ID:

dmo_726

 Coordinate:

scaffold_6473:10171432-10171617 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.4 -20.2 -20.2

Flybase annnotation

exon [dmoj_GLEANR_16472:6]; CDS [Dmoj\GI15760-cds]; exon [dmoj_GLEANR_16472:5]; CDS [Dmoj\GI15760-cds]; intron [Dmoj\GI15760-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+
(CGA)nSimple_repeatSimple_repeat+
GA-richLow_complexityLow_complexity+
mature
  1. scaffold_5597:1080-1101 -
  2. scaffold_6473:9270596-9270617 -
  3. dmo_726  scaffold_6473:10171472-10171493 +
  4. scaffold_6500:929250-929271 +
  5. scaffold_6500:22476284-22476305 +
  6. scaffold_6540:18208474-18208495 +
  7. scaffold_6680:21023312-21023333 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCACAACAACTACAAAACTAATCACAGGCCTCGAACACTGAAAAACCGCGTCATCGACGACTACGATGAGCAGGAGGAGGAGGTGGAGGAGCAGGAGGAGGAGCAGGAGGAGGATGAGTATGAAGATAACAACGACAGCGACAGCGACGATGACGACGACGACGACGACGATGTTGATGATGAGCATGAGGATGAAGACGATTACGATGAGGATGATTATGAAGCTGGCAAACAGCCGCTGATGGGCATCGCTCGACGCAATCAAGCCATTTGCCGGCACTGCCA
**************************************************((((((((((.((((..................))))....((..........)).........................((.((...((....))..)).)).((.((....)).))....))))))))))...(((((..((.....((....))......))..)))))...(((.....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V110
male body		 M046
female body
...........................................................................................................................................................................................................................ATCAAACTCGCAAACAGCCGCT............................................. 22 3 1 1.00 1 1 0 0
..........................................................................................AGCAGGAGGAGGAGCAGGAGGA.............................................................................................................................................................................. 22 0 7 0.14 1 0 1 0
........................................................................................................................................................................ACTAAGTTGATGATGAGCAC.................................................................................................. 20 3 11 0.09 1 0 1 0
......................................................................................................................................................................CCACTAAGTTGATGATGAGC.................................................................................................... 20 3 13 0.08 1 0 0 1
...........................................................................................................................................................GACGACGAAGACGACGATGT............................................................................................................... 20 1 14 0.07 1 0 1 0
................................................................................................................................................................................................................GGTGGATGATTATGAAGCTGT......................................................... 21 3 16 0.06 1 0 1 0
............................................................................................................................................................................................GAGGATTCTGACGATTACG............................................................................... 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

TGGTGTTGTTGATGTTTTGATTAGTGTCCGGAGCTTGTGACTTTTTGGCGCAGTAGCTGCTGATGCTACTCGTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCGTCCTCCTCCTACTCATACTTCTATTGTTGCTGTCGCTGTCGCTGCTACTGCTGCTGCTGCTGCTGCTACAACTACTACTCGTACTCCTACTTCTGCTAATGCTACTCCTACTAATACTTCGACCGTTTGTCGGCGACTACCCGTAGCGAGCTGCGTTAGTTCGGTAAACGGCCGTGACGGT
**************************************************((((((((((.((((..................))))....((..........)).........................((.((...((....))..)).)).((.((....)).))....))))))))))...(((((..((.....((....))......))..)))))...(((.....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V049
head
 M046
female body
.........................................................................................................................................................................................................................................................................TTGGTAAATGGCTGTGACGGT 21 3 10 2.10 21 12 9 0
........................................................................................................................................................................................................................................................................TTTGGTAAAGGGCTGTGACGGT 22 3 1 2.00 2 2 0 0
.........................................................................................................................................................................................................................................................................TCGGTAGATGGCTGTGACGGT 21 3 3 1.00 3 0 3 0
........................................................................................................................................................................................................................................................................TTTGGTAAATGGCTGTGACGGT 22 3 6 1.00 6 6 0 0
..........................................................................................................................................................................................................................................................................TGGTAAAGGGCTGTGACGGT 20 3 6 0.50 3 1 2 0
.........................................................................................................................................................................................................................................................................TTGGTAAAGGGCTGTGACGGT 21 3 2 0.50 1 1 0 0
.........................................................................................................................................................................................................................................................................TCGGTAAATTGCTGTGACGGT 21 3 5 0.40 2 0 2 0
........................................................................................................................................................................................................................................................................TTCCGTAAATGGCTGTGACGGT 22 3 4 0.25 1 0 1 0
...........................................................................................................................................................................................................................................................................GGTAAATGGCTGTGACGGT 19 2 4 0.25 1 1 0 0
.........................................................................................................................................................................................................................................................................TGGGTCTACGGCCGTGACGGT 21 3 6 0.17 1 0 1 0
.........................................................................................................................................................................................................................................................................TCGGTAAATGGGTGTGACGGT 21 3 7 0.14 1 1 0 0
.........................................................................................................................................................................................................................................................................TCGGTCGACCGCCGTGACGGT 21 3 12 0.08 1 0 1 0
....................................................................................................................................................................CTGCTGCTTCAACGACTA........................................................................................................ 18 2 20 0.05 1 0 0 1
