ID:

dmo_720

 Coordinate:

scaffold_6473:9360260-9360337 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6 -5.2 -5.0

Flybase annnotation

exon [dmoj_GLEANR_15670:3]; exon [dmoj_GLEANR_15670:4]; CDS [Dmoj\GI14886-cds]; CDS [Dmoj\GI14886-cds]; intron [Dmoj\GI14886-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
  1. scaffold_6308:2477445-2477466 -
  2. scaffold_6473:25228-25249 -
  3. scaffold_6473:2984541-2984562 -
  4. scaffold_6473:6023908-6023929 -
  5. dmo_720  scaffold_6473:9360291-9360312 -
  6. scaffold_6496:11673038-11673059 -
  7. scaffold_6496:21771221-21771242 -
  8. scaffold_6500:3052244-3052265 -
  9. scaffold_6500:10627743-10627764 -
  10. scaffold_6500:14384336-14384357 -
  11. scaffold_6500:22052731-22052752 -
  12. scaffold_6540:18095774-18095795 -
  13. scaffold_6654:1914800-1914821 -
  14. scaffold_6680:2860375-2860396 -
  15. scaffold_6680:6504842-6504863 -
  16. scaffold_6680:12855383-12855404 -
  17. scaffold_6680:18509888-18509909 -
  18. scaffold_6680:20619875-20619896 -
  19. scaffold_6680:21958705-21958726 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
CCCACTAGCCATAGCCATAGCCATAGTCACAGTCATAGCCATAGCCATGGGCACAATCCCACAATGATGAACCACAGCAACAGCAGCAGCAGCAACAGCAACAGCAACAACAACAGCAACTGCAACAGCAACAACAACAATAACGGCAACAGCAGCACACTGCCGCACAACCTGCGCA
**************************************************................................((((..((.......((....))..........))..)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V049
head
..................................................................................................................AGCAACTGCAACAGCAACAACA.......................................... 22 0 14 0.07 1 1 0
...........................................................................AGCAACAGCAGCAGCAGCAACA................................................................................. 22 0 20 0.05 1 1 0
........................................................................CACAGCAACAGCAGCAGCAGCA.................................................................................... 22 0 20 0.05 1 0 1
.........................................................................ACAGCAACAGCAGCAGCAGCAACAGC............................................................................... 26 0 20 0.05 1 1 0

Anti-sense strand reads

GGGTGATCGGTATCGGTATCGGTATCAGTGTCAGTATCGGTATCGGTACCCGTGTTAGGGTGTTACTACTTGGTGTCGTTGTCGTCGTCGTCGTTGTCGTTGTCGTTGTTGTTGTCGTTGACGTTGTCGTTGTTGTTGTTATTGCCGTTGTCGTCGTGTGACGGCGTGTTGGACGCGT
**************************************************................................((((..((.......((....))..........))..)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
 M046
female body
 V056
head
 M060
embryo
...............................................................................................................................................GCGGTTGTAGTGGTGTGACGGC............. 22 3 3 0.33 1 1 0 0 0
.................................................................................................................................................CGTTGTATTGGTGTGACGGC............. 20 3 7 0.29 2 1 0 1 0
................................................................................................................................................CCGTTCTATTCGTGTGACGGC............. 21 3 6 0.17 1 1 0 0 0
................................................................................................................................GTTGTTGTTGTTATTGCCGTT............................. 21 0 7 0.14 1 0 1 0 0
....................................................................CTTGGTGTCGTTGTGGTGGTCT........................................................................................ 22 3 13 0.08 1 0 1 0 0
..................................................................................................................................................GTTGTAGTGGTGAGACGGC............. 19 3 18 0.06 1 0 0 1 0
..................................................................................CGTCGTCGTCGTTGTCGTTGTC.......................................................................... 22 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:9360210-9360387 - dmo_720 CCC----ACTAGCC---A------TAGCCATAGCCATA---------------------GTCACA-------------------------------------------------GT-------------CATAGCCATAGCCATGGGCACA---A--------------TCC----CACAATG------A------TGAACCACAG---CAACAGCA---------------GCA---------------------------------GCAGCA---ACAGCAACAGCAACAACAACAGC---------------AACTGCAA---------CAGC---------AACAA---CAACA------ATAACGGC---------------AAC---AGC---------AGCACACTGCCGCACA-ACCTGCGCA
droVir3 scaffold_13047:6703752-6703934 - CCAA--CAAC---A---A------CAACCACA------A---------------CAATTACCACACC---ATCATCA-----------------TCATCACCACCATCATCACAGTCAC---------------------------------------------------------CA------------CC---AACATCAACACCAACAGCAACATCAGCAAC------------------AC---------CA------------ACAGCA---------G------CAACAACA---ACA------------CCAACAACAG------CAAC------AACAACAA---CA---------AC---AGCAGCAAC---------AA---CAGCAACACTATCAA------------CA-ACATGCACT
droGri2 scaffold_14830:2581354-2581536 - AAC----AATTGCC---A------CAC-CATCA--------------------------------------------CCATCATCATCATCACC-----------ACCATCACAGTCACC---------AAC----------A-----------------------------------------------------ACATCAGCAACAACACCAACAACAGCAAC------------------AC---------CA------------ACAGCA---------G------CAGCAACA---ACA------------ACAACAACAACACCTACAACAACAGCAGCAACAA---CAGCAACACCAAC---AACAA------------------CAGCAACACTATCAA------------CA-ACATGCAC-
droWil2 scf2_1100000004888:1009876-1010049 - ACAA--CAGCAGCA---G------CAACAA------------------------CAACAACAGCAGCAGCAACA--------------------ACA------------------ACAGC---------A------------------GCA---A------CAACAG---------C------------AGC---AGCAGCAACAG---C---------------AACAACAGCAGCAGCAA---------------CAACA------ACAGCA---------G------CAACAACAACA---------------GCAGCAGCAGCA---ACAGC---------AACAA---CA---------GC---AGCAGCAACAACAAC---AGCAGCAACAACA-------------------------ACAGCA
dp5 XR_group6:2766887-2767064 + TCC----AGCATCC---C------CATCAGTATCCACT---------------------ACTGCA-------------------------------------------------GC-AACAGCAACAGCAGCAGCAACAGCAG------CA---------G---CAGCA---------------------------GCAGCAACAG---AAGCAGCA------------GCA------------------------------------GCAACT---GCAGCAACAGCAGCAGCAACA---GCA------------ACAGCAGCAGCA---GCAAC---------AGCAG---CA---------AC---AGCAGCAGCAGCAAC---AGCAGCAGCAACT-------------------------GCAGCA
droPer2 scaffold_24:1317804-1317979 - CACT--G-GCCATT---G------TATCCT------TAGCAAAGTCAACGACAGCG---------------------------GTCACAGCTTC-----------G---------------------------TGATCACAGT------CA---------A---AGTCA-------T------------AATAATA-----ACCAT---CACCAGCA---------------GCAGC------AG---------CA------------GCAGCA------ACAG------C---ACCAACA---------------GCAGCAGGCGCA---ACAGC---------AGCAG---CA---------GC---AGCAACAACATCTGC---AACACCTCCAGCA-------------------------ACAGCA
droAna3 scaffold_13117:5219681-5219851 - CCAG--CAGCAGCA---G------CAGCCA------CAGCA------------------ACAGCAAC---A--------------------------------------------------------------GCAGCAGCC------------ACACCATCAACAGCAGCAGACAT------------------------CCCA------GCAACA------------GCAGCA---------G------CATCAAGCACA------ACAACA---------A------CATCAGCAGCA---------------GCAGCAATCACA---ACAAC---------ATAAG---CA---------GC---AACAGCAGCAGCACC---AGCAGCAGCAACA-------------------------TCTTCA
droBip1 scf7180000396737:1834806-1834987 + CCCA--C-GCAACC---ACTGCCACAGCCCACGCAACA---------------------------------GCA--------------------GC---------A---------------------------GCAGCAGGT------GCAGCAA------TTGCAGCA---------------------GC---AAGTGCAACAG---T---------------TGCAACAGCA---------G---CAGCAACA------------GTTGCT------GCAG------CAACAACA------------------GCAGCAGCAGCA---ACAAC---------AACAGCAGCA---------GC------ATCAGCCAC------AGCAGCAACAACA---------ACGAC---CACC-GCCTACGCA
droKik1 scf7180000302274:154785-154959 - CCC----AACAGCA---G------CATGCA------CAGCA------------------A---------CAGCA-----------------------------------TCATGGCCATT---------CAT----------TG--------CAT------CC---GCACCACACAC------------ATC---AG------------CAGCAACAAC------AA---------------CAG---------CA------------GCAGCAGCAGCAACAA------CACCACCAGCA---------------GCAGCATCAG------CAGC------AACATGCA---CA---------GC---A---------ACAGCAGCAG---CAGC---------AACACCATGCCGCCCA-GCTGGCCCA
droFic1 scf7180000454045:942242-942418 - CAAC--A-AC---A---A------TAGTTGTGGCAACA---------------------------------GCAACAG---------C-----------------------------------------AATTGCAATAGCA------------A------TAGCAACA---------------------------GCAACAGCAA---CAGCAACA------------GCAA---------CAG---------CA------ACAGCAACAGCA---A------------CAGCAACA---GCA------------ACAGCAACAGCA---ACAGC---------AACAG---CA---------AC---AGCAACAGCAACAGC---AATAGC------------AGCAACATGCAACACACACAGCAGCA
droEle1 scf7180000491193:3036449-3036618 - CACAACTTGCAGCA---A---------------------------------------------------CAGCATCAGAGTCACACACAACTGC-----------A---------------------------GCAACATAAT------CA---------G---CAACA---------------------------GCAGCAGCAACAGCAACAACAGCAGCAAC------------------AG---------CA------------GCAACA---------G------CAGCAACA---ACA------------GCAGCAACAGCA---GCAAC---------AGCAA---CA---------GC---AGCAGCAGCAACAGC---AACAGCAGCAACA-------------------------GTTGCA
droRho1 scf7180000779334:988847-989003 - CAGC--A-GC---A---A------CAGCAGCA---------------------------------------------------------GCAGC-----------A---------------------------GCAACAGCAG------CA---------G---CAACAGCAG---CA-------------C---AACAGCAGCAG---C---------------CACAGCAGCAGCAGCAACTG---------CA------------ACTGCA---------G------CAGCAACA---GCA------------ACTGCAACAGCA---ACAGC---------AACTG---CA---------GC---AGCAACAGC---AAC---TGCAGCAGCAACA-------------------------GCAACA
droBia1 scf7180000299102:2016172-2016351 - GCCA--AATCATCA---C------CATCAT------------------------CATCATCACCACCACCACCA-----------------------------------TCACAGTCAGC---------T------------------ACA---AC---TC---CAA---------C------------AAC---AA------------CAGCAACAAC------AACAACAACA---------GCAGCAA------CACCA------ACAGCC---------G------CTACACCAACA---------------ACAGCAATTGCA---ACACC---------AGCAG---CA---------GC---AACAACAACAACACC---AACAACACTATC------AG------------CA-ACATGC---
droTak1 scf7180000415941:514897-515066 + GCA----ATTGGCA---A------TA--CACCG---------------------CCGCCATTGCAACTGG-----------------------------------------------------------CACCGCAACAGCAGCAAATGCA---AC---CG---C---------------------------------AACAGCAG---TACCAACA---------------GCAGCCGCAACAGCAGCAGTACCA------------ACAGCA---------G------C---A---------------------ACAGCAGCAGCA---ACAGC---------AGCCA---CA---------AC---AGCAGCAGCAACAAC---AGCCGCAGCAACA-------------------------AGATCA
droEug1 scf7180000409524:815198-815373 + CACT--C-TCAGCA---T------CACGCC------CAGCA------------------A---------CAACA-----------------------------------TCATGGCCATA---------CGC----------TG--------CAC---------CAGCATCATACAC------------AC------------------CAGCAACA------------ACAA---------CAG---------CA------GCAGCAACAACA---GCAGCAA------CA---------------------------GCAACACCACCAGCAACAGCAGCAGCAACAA---CA---------GC---A---------ACATGCACAGC---AGC---------AACATCATGCCGCCCA-GCTGGCCCA
dm3 chr3L:7824017-7824191 - CCC----AGCATCA---G------CATCAG---------CA------------------G---------C-----------------------------------AACATCACGGCCACC---------CGT----------TG--------CAT------CC---GCATCATACAC------------ACC---AG------------CAGCAACAAC------AA---------------CAA---------CA------ACAGCAGCAGCA---GCCGCCG------CC---------GCAACACCACCAGCAGCAGCAA---CA---GCAGC---------ACGCA---CA---------GC---AGCAGC------------AGC---AGC---------AGCATCATGCCGCCCA-GCTGGCACA
droSim2 3l:9233775-9233947 + CGCA--CAAG---G---C------CAGCCACGC---------------------CCACAATGCCAGCAGGA--------------------------------------------------------------GCAGTAGCT------------GGAACGCCTACGACA---------------------C----CACAGCAACAG---C---------------AGCACCTGCAGCAGCAA---------------CATCA------ACAGCA---------G------CAACAACAGCA---------------GCAGCAACAGCA---ACAGC---------ATATG---TT---------GC---AGCATCCGCACACGC---ACCCGCATCC-------------------------GCATGCCCA
droSec2 scaffold_0:71538-71703 - ATC----TGCAGCA---G---------------------------------------------------CAACATCAGAGCCACTCACAGTTGC-----------A---------------------------GCAACATAAC------CA---------G---CAGCA---------------------------ACATCAGCAGCAGCAGCAACAACAGCAGC------------------AA---------CA------------ACAGCA---------G------CAACAACA---GCA------------GCAGCAACAGCA---GCAGC---------AACAG---CA---------GC---AACAACAGCACCAAC---AGCAGCAGCAACA-------------------------GTTGCA
droYak3 3L:7371236-7371412 + CCC----ACTAGCAATCA------G--------------------------------------------AAATCCAGGAGTCGAACTCAGCTGC-----------AGC--TGCGTCCACT---------C----------------------------------CTGCATCC----CTCAATAGTCTAAGCC---AG------------CAGCAACAGC------AG---------------CAG---------CA------------GCAGCAGCAGCAACAG------C---AACAGC---------------AGCAGCA---------GCAGC---------AACAC---CA---------GC---AACAGCAGCAACATC---AGCAGCAGCA----------------------CA-CACCGAATA
