ID:

dmo_73

 Coordinate:

scaffold_6473:9187720-9187780 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

CDS

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI15727-cds]

No Repeatable elements found

Sense Strand Reads

AGCGTCATTTTCTACTGCGGCTATGACAAATTGCTGAGCGCCTTTTTGCAGCGACGACAGCGACTGCGCAGCGATAGCATTGAGCGCTGGCTACGTCGCTATCGCCGCTACTGTGAGAGCGACGACAACAACAACAATATCGCCGAGTGTGAGTCAGCGTC

***********************************...((((((.....((((.(((.((((((.((.(((((...........)))))))...)))))).))).)))).....))).)))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V056

head

 V049

head

 V110

male body		 V041

embryo
..................................................GCGACGACAGCGACTGCGCAGC......................................................................................... 22 0 1 326.00 326 160 124 14 14 6 8
......................................................................................CTGGCTACGTCGCTATCGCCGCT.................................................... 23 0 1 76.00 76 40 8 12 6 8 2
.......................................................................................TGGCTACGTCGCTATCGCCGCTA................................................... 23 0 1 73.00 73 28 4 21 15 3 2
.......................................................................................TGGCTACGTCGCTATCGCCGCT.................................................... 22 0 1 44.00 44 24 9 2 7 2 0
.......................................................................................TGGCTACGTCGCTATCGCCG...................................................... 20 0 1 34.00 34 4 0 12 14 4 0
......................................................................................CTGGCTACGTCGCTATCGCCG...................................................... 21 0 1 34.00 34 9 1 9 12 2 1
...................................................CGACGACAGCGACTGCGCAGC......................................................................................... 21 0 1 24.00 24 16 5 1 2 0 0
...................................................CGACGACAGCGACTGCGCAGCG........................................................................................ 22 0 1 23.00 23 13 7 0 0 1 2
......................................................................................CTGGCTACGTCGCTATCGCCGC..................................................... 22 0 1 20.00 20 13 1 3 3 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGCTA................................................... 24 0 1 19.00 19 6 1 4 4 4 0
.......................................................................................TGGCTACGTCGCTATCGCCGC..................................................... 21 0 1 19.00 19 10 2 3 4 0 0
..................................................GCGACGACAGCGACTGCGCAGCG........................................................................................ 23 0 1 13.00 13 10 1 0 1 1 0
.................................................AGCGACGACAGCGACTGCGCAGC......................................................................................... 23 0 1 11.00 11 3 6 1 0 0 1
..................................................GGGACGACAGCGACTGCGCAGC......................................................................................... 22 1 1 10.00 10 0 10 0 0 0 0
......................................................................................CTGGCTACGTCGCTGTCGCCGCT.................................................... 23 1 1 7.00 7 1 0 3 3 0 0
..................................................GCGACGACAGCGACTGCGC............................................................................................ 19 0 1 7.00 7 7 0 0 0 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGCC.................................................... 23 1 1 6.00 6 0 6 0 0 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGCTT................................................... 24 1 1 6.00 6 4 1 0 1 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTAC.................................................. 24 0 1 5.00 5 0 2 2 1 0 0
..................................................GCGACGACAGCGACTGCGCAGCGT....................................................................................... 24 1 1 5.00 5 0 0 1 0 4 0
..................................................GCGACGACAGCGACTGCGCAG.......................................................................................... 21 0 1 5.00 5 3 0 0 0 2 0
......................................................................................CTGGCTACGTCGCTATCGCC....................................................... 20 0 1 5.00 5 1 0 2 2 0 0
..................................................GCGTCGACAGCGACTGCGCAGC......................................................................................... 22 1 1 4.00 4 0 3 1 0 0 0
.......................................................................................TGGCTACGTCGCTGTCGCCGCTA................................................... 23 1 1 4.00 4 0 0 4 0 0 0
........................................................................................GGCTACGTCGCTATCGCCGCTA................................................... 22 0 1 4.00 4 4 0 0 0 0 0
..................................................GTGACGACAGCGACTGCGCAGC......................................................................................... 22 1 1 4.00 4 0 4 0 0 0 0
...................................................CGACGACAGCGACTGCGCAGCGA....................................................................................... 23 0 1 4.00 4 2 1 0 1 0 0
...................................................CGACGACAGCGACTGCGCAGCGT....................................................................................... 23 1 1 3.00 3 0 0 0 0 3 0
.......................................................................................TGGCTACGTCGCTATCGCCGCC.................................................... 22 1 1 3.00 3 0 3 0 0 0 0
......................................................................................CTGGCTACGTCGCTGTCGCCG...................................................... 21 1 1 3.00 3 0 0 3 0 0 0
........................................................................................GGCTACGTCGCTATCGCCGCT.................................................... 21 0 1 3.00 3 2 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTT................................................... 23 1 1 3.00 3 1 1 0 1 0 0
..................................................GCCACGACAGCGACTGCGCAGC......................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0
.......................................................................................TGGCTACGTCGCTGTCGCCG...................................................... 20 1 2 2.50 5 1 0 1 3 0 0
......................................................................................CGGGCTACGTCGCTATCGCCGCT.................................................... 23 1 1 2.00 2 0 2 0 0 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGCTC................................................... 24 1 1 2.00 2 0 0 1 0 1 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTAA.................................................. 24 1 1 2.00 2 1 0 0 1 0 0
..................................................GCGACGACAGCGCCTGCGCAGC......................................................................................... 22 1 1 2.00 2 0 1 0 1 0 0
...................................................CGACGACAGCGACTGCGCAG.......................................................................................... 20 0 1 2.00 2 1 0 0 1 0 0
.......................................................................................TGGCTACGTCGCTATCTCCG...................................................... 20 1 1 2.00 2 0 0 2 0 0 0
......................................................................................CTGGCTACGTCGCTGTCGCCGC..................................................... 22 1 1 2.00 2 0 0 0 2 0 0
..................................................GCGACGACAGCGACTGCGCCGC......................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0
..................................................GCGACGACAGCGACTGCGCCGCGT....................................................................................... 24 2 1 2.00 2 0 0 0 2 0 0
.......................................................................................TGGCTACGTCGCTATCGCCACTA................................................... 23 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................TAGCTACGTCGCTATCGCCGCT.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................GCTACGACAGCGACTGCGCAGC......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................CTACGTCGCTATCGCCGCTA................................................... 20 0 1 1.00 1 0 0 1 0 0 0
......................................................................................CTGGCTCCGCCGCTATCGTCGCT.................................................... 23 3 1 1.00 1 0 0 0 1 0 0
..................................................GCGACGGCAGCGACTGCGCAGC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TTGGCTACGTCGCTATCGCCGCT.................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTTA.................................................. 24 2 1 1.00 1 0 0 0 1 0 0
......................................................................................CTGGCTACGTCGCTGTCGCCGCTT................................................... 24 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................GCTGGCTACGTCGCTATCGCCG...................................................... 22 0 1 1.00 1 0 0 1 0 0 0
...................................................CTACGACAGCGACTGCGCAGCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGGCTACGTCGCTATCGC........................................................ 18 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTATC................................................. 25 2 1 1.00 1 0 0 1 0 0 0