...........................................................................................................................................................................................................................................................................GGTAAATGGCGCTGACGGT 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:10171382-10171667 + dmo_726 AC-CACAACAACTACAAAA------CTAATCACAG--------------------G------C--CTCGAACACT------------------------------------------------GAAAAACCGCGTCATC-----------------GACGAC------------TACGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGGAGGAGGTGGAGGAGCAGGAGGAGG------AGCAGGAGGAGGA---TGA---GTA---------------------------------------------------------------------------------------------------------------------------------------------TGAAGATAACA--------------------------------AC-GACAGCGACA------GCGACG----------------------------------------ATGACGAC---------------------GAC------GAC---GACG---ACGATGT------------------------------------------------------TGATGATGAGCAT----------------------------------------------------------------------------------------------------GAG---------------GA--------------------------------------TGAAGACGATTACGATGAG---------------------------------------------GA-------------TGA----------------------------------TTATGAAGCTGG---CAAACAGCCGCTGATGGGCAT---------------------------------------------------------------------CGCTCGACGC----------------------------------------------------------------------AATCAAGCCATT-TGCCGGCACTGCCA
droVir3 scaffold_12970:11178224-11178494 - AC-CATAGCAAATGCAAAA------CTAATCACAG--------------------G------C--CTCG-----------------------------------------------------------------------------------------------CCGCGACTATGAACCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGAAGAAAATGAGGCGGAGTTTGAGTACG------ATAATGATGAGGACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGATGATG-------------------------------------------------------------------GTG------------------GTGATGATGATGACGATGAATATTATGA-----------------TGAT---------GA------------------------------------------------------CGA---T-GCGGACTT-------------------------GGATAACTTTGAGAATGG---CGAACAGCTGCTGCTGGGTCT---------------------------------------------------------------------GCCTCAGCGC----------------------------------------------------------------------AGTCAATCCATT-TGCCGACACTGCCT
droGri2 scaffold_15203:3151268-3151529 - AC-AACAACTACCAAGCTA------A---TCATAG--------------------G------C--ACCGCCCCCT------------------------------------------------GAA-----------------------------------------------CGATATACAGCTGGATGAGCGAGATGAAGATGACGATGA-------------------------------------------AGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------GATGACGACAACGATGGAGATGAGG---AC------GAGAATGAAG------------------------------------CAGATGCGGAGTACGATAACG---------------ATAACGATAATGATG-----------------------------ATTAT-----------------------------------------------GATGTGGAAGAGTATGCAGA-----------------------------------------------------------------------------------------------------------TGA---T-GCCGACTT-------------------------AGATGATTATGAATACAG---CGAGGAGCTG------------------------------------------------------------------------------ATGCCTCCGCGC----------------------------------------------------------------------AGTCAATCCATT-TGCCGTCACTGCCA
droWil2 scf2_1100000004515:3427892-3428140 - AT-CATATTGAATGGAAAG------AC--TGGCGG--------------------C------A---------------------------------------------------------------------GCTTAA----------------------------------------------------------------------------------------------------------------TGCC-----CA-------------------------------------------------------------------------------------------TTAGGGCATCATTAGCATTGGCCGAAGAACTGG---AAAAAGAGCTGGAGCCAGAGCATACCACCGCGAAAGTAAAGGA---TGA------------------------------------------------------------------------------------------------------------------------------------------------------GGA----------------------------------------------------------------------------------------------------------GCATTACAAGA---------------TCAATGTTAAT---A------------------------------------------------------------------------------------ATGATGATGACGACGACGAAG-------------------------------------------------------------------AGG------------------ATGAGGATAATGAT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TGATGATCAGCAGC--------------------------------CAT------------------------------------------------------T----G--------AA--TCATGAAACCACA-----------------------------------GCCATAT-------------------TATCGACA
dp5 XR_group6:8581622-8581911 - dps_3105 AT-CACAGCATCAGCATCA------CA-GTA-CAA--------------------G-------------------------CA-----------CA------------------------GTCACGCA----------------------------------------------------------------------------------------------------------------GAACACTCTAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------AGTATCCATAAAATTAATAACAACCAAATAGTCGCCGGACC---AGCGGCCCTGGGGA---AGCCCGCACCGG--------------------GGGCTGATCCCGGGCCTGTTGCTACCGGCGGCGCCA--------------------------------CC-GACAAC-------------------------------------------------------------------------GATGACGACGCTGACGACGCTGAC---GACG---CTGACGA------------------------------------------------------CGACGACGAGTAC---------GATGA-----------------------------------GGACGATGAGG-------------------------------------------------------------------------------------------------------------AAGATGA---------------------------------------------------------TG-ATGA----------------------------------TAT------TGATGAT--GGAGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTGCAGG-----------------------------------------------------------TATAGCCG
droPer2 scaffold_14:1017457-1017740 + AC-CAAACCAAAAGTGTAA------CGCATGAAAATGAAACGGAAACGGAAATGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGC------------------------------------------------------------------AA---C----------------------------TG---------------------------------------------------------AGGCAAACGATGGGCTGGCGACCACAGTGCGTACAAAGCAAGAGCTCGAAG---------------------------------------ACG----------------------------------------AGAATGAG---------------------AAC------GAT---AACG---------------------------------------------------------------------------------ATAACGATAATGATAACCAAA-------------------------------------------------------------------ACG------------------AAAACGAAAACGAG-----------------------------------------GATGAAGA---------------T------------------------------GAAGATGA---G-GATGAGGCGATATTGCAGCCGCCCGCCACACTCGAAGA-----GCAGCTGG---TCAACAGCTACTGGCGACGCG---------------------------------------------------------------------GCTTCGAGAG----------------------------------------------------------------------CCC-----CAAT-CCGC--CGCCGACA
droAna3 scaffold_13248:137222-137507 - AC-CACAACAACCAGTCCC------ACGGCGCCCA--------------------C------------C-------ACCTCCA-----------CTGGCACCTCGAC--------------------GACCACGCCCTC-----------------CGCCAC------------CACCACTG------------------------------------------------------------------------------------GCACCA--------------------------------------------CCAGG---CGTTCGTTCCAGGAGGGCGATCTCCACC---------------------ACGAGGACGACG---AGGAGGATCTGGAGCTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCTCCT------TCGCCG----------------------------------------AGGAGGAG---------------------GAC------GAG---GACG---------------------------------------------------------------------------------ACGACGATGAGGAG------GGCCTG----------------------------------------------------------------------TTG---------------GA--------------------------------------CGAAGACGATCAGGAGGAGGACGACAACGATGGC------------------------------TTCTACAT---G-G-------------------------------------T---------------C--TCGCC--------------------------------CGC------------------------------------------------------C----G--------GAAACGGAGGCA----------------------------------------GCAACGG-------------------CAACAGCA