droEre2 scaffold_4784:3586514-3586679 + ATC----TGCAGCA---G------CAA---------------------------------------------AATCAGAGCCACTCGCAGTTGC-----------A---------------------------GCAACACAAC------CA---------G---CAGCA---------------------------GCATCAGCAGCAGCAGCAGCAGCATCAAC------------------AG---------CA------------GCAGCA---------G------CAGCAACA---GCA------------GCAACAGCAGCA---ACAGC---------AGCAG---CA---------GC---AACAACAGCAACAGC---AGCAGCAGCAACA-------------------------GCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCC----ACTAGCC---A------TAGCCATAGCCATA---------------------GTCACA-------------------------------------------------GT-------------CATAGCCATAGCCATGGGCACA---A--------------TCC----CACAATG------A------TGAACCACAG---CAACAGCA---------------GCA---------------------------------GCAGCA---ACAGCAACAGCAACAACAACAGC---------------AACTGCAA---------CAGC---------AACAA---CAACA------ATAACGGC---------------AAC---AGC---------AGCACACTGCCGCACA-ACCTGCGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................AGC---------------AACTGCAA---------CAGC---------AACAA---CA............................................................................22140.071000010
............................................................................................................................................................................................................AG---CAACAGCA---------------GCA---------------------------------GCAGCA---ACA.......................................................................................................................................................22200.051000010
.........................................................................................................................................................................................................CACAG---CAACAGCA---------------GCA---------------------------------GCAGCA---..........................................................................................................................................................22200.051001000
..........................................................................................................................................................................................................ACAG---CAACAGCA---------------GCA---------------------------------GCAGCA---ACAGC.....................................................................................................................................................26200.051000010
droVir3
CCAA--CAAC---A---A------CAACCACA------A---------------CAATTACCACACC---ATCATCA-----------------TCATCACCACCATCATCACAGTCAC---------------------------------------------------------CA------------CC---AACATCAACACCAACAGCAACATCAGCAAC------------------AC---------CA------------ACAGCA---------G------CAACAACA---ACA------------CCAACAACAG------CAAC------AACAACAA---CA---------AC---AGCAGCAAC---------AA---CAGCAACACTATCAA------------CA-ACATGCACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................CAACA---ACA------------CCAACAACAG------CAAC------AACA.....................................................................................2650.201000000000000000000000010000000000000000000000000000000000000000
........................................................................CATCA-----------------TCATCACCACCATC...................................................................................................................................................................................................................................................................................................................................1970.141001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................A---------G------CAACAACA---ACA------------CCAACAAC...........................................................................................................21100.101000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AGCAAC------------------AC---------CA------------ACAGCA---------G------CA...........................................................................................................................................19100.101000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................G------CAACAACA---ACA------------CCAACAACA..........................................................................................................21130.081001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AACAA---CA---------AC---AGCAGCAAC---------AA---CAGCAACA...............................28190.051001000000000000000000000000000000000000000000000000000000000000
.CAA--CAAC---A---A------CAACCACA------A---------------C........................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CAAC------AACAACAA---CA---------AC---AGCAGCAAC---------A...........................................26200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................A---ACA------------CCAACAACAG------CAAC------A........................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CAACAA---CA---------AC---AGCAGCAAC---------............................................19200.051000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AAC------AACAACAA---CA---------AC---AGCAGCAA......................................................23200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................CA------------ACAGCA---------G------CAACAACA---ACA------------...................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AACAA---CA---------AC---AGCAGCAAC---------AA---CAGCA..................................25200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................G------CAAC------AACAACAA---CA---------AC---AGCA..........................................................21200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CAAC------AACAACAA---CA---------AC---AGCAG.........................................................21200.051000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AC------AACAACAA---CA---------AC---AGCAGCAAC---------AA---CA.....................................27200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
AAC----AATTGCC---A------CAC-CATCA--------------------------------------------CCATCATCATCATCACC-----------ACCATCACAGTCACC---------AAC----------A-----------------------------------------------------ACATCAGCAACAACACCAACAACAGCAAC------------------AC---------CA------------ACAGCA---------G------CAGCAACA---ACA------------ACAACAACAACACCTACAACAACAGCAGCAACAA---CAGCAACACCAAC---AACAA------------------CAGCAACACTATCAA------------CA-ACATGCAC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................CATCATCATCATCACC-----------ACCATCA...............................................................................................................................................................................................................................................................................................................................2370.14110
......................................................................................................................................................................................................................................................................................................................................................................ACACCAAC---AACAA------------------CAGCAACA...............................21200.05101
droWil2
ACAA--CAGCAGCA---G------CAACAA------------------------CAACAACAGCAGCAGCAACA--------------------ACA------------------ACAGC---------A------------------GCA---A------CAACAG---------C------------AGC---AGCAGCAACAG---C---------------AACAACAGCAGCAGCAA---------------CAACA------ACAGCA---------G------CAACAACAACA---------------GCAGCAGCAGCA---ACAGC---------AACAA---CA---------GC---AGCAGCAACAACAAC---AGCAGCAACAACA-------------------------ACAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................AACAACAGCAGCAGCAACA--------------------.................................................................................................................................................................................................................................................................................................................................................19200.20400040
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACA-------------------------ACAGCA18200.15300030
...............................................................................................................................................................................................................................................................................GCA---------G------CAACAACAACA---------------GCA................................................................................................................18200.15300030
.......................................................................................................................C---------A------------------GCA---A------CAACAG---------C------------AGC---AGCAGC......................................................................................................................................................................................................................................22200.10200020
.....................................................................CAACA--------------------ACA------------------ACAGC---------A------------------GCA---A------CAACA.........................................................................................................................................................................................................................................................................23200.10200020
ACAA--CAGCAGCA---G------CAACAA------------------------C........................................................................................................................................................................................................................................................................................................................................................................................20200.10200002
.....................................................................................................................................................................................................CAGCAACAG---C---------------AACAACAGCAGCAGCAA---------------..............................................................................................................................................................................27200.05101000
............................................................................................................................................................................................................................................................................ACAGCA---------G------CAACAACAACA---------------GCA................................................................................................................21200.05100001
....................................................................................................................................................................................................GCAGCAACAG---C---------------AACAACAGCAGCAGC...............................................................................................................................................................................................26200.05101000
...................................................................................................................ACAGC---------A------------------GCA---A------CAACAG---------C------------AGC---A...........................................................................................................................................................................................................................................21200.05100010
..................................................................................................................................................................................................................................................................................................................................GCAGCA---ACAGC---------AACAA---CA---------GC---AGCAGC........................................................26200.05101000
................................................................................................................................................................................................................................................................................................................................CAGCAGCA---ACAGC---------AACAA---CA---------GC---AG............................................................24200.05100010
.......................................................................................................................................................................................................................................................................................................................................A---ACAGC---------AACAA---CA---------GC---AGCAGCAA......................................................23200.05101000
.........................................................................A--------------------ACA------------------ACAGC---------A------------------GCA---A------CAACAG---------C------------..................................................................................................................................................................................................................................................21200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................AC---AGCAGCAACAACA-------------------------ACAGCA21200.05100001
............................................................................................................................................................................................................................................................................................................................................................AA---CA---------GC---AGCAGCAACAACA.................................................19200.05100001