...................................................CGACGACAGCGACTGCGCCGC......................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................GCTGGCTACGTCGCTATCGCCGC..................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................GCGTCGACAGCGACTGCGCAGCT........................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................CCTGGCTACGTCGCTATCGCCGCT.................................................... 24 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CTGGCTACGTCACTATCGCCGCTT................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GCGACGACAGCGCCTGCGCAGA......................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TACGTCGCTGTCGCCGCTA................................................... 19 1 1 1.00 1 0 0 1 0 0 0
..................................................GCGACGACAGCGACTGCGCAGCGA....................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGCTTT.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GCGACGACAGCGAATGCGCAGC......................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTAGCGCCGTTA................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCACTATCGCCGCTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CTGGCTACGTCGCTGTCGCCGCTA................................................... 24 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................TTGCTACGTCGCTATCGCCGCT.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...................................................CGACGACAGCGACTGTGCAGCGA....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................TGGCTACGTCGGTATCGCCGCTT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................CGACGACAGCGACTGAGCAACGA....................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCGT................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATTGCCGCTA................................................... 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................CGCGCTACGTCGCTATCGCCGCC.................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGGCTACGTCGCTATCCCCGCT.................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GCGACGACGGCGACTGCGCAGC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.................................................AGCGACGACAGCGACTGCG............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGGCTACGTCGCGATAGCAGCTA................................................... 23 3 1 1.00 1 0 0 1 0 0 0
................................................TCGCGACGACAGCGACTGCGCAGC......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.................................................TGCGACGACAGCGACTGCGCAGC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GCGACGACAGCGACTGCGCAGCT........................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................CTGGCTACGTCTCTTTCTCCGCT.................................................... 23 3 1 1.00 1 0 0 1 0 0 0
..................................................GCGACGACAGCGACTGCGCAGCC........................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................CGCGCTACGTCGCTATCGCCGCT.................................................... 23 2 1 1.00 1 0 1 0 0 0 0
....................................................GACGACAGCGACTGCGCAGCGA....................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................................................CGACGACAGCGACTGCGCAGCGC....................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTAT.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...................................................CGACGACAGCGACTGCGCAGCGAT...................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................TTGTTACGTCGCTATCGCCGCTA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................GCGACGACAGCGACTGCGCGGC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CTGGCTACGTCGCCGTCGCCGCT.................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...................................................CGACGACAGCGACTGCTCAGC......................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
......................................................................................CTGGCTACGTCGCTGGCGCCG...................................................... 21 2 1 1.00 1 0 0 0 1 0 0
......................................................................................CTGGCTACGGCGCTATCGCCG...................................................... 21 1 1 1.00 1 0 0 0 1 0 0
......................................................................................CTGGCTACGTCGCTGTCGC........................................................ 19 1 1 1.00 1 0 0 1 0 0 0
......................................................................................CTGGCTACGTCCCTATCGCCGTT.................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCCTCTA................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GCGACGACAGCGACTGCGCAGT......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................GACGACAGCGACTGCGCAGC......................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1
......................................................................................CTGGCTACGTCGCTATCGTCGCT.................................................... 23 1 1 1.00 1 0 0 0 1 0 0
......................................................................................CTGGCTACGTCGCTATCGCCGTC.................................................... 23 2 1 1.00 1 0 0 0 0 1 0
......................................................................................CTGGCTACGTCGCTATCGCCCCTC................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCCACGTCGCTATCGCCG...................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................TGGCTACGTCGCTATCGCCTCTC................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.................................................AGCTACGACAGCGACTGCGCAGC......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TTGCTACGTCGCTATCGCCGCC.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................GCGACTACAGCGACTGCGCAGC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
......................................................................................CTGGCTACGTCGCTATCGTC....................................................... 20 1 1 1.00 1 0 0 0 0 1 0
...................................................CGACGACAGCGACTGAGCAGC......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
......................................................................................CTGGCTACGTCGGTATCGCGG...................................................... 21 2 1 1.00 1 0 0 1 0 0 0
...................................................TGACGACAGCGACTGCGCAGCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................GCGGGCTACGGCGCTATCGTCG...................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................TGGCTACGTCGCTATCGCTGCTC................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.................................................ATCGACGACAGCGACTGCGCAGC......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGGCTACGTCGCTCTCGCCGCT.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................TGGCTACGTCGCTATCGCCGCTG................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.................................................AGCGACGACAGCGACTGC.............................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
......................................................................................CTGGCTACGCCGCTATCGCCG...................................................... 21 1 1 1.00 1 0 0 1 0 0 0
......................................................................................CGGTCTACGTCGCTATCGCCGCC.................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGGCTACGACGCTATCGCCGCTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................AGCGACGACAGCGACTGCGCAGT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................CTCGCTAAGTCGCTATCGCCGCC.................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................GCGACAACAGCGACTGCGCAGC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................TGGCTACGTCGCTATCACCGCTA................................................... 23 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................TGGCTACGTCGCTCTCGCCGCTA................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GCGACGACAGCGACTGCG............................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GACAACAACCATTTCGCCGAGT............. 22 3 2 0.50 1 0 0 0 0 0 1
......................................................................................CGGGCGACGCCGCTATCGCCGCT.................................................... 23 3 2 0.50 1 0 0 0 1 0 0
.......................................................................................TGGCTACGTCGCTGTCGCCGCTC................................................... 23 2 2 0.50 1 0 0 1 0 0 0
....................................................GACGACAGGGACTGCGCAGCTG....................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
..................................................GTGTCGACAGCGACTGCGCAGC......................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.......................................................................................TGGCTACGTCGCTGTCGCCGCT.................................................... 22 1 2 0.50 1 1 0 0 0 0 0
......................................................................................ATGGCTACGTCGCTGTCGCCGCT.................................................... 23 2 2 0.50 1 0 0 0 1 0 0
..................................................GGGTCGACAGCGACTGCGCAGC......................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.......................................................................................TGGCGACGGCGCTAGCGCCGCTA................................................... 23 3 2 0.50 1 0 0 1 0 0 0
..................................................GCGACGTCAGCGACCGCGCTGC......................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0
...................................................CGACGACGGCGACTGCGCCGCG........................................................................................ 22 2 6 0.17 1 0 0 0 1 0 0
......................................................................................CTGGCTACGTCCCGATCAC........................................................ 19 3 14 0.07 1 0 0 1 0 0 0