droBip1 scf7180000395898:42062-42303 + GC-AGCAACAGCCACATCA------GCAGTATCAG--------------------A------GGTTGCAGC----------CT----CAGGCAACTGTCACCACTGC-------------------------------------------------------------------------------------------------------AA----------------------------------------------CAGCAACAGCAGCAGCAAC--A-----------------------GGAACGCGCAACAGCAAT---TTTTATGCGTTAAACGGCGATACACAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------GA------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGACAAC---------------------------------------------AG-------------CAA----------------------------------CACTGGTACTGGGTACCAGCAAC---CCTTGAACTT-GTCGCAGGCATTGCTGT-----------------------------------------CGCCATCGCCGCCCTTGAAC----------------------------------------------------------------------GATCAAATCAGT-TTGCT-TTTTCCCA
droKik1 scf7180000302592:167257-167573 - GCCAGCAACAACTACTTGA------GGAGTCGCAG--------------------C------T--GTTC---------------------------------------------GATTCCATTGAAATATTAAATGAACGAAAATTTAATAAGCCA------AACGGCGGCCAGGAGCAGGA--------------------------------GCAGCACGG-------------------------------------------------------------------------GGCCAGAC---------------AG---GTGGATGAGGCCATTGGCGATATTGAGG----------------------------------------------------------------------------------------------------------------------------------ACAA-----------------------------------------------------------------------------------------------------TTT---------------GGATAATGATGAAGTATTGCCAACAGACAACGATAGC------GACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------GACGACGA--------------------------------------------------CGACGA------C--------------GATGTTGATGGAGAAGG------CGATGAGGAG------------------GGGAGCGAGAGCCTGGACATTAAGTTACCCCATGACAA---T-G-------------------------------------A---------------T--------------G---------------------------------------------------------------------------------------------------------------------------------GATTGCCC------------AACAAGAAAAACCCAAG-TGTCG-CATTAACA
droFic1 scf7180000453841:876399-876714 + AC-CACAACAACAACAACA------AAAACAACAA--------------------G-------------------------CA-----------CA------------------------GTCAACCA----------------------------------------------------------------------------------------------------------------GAACACTCTAACCAACAACAATAACAACAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AACATCATTAACAATAAGCTGGTGGCCAGTGGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTT----GTTGCAGGCAA-TGTTGCTCCGGGGAATGTTGCCCCTGGCGCCGGCA--------------------------------AT-GACATA----------------------------------------------------------------------------GACAACGCTGACGATG---ACGATTATG---ATGAGGA------------------------------------------------------CGACGACGAGGAC---------GA----------------------------------------------------------------------------------T------------------------GA------T--------------------------------------------GATGA---------------T------------------------------------GATGGTG-ATGA----------------------------------TAT------TGATGAT--GGAGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTACAGG-----------------------------------------------------------TATCGCCG
droEle1 scf7180000491280:4333349-4333632 - GC-AGCAGCAGCAGCAGAA------TCAGCAACG-CTACGAATACTACC-------------------AAAA-----------------------------------------------------------------------------------------------------CGAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGAGGAGGAGCAGGTGGAGGTTGAGGAGG------AGCGGGAGGAGGA---TCAAACGCA-----------C-----------TA---C---GACATCA-------------------------------------------------------------------------------------------------------------------------------------------------CC-AAC------------------ATCGATACCTAC-----C-AGAGCGGTCTGGG-------------------------------CCGGGGCGATG------AG---GACGACAGCG---------------------------------------------------------------------------------ATCGGCAG------TGCCTG--------------------------GTGGACGACGACGACGACGATG--------------AGGAGCCCTACGACGA-----------------------------------------------------AGAGGAGAACGATGC---------------C------------------------------GGCGACGA---G-G-------------------------------------A---------------C-----------------------------------TACTCGA------------------------------------------------------C----C--------AACTCGT---------------------------------------------TGGGCTC-------------------CGGCTCGG
droRho1 scf7180000778257:113957-114198 + AC-AACAACACCAGCAGTGGGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCATCAACGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------CAATGGCGGCACA---ACCAACTCCGGCGGCACC-GCGGA---TTCCGTGGTTGCGG---TGGATGACGATG---------------ACGACG---ACGATGGCG---GTG------------------ATCACCAGCGACAGGTGGACGATCGCCTGGAGCAGGATGCCG-----------------------------------------A---------------------CGAGGAGG--------------------------------AGGA------------------CCCGGA-----------------------------------------------------------------------------------------------------------TGA---C-GACGATGT----------------------------------------------------GGTGGTGGTGGGCA------------GTGCCAC----------------------------------------------------------CGCAAT--------GGCCAGG-GG------------------------AATTG---------------------------------------CCCAGCGA
droBia1 scf7180000301760:315045-315390 - GT-TGCTCATCCAGCAGCAACACCACC---TTCTG--------------------A------ACGGTCGCCGCATT-----ATAATCCAGGCAACGGGCAACTCGTCCGTGTTGGCCGCCAGCGA------------------------------------T------------ATCAAGGA------------------GG------------------------------------AGGA------------------------------------------------------------------------------------------------------------------------------------------TGAGG---AGGAGGA---GGATCCCGAG---C------TGAACGATGAGAATCTGCA---GGATATCGAAG--AGGAGGCTCAGGCAG---C----------------------------CGAGGCGGACGAGGAGCCCGAG--AGTACCACGCAGCATTTGTC----CACGCAGGTCA-A-----------------------------------GCTGGAGCTGGAAG-------------------------------------------------------------------------------------AGGAT------------------------------------G------ATGAGAT---------------------------------------------------------------GCCC------------------------G-----ACGAGGAGGAGGAAGAGGAGGAG-----------------------------------------------GACGACGA-----------------------------------------------------------------------------------------------------------------------------T-GAGGAGCA-------------------------GCAGCACGG------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGAGTA---CCAAATCAGTGCTGGCG-------------------CGGGCGGA
droTak1 scf7180000415209:211357-211640 - AT-CGCAGCATGCA--A---------CGACATCAG--------------------T------------C-------ACAAGCA-----------CA------------------------GTCAA-------------------------------------------------------------------------------------------------------------CAACAAGAACACTCTAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------AA---C---CACATCATTAACAATAAGCTGGTGGCCAGTGG---AACGACCTTGGGGC---AGCCGGCGACACATGTTGCCG-----------GTGTTGCTCCCGGGAATGTTGCTGCTGGCAC----------------------------------------------------------------------------------------------------------CGACAACAACGACATTGACAACGCCGACGATG---ACGAT---T---ATGAGGA------------------------------------------------------CGACGACGAGGAC---------GA------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATGA---------------T------------------------------GA-------------TGA----------------------------------TAT------TGATGAT--GGGGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTGCAGG-----------------------------------------------------------TATCGCCG
droEug1 scf7180000409462:3488795-3489017 - AC-GAGGATGACGAAGACA------ATAATGACGACGAGGAGGATGATG-------------------AAGA-----------------------------------------------------------------------------------------------------------------------------------------CAA-------------------------------------------TAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------GACGACGACGACGAGGATGACAAAG---ACAAT---A---ATGGAG------------------------------------ACGACGAGGAGGAGGATGACGAAGAAGAAAAT---------AATGG-----------------------------------GGACGACGAGGATGA--------------------------------------------------TGAAGA------C--------------GATAATAACGGAGACGA------TGAGGATAA------------------CGAAGATGATACCGGGGACGATGAG------GA-------------CGA----------------------------------CGA--------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------AA------------------------GATAATAA