..........AGCA---G------CAACAA------------------------CAACAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................23200.05101000
......................................................CAACAACAGCAGCAGCAACA--------------------ACA------------------............................................................................................................................................................................................................................................................................................................................23200.05100010
....................................................................................................................................................................CAG---------C------------AGC---AGCAGCAACAG---C---------------A.............................................................................................................................................................................................................20200.05100010
...................................................................................................................................................................................................................................................................................................................................CAGCA---ACAGC---------AACAA---CA---------GC---AGCAGCAA......................................................27200.05101000
...............................................................................................................................................................................................C---AGCAGCAACAG---C---------------AACAACAGCAG...................................................................................................................................................................................................24200.05100010
.........................................................................................................................................................................................................AACAG---C---------------AACAACAGCAGCAGCAA---------------CA............................................................................................................................................................................25200.05100010
.............A---G------CAACAA------------------------CAACAACAGCAGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................................27200.05100010
............CA---G------CAACAA------------------------CAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.................................................................................................................................................................CAACAG---------C------------AGC---AGCAGCAACAG---C---------------AA............................................................................................................................................................................................................24200.05101000
....................................................................................................................................................................................................................................................................CA------ACAGCA---------G------CAACAACAACA---------------GCAGC..............................................................................................................25200.05100010
......................................................................................................................................................................................................................................CAGCAGCAGCAA---------------CAACA------ACAGCA---------G------CA...........................................................................................................................................26200.05100001
......................................................................................................................................................................................................................................................................................................................................CA---ACAGC---------AACAA---CA---------GC---AGCAGCAACAA...................................................27200.05100010
............................AA------------------------CAACAACAGCAGCAGCAA.......................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..............................................................................................ACA------------------ACAGC---------A------------------GCA---A------CAACAG---------C------------AGC---............................................................................................................................................................................................................................................23200.05100010
....................................................................................................................................................GCA---A------CAACAG---------C------------AGC---AGCAGC......................................................................................................................................................................................................................................20200.05100010
............................AA------------------------CAACAACAGCAGCAGCAACA--------------------ACA------------------ACA.........................................................................................................................................................................................................................................................................................................................28200.05100010
.................................................................................................................................................................................................................................................................................................................................................................CA---------GC---AGCAGCAACAACAAC---AGCAGCA.....................................26200.05100001
.........CAGCA---G------CAACAA------------------------CAACAACAG................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.................G------CAACAA------------------------CAACAACAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................................................................AGCA---------G------CAACAACAACA---------------GCAG...............................................................................................................20200.05100010
........................................................................................................................................................................................................CAACAG---C---------------AACAACAGCAGCAGCAA---------------CAA...........................................................................................................................................................................27200.05100010
.......................................................................................................................................................................................................................................................................................................................................A---ACAGC---------AACAA---CA---------GC---AGCAGCAACA....................................................25200.05100010
...........................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCAGCA---ACAGC---------A.....................................................................................20200.05100010
.........................................................................................................................................................................................................AACAG---C---------------AACAACAGCAGCAGCAA---------------..............................................................................................................................................................................23200.05101000
...........................................................................................................................................................................................................................................................................................G------CAACAACAACA---------------GCAGCAGCAGCA---....................................................................................................24200.05100010
...................................................................................................................ACAGC---------A------------------GCA---A------CAACAG---------C------------AGC---AGCA........................................................................................................................................................................................................................................24200.05100010
....................................................................................................................................................................................................................................AACAGCAGCAGCAA---------------CAACA------...................................................................................................................................................................19200.05100001
.......................................................AACAACAGCAGCAGCAACA--------------------ACA------------------............................................................................................................................................................................................................................................................................................................................22200.05100010
..........................................................................................................................................................A------CAACAG---------C------------AGC---AGCAGCAACAG---C---------------..............................................................................................................................................................................................................23200.05100010
dp5
TCC----AGCATCC---C------CATCAGTATCCACT---------------------ACTGCA-------------------------------------------------GC-AACAGCAACAGCAGCAGCAACAGCAG------CA---------G---CAGCA---------------------------GCAGCAACAG---AAGCAGCA------------GCA------------------------------------GCAACT---GCAGCAACAGCAGCAGCAACA---GCA------------ACAGCAGCAGCA---GCAAC---------AGCAG---CA---------AC---AGCAGCAGCAGCAAC---AGCAGCAGCAACT-------------------------GCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACA---GCA------------...................................................................................................................19200.2550000500000
.........................................................................................................................................................................................................................................................................................................A---GCA------------ACAGCAGCAGCA---GCA.................................................................................................19200.1530300000000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAAC......................................................................................................................................20200.1530030000000
.................................................................................................................................................................................................................................................................................................................................................................CA---------AC---AGCAGCAGCAGCAAC---A...........................................20200.1020000200000
........................................................................................................................................ACAGCAG------CA---------G---CAGCA---------------------------GCAGCA.....................................................................................................................................................................................................................................21200.1020000020000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACA---GCA------------AC.................................................................................................................26170.0610001000000
.......................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA---GCA------------ACAGC..............................................................................................................27180.0610100000000