Anti-sense strand reads

TCGCAGTAAAAGATGACGCCGATACTGTTTAACGACTCGCGGAAAAACGTCGCTGCTGTCGCTGACGCGTCGCTATCGTAACTCGCGACCGATGCAGCGATAGCGGCGATGACACTCTCGCTGCTGTTGTTGTTGTTATAGCGGCTCACACTCAGTCGCAG

*************************************...((((((.....((((.(((.((((((.((.(((((...........)))))))...)))))).))).)))).....))).)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V049

head

 M060

embryo

 V110

male body
....................................................CTGCTGTCGCTGACGCGTCGCTA...................................................................................... 23 0 1 1.00 1 1 0 0 0
................................................GTCGCTGCTGTCGCTGACGC............................................................................................. 20 0 1 1.00 1 1 0 0 0
.........................................................................................CGGTGCACCGATCGCGGCGATGA................................................. 23 3 1 1.00 1 0 1 0 0
...........................................................................................ATGCAGCGATAGCGGCGATGA................................................. 21 0 1 1.00 1 1 0 0 0
.......................................................................GCTATCGTAACTCGCGACCGATGCCGC............................................................... 27 1 1 1.00 1 0 0 1 0
.............TGACGCCCATACCGTTTAACT............................................................................................................................... 21 3 7 0.14 1 0 1 0 0
..........................................................................................................................GCTGTCGTTGTTGTAATAGC................... 20 2 13 0.08 1 1 0 0 0
..................................................................................................GATACCGGCGACGACACT............................................. 18 2 18 0.06 1 0 0 0 1
....................................................................GTTGCTATCGGAACACGCG.......................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6473:9187670-9187830 + dmo_73 confident AG-----CGTCATTTTCTACTGCG----------------GCTATGA-CAA-----ATTGCT---------GAGCGCCTTTT-------------------TGCA------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGATAGCATTGAG-----------------------------------------------------------CGCTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----ACTGT-------------------G-----A------------------------GAGCGACG-ACAACAA--------------------------CAACAATATCG---CCGAGT-----------------------------------------------------------------------------------------------------GTGAGT---------CAG----------------CGTC
droVir3 scaffold_12726:978100-978263 - AG-----CGTCATTTGCTTCTTTG----------------GCTATGA-CAA-----ATTACT---------GAGCGCCTTTTTGCA--TA------GCAG--CCA------GC---------G----------------------T-----------------------------CGA------------------CAGCGACTGCGCAGCGTCGCTATTGAG-----------------------------------------------------------CGCTGGCTGCGACGC----TATC---------------------G--------------------CCGGC----TCTGC-------------------G-----A------------------------------GA-GCGACAG--------------------------CAACAGCAGCG---CTGAGC-----------------------------------------------------------------------------------------------------GTGAGT---------CAG----------------CGCT
droGri2 scaffold_14853:1378501-1378642 + GG-----CAGCAGCTACTGCTGCG----------------GCTGCGT-CAA-----TT-GCT---------GGA----------------------GCTGCTTCA------AC---------G----------------------C-----------------------------CGG------------------CAGCTGCTAC--TAAGATGGCTGGTTT-----------------------------------------------------------CGCT---G-------------------------------GCA--AG-------CGACTGCAATTG-----------------------------------------------------------------------------------------------CCGCGGGCCAACAACAATGT-G---CCCAGTGTGATTA-------------------------------------------------------------------------------------------------TGC---------TGC----------------CG--
droWil2 scf2_1100000004909:5002701-5002877 + AG-----CGCCAACATCGACAACG----------------ACCACGA-CGAC--AACT-GCA-----------GCACCAAC--------------------TACA------AC---------GACTACAACAACAGCAGCAACGACAACAACCACAGAA-----CCAAC------------------------------------------------------------------------------------------------------------------------A---------------ACGACAACG----ACGGCTGCA-ACAACAACT---------A--------------C-C--GCTGCAA---CGACG-----A------------------------------CA-ACAACA-----------------------------------------GCAG------CAACGACAACAACCACA----------------------------------------------------------------------------------GAAC---------CAA----------------CGAC
dp5 4_group1:4366200-4366370 + AG-----CATCACCAGCAACAATTGAGCATGTATGGTCAGGCAATG----GGCCAGCA-GCA---------GCA----------------------------------------GCAACCACAGCCAACGCAGCAG-----------------------------CAAC---------AAGTGGT------------------------------TGTGC--------------------------------------------------------------CACCAGTGGCGGCAC----AGCC----------------GC-------------------AACCGCCAGTGGCA-----ACAA---C---------------------------------------------------ACAACAA--------------------------CAGCAGCAACA---ACAAGT------GC------------A----------------------------------------------------------------------------------GCAG---------CAG----------------CACC
droPer2 scaffold_46:341470-341620 + AG-----CGCTACTCTCTGCTGAG----------------GCCCTTAACAG-----AGCCCT---------GTT----------------------AGCGC------------------------------------------------TACTCTTTGCCAGACTTAAC---------------------------------------G---GT-CCATTGAA-----------------------------------------------------------TGCTGCTCGTGTCGCATCGTATC---------------------G--------------------TGTCC----TCTGC-------------------AGCCGAAGAGAGACCAACTAGCCAGCAGTTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG---------CAG----------------TA--
droAna3 scaffold_12903:688433-688611 + TG-----CGTGGCTT-TCTCACCA----------------GCTATGA-CAA-----ATCGTT---------G-GCT---------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------------------------G----------------------------------------------------------G-------CT---------G--------------T-T--TC-----------------------------------------TGCAGCAGCA-ACAACAACAACAGCAGCAGCAAC-----------------------------------------------ACCGACGCCATCACTCAGCGATCGCCATGCGAGCTTATCTGAAAAGAGCGGGAAAAAGAGCGTCGGCAAAGAGAGTAGTTGATCGTGAAT---------CAG----------------CG--
droBip1 scf7180000395916:21481-21656 - TG-----CGCGGCTT-TCTCACCA----------------GCTATGA-CAA-----ATCGTT---------G-GCT---------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------------------------G----------------------------------------------------------G-------CT---------G--------------T-T--TC-----------------------------------------TGCAGCAGCA-GCAACAACAACCACACCAGCAAC-----------------------------------------------ACCGACGCCATAACTCAACGATCGCCATGCGAGCTTATCTGAAAAGAGCGGGAAAAAGAGCGGCGGCAAAGAGA---GCTGATCGTGAAT---------CAG----------------CG--
droKik1 scf7180000302677:1059974-1060126 - AG-----CATCAGCAACAG--GCG----------------GCAGTGG-CTGCCCATC--------------------------------------------AGCA------GCAACAACAGCAGCTGCAGCAGCAGCAGCAATTGCTGCAGTTGTCCAT-----CCAAC---------------------------------------------------------------------------AG--------------------------------------------GCGGCTC--------------------ATCACCATCA-GCAG-----------------------------G-AG--CAGCAC---CGTC--------------------------------------AA------------------------------------CAGC---AGCAGCAG------CAGCA-------------------------------------------------------------------------------------------------A---------CAC----------------CAGC
droFic1 scf7180000453903:228814-228976 - AG-----CAGCGCTG-CTGCTGCT----------------GT-ACAG-CAGC--A-ATTGCT---------GCC----------------------ACCGCC-----------------------------------------------TGGTACCTATCAATACCAAC-------------------------------AGGTGGGCGGCAATACCGTT---------------------------------------------------------------------G---------------TCGTTGCCGTGCGTCATCAACAG-------CA---------G--------------T-T--GC-----------------------------------------AACAGCAGCA-GCAGCAA--------------------------CAACAACAGCA---ACTGG------------------CCCT----------------------------------------------------------------------------------ACAC---------CAG----------------CAAC
droEle1 scf7180000491011:109282-109440 - AA-----CATCAGCAACAACTGCG----------------GCGGCAA-CAGC--AATG-GCA---------GCA----------------------GCAGCAGCG------AC---------AGCAGCAAC---------------------------------------------------------------------ATCTG--CGGCAACAACGGGGAG-----------------------------------------------------------CAGC---G---------------GCAGCGGCA----GCGGCAGCG-GCAG-----------------------------T-AGTACA---------ACC-----A------------------------------CA-ACGGCG-----------------------------------------GCAA------CCACAACAGCAACCTGT----------------------------------------------------------------------------------GTGA---------CAG----------------CAGC