dm3 chrX:1896699-1896952 + GC-ACCAGTTGCTGCGCAA------CCTGCCCAAG-----------------------------ATCAAGATCGAG-----AT-----------------------------CGGTTCCCAGCGC-------------------------------------------------------------------------------------------------------GATCCGGAGGAAGAGGAGTCGG------------------------------------------------------------------------------------------------------------------------------------------AGCAAGAGCTAGAGCAGGAGCCGG------AGCAAGAGCAGGA---TGT---------GCA-GTCCCGACCCTCAGCC-G---C---ATCCACGTCCATTTTG--------------------------------------------------------------------------------AAGACTTCACTGCTGAGCG----------------------------------------------------------------------------------------------------------GAGCGGCGGCGACGTTGGCCACCTTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------CGG---------------------------------------------------------------------------------------------------------------CAGCCGAGCAAATAGCCCG---------CTCCTCGGCCAGCT-------------------GCGACAC-------------------TGCCAGGG
droSim2 x:5372058-5372366 + AC-AACAACAACAACGAGC------ACAGCAGCAG--------------------CAGCAGCG-----ACAGCGAC-----AA-----------CA------------------------ACTAGCCA----------------------------------TGCCACGCCCACGGACAAGA------------------------------------------------------------------------------GCAACAGCAACAACA--------------------------------------------TG---GCACAT----------------------CCCATACATCCCTCGCAG------------------------------------------------------------------------------------C-----------AG---C---AACACCACCAACAACAGA-TACTGCACGAAGG---CGCCACGTTGCAGCAGCAACATGCAACGCACGTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTCCGCCGACAATACGCGCTTTATACCGCCA------------------ATGCTGCTGGTGAAGTCGCACTACGTGC-----------------CGCC---------GG--------------------------------------------------------------------------------------------------------------------CCAAAC-ATGCCAGCGAGC-------------ATGCGAC----------------------------------------------------------CACAAC--------AACACGA---------------------------------------------GCGACAA-------------------CAACGTCC
droSec2 scaffold_5:5646625-5646951 + AGCAGCAGCAACAGCAGCA------CC---ATCGC--------------------A------AGGCTCAGCCCTTC-----AA-------------------------------------------CTTCTATGCCCGC-----------------GACTAT------------TACTACCA------------------GC--------AA----------------------------------------------CATCAGCAGCAGCAACAGC--AGCAGT----------------------CACCCATCAGCAGCATGA---G------CAACGGCAACATGCGGC------------------------------------------------------------------------------------------A----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------AGCAACATCGACGCCAGCAGCAGC---TTCCGCCTGCGCAG---ACGAT---------------------------C--ATC---ATCG---ATGAGAGCGACAATGAGCTGGAGGAGGAGCAGCAGATGAGGCTGAGCTTTGAGCGGTACATGG-----------------------------------------A---------------------GCAGCTGA--------------------------------AGCA------------------GCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC-CCTACG---------------------ATCCCCA----------------------A---GAAACTTTGTGCAATAG-------------------CAACACCA
droYak3 X:18523355-18523656 + AG-C-CAACAAGTACAACG------C--GTCGA----------ACGAT----------------------------------T-----------CT------------------------GTCACGTCGGCGATTCAA----------------------------------------------------------------------------------------------------------------TGCGACTTCCATCACAACAACAACCACGCCGGGATCAACGAACGGCGACGAGAT---------------------------------------------------------------------------------------------------------------------AAGCACACGA---CGT---------CCG-TATGCGGCCTTGAACC-G---C---TCACGTAATCGCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCGCGAACCACAAC---CACCGACGGTGCGCAGGAGGAC---------------------GAT------------G------ATG------------------------------------------------------------------ACGATGACGATGATGATGATGATG-----------------------------ATGAT-----------------------------------------------GATGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAAGCAGCAGGCACCGCCACCAGCTGTCTTC--C------------TGC--AAACAAACCGCCATCGCG-CCCTAAAA
droEre2 scaffold_4690:4615889-4616146 + CC-AACAACAACAACAGCA------ACAACAATAGCAACAACTATGGCC-------------------ACAGC-----------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCTCGCAGAGCAGCATG------------------------------------------------------------------------------------------G---A------CGAA------------------------------------GA---GGAGGACGACGAGGAGGAGGACGAAGAGGAGG------AGGAGGAGCAGGA---TGTGTCGCA----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AAC------------------AGCAGCAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGGCGGAA--------C---------AGCAGCAGCGGGCTGCAGCAGCGGCAGCTGTAGTTGCAGCCGCAGTTAGTGC-GCTGCAC-----------------------------------------------------------------AACGGCAA-----CAAG-CAGCAGCACT-ACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AC-CACAACAACTACAAAA------CTAATCACAG--------------------G------C--CTCGAACACT------------------------------------------------GAAAAACCGCGTCATC-----------------GACGAC------------TACGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGAGGAGGAGGTGGAGGAGCAGGAGGAGG------AGCAGGAGGAGGA---TGA---GTA---------------------------------------------------------------------------------------------------------------------------------------------TGAAGATAACA--------------------------------AC-GACAGCGACA------GCGACG----------------------------------------ATGACGAC---------------------GAC------GAC---GACG---ACGATGT------------------------------------------------------TGATGATGAGCAT----------------------------------------------------------------------------------------------------GAG---------------GA--------------------------------------TGAAGACGATTACGATGAG---------------------------------------------GA-------------TGA----------------------------------TTATGAAGCTGG---CAAACAGCCGCTGATGGGCAT---------------------------------------------------------------------CGCTCGACGC----------------------------------------------------------------------AATCAAGCCATT-TGCCGGCACTGCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGGAGG------AGCAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141000001
droVir3
AC-CATAGCAAATGCAAAA------CTAATCACAG--------------------G------C--CTCG-----------------------------------------------------------------------------------------------CCGCGACTATGAACCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGAAGAAAATGAGGCGGAGTTTGAGTACG------ATAATGATGAGGACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGATGATG-------------------------------------------------------------------GTG------------------GTGATGATGATGACGATGAATATTATGA-----------------TGAT---------GA------------------------------------------------------CGA---T-GCGGACTT-------------------------GGATAACTTTGAGAATGG---CGAACAGCTGCTGCTGGGTCT---------------------------------------------------------------------GCCTCAGCGC----------------------------------------------------------------------AGTCAATCCATT-TGCCGACACTGCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.65330000000000000020200000000000000290000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------GTGATGATGATGACGATGAATAT..............................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTTTGAGAATGG---CGAACAGC.............................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
....ATAGCAAATGCAAAA------CTAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.6012000000130000001000000100000001021100100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.459000000002000000000000000000000050101000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------ATGATGATGATGATGATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.408000000000000000000000000000800000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.408100000202000000000000000200000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.306000000000000000000000500100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------ATGATGATGATGATGATGATG-------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................23200.255000000000000000000000000000005000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.204000000000000004000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------ATGATGATGATGATGATGATG-------------------------------------------------------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................25180.173000002000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATG-------------------------------------------------------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................