..................................................................................................................................GCAGCAACAGCAG------CA---------G---CAGCA---------------------------GCAGCAAC...................................................................................................................................................................................................................................29190.0510010000000
.................................................................................................................................................................................................................................................................................................GCAGCAACA---GCA------------ACAGCAGCAGCA---GC..................................................................................................26200.0510100000000
................................................................................................................................................................................................................................................................................................AGCAGCAACA---GCA------------ACAGCAGC...........................................................................................................21200.0510100000000
.............................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---GCAAC---------AGC...................................................................................19200.0510000100000
...................................................................................................................................................................................................................................................................................................................................CAGCA---GCAAC---------AGCAG---CA---------AC---AGCA..........................................................23200.0510100000000
.......................................................................................................................................AACAGCAG------CA---------G---CAGCA---------------------------GCA........................................................................................................................................................................................................................................19200.0510000100000
.................................................................................................................................................................................................................................................................................................GCAGCAACA---GCA------------ACAGCAGCAGC........................................................................................................23200.0510100000000
.................................................................................................................................................................................................................................................................................................GCAGCAACA---GCA------------ACAGCA.............................................................................................................18200.0510100000000
.............................................................................................................................................................................................................................................................................................................GCA------------ACAGCAGCAGCA---GCAAC---------AG....................................................................................22200.0510100000000
.............................................................................................................................................................................................................................................................................................................GCA------------ACAGCAGCAGCA---GCAAC---------AGCA..................................................................................24200.0510100000000
...................................................................................................................................................................................................................................................................................................................................CAGCA---GCAAC---------AGCAG---CA---------AC---A.............................................................20200.0510000010000
.............................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAAC---AGC.........................................19200.0510000100000
........................................................................................................................AGCAACAGCAGCAGCAACAGCAG------C.........................................................................................................................................................................................................................................................................................24200.0510000000001
......................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACA---..................................................................................................................................20200.0510100000000
............................................................................................................................ACAGCAGCAGCAACAGCAG------C.........................................................................................................................................................................................................................................................................................20200.0510100000000
.........................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACA---GCA------------AC.................................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................CA------------ACAGCAGCAGCA---GCAAC---------AG....................................................................................21200.0510100000000
....................................................................................................................................................................................................................................................................................................GCAACA---GCA------------ACAGCAGCAGCA---GCA.................................................................................................24200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................CAG---CA---------AC---AGCAGCAGCAGCAAC---............................................22200.0510010000000
...........................................................................................................................AACAGCAGCAGCAACAGCAG------CA---------...............................................................................................................................................................................................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................CA------------ACAGCAGCAGCA---GCAAC---------AGC...................................................................................22200.0510100000000
............................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCA---GCAAC---------AGCAG---C.............................................................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---GCAAC---------AGCAG---C.............................................................................21200.0510100000000
..................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAAC---------AGCAG---CA---------AC---..............................................................20200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................AC---AGCAGCAGCAGCAAC---AGCAGC......................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAAC---------AGCAG---CA---------AC---AGC...........................................................23200.0510100000000
.........................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACA---GC................................................................................................................................19200.0510010000000
..................................................................................................................................GCAGCAACAGCAG------CA---------G---CAGCA---------------------------...........................................................................................................................................................................................................................................21200.0510000100000
.........................................................................................................................GCAACAGCAGCAGCAACAGCAG------CA---------G---C..........................................................................................................................................................................................................................................................................26200.0510000000001
.................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAAC---------AGCAG---CA---------AC---AGCAGCA.......................................................28200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC---AGCAGC......................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................CAACA---GCA------------ACAGCAGCAGCA---....................................................................................................20200.0510000100000
..........................................................................................................................................................................................................................................................................................................................................................GCAG---CA---------AC---AGCAGCAGCAGCAAC---AGCA........................................27200.0510000000001
.....................................................................................................................AACAGCAACAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................22200.0510000100000
.....................................................................................................................AACAGCAACAGCAGCAGC........................................................................................................................................................................................................................................................................................................18200.0510010000000
...................................................................................................................C-AACAGCAACAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................23200.0510001000000
.................................................................................................................................................................................................................................................................................................GCAGCAACA---GCA------------ACAGCAGCAGCA---GCA.................................................................................................27200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................CA---------AC---AGCAGCAGCAGCAAC---AGC.........................................22200.0510100000000
................................................................................................................................................................................................................................................................................................AGCAGCAACA---GCA------------ACAGCAGCAGCA---GC..................................................................................................27200.0510010000000
........................................................................................................................AGCAACAGCAGCAGCAACAGCAG------CA---------G---C..........................................................................................................................................................................................................................................................................27200.0510000000001
....................................................................................................................................AGCAACAGCAG------CA---------G---CAGCA---------------------------GCAGCA.....................................................................................................................................................................................................................................25200.0510100000000
droPer2
CACT--G-GCCATT---G------TATCCT------TAGCAAAGTCAACGACAGCG---------------------------GTCACAGCTTC-----------G---------------------------TGATCACAGT------CA---------A---AGTCA-------T------------AATAATA-----ACCAT---CACCAGCA---------------GCAGC------AG---------CA------------GCAGCA------ACAG------C---ACCAACA---------------GCAGCAGGCGCA---ACAGC---------AGCAG---CA---------GC---AGCAACAACATCTGC---AACACCTCCAGCA-------------------------ACAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................CACCAGCA---------------GCAGC------AG---------CA------------GCAGCA------.......................................................................................................................................................23200.051001000