droRho1 scf7180000776808:11995-12133 - AT-----CGCGATGA-TGATGATG----------------GTGATGC-GAAT--ATTG-GCA-----------GCACGAG---------------------TGCA------AC---------A----------------------G-----------------------------CAA------------------CAGCAACAG-----------------------------------------------------CAAAAGCAACGGCAACTGTA----------------------------------------ACAGCAACA-GCAA-----------------------------G-AA--CAACAGCAACCCC--------------------------------------AA------------------------------------CTAT---AACAGCAA------TAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAAC
droBia1 scf7180000302428:7570243-7570378 + GC-----TGCAGTTA-C--------------------------------AA-----ATTGCT---------GCAAACAAGTTTTTGGGAA------AACGTTGCGTCGCCGCC---------AGCGCC-------------T---------------------------------------------------CAGT-----------CG---------CTTT-----------------------------------------------------------CACT---A------A----GCCC----------------GC-------------------AGCCGCCGCACTTG-----A-C--ACT---------------------------------------------------GCGACAA--------------------------TAACAGCAGCA---ACAA------CTGC-------------------------------------------------------------------------------------------------GA---------CAG----------------CA--
droTak1 scf7180000415762:329283-329425 - CA---------ACTC-CGATGGCA----------------GCTACAA-CCG-----ATCACT---------GAACTCAAACTCCCA-------------------------GG---------G----------------------A----------G--------GAGGAGGAGTAGGAGGCGGATCTGGAGCCAGC-----------------------------------------------------------------------A----------------------------------------------------------A-------CT---------A--------------T-C--GCTCCGG---CCGC--------------------------------------AA------------------------------------CTAC---GAGAACGG------CAATG-------------------------------------------------------------------------------------------------G---------GAGCAACGGCCCACCGTCACGTT
droEug1 scf7180000405770:877-1007 - AG-----CGGCAATGACAACAGCG----------------GCAGTGA-CAA-----AA-GCGGCCGCGACA--AC--------------------------AGCG------GC---------AGCGACAAC-----------------------------------------------------------------------------A---GC------------------------------------------------GGCAGCGACAA---------CAGC---G-------------------------------GCAGCG-ACAA-----------------------------C-AA--CGGCAG---CGAC--------------------------------------A-------A-----------------------------CAAC---GGCAGCAA------CAA-------------A----------------------------------------------------------------------------------GCGG---------CAG----------------CAAC
dm3 chrX:19047572-19047709 - GAGTGTGCGTGGCTT-TCTCACCG----------------CCTATGA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTGTGGCACCA-GCAACAACAACAGCGACAACAACCACCGA-------------------------------------------------------TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGTGACTCAGTTGTTGGCG----------------TTGT
droSim2 x:13038431-13038593 - AA-----CGGCAACTGCCGCGGCG----------------GCAACAT-CGA-----CC-TCAACCTCAGCA--ACAT--C-TGCGG--CGGCAACGGCAGCAGCG------AC---------AGC--------------------------------------------------------------------------------------------------------------------------------------------AGCAACATCTGCGTCCACAACG--------GC----T----------------ACGGCGGCG-GCGG------------------GGAGTA-----G-T--AAT---------------------------------------------------ACAACAA--------------------------CAACAACGGCG---GCAA------CCACAACAGCAAC----------------------------------------------------------------------------------------------------------------------CTGT
droSec2 scaffold_8:1336892-1337029 - GTGTGTGCGTGGCTT-TCTCACCG----------------CCTATGA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTGTGGCACCA-GCAACAACAACAGCGACAACAACCACCGA-------------------------------------------------------TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGTGACTCAGTTGTTGGCG----------------TTGT
droYak3 2L:2082171-2082322 - AG-----CGGCGCCGACGACGTCG----------------ACGTCAT-CGA-----ATCGCG---------TAGCCCAGGC--------------------C------------------------------------------------------------------------------------------------------------------------ATGCTGCTGATGTCGACGTCGCAGCAGCAGCAGCAGCAGTGGCAGCAACATCAGTG-------------------------------------------GCAGCA-ACAG-----------------------------C-AA--CTGCAG---CAGC--------------------------------------AG------------------------------------CAAC---AGCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAGC
droEre2 scaffold_4929:9839575-9839720 + AG-----CATCACTGGCGCCCGGT----------------AC-GCAT-CAA-----TT-GCA---------GCGCG---------------------------------------CGACGGCAGCCAGCGGAGGCG-----------------------------GAGC---------------------------------------------------------TGGTGCTGGGGGCGTGGCAG--------------------------------------------GCGCCTC--------------------GACAGCAGCG-GCAC-----------------------------T-TACACTCCAG---CAAC--------------------------------------AT------------------------------------CAGC---ATCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AG-----CGTCATTTTCTACTGCG----------------GCTATGA-CAA-----ATTGCT---------GAGCGCCTTTT-------------------TGCA------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGATAGCATTGAG-----------------------------------------------------------CGCTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----ACTGT-------------------G-----A------------------------GAGCGACG-ACAACAA--------------------------CAACAATATCG---CCGAGT-----------------------------------------------------------------------------------------------------GTGAGT---------CAG----------------CGTCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................221326.00326160814141246
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----................................................................................................................................................................................................................................................................23176.007640261288
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----A...............................................................................................................................................................................................................................................................23173.0073282152143
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----................................................................................................................................................................................................................................................................22144.00442407292
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCG......................................................................................................................................................................................................................................................................20134.003440141204
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCG......................................................................................................................................................................................................................................................................21134.00349112912
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................21124.00241602150
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................22123.00231320071
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGC.....................................................................................................................................................................................................................................................................22120.00201303310
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----A...............................................................................................................................................................................................................................................................24119.0019604414
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGC.....................................................................................................................................................................................................................................................................21119.00191004320