22200.153000000010000000000000000000000020000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.132000000000000000101000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000010100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000020000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102001000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000100000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000100000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000020000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ATG---------------------------------------------------------------------------ATGATGATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000020000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000000000020000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000100000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000001000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000200000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------ATGATGATGATGATGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000200000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.091000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.061000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.061000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.061000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.061000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24180.061000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATG-------------------------------------------------------------------GTG------------------.....................................................................................................................................................................................................................................................................................................................................................................................24180.061000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------AT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------------ATGATGATGATGATGATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGA---TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATG-------------------------------------------------------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATG-------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------------------------------------------------------------------------------------------------------------------------------------------TGATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------------AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------A------ATG---------------------------------------------------------------------------ATGATGATGATGATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATG----------------------------------------------------------------------------------------------------ATGATG------------------------AT------------A------ATG---------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
droGri2
AC-AACAACTACCAAGCTA------A---TCATAG--------------------G------C--ACCGCCCCCT------------------------------------------------GAA-----------------------------------------------CGATATACAGCTGGATGAGCGAGATGAAGATGACGATGA-------------------------------------------AGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------GATGACGACAACGATGGAGATGAGG---AC------GAGAATGAAG------------------------------------CAGATGCGGAGTACGATAACG---------------ATAACGATAATGATG-----------------------------ATTAT-----------------------------------------------GATGTGGAAGAGTATGCAGA-----------------------------------------------------------------------------------------------------------TGA---T-GCCGACTT-------------------------AGATGATTATGAATACAG---CGAGGAGCTG------------------------------------------------------------------------------ATGCCTCCGCGC----------------------------------------------------------------------AGTCAATCCATT-TGCCGTCACTGCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------------------------------------------------------AGTCAATCCATT-TGCCGTCACTGCC.2711.00110
...................................................................................................................................................................................................GATGAAGATGACGATGA-------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25110
droWil2
AT-CATATTGAATGGAAAG------AC--TGGCGG--------------------C------A---------------------------------------------------------------------GCTTAA----------------------------------------------------------------------------------------------------------------TGCC-----CA-------------------------------------------------------------------------------------------TTAGGGCATCATTAGCATTGGCCGAAGAACTGG---AAAAAGAGCTGGAGCCAGAGCATACCACCGCGAAAGTAAAGGA---TGA------------------------------------------------------------------------------------------------------------------------------------------------------GGA----------------------------------------------------------------------------------------------------------GCATTACAAGA---------------TCAATGTTAAT---A------------------------------------------------------------------------------------ATGATGATGACGACGACGAAG-------------------------------------------------------------------AGG------------------ATGAGGATAATGAT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TGATGATCAGCAGC--------------------------------CAT------------------------------------------------------T----G--------AA--TCATGAAACCACA-----------------------------------GCCATAT-------------------TATCGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---A------------------------------------------------------------------------------------ATGATGATGACGACGACGAAG-------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................GG---AAAAAGAGCTGGAGCCAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGATAATGAT--------------------------------------------GATGA......................................................................................................................................................................................................................................................................................................................1911.00100010
......ATTGAATGGAAAG------AC--TGGCGG--------------------C------A---------------------------------------------------------------------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TG.........................................................................................................................................................................................................2720.50100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---T..........................................................................................................................................................................................................2630.33100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TG.........................................................................................................................................................................................................2150.20100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGACGACGACGAAG-------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................2050.20100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GAT................................................................................................................................................................................................................2070.14100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------ATGATGATGACGACGACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACGACGACGAAG-------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................18100.10101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATG...............................................................................................................................................................................................................18110.09100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TGA........................................................................................................................................................................................................20110.09101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---T..........................................................................................................................................................................................................18140.07100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGA------------C------------------------------GA---------T-----------------------------------------GATGA---TGAT.......................................................................................................................................................................................................18150.07100010