droAna3
CCAG--CAGCAGCA---G------CAGCCA------CAGCA------------------ACAGCAAC---A--------------------------------------------------------------GCAGCAGCC------------ACACCATCAACAGCAGCAGACAT------------------------CCCA------GCAACA------------GCAGCA---------G------CATCAAGCACA------ACAACA---------A------CATCAGCAGCA---------------GCAGCAATCACA---ACAAC---------ATAAG---CA---------GC---AACAGCAGCAGCACC---AGCAGCAGCAACA-------------------------TCTTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCACC---AGCAGCA.....................................2170.141100000
..............................................................................................................................................................................................................................................................................AACA---------A------CATCAGCAGCA---------------GC.................................................................................................................18130.081010000
.......................................CA------------------ACAGCAAC---A--------------------------------------------------------------GCAGCAGCC------------.....................................................................................................................................................................................................................................................................................20130.081010000
...........................................................................................................................................................................................................CA------GCAACA------------GCAGCA---------G------CATCA...............................................................................................................................................................................20160.061100000
............................................................................................................................................................................................................A------GCAACA------------GCAGCA---------G------CATCA...............................................................................................................................................................................19170.061000001
...................................................................................................................................................................................................................GCAACA------------GCAGCA---------G------CATCA...............................................................................................................................................................................18200.051000001
...........................................................................................................................................................................................................CA------GCAACA------------GCAGCA---------G------CATC................................................................................................................................................................................19200.051000001
droBip1
CCCA--C-GCAACC---ACTGCCACAGCCCACGCAACA---------------------------------GCA--------------------GC---------A---------------------------GCAGCAGGT------GCAGCAA------TTGCAGCA---------------------GC---AAGTGCAACAG---T---------------TGCAACAGCA---------G---CAGCAACA------------GTTGCT------GCAG------CAACAACA------------------GCAGCAGCAGCA---ACAAC---------AACAGCAGCA---------GC------ATCAGCCAC------AGCAGCAACAACA---------ACGAC---CACC-GCCTACGCASizeHit CountTotal NormTotal
No Reads
droKik1
CCC----AACAGCA---G------CATGCA------CAGCA------------------A---------CAGCA-----------------------------------TCATGGCCATT---------CAT----------TG--------CAT------CC---GCACCACACAC------------ATC---AG------------CAGCAACAAC------AA---------------CAG---------CA------------GCAGCAGCAGCAACAA------CACCACCAGCA---------------GCAGCATCAG------CAGC------AACATGCA---CA---------GC---A---------ACAGCAGCAG---CAGC---------AACACCATGCCGCCCA-GCTGGCCCASizeHit CountTotal NormTotal
No Reads
droFic1
CAAC--A-AC---A---A------TAGTTGTGGCAACA---------------------------------GCAACAG---------C-----------------------------------------AATTGCAATAGCA------------A------TAGCAACA---------------------------GCAACAGCAA---CAGCAACA------------GCAA---------CAG---------CA------ACAGCAACAGCA---A------------CAGCAACA---GCA------------ACAGCAACAGCA---ACAGC---------AACAG---CA---------AC---AGCAACAGCAACAGC---AATAGC------------AGCAACATGCAACACACACAGCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
CACAACTTGCAGCA---A---------------------------------------------------CAGCATCAGAGTCACACACAACTGC-----------A---------------------------GCAACATAAT------CA---------G---CAACA---------------------------GCAGCAGCAACAGCAACAACAGCAGCAAC------------------AG---------CA------------GCAACA---------G------CAGCAACA---ACA------------GCAGCAACAGCA---GCAAC---------AGCAA---CA---------GC---AGCAGCAGCAACAGC---AACAGCAGCAACA-------------------------GTTGCASizeHit CountTotal NormTotal
No Reads
droRho1
CAGC--A-GC---A---A------CAGCAGCA---------------------------------------------------------GCAGC-----------A---------------------------GCAACAGCAG------CA---------G---CAACAGCAG---CA-------------C---AACAGCAGCAG---C---------------CACAGCAGCAGCAGCAACTG---------CA------------ACTGCA---------G------CAGCAACA---GCA------------ACTGCAACAGCA---ACAGC---------AACTG---CA---------GC---AGCAACAGC---AAC---TGCAGCAGCAACA-------------------------GCAACASizeHit CountTotal NormTotal
No Reads
droBia1
GCCA--AATCATCA---C------CATCAT------------------------CATCATCACCACCACCACCA-----------------------------------TCACAGTCAGC---------T------------------ACA---AC---TC---CAA---------C------------AAC---AA------------CAGCAACAAC------AACAACAACA---------GCAGCAA------CACCA------ACAGCC---------G------CTACACCAACA---------------ACAGCAATTGCA---ACACC---------AGCAG---CA---------GC---AACAACAACAACACC---AACAACACTATC------AG------------CA-ACATGC---SizeHit CountTotal NormTotal
No Reads
droTak1
GCA----ATTGGCA---A------TA--CACCG---------------------CCGCCATTGCAACTGG-----------------------------------------------------------CACCGCAACAGCAGCAAATGCA---AC---CG---C---------------------------------AACAGCAG---TACCAACA---------------GCAGCCGCAACAGCAGCAGTACCA------------ACAGCA---------G------C---A---------------------ACAGCAGCAGCA---ACAGC---------AGCCA---CA---------AC---AGCAGCAGCAACAAC---AGCCGCAGCAACA-------------------------AGATCASizeHit CountTotal NormTotal
No Reads
droEug1
CACT--C-TCAGCA---T------CACGCC------CAGCA------------------A---------CAACA-----------------------------------TCATGGCCATA---------CGC----------TG--------CAC---------CAGCATCATACAC------------AC------------------CAGCAACA------------ACAA---------CAG---------CA------GCAGCAACAACA---GCAGCAA------CA---------------------------GCAACACCACCAGCAACAGCAGCAGCAACAA---CA---------GC---A---------ACATGCACAGC---AGC---------AACATCATGCCGCCCA-GCTGGCCCASizeHit CountTotal NormTotal
No Reads
dm3
CCC----AGCATCA---G------CATCAG---------CA------------------G---------C-----------------------------------AACATCACGGCCACC---------CGT----------TG--------CAT------CC---GCATCATACAC------------ACC---AG------------CAGCAACAAC------AA---------------CAA---------CA------ACAGCAGCAGCA---GCCGCCG------CC---------GCAACACCACCAGCAGCAGCAA---CA---GCAGC---------ACGCA---CA---------GC---AGCAGC------------AGC---AGC---------AGCATCATGCCGCCCA-GCTGGCACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................T------CC---GCATCATACAC------------ACC---AG------------CAG...........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATACAC------------ACC---AG------------CAGCAAC.......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................C---------CGT----------TG--------CAT------CC---GCATCATAC................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AT------CC---GCATCATACAC------------ACC---AG------------C.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ACC---AG------------CAGCAACAAC------AA---------------CAA---------C................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GC---------ACGCA---CA---------GC---AGCAGC------------A...........................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCA---G------CATCAG---------CA------------------G---------C-----------------------------------AACA..................................................................................................................................................................................................................................................................................................................................1870.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CCACCAGCAGCAGCAA---CA---GC..................................................................................................2070.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GCAACACCACCAGCAGCAGCAA---C........................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CAC------------ACC---AG------------CAGCAACAAC------A.............................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........GCATCA---G------CATCAG---------CA------------------G---------C-----------------------------------AACA..................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......AGCATCA---G------CATCAG---------CA------------------G---------C-----------------------------------AAC...................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............A---G------CATCAG---------CA------------------G---------C-----------------------------------AACATC................................................................................................................................................................................................................................................................................................................................1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGCAGCA---GCCGCCG------CC---------GC................................................................................................................................1880.2520000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CA------ACAGCAGCAGCA---GCCGC.....................................................................................................................................................19120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002
.............................................................................................................................................................................................................................................................................................................GCAACACCACCAGCAGCAGC..............................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................CC---AG------------CAGCAACAAC------AA---------------CAA---------CA------ACA......................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CC---AG------------CAGCAACAAC------AA---------------CAA---------CA------AC.......................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................GCAACAAC------AA---------------CAA---------CA------ACAGC....................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AAC------AA---------------CAA---------CA------ACAGCAGCAGC..............................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAA---CA---GCAGC---------......................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CAACACCACCAGCAGCAGCA.............................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGC---------AGCATCATGCCC..............1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CAGCAGCAGCA---GCCGCCG------CC---------G.................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................G------------CAGCAACAAC------AA---------------CAA---------CA------ACAGCAGCA................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACACCACCAGCAGCAGCA.............................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................C---AG------------CAGCAACAAC------AA---------------CAA---------CA------ACAGC....................................................................................................................................................................25150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A---CA---------GC---AGCAGC------------AGC---AGC---------AGC.......................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................AAC------AA---------------CAA---------CA------ACAGCAGCA................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A---CA---------GC---AGCAGC------------AGC---AGC---------AGCATC....................23120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CACCACCAGCAGCAGCAA---CA---....................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CAGCAACAAC------AA---------------CAA---------CA------ACAGCAGCA................................................................................................................................................................26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A------ACAGCAGCAGCA---GCCGC.....................................................................................................................