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................23113.00131001011
........................................................................................................A------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................23111.0011310160
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................1917.007700000
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCC----................................................................................................................................................................................................................................................................2316.006000060
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----T...............................................................................................................................................................................................................................................................2416.006401010
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----AC..............................................................................................................................................................................................................................................................2415.005001220
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................2415.005000104
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................2115.005300002
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CC.......................................................................................................................................................................................................................................................................2015.005102200
..............................................................................................................................................................................................................................................................................................GGCTACGTCGC----TATC---------------------G--------------------CCGCT----A...............................................................................................................................................................................................................................................................2214.004400000
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................2314.004201010
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................2313.003000003
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCC----................................................................................................................................................................................................................................................................2213.003000030
..............................................................................................................................................................................................................................................................................................GGCTACGTCGC----TATC---------------------G--------------------CCGCT----................................................................................................................................................................................................................................................................2113.003200100
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----T...............................................................................................................................................................................................................................................................2313.003101010
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----C...............................................................................................................................................................................................................................................................2412.002000101
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----AA..............................................................................................................................................................................................................................................................2412.002101000
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................2012.002101000
................................................................................................................................................................................................................................................................................................CTACGTCGC----TATC---------------------G--------------------CCGCT----A...............................................................................................................................................................................................................................................................2011.001000100
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----TA..............................................................................................................................................................................................................................................................2411.001001000
...........................................................................................................................................................................................................................................................................................GCTGGCTACGTCGC----TATC---------------------G--------------------CCG......................................................................................................................................................................................................................................................................2211.001000100
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------C........................................................................................................................................................................................................................................................................1811.001000100
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----ATC.............................................................................................................................................................................................................................................................2511.001000100
...........................................................................................................................................................................................................................................................................................GCTGGCTACGTCGC----TATC---------------------G--------------------CCGC.....................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGCT----TT..............................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCG----T...............................................................................................................................................................................................................................................................2311.001000100
........................................................................................................A------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..........................................................................................................................G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----AT..............................................................................................................................................................................................................................................................2411.001100000