dp5
AT-CACAGCATCAGCATCA------CA-GTA-CAA--------------------G-------------------------CA-----------CA------------------------GTCACGCA----------------------------------------------------------------------------------------------------------------GAACACTCTAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------AGTATCCATAAAATTAATAACAACCAAATAGTCGCCGGACC---AGCGGCCCTGGGGA---AGCCCGCACCGG--------------------GGGCTGATCCCGGGCCTGTTGCTACCGGCGGCGCCA--------------------------------CC-GACAAC-------------------------------------------------------------------------GATGACGACGCTGACGACGCTGAC---GACG---CTGACGA------------------------------------------------------CGACGACGAGTAC---------GATGA-----------------------------------GGACGATGAGG-------------------------------------------------------------------------------------------------------------AAGATGA---------------------------------------------------------TG-ATGA----------------------------------TAT------TGATGAT--GGAGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTGCAGG-----------------------------------------------------------TATAGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGA---AGCCCGCACCGG--------------------GGGCTGATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA---------------------------------------------------------TG-ATGA----------------------------------TAT------TGATGAT--GGA...............................................................................................................................................................................................2311.0010000100000
droPer2
AC-CAAACCAAAAGTGTAA------CGCATGAAAATGAAACGGAAACGGAAATGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGC------------------------------------------------------------------AA---C----------------------------TG---------------------------------------------------------AGGCAAACGATGGGCTGGCGACCACAGTGCGTACAAAGCAAGAGCTCGAAG---------------------------------------ACG----------------------------------------AGAATGAG---------------------AAC------GAT---AACG---------------------------------------------------------------------------------ATAACGATAATGATAACCAAA-------------------------------------------------------------------ACG------------------AAAACGAAAACGAG-----------------------------------------GATGAAGA---------------T------------------------------GAAGATGA---G-GATGAGGCGATATTGCAGCCGCCCGCCACACTCGAAGA-----GCAGCTGG---TCAACAGCTACTGGCGACGCG---------------------------------------------------------------------GCTTCGAGAG----------------------------------------------------------------------CCC-----CAAT-CCGC--CGCCGACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AC-CACAACAACCAGTCCC------ACGGCGCCCA--------------------C------------C-------ACCTCCA-----------CTGGCACCTCGAC--------------------GACCACGCCCTC-----------------CGCCAC------------CACCACTG------------------------------------------------------------------------------------GCACCA--------------------------------------------CCAGG---CGTTCGTTCCAGGAGGGCGATCTCCACC---------------------ACGAGGACGACG---AGGAGGATCTGGAGCTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCTCCT------TCGCCG----------------------------------------AGGAGGAG---------------------GAC------GAG---GACG---------------------------------------------------------------------------------ACGACGATGAGGAG------GGCCTG----------------------------------------------------------------------TTG---------------GA--------------------------------------CGAAGACGATCAGGAGGAGGACGACAACGATGGC------------------------------TTCTACAT---G-G-------------------------------------T---------------C--TCGCC--------------------------------CGC------------------------------------------------------C----G--------GAAACGGAGGCA----------------------------------------GCAACGG-------------------CAACAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................CGAGGACGACG---AGGAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.081010000
droBip1
GC-AGCAACAGCCACATCA------GCAGTATCAG--------------------A------GGTTGCAGC----------CT----CAGGCAACTGTCACCACTGC-------------------------------------------------------------------------------------------------------AA----------------------------------------------CAGCAACAGCAGCAGCAAC--A-----------------------GGAACGCGCAACAGCAAT---TTTTATGCGTTAAACGGCGATACACAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------GA------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGACAAC---------------------------------------------AG-------------CAA----------------------------------CACTGGTACTGGGTACCAGCAAC---CCTTGAACTT-GTCGCAGGCATTGCTGT-----------------------------------------CGCCATCGCCGCCCTTGAAC----------------------------------------------------------------------GATCAAATCAGT-TTGCT-TTTTCCCASizeHit CountTotal NormTotal
No Reads
droKik1
GCCAGCAACAACTACTTGA------GGAGTCGCAG--------------------C------T--GTTC---------------------------------------------GATTCCATTGAAATATTAAATGAACGAAAATTTAATAAGCCA------AACGGCGGCCAGGAGCAGGA--------------------------------GCAGCACGG-------------------------------------------------------------------------GGCCAGAC---------------AG---GTGGATGAGGCCATTGGCGATATTGAGG----------------------------------------------------------------------------------------------------------------------------------ACAA-----------------------------------------------------------------------------------------------------TTT---------------GGATAATGATGAAGTATTGCCAACAGACAACGATAGC------GACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------GACGACGA--------------------------------------------------CGACGA------C--------------GATGTTGATGGAGAAGG------CGATGAGGAG------------------GGGAGCGAGAGCCTGGACATTAAGTTACCCCATGACAA---T-G-------------------------------------A---------------T--------------G---------------------------------------------------------------------------------------------------------------------------------GATTGCCC------------AACAAGAAAAACCCAAG-TGTCG-CATTAACASizeHit CountTotal NormTotal
No Reads
droFic1
AC-CACAACAACAACAACA------AAAACAACAA--------------------G-------------------------CA-----------CA------------------------GTCAACCA----------------------------------------------------------------------------------------------------------------GAACACTCTAACCAACAACAATAACAACAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---AACATCATTAACAATAAGCTGGTGGCCAGTGGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTT----GTTGCAGGCAA-TGTTGCTCCGGGGAATGTTGCCCCTGGCGCCGGCA--------------------------------AT-GACATA----------------------------------------------------------------------------GACAACGCTGACGATG---ACGATTATG---ATGAGGA------------------------------------------------------CGACGACGAGGAC---------GA----------------------------------------------------------------------------------T------------------------GA------T--------------------------------------------GATGA---------------T------------------------------------GATGGTG-ATGA----------------------------------TAT------TGATGAT--GGAGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTACAGG-----------------------------------------------------------TATCGCCGSizeHit CountTotal NormTotal
No Reads
droEle1