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A---CA---------GC---AGCAGC------------AGC---AGC---------AGCAT.....................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......AGCATCA---G------CATCAG---------CA------------------G---------C-----------------------------------A.....................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AG------------CAGCAACAAC------AA---------------CAA---------CA------ACAGC....................................................................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CAGCAGCAGCA---GCCGCCG------C............................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AAC------AA---------------CAA---------CA------ACAGCAGCAGCA---..........................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AGCAACAAC------AA---------------CAA---------CA------ACAGC....................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATCA---G------CATCAG---------CA------------------G---------C-----------------------------------AA....................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CAAC------AA---------------CAA---------CA------ACAGCAGCAGCA---G.........................................................................................................................................................24200.0510000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAACAAC------AA---------------CAA---------CA------ACAGCAGC.................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CA---CA---------GC---AGCAGC------------AGC---AGC---------A.........................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCA---CA---------GC---AGCAGC------------AGC---AGC---------..........................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCA---CA---------GC---AGCAGC------------AGC---AG....................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................A---------GC---AGCAGC------------AGC---AGC---------AGCATC....................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AG------------CAGCAACAAC------AA---------------CAA---------C................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AACAAC------AA---------------CAA---------CA------ACAGCAGCAGCA---G.........................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................G------------CAGCAACAAC------AA---------------CAA---------CA------ACA......................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................AA---------CA------ACAGCAGCAGCA---GC........................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................CAAC------AA---------------CAA---------CA------ACAGCAGCA................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AC------AA---------------CAA---------CA------ACAGCAGCA................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCA---CA---------GC---AGCAGC------------AGC---AGC---------A.........................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
droSim2
CGCA--CAAG---G---C------CAGCCACGC---------------------CCACAATGCCAGCAGGA--------------------------------------------------------------GCAGTAGCT------------GGAACGCCTACGACA---------------------C----CACAGCAACAG---C---------------AGCACCTGCAGCAGCAA---------------CATCA------ACAGCA---------G------CAACAACAGCA---------------GCAGCAACAGCA---ACAGC---------ATATG---TT---------GC---AGCATCCGCACACGC---ACCCGCATCC-------------------------GCATGCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................A---ACAGC---------ATATG---TT---------GC---AGCATCCGCACA..................................................2711.00100000000100000000
.........................................................................................................................................TAGCT------------GGAACGCCTACGACA---------------------C----CACAGCAT....................................................................................................................................................................................................................................2911.00100000000000010000
.........................................................................................................................................TAGCT------------GGAACGCCTACGACA---------------------C----CACAGC......................................................................................................................................................................................................................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................AACAACAGCA---------------GCAGCAACAGCA---A...................................................................................................23140.07100000000000100000
....................................................................................................................................................................................................................................................................CA------ACAGCA---------G------CAACAACAGC...................................................................................................................................19200.05100000000000100000
....................................................................................................................................................................................................................................................................CA------ACAGCA---------G------CAACAACAGCA---------------GC.................................................................................................................22200.05100000000000100000
..................................................................................................................................................................................................................................................................................................CAACAACAGCA---------------GCAGCAACAGC........................................................................................................22200.05100000000000100000
......................................................................................................................................................................................................................................................................................................AACAGCA---------------GCAGCAACAGCA---AC..................................................................................................21200.05100000000000100000
droSec2
ATC----TGCAGCA---G---------------------------------------------------CAACATCAGAGCCACTCACAGTTGC-----------A---------------------------GCAACATAAC------CA---------G---CAGCA---------------------------ACATCAGCAGCAGCAGCAACAACAGCAGC------------------AA---------CA------------ACAGCA---------G------CAACAACA---GCA------------GCAGCAACAGCA---GCAGC---------AACAG---CA---------GC---AACAACAGCACCAAC---AGCAGCAGCAACA-------------------------GTTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................CATCAGAGCCACTCACAGTTGC-----------A---------------------------..........................................................................................................................................................................................................................................................................................................2311.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................AAC---AGCAGCAGCAACA-------------------------GTT...1970.1410010
........................................................................................................................................................................................................................AACAGCAGC------------------AA---------CA------------ACAGC..............................................................................................................................................................18200.1020020
...............................................................................................................................................................................................................................................................A------------ACAGCA---------G------CAACAACA---GC................................................................................................................................18200.1020020
.........................................................................................................................................................................................................................................................................................................................................................................................CACCAAC---AGCAGCAGCAACA-------------------------......20130.0810100
........................................................................................................................................................................................................................................................................................................................................................................................GCACCAAC---AGCAGCAGCA..................................18170.0610001
........................................................................................................................................................................................................................AACAGCAGC------------------AA---------CA------------ACAGCA---------G------CAAC.........................................................................................................................................24200.0510010
.......................................................................................................................................................................................................................CAACAGCAGC------------------AA---------CA------------ACAGCA---------G------.............................................................................................................................................21200.0511000
................................................................................................................................................................................................................................................................................CA---------G------CAACAACA---GCA------------GCAGCA.............................................................................................................20200.0510100
..........................................................................................................................................................................................................................................................................................................................................................................................ACCAAC---AGCAGCAGCAACC-------------------------......19200.0510010
.......................................................................................................................................................................................................................................................................................................ACA---GCA------------GCAGCAACAGCA---....................................................................................................18200.0510010
........................................................................................................................................................................................................................AACAGCAGC------------------AA---------CA------------ACAGCA---------G------CAACA........................................................................................................................................25200.0510010
......................................................................................................................................................................................................................................................................................................................................CA---GCAGC---------AACAG---CA---------GC---AAC...........................................................19200.0510010
..............................................................................................................................................................................................................................................................CA------------ACAGCA---------G------CAACAACA---GCA------------G..................................................................................................................21200.0511000
.....................................................................................................................................................................AGCA---------------------------ACATCAGCAGCAGC.............................................................................................................................................................................................................................18200.0510010
............................................................................................................................................................................................................AGCAGCAGCAACAACAGCAGC------------------A...........................................................................................................................................................................................22200.0510010
droYak3
CCC----ACTAGCAATCA------G--------------------------------------------AAATCCAGGAGTCGAACTCAGCTGC-----------AGC--TGCGTCCACT---------C----------------------------------CTGCATCC----CTCAATAGTCTAAGCC---AG------------CAGCAACAGC------AG---------------CAG---------CA------------GCAGCAGCAGCAACAG------C---AACAGC---------------AGCAGCA---------GCAGC---------AACAC---CA---------GC---AACAGCAGCAACATC---AGCAGCAGCA----------------------CA-CACCGAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................CCAGGAGTCGAACTCAGCT...................................................................................................................................................................................................................................................................................................................................................1913.00310200000000
.........................................................................................................AGC--TGCGTCCACT---------C----------------------------------CTGC.......................................................................................................................................................................................................................................................................1811.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................GC---AACAGCAGCAACATC---AGCAGCAGCA----------------------C...........2811.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATC---AGCAGCAGC...................................20200.6012012000000000
..............................................................................................................................................................................................CC---AG------------CAGCAACAGC------AG---------------CAG---------C................................................................................................................................................................................20200.10202000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAACATC---AGCAGCAGCA----------------------............19200.10202000000000
..............................................................................................................................................................................................CC---AG------------CAGCAACAGC------AG---------------CAG---------CA------------GCAGC..............................................................................................................................................................26100.10101000000000
............................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAG------C---AACAGC---------------A...................................................................................................................24200.05101000000000
...............................................................................................................................................................................................C---AG------------CAGCAACAGC------AG---------------CAG---------CA------------GCA................................................................................................................................................................23200.05100000010000
...................................................................................................................................................................................................................GCAACAGC------AG---------------CAG---------CA------------GCAGCAGCA..........................................................................................................................................................24200.05101000000000
........................................................................................................................................................................................................................................................................................ACAG------C---AACAGC---------------AGCAGCA---------GCAGC---------......................................................................................23200.05101000000000
..................................................................................................................................................................................................................................................................................GCAGCAACAG------C---AACAGC---------------AGCAGC..............................................................................................................23200.05100100000000
...............................................................................................................................................................................................................................................................A------------GCAGCAGCAGCAACAG------C---A........................................................................................................................................19200.05100010000000
....................................................................................................................................................................................................G------------CAGCAACAGC------AG---------------CAG---------CA------------GCAGCAGC...........................................................................................................................................................26200.05101000000000
........................................................................................................................................................................................................................AGC------AG---------------CAG---------CA------------GCAGCAGCAGCAACA....................................................................................................................................................25200.05100100000000
..................................................................................................................................................................................................................................................CAG---------CA------------GCAGCAGCAGCAAC.....................................................................................................................................................19200.05101000000000
.......................................................................................................................................................................................................................................................................................AACAG------C---AACAGC---------------AGCAGCA---------GCA.................................................................................................22200.05100100000000
..........................................................................................................................................................................................................................................................................................AG------C---AACAGC---------------AGCAGCA---------GCAGC---------AACA..................................................................................25200.05101000000000
....................................................................................................................................................................................................................CAACAGC------AG---------------CAG---------CA------------GCAGCAGCAGCA.......................................................................................................................................................26200.05101000000000
...................................................................................................................................................................................................................................................................................CAGCAACAG------C---AACAGC---------------AGCAGCA---------GC..................................................................................................25200.05101000000000
...............................................................................................................................................................................................C---AG------------CAGCAACAGC------AG---------------CAG---------CA------------G..................................................................................................................................................................21200.05101000000000
droEre2
ATC----TGCAGCA---G------CAA---------------------------------------------AATCAGAGCCACTCGCAGTTGC-----------A---------------------------GCAACACAAC------CA---------G---CAGCA---------------------------GCATCAGCAGCAGCAGCAGCAGCATCAAC------------------AG---------CA------------GCAGCA---------G------CAGCAACA---GCA------------GCAACAGCAGCA---ACAGC---------AGCAG---CA---------GC---AACAACAGCAACAGC---AGCAGCAGCAACA-------------------------GCAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................AA---------------------------------------------AATCAGAGCCACTCGCAGTTGC-----------A---------------------------GCA.......................................................................................................................................................................................................................................................................................................2811.0010000100
...........GCA---G------CAA---------------------------------------------AATCAGAGCCACTCGCAGTT...................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................G------CAA---------------------------------------------AATCAGAGCCACTCGC.......................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................GCAACACAAC------CA---------G---CAGCA---------------------------GCATCAGCA..................................................................................................................................................................................................................................2711.0011000000
.............A---G------CAA---------------------------------------------AATCAGAGCCACTCGCAGTTGC-----------......................................................................................................................................................................................................................................................................................................................................2711.0010000010
.......TGCAGCA---G------CAA---------------------------------------------AATCAGAGCC.............................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...........GCA---G------CAA---------------------------------------------AATCAGAGCCACTCGCAGTTGC-----------......................................................................................................................................................................................................................................................................................................................................2911.0010000100
......................................................................................................................................................................................................................GCAGCATCAAC------------------AG---------CA------------GCAGCA---------G------CAGC.........................................................................................................................................2640.2510100000
..................................................................................................................................................................................................................................................................................................................................GCAGCA---ACAGC---------AGCAG---CA---------GC---..............................................................20200.1531000020
................................................................................................................................................................G---CAGCA---------------------------GCATCAGCAGCAGC.............................................................................................................................................................................................................................20200.1022000000
..............................................................................................................................................................................................................................................................................................................................AACAGCAGCA---ACAGC---------AGCA..................................................................................19200.1020002000
.............................................................................................................................................AC------CA---------G---CAGCA---------------------------GCATCAGC...................................................................................................................................................................................................................................18100.1010000010