................................................................................................................C---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..........................................................................................................................G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................CTGGCTACGTCGC----TATC---------------------G--------------------CCGTC----................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................TGGCTACGTCGC----TATC---------------------G--------------------CCGCT----G...............................................................................................................................................................................................................................................................2311.001000100
........................................................................................................A------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
........................................................................................................A------GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................GC---------G----------------------A-----------------------------CGA------------------CAGCGACTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droVir3
AG-----CGTCATTTGCTTCTTTG----------------GCTATGA-CAA-----ATTACT---------GAGCGCCTTTTTGCA--TA------GCAG--CCA------GC---------G----------------------T-----------------------------CGA------------------CAGCGACTGCGCAGCGTCGCTATTGAG-----------------------------------------------------------CGCTGGCTGCGACGC----TATC---------------------G--------------------CCGGC----TCTGC-------------------G-----A------------------------------GA-GCGACAG--------------------------CAACAGCAGCG---CTGAGC-----------------------------------------------------------------------------------------------------GTGAGT---------CAG----------------CGCTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................................GA------------------CAGCGACTGCGCAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CGCTATTGAG-----------------------------------------------------------CGCTGGCTGCG...............................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AG-----------------------------------------------------------CGCTGGCTGCGACGC----TATC---------------------G--------------------CCGGC----................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................TGC-------------------G-----A------------------------------GA-GCGACAG--------------------------CAACAGCAGC.....................................................................................................................................................2411.0010000000010000000000000000000000000000000000000000000000000000000000000000000000
.................TTCTTTG----------------GCTATGA-CAA-----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000010000000000000000000000000000000000000000000000000
droGri2
GG-----CAGCAGCTACTGCTGCG----------------GCTGCGT-CAA-----TT-GCT---------GGA----------------------GCTGCTTCA------AC---------G----------------------C-----------------------------CGG------------------CAGCTGCTAC--TAAGATGGCTGGTTT-----------------------------------------------------------CGCT---G-------------------------------GCA--AG-------CGACTGCAATTG-----------------------------------------------------------------------------------------------CCGCGGGCCAACAACAATGT-G---CCCAGTGTGATTA-------------------------------------------------------------------------------------------------TGC---------TGC----------------CG--SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droWil2
AG-----CGCCAACATCGACAACG----------------ACCACGA-CGAC--AACT-GCA-----------GCACCAAC--------------------TACA------AC---------GACTACAACAACAGCAGCAACGACAACAACCACAGAA-----CCAAC------------------------------------------------------------------------------------------------------------------------A---------------ACGACAACG----ACGGCTGCA-ACAACAACT---------A--------------C-C--GCTGCAA---CGACG-----A------------------------------CA-ACAACA-----------------------------------------GCAG------CAACGACAACAACCACA----------------------------------------------------------------------------------GAAC---------CAA----------------CGACSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................................................................................................................................................................................................................................................TGCAA---CGACG-----A------------------------------CA-ACAACA-----------------------------------------GCA..............................................................................................................................................2211.00101000
dp5
AG-----CATCACCAGCAACAATTGAGCATGTATGGTCAGGCAATG----GGCCAGCA-GCA---------GCA----------------------------------------GCAACCACAGCCAACGCAGCAG-----------------------------CAAC---------AAGTGGT------------------------------TGTGC--------------------------------------------------------------CACCAGTGGCGGCAC----AGCC----------------GC-------------------AACCGCCAGTGGCA-----ACAA---C---------------------------------------------------ACAACAA--------------------------CAGCAGCAACA---ACAAGT------GC------------A----------------------------------------------------------------------------------GCAG---------CAG----------------CACCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................TCAGGCAATG----GGCCAGCA-GCA---------GCA----------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
.......................................................................................................................................................................................................................................................................................................AC----AGCC----------------GC-------------------AACCGCCAGT....................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................CACCAGTGGCGGCAC----AGCC----------------...................................................................................................................................................................................................................................................................................................1911.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAAGT------GC------------A----------------------------------------------------------------------------------GCAG---------CA.....................1911.0010010000000
................................................................................................................................................................................................................................................................................................................................................................GGCA-----ACAA---C---------------------------------------------------ACAACAA--------------------------CAGCAG.........................................................................................................................................................2211.0010100000000
.............................................................................................................................CAACGCAGCAG-----------------------------CAAC---------AAGTGGT------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................CAAC---------AAGTGGT------------------------------TGTGC--------------------------------------------------------------CACCAGTGGC................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................AATTGAGCATGTATGGTCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................CAGCA-GCA---------GCA----------------------------------------GCAACCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.1120200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA--------------------------CAGCAGCAACA---ACA..............................................................................................................................................21200.0510100000000
droPer2
AG-----CGCTACTCTCTGCTGAG----------------GCCCTTAACAG-----AGCCCT---------GTT----------------------AGCGC------------------------------------------------TACTCTTTGCCAGACTTAAC---------------------------------------G---GT-CCATTGAA-----------------------------------------------------------TGCTGCTCGTGTCGCATCGTATC---------------------G--------------------TGTCC----TCTGC-------------------AGCCGAAGAGAGACCAACTAGCCAGCAGTTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG---------CAG----------------TA--SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droAna3
