ID:

dmo_71

 Coordinate:

scaffold_6680:1909642-1909703 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.0 -27.0 -26.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATTCTTATTTGACTCGAATCTCAGGTATCCAATATGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTTTGTGTTTGGCTAGTCGCATTCAGCCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAACTGAAAGCGAATCAAGGGAACTAGGC

***********************************..((((.((...(((.(((((.((.(((((.((((((..((.....)).....))))))))))).)).))))).)))...)).))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 V110

male body		 M046

female body

 V056

head

 V049

head
..................................................CATCGTGCACAGGTTTGAGTGTT......................................................................................... 23 0 1 467.00 467 259 176 22 8 2 0
.........................................................................................CATTCAGCCTTTGAACGGTAGA................................................... 22 0 1 128.00 128 106 14 4 4 0 0
..................................................CATCGTGCACAGGTTTGAGTGT.......................................................................................... 22 0 1 87.00 87 10 11 37 12 12 5
..................................................CATCGTGCACAGGTTTGAGTGTC......................................................................................... 23 1 1 42.00 42 42 0 0 0 0 0
..................................................CATTGTGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 17.00 17 17 0 0 0 0 0
..................................................CGTCGTGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 14.00 14 14 0 0 0 0 0
..................................................CACCGTGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 14.00 14 14 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTT........................................................................................ 24 0 1 13.00 13 0 2 6 1 3 1
...............................AATATGGGTTAGCGAGCTC................................................................................................................ 19 0 1 8.00 8 7 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGC.......................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0
.........................................................................................CGTTCAGCCTTTGAACGGTAGA................................................... 22 1 1 6.00 6 6 0 0 0 0 0
.........................................................................................CACTCAGCCTTTGAACGGTAGA................................................... 22 1 1 6.00 6 6 0 0 0 0 0
..................................................CTTCGTGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 6.00 6 6 0 0 0 0 0
..................................................CATCGGGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTG........................................................................................... 21 0 1 5.00 5 1 1 0 3 0 0
..................................................CATCGTGCACAGGGTTGAGTGTT......................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTC......................................................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGT............................................................................................ 20 0 1 3.00 3 0 1 1 1 0 0
..................................................CATCGTGCACAGGTTTGAGTGAC......................................................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..................................................CATCGTGCACCGGTTTGAGTGTT......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................CATTCATCCTTTGAACGGTAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................CATTGTGCACAGGTTTGAGTGTC......................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGAGTT......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................CGTCGTGCACAGGTTTGAGTGTC......................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................CATCGTCCACAGGTTTGAGTGTT......................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
.........................................................................................CATCCAGCCTTTGAACGGTAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................CATTCAGCCTTTGAACGGTAG.................................................... 21 0 1 2.00 2 1 0 0 1 0 0
..................................................CATCGTGCACAGGTTTGAGGGTT......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGT.......................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..............................CAATATGGGTTAGCGAGCTC................................................................................................................ 20 0 1 2.00 2 1 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTTTT...................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGCGCACAGGTTTGAGGGTTT........................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGCGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGCGCACATGTTTGCGTGTT......................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
.........................................................................................CATTCAGCCTTTGAACGGGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTTAGTG........................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................CGTTGTGCACAGGTTTGAGTGTT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGAGTC......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................CACCGTGCACAGGTTTGAGTG........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGTGTGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...................................................AGCGTGCACAGGTTTGAGTGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CACCGTGCACAGGTTTGAGTGT.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGGGT.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CAGCGGGCACAGGCTTGAGTGTT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTTCACAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGATTGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................CCATCGTGCACAGGTTTGAGTGTT......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTCAGCCTTTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CACTGTGCACAGGTTTGAGTGTC......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTTGTG..................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAG............................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0
..................................................CATCGGGCTCTGGTTTGAGTGTT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CATCGGGCACAGGTTTGAGTGT.......................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................CATGCAGCCTTTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTTC....................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0
..............................CGATATGGGTTAGCGAGCTC................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGCTTGAGTGTC......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATTCAGCCTTTGAACGGTAGA................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................CGTCGTGCACAGGTTTGAGTGTTT........................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGGGCACAGGTTTGGGTGTTT........................................................................................ 24 2 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCACCGGCTTGCGTGTT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTA......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTTTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...................................................ATCGTGCACAGGTTTGAGTGT.......................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................CTTTCAGCCTTTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CATTCAGCCTTCGAACGGTAGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTTGTT..................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................CATTCAGCCTTTGACCGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGGT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATTGTGCACAGGTTTGAGTG........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................ATATGGGTTAGCGAