGTGGCAA-TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGCCCATCATCCCATGCCAC---CCCAC--CT--------------------------------------------------------------------------GCTCGC-----CCACTTT---------CCG-------------------------CCC-------------------GCCC--------------------------------AC----------TATGCCGTG-----------TT-------------------------------------G-------------------------------------------------------CAGCAGCAGCAGCAGCAGC------AGCAAC-----------------------------ACC---CGC---ACCATTTGCAACTAGAGA-------GGGAGCGATT-GGAGG--CACTGCATCGACATGGTCA--------------CGGGGTCTTGSizeHit CountTotal NormTotal
No Reads
droEug1
TCCACACGGTCACCACCATGACTCCGCCGAC-----------GGGCAACAGCAATGTGAGTTCACCTTACCT------------------------------------------------------TGGGTTAAGTTCAGG-----TTTTTGTT--------------------------------------------------------------------------------------------------TCGG--GGATGAGC-----CCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------GGATGAAGATGAAAATCTT----------------------------------------GTTTTGTTT------------------------------------T-----------------------TTTTTAACCTTTACTGGTTC-------------------TGGTTTACCCATGGAGT---TGCCC--A--------------------------------------------TATTACTAAT------C-------C----------------------------------------------------------------GCACCAGGCATTTGGAAAAGCATACATAC----------CGATCACATTACTAAT--------------------------------CCATCA----ACCAA--------------TT-------TACATC---------------------------------------GAATAATCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAACGTGGTGAAGATCAAC-AGTGC----------------CGGGA--------------CGGTGATCACSizeHit CountTotal NormTotal
No Reads
dm3
TTATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACAACTTA--TATGATAAGTG-----------------------T-------C--TACTCTTT------------------------------------------------------TCCT----------------------------------------TTTTCGTCT------------------------------------C-----------------------TTTTTACGCTCTGACATTTCATTTTCCGATAA------------CA---------------AACAA--C----------CAAC-----CAACCAATCAAAA--TGCGCA--TTTAACCAAC------A---------------------------------------------------------------------CACGCACACCACAATTGTAATGTG--AACTAC----------CCA--------CCAAA--------------------------------ACACCA----ACCAC--------------TC-------GACAACCAA----------------------------------------------------------AACACCACAACCAAC---AAC-----------------------------------AAC------CCCCCGAAAAAAAAAACATCACAAAAATCAGAGCGTTC----------------CGGTACTTCGAACATTTGGCGGTCATCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAAAAATCAGAGCGTTC----------------CGGTACT......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAA------------CA---------------AACAA--C----------CAAC-----CAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC----------------CGGTACTTCGAACATTTGGCGGT......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACACCACAATTGTAATGTG--AAC..........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCA--TTTAACCAAC------A---------------------------------------------------------------------CCGA...................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------AACACCACAACCAAC---AA................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCACAACCAAC---AAC-----------------------------------A...........................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACATCACAAAAAA.......................................................2270.1410000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACACAACTTA--TATGATAAGTG-----------------------T-------C--TACTCTTT------------------------------------------------------TCCT----------------------------------------TTTTCGTCT------------------------------------C-----------------------TTTTTACGCTCTGACATTTCATTTTCCGATAA------------CA---------------AACAA--C----------CAAC-----CAACCA----AAA--TGCGCA--TTTAACCAAC------A---------------------------------------------------------------------CACGCACACCACAATTGTAATGTG--AACTAC----------CCA--------CCAAA--------------------------------ACACCA----ACCAC--------------TC-------GACAACCACAACACCACAACCAACAACCAA---------------------------------------------------C---AAC-----------------------------------AAC------CCC--CCGAAAAAAAACACCACAAAAATCAGAGCGTTC----------------CGGTACTTCGAACATTTGGCGGTCATCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TCCACACGGTGACGACAATGACGCCACCGAC-----------GGGCAACAGCAATGTAAGTATAG-----------------------------------------------------------CACAGGTTCC----ATTCAAGGTTATGGTTTCAGCTTTTATTTATGTTCTCGGAACCGTGTTGGGTTAAATAAAAAAAAAAAAATAATAATAATAAAAAAAAAAA------------------AAA----------ACTTAA-----CCTAAAA-------GT---GTTTCCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----TTTTGGTTT------TAAATAAATGTAAACATGTTCTATACATTTTTTAAAATGGTTAGGCTACCCTATTTTATACGTTCATAATTTGCAATAGTCGAATG------------CG---------------ACGAA--C----------TTCCCT-----GTGA----AAA--GTCATGCCCATTATTTAT------T-------C----------------------------------------------------------------GCAACCGGCATTT----------------------------ATCGTATTACTAAT--------------------------------CCATTA----ACCAA--------------TC-------CACATC---------------------------------------GAATCATCATCA-----------------------------------------------------------------------CAGCAACCGCAGCAGGTGAATGTTGTGAAAATCAAT-AGTGC----------------TGGAA--------------CAGTGATCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........GACGACAATGACGCCACCGAC-----------GGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.............GACAATGACGCCACCGCA-----------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.0511000
droYak3
TTTTCAG-------------------------------------------------------------------------TTGCACACACAATCCGAACGAAAGAGCGAAAGAGCGAGCGGGCG-----------------------------------------------------------------------------------------C------------GAG------------------TGTGGGTGG--GAGCGAGA-----GAGGGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCA----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACTAACACACCCG--------------------------------T-------------------------------------------------ACACACACACACACACGCGCACACACGCAC-------------------GCAC--------------------------------AC-------------------TCTGCTCCGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AGC---AACA--CGCAGCGGG--AACGAGATGGC-----------------------------GATAG--------------TGGT--GGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------AGC---AACA--CGCAGCGGG--AACGA................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--CGCAGCGGG--AACGAGATGGC-----------------------------.............................2211.00101000000000
...................................................................................................GAAAGAGCGAAAGAGCGAGCGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------------------------T-------------------------------------------------ACACACACACACACACGC................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................................................................................................................................................................................GGGTGG--GAGCGAGA-----GAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
TTTTCAG-------------------------------------------------------------------------TTGCACACACAATCCGAGCGAAAGAGCGAGAGAGCGAGCGGGCG---------------------------------------------------------------------------------------------CGAGTGTGG----------------------GTG-GTGG--GAGCGAGA-----GGGGGCGAG------------------------------------------------------------------------------------------------------TTCATT------------------------------------------------------CTCA----------------------------------------TGTCTGTTTTATTTT------------------------------------------------------------------AT--------TTGCCTTAACAAAATAATAATACAGACATGCAAA---CACGC--ACACAGCGCACT--------------C----AC---------ACACAC-----AC---------------------------------------------------------------------------GCAC-------------------GCAC--------------------------------AC-------------------TCTGCTCCGAA--------------------------------TGCGTAAACAACAAA----------------------------------------------------------AGCAGCTGCAACAAC---AAT-----------------------------------AGC--------------------------------------------------------------------------------------AACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................ATCCGAGCGAAAGAGCGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100

Generated: 05/17/2015 at 10:59 PM