TG-----CGTGGCTT-TCTCACCA----------------GCTATGA-CAA-----ATCGTT---------G-GCT---------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------------------------G----------------------------------------------------------G-------CT---------G--------------T-T--TC-----------------------------------------TGCAGCAGCA-ACAACAACAACAGCAGCAGCAAC-----------------------------------------------ACCGACGCCATCACTCAGCGATCGCCATGCGAGCTTATCTGAAAAGAGCGGGAAAAAGAGCGTCGGCAAAGAGAGTAGTTGATCGTGAAT---------CAG----------------CG--SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACAACAACAGCAGCAGC............................................................................................................................................................................21200.153030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-ACAACAACAACAG...................................................................................................................................................................................19200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCA...........................................................................................................................................................................19200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAAC-----------------------------------------------A.........................................................................................................................18200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-ACAACAACAACAGCAGC...............................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAAC-----------------------------------------------A.........................................................................................................................20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAACAACAACAGCAGCAGCA...........................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCA..............................................................................................................................................................................18200.051000100
................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-ACAACAACAACAGCAGC...............................................................................................................................................................................20200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-ACAACAACAACAGC..................................................................................................................................................................................18200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAAC-----------------------------------------------A.........................................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAAC-----------------------------------------------A.........................................................................................................................19200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAA..........................................................................................................................................................................20200.051000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-ACAACAACAACAGCAGC...............................................................................................................................................................................21200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-ACAACAACAAC.....................................................................................................................................................................................19200.051010000
droBip1
TG-----CGCGGCTT-TCTCACCA----------------GCTATGA-CAA-----ATCGTT---------G-GCT---------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------------------------G----------------------------------------------------------G-------CT---------G--------------T-T--TC-----------------------------------------TGCAGCAGCA-GCAACAACAACCACACCAGCAAC-----------------------------------------------ACCGACGCCATAACTCAACGATCGCCATGCGAGCTTATCTGAAAAGAGCGGGAAAAAGAGCGGCGGCAAAGAGA---GCTGATCGTGAAT---------CAG----------------CG--SizeHit CountTotal NormTotal
No Reads
droKik1
AG-----CATCAGCAACAG--GCG----------------GCAGTGG-CTGCCCATC--------------------------------------------AGCA------GCAACAACAGCAGCTGCAGCAGCAGCAGCAATTGCTGCAGTTGTCCAT-----CCAAC---------------------------------------------------------------------------AG--------------------------------------------GCGGCTC--------------------ATCACCATCA-GCAG-----------------------------G-AG--CAGCAC---CGTC--------------------------------------AA------------------------------------CAGC---AGCAGCAG------CAGCA-------------------------------------------------------------------------------------------------A---------CAC----------------CAGCSizeHit CountTotal NormTotal
No Reads
droFic1
AG-----CAGCGCTG-CTGCTGCT----------------GT-ACAG-CAGC--A-ATTGCT---------GCC----------------------ACCGCC-----------------------------------------------TGGTACCTATCAATACCAAC-------------------------------AGGTGGGCGGCAATACCGTT---------------------------------------------------------------------G---------------TCGTTGCCGTGCGTCATCAACAG-------CA---------G--------------T-T--GC-----------------------------------------AACAGCAGCA-GCAGCAA--------------------------CAACAACAGCA---ACTGG------------------CCCT----------------------------------------------------------------------------------ACAC---------CAG----------------CAACSizeHit CountTotal NormTotal
No Reads
droEle1
AA-----CATCAGCAACAACTGCG----------------GCGGCAA-CAGC--AATG-GCA---------GCA----------------------GCAGCAGCG------AC---------AGCAGCAAC---------------------------------------------------------------------ATCTG--CGGCAACAACGGGGAG-----------------------------------------------------------CAGC---G---------------GCAGCGGCA----GCGGCAGCG-GCAG-----------------------------T-AGTACA---------ACC-----A------------------------------CA-ACGGCG-----------------------------------------GCAA------CCACAACAGCAACCTGT----------------------------------------------------------------------------------GTGA---------CAG----------------CAGCSizeHit CountTotal NormTotal
No Reads
droRho1
AT-----CGCGATGA-TGATGATG----------------GTGATGC-GAAT--ATTG-GCA-----------GCACGAG---------------------TGCA------AC---------A----------------------G-----------------------------CAA------------------CAGCAACAG-----------------------------------------------------CAAAAGCAACGGCAACTGTA----------------------------------------ACAGCAACA-GCAA-----------------------------G-AA--CAACAGCAACCCC--------------------------------------AA------------------------------------CTAT---AACAGCAA------TAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAACSizeHit CountTotal NormTotal
No Reads
droBia1
GC-----TGCAGTTA-C--------------------------------AA-----ATTGCT---------GCAAACAAGTTTTTGGGAA------AACGTTGCGTCGCCGCC---------AGCGCC-------------T---------------------------------------------------CAGT-----------CG---------CTTT-----------------------------------------------------------CACT---A------A----GCCC----------------GC-------------------AGCCGCCGCACTTG-----A-C--ACT---------------------------------------------------GCGACAA--------------------------TAACAGCAGCA---ACAA------CTGC-------------------------------------------------------------------------------------------------GA---------CAG----------------CA--SizeHit CountTotal NormTotal
No Reads
droTak1
CA---------ACTC-CGATGGCA----------------GCTACAA-CCG-----ATCACT---------GAACTCAAACTCCCA-------------------------GG---------G----------------------A----------G--------GAGGAGGAGTAGGAGGCGGATCTGGAGCCAGC-----------------------------------------------------------------------A----------------------------------------------------------A-------CT---------A--------------T-C--GCTCCGG---CCGC--------------------------------------AA------------------------------------CTAC---GAGAACGG------CAATG-------------------------------------------------------------------------------------------------G---------GAGCAACGGCCCACCGTCACGTTSizeHit CountTotal NormTotal
No Reads
droEug1