GC-AGCAGCAGCAGCAGAA------TCAGCAACG-CTACGAATACTACC-------------------AAAA-----------------------------------------------------------------------------------------------------CGAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGAGGAGGAGCAGGTGGAGGTTGAGGAGG------AGCGGGAGGAGGA---TCAAACGCA-----------C-----------TA---C---GACATCA-------------------------------------------------------------------------------------------------------------------------------------------------CC-AAC------------------ATCGATACCTAC-----C-AGAGCGGTCTGGG-------------------------------CCGGGGCGATG------AG---GACGACAGCG---------------------------------------------------------------------------------ATCGGCAG------TGCCTG--------------------------GTGGACGACGACGACGACGATG--------------AGGAGCCCTACGACGA-----------------------------------------------------AGAGGAGAACGATGC---------------C------------------------------GGCGACGA---G-G-------------------------------------A---------------C-----------------------------------TACTCGA------------------------------------------------------C----C--------AACTCGT---------------------------------------------TGGGCTC-------------------CGGCTCGGSizeHit CountTotal NormTotal
No Reads
droRho1
AC-AACAACACCAGCAGTGGGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCATCAACGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------CAATGGCGGCACA---ACCAACTCCGGCGGCACC-GCGGA---TTCCGTGGTTGCGG---TGGATGACGATG---------------ACGACG---ACGATGGCG---GTG------------------ATCACCAGCGACAGGTGGACGATCGCCTGGAGCAGGATGCCG-----------------------------------------A---------------------CGAGGAGG--------------------------------AGGA------------------CCCGGA-----------------------------------------------------------------------------------------------------------TGA---C-GACGATGT----------------------------------------------------GGTGGTGGTGGGCA------------GTGCCAC----------------------------------------------------------CGCAAT--------GGCCAGG-GG------------------------AATTG---------------------------------------CCCAGCGASizeHit CountTotal NormTotal
No Reads
droBia1
GT-TGCTCATCCAGCAGCAACACCACC---TTCTG--------------------A------ACGGTCGCCGCATT-----ATAATCCAGGCAACGGGCAACTCGTCCGTGTTGGCCGCCAGCGA------------------------------------T------------ATCAAGGA------------------GG------------------------------------AGGA------------------------------------------------------------------------------------------------------------------------------------------TGAGG---AGGAGGA---GGATCCCGAG---C------TGAACGATGAGAATCTGCA---GGATATCGAAG--AGGAGGCTCAGGCAG---C----------------------------CGAGGCGGACGAGGAGCCCGAG--AGTACCACGCAGCATTTGTC----CACGCAGGTCA-A-----------------------------------GCTGGAGCTGGAAG-------------------------------------------------------------------------------------AGGAT------------------------------------G------ATGAGAT---------------------------------------------------------------GCCC------------------------G-----ACGAGGAGGAGGAAGAGGAGGAG-----------------------------------------------GACGACGA-----------------------------------------------------------------------------------------------------------------------------T-GAGGAGCA-------------------------GCAGCACGG------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGAGTA---CCAAATCAGTGCTGGCG-------------------CGGGCGGASizeHit CountTotal NormTotal
No Reads
droTak1
AT-CGCAGCATGCA--A---------CGACATCAG--------------------T------------C-------ACAAGCA-----------CA------------------------GTCAA-------------------------------------------------------------------------------------------------------------CAACAAGAACACTCTAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------AA---C---CACATCATTAACAATAAGCTGGTGGCCAGTGG---AACGACCTTGGGGC---AGCCGGCGACACATGTTGCCG-----------GTGTTGCTCCCGGGAATGTTGCTGCTGGCAC----------------------------------------------------------------------------------------------------------CGACAACAACGACATTGACAACGCCGACGATG---ACGAT---T---ATGAGGA------------------------------------------------------CGACGACGAGGAC---------GA------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATGA---------------T------------------------------GA-------------TGA----------------------------------TAT------TGATGAT--GGGGT--------------------------------CGA------------------------------------------------------T----G--------AAATTGGTGAAATTGCAGG-----------------------------------------------------------TATCGCCGSizeHit CountTotal NormTotal
No Reads
droEug1
AC-GAGGATGACGAAGACA------ATAATGACGACGAGGAGGATGATG-------------------AAGA-----------------------------------------------------------------------------------------------------------------------------------------CAA-------------------------------------------TAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------GACGACGACGACGAGGATGACAAAG---ACAAT---A---ATGGAG------------------------------------ACGACGAGGAGGAGGATGACGAAGAAGAAAAT---------AATGG-----------------------------------GGACGACGAGGATGA--------------------------------------------------TGAAGA------C--------------GATAATAACGGAGACGA------TGAGGATAA------------------CGAAGATGATACCGGGGACGATGAG------GA-------------CGA----------------------------------CGA--------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------AA------------------------GATAATAASizeHit CountTotal NormTotal
No Reads
dm3
GC-ACCAGTTGCTGCGCAA------CCTGCCCAAG-----------------------------ATCAAGATCGAG-----AT-----------------------------CGGTTCCCAGCGC-------------------------------------------------------------------------------------------------------GATCCGGAGGAAGAGGAGTCGG------------------------------------------------------------------------------------------------------------------------------------------AGCAAGAGCTAGAGCAGGAGCCGG------AGCAAGAGCAGGA---TGT---------GCA-GTCCCGACCCTCAGCC-G---C---ATCCACGTCCATTTTG--------------------------------------------------------------------------------AAGACTTCACTGCTGAGCG----------------------------------------------------------------------------------------------------------GAGCGGCGGCGACGTTGGCCACCTTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------CGG---------------------------------------------------------------------------------------------------------------CAGCCGAGCAAATAGCCCG---------CTCCTCGGCCAGCT-------------------GCGACAC-------------------TGCCAGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTTTG--------------------------------------------------------------------------------AAGACTTCACTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGCAGGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GAGGAAGAGGAGTCGG------------------------------------------------------------------------------------------------------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGGA---TGT---------GCA-GTCCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCCGG------AGCAAGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................G------------------------------------------------------------------------------------------------------------------------------------------AGCAAGAGCTAGAGCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCCGG------AGCAAGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--------------------------------------------------------------------------------AAGACTTCACTGCTGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT---------GCA-GTCCCGACCCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGGCGACGTTGGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCG---------CTCCTCGGCCAGC......................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTTGGCCACCTTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATCCGGAGGAAGAGGAGTCGG------------------------------------------------------------------------------------------------------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----------------------------------------------------CGG---------------------------------------------------------------------------------------------------------------CAGCCGAGCA.....