..............................................................................................................................................................................................................................................................................................................CA------------GCAACAGCAGCA---ACAGC---------AGCA..................................................................................23200.1021000100
.............................................................................................................................................................................................................................................................................................................................................................G---CA---------GC---AACAACAGCAACAGC---AGCA........................................24120.0810000010
............................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAAC------------------A...........................................................................................................................................................................................22120.0811000000
..........................................................................................................................................................................................................................CATCAAC------------------AG---------CA------------GCAGCA---------G------CAGC.........................................................................................................................................22160.0610001000
..................................................................................................................................................................................................................................................................................................................................................................A---------GC---AACAACAGCAACAGC---AGCA........................................22160.0610000010
....................................................................................................................................................................CAGCA---------------------------GCATCAGCAGCAGCAGC..........................................................................................................................................................................................................................22200.0510000010
............................................................................................................................................................................................................................................................................................................................................................................GC---AACAACAGCAACAGC---AGC.........................................20200.0510100000
...........................................................................................................................................................................................................................................................................................G------CAGCAACA---GCA------------GCAACAGCAGCA---....................................................................................................24200.0510000100
...............................................................................................................................................................................................................................................................................................................A------------GCAACAGCAGCA---ACAGC---------AGCAG---CA---------GC---..............................................................27200.0511000000
...............................................................................................................................................................................................................................................................................................................A------------GCAACAGCAGCA---ACAGC---------A.....................................................................................19200.0510000100
..................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGC---AGCAGC......................................20200.0511000000
...........................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAGCAGCAACA-------------------------GC....20200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---AGCAGCAGCAACA-------------------------GCA...23200.0510000010
..........................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AGCAGCAGCAACA-------------------------GCAGCA25200.0510001000
...........................................................................................................................................................................................................................ATCAAC------------------AG---------CA------------GCAGCA---------G------CA...........................................................................................................................................19200.0510000010
............................................................................................................................................................................................................................................................................GCAGCA---------G------CAGCAACA---GCA------------...................................................................................................................18200.0511000000
.........................................................................................................................................................................................................................................................................................................A---GCA------------GCAACAGCAGCA---ACAGC---------AGCAG---..............................................................................26200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................C---AACAACAGCAACAGC---AGCAG.......................................21200.0510001000
....................................................................................................................................................................................................................................................................................................................................AGCA---ACAGC---------AGCAG---CA---------GC---A.............................................................19200.0510001000
..........................................................................................................................................................................................................................CATCAAC------------------AG---------CA------------GCAGCA---------G------CA...........................................................................................................................................20200.0510000010
..............................................................................................................................................................................................................................................................................AGCA---------G------CAGCAACA---GCA------------GCA................................................................................................................19200.0510001000
..........................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AGCAGCAGCAACA-------------------------GCAGC.24200.0510000010
.............................................................................................................................................................................................................................................................................................................................................................................C---AACAACAGCAACAGC---AGCA........................................20200.0510100000
...................................................................................................................................................................................................................................................AG---------CA------------GCAGCA---------G------CAGCAACA---GCA------------GC.................................................................................................................24200.0510100000
......................................................................................................................................................................GCA---------------------------GCATCAGCAGCAGCAGCA.........................................................................................................................................................................................................................21200.0510000100
..................................................................................................................................................................................................................................................................................................................................GCAGCA---ACAGC---------AGCAG---CA---------GC---AA............................................................22200.0511000000
.....................................................................................................................................................................................................CATCAGCAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................23200.0510001000
....................................................................................................................................................................................................GCATCAGCAGCAGCAGCAGCA......................................................................................................................................................................................................................21200.0510000010
.....................................................................................................................................................................................................................................................................................................................................GCA---ACAGC---------AGCAG---CA---------GC---AACA..........................................................21200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGC---AGCAGCAGC...................................19200.0510100000
.............................................................................................................................................................................................................................................................................................................................................................................C---AACAACAGCAACAGC---AGC.........................................19200.0511000000
...............................................................................................................................................................................................................................................................................................................................ACAGCAGCA---ACAGC---------AGCA..................................................................................18200.0510000100
..................................................................................................................................................................................................................................................................................................CAGCAACA---GCA------------GCAACAGCAGCA---....................................................................................................23200.0511000000
............................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCAGCAACA-------------------------GC....19200.0510000010
...................................................................................................................................................................................................................................................................................................................................CAGCA---ACAGC---------AGCAG---CA---------GC---AAC...........................................................22200.0510100000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGC---AGCAGCAGCA..................................23200.0510001000
................................................................................................................................................................G---CAGCA---------------------------GCATCAGCAGCAGCAGC..........................................................................................................................................................................................................................23200.0510100000

Generated: 05/17/2015 at 10:56 PM