AG-----CGGCAATGACAACAGCG----------------GCAGTGA-CAA-----AA-GCGGCCGCGACA--AC--------------------------AGCG------GC---------AGCGACAAC-----------------------------------------------------------------------------A---GC------------------------------------------------GGCAGCGACAA---------CAGC---G-------------------------------GCAGCG-ACAA-----------------------------C-AA--CGGCAG---CGAC--------------------------------------A-------A-----------------------------CAAC---GGCAGCAA------CAA-------------A----------------------------------------------------------------------------------GCGG---------CAG----------------CAACSizeHit CountTotal NormTotal
No Reads
dm3
GAGTGTGCGTGGCTT-TCTCACCG----------------CCTATGA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTGTGGCACCA-GCAACAACAACAGCGACAACAACCACCGA-------------------------------------------------------TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGTGACTCAGTTGTTGGCG----------------TTGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGC...........................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGC---------GAAGGAGAGCG---------------------CGT....................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
...................CACCG----------------CCTATGA-CAA-----ATCGTT---------CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGC...........................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCG---------------------CGTGACTCAGTTGTTGGCG----------------....2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACCA-GCAACAACAACAGCGACA..............................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACAACAACCACCGA-------------------------------------------------------TC..........................................................................................................2111.001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-------------TATCGGC---------GAAGGAGAGC.............................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGT-------------TATCGGC---------GAAGGAGAG..............................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCAGTTGTTGGCG----------------TT..2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-------------TATCGGC---------GAAGGAGAGCG---------------------C......................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCGACAACAACC........................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGCG---------------------CGTGACTCAGTTGTTGG......................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCA-GCAACAACAACAGC..................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------CGTGACTCAGTTGTTGGC.....................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGC---------GAAGGAGAGCG---------------------CGTGACTCA..............................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGC---------GAAGGAGAGCG---------------------CGTGA..................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACCGA-------------------------------------------------------TCAACGGT-------------TATCGGC---------.......................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGCACCA-GCAACAACAAC.....................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................CG----------------CCTATGA-CAA-----ATCGTT---------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGG............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGT....................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTGTGGC.....................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------GAAGGAGAGCG---------------------CGTGAC.................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...TGTGCGTGGCTT-TCTCACCG----------------CCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTCACCG----------------CCTATGA-CAA-----ATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CG.....................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT..............................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCT..........................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGAGCG---------------------CGTGACC................................1820.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACCA-GCAACAACAACAGC..................................................................................................................................................................................1940.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AA-----CGGCAACTGCCGCGGCG----------------GCAACAT-CGA-----CC-TCAACCTCAGCA--ACAT--C-TGCGG--CGGCAACGGCAGCAGCG------AC---------AGC--------------------------------------------------------------------------------------------------------------------------------------------AGCAACATCTGCGTCCACAACG--------GC----T----------------ACGGCGGCG-GCGG------------------GGAGTA-----G-T--AAT---------------------------------------------------ACAACAA--------------------------CAACAACGGCG---GCAA------CCACAACAGCAAC----------------------------------------------------------------------------------------------------------------------CTGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................GCAACGGCAGCAGCG------AC---------AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................CGGCGGCG-GCGG------------------GGA...................................................................................................................................................................................................................................................................1520.50100000000100000000
droSec2
GTGTGTGCGTGGCTT-TCTCACCG----------------CCTATGA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTGTGGCACCA-GCAACAACAACAGCGACAACAACCACCGA-------------------------------------------------------TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGTGACTCAGTTGTTGGCG----------------TTGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGT-------------TATCGGC---------GAAGGAGAGCG---------------------CGT....................................2911.0010100
.............................................GA-CAA-----ATCGTT---------CAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT..............................................................................................................................................................................................................1911.0010010
droYak3
AG-----CGGCGCCGACGACGTCG----------------ACGTCAT-CGA-----ATCGCG---------TAGCCCAGGC--------------------C------------------------------------------------------------------------------------------------------------------------ATGCTGCTGATGTCGACGTCGCAGCAGCAGCAGCAGCAGTGGCAGCAACATCAGTG-------------------------------------------GCAGCA-ACAG-----------------------------C-AA--CTGCAG---CAGC--------------------------------------AG------------------------------------CAAC---AGCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAGCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AGCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAGC24200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CAAC---AGCAGCAG------CAACA-------------------------------------------------------------------------------------------------.................................19200.05101000000000
droEre2
AG-----CATCACTGGCGCCCGGT----------------AC-GCAT-CAA-----TT-GCA---------GCGCG---------------------------------------CGACGGCAGCCAGCGGAGGCG-----------------------------GAGC---------------------------------------------------------TGGTGCTGGGGGCGTGGCAG--------------------------------------------GCGCCTC--------------------GACAGCAGCG-GCAC-----------------------------T-TACACTCCAG---CAAC--------------------------------------AT------------------------------------CAGC---ATCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CAGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................G---------------------------------------CGACGGCAGCCAGCGGAGGCG-----------------------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.....................GGT----------------AC-GCAT-CAA-----TT-GCA---------GCGCG---------------------------------------CGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------CAGC---ATCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CA..2511.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------AT------------------------------------CAGC---ATCAGCAG------CAAC...................................................................................................................................2120.5011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ATCAGCAG------CAACA-------------------------------------------------------------------------------------------------A---------CAG----------------CA..20120.0810000010

Generated: 10/20/2015 at 11:19 PM