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AT-----------------------------CGGTTCCCAGCGC-------------------------------------------------------------------------------------------------------GAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CGCAA------CCTGCCCAAG-----------------------------ATCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCAGGA---TGT---------GCA-GTCCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GGAGGAAGAGGAGTCGG------------------------------------------------------------------------------------------------------------------------------------------AGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCTAGAGCAGGAGCCGG------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCTAGAGCAGGAGCCGG------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCAGGA---TGT---------GCA-GTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------GCA-GTCCCGACCCTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......GTTGCTGCGCAA------CCTGCCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTG--------------------------------------------------------------------------------AAGACTTCACTGCTGAGCG----------------------------------------------------------------------------------------------------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGAGCAGGAGCCGG------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------AAGACTTCACTGCTGAGCG----------------------------------------------------------------------------------------------------------GAGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGGA---TGT---------GCA-GTCCCGACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AC-AACAACAACAACGAGC------ACAGCAGCAG--------------------CAGCAGCG-----ACAGCGAC-----AA-----------CA------------------------ACTAGCCA----------------------------------TGCCACGCCCACGGACAAGA------------------------------------------------------------------------------GCAACAGCAACAACA--------------------------------------------TG---GCACAT----------------------CCCATACATCCCTCGCAG------------------------------------------------------------------------------------C-----------AG---C---AACACCACCAACAACAGA-TACTGCACGAAGG---CGCCACGTTGCAGCAGCAACATGCAACGCACGTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTCCGCCGACAATACGCGCTTTATACCGCCA------------------ATGCTGCTGGTGAAGTCGCACTACGTGC-----------------CGCC---------GG--------------------------------------------------------------------------------------------------------------------CCAAAC-ATGCCAGCGAGC-------------ATGCGAC----------------------------------------------------------CACAAC--------AACACGA---------------------------------------------GCGACAA-------------------CAACGTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGCAGCAGCAACAGCAGCA------CC---ATCGC--------------------A------AGGCTCAGCCCTTC-----AA-------------------------------------------CTTCTATGCCCGC-----------------GACTAT------------TACTACCA------------------GC--------AA----------------------------------------------CATCAGCAGCAGCAACAGC--AGCAGT----------------------CACCCATCAGCAGCATGA---G------CAACGGCAACATGCGGC------------------------------------------------------------------------------------------A----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------AGCAACATCGACGCCAGCAGCAGC---TTCCGCCTGCGCAG---ACGAT---------------------------C--ATC---ATCG---ATGAGAGCGACAATGAGCTGGAGGAGGAGCAGCAGATGAGGCTGAGCTTTGAGCGGTACATGG-----------------------------------------A---------------------GCAGCTGA--------------------------------AGCA------------------GCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGC-CCTACG---------------------ATCCCCA----------------------A---GAAACTTTGTGCAATAG-------------------CAACACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................AACATGCGGC------------------------------------------------------------------------------------------A----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
.........................................................................................................................................................................................................C--------AA----------------------------------------------CATCAGCAGCAGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910001
...................................................................................................................................................................................................................................................................ATCAGCAGCAGCAACAGC--AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.0810010
........................................................................................................................................................................................................GC--------AA----------------------------------------------CATCAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610010
.....................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGC--AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
.....................................................................................................................................................................................A------------------GC--------AA----------------------------------------------CATCAGCAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001
..................................................................................................................................................................................................................................................................CATCAGCAGCAGCAACAGC--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
...............................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------A----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...................................................................................................................................................................................................................A----------------------------------------------CATCAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
...............................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------A----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AGC------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
droYak3
AG-C-CAACAAGTACAACG------C--GTCGA----------ACGAT----------------------------------T-----------CT------------------------GTCACGTCGGCGATTCAA----------------------------------------------------------------------------------------------------------------TGCGACTTCCATCACAACAACAACCACGCCGGGATCAACGAACGGCGACGAGAT---------------------------------------------------------------------------------------------------------------------AAGCACACGA---CGT---------CCG-TATGCGGCCTTGAACC-G---C---TCACGTAATCGCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCGCGAACCACAAC---CACCGACGGTGCGCAGGAGGAC---------------------GAT------------G------ATG------------------------------------------------------------------ACGATGACGATGATGATGATGATG-----------------------------ATGAT-----------------------------------------------GATGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAAGCAGCAGGCACCGCCACCAGCTGTCTTC--C------------TGC--AAACAAACCGCCATCGCG-CCCTAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------ATGAT-----------------------------------------------GATGAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAA.............................................................................19110.09100000010000
droEre2
CC-AACAACAACAACAGCA------ACAACAATAGCAACAACTATGGCC-------------------ACAGC-----------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCTCGCAGAGCAGCATG------------------------------------------------------------------------------------------G---A------CGAA------------------------------------GA---GGAGGACGACGAGGAGGAGGACGAAGAGGAGG------AGGAGGAGCAGGA---TGTGTCGCA----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AAC------------------AGCAGCAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCGGCGGAA--------C---------AGCAGCAGCGGGCTGCAGCAGCGGCAGCTGTAGTTGCAGCCGCAGTTAGTGC-GCTGCAC-----------------------------------------------------------------AACGGCAA-----CAAG-CAGCAGCACT-ACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAGGAGGACGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100
...................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAGGAGGACGAAGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AAC------------------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------GC-----------AA---C---AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------GC-AAC------------------AGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510100000

Generated: 05/17/2015 at 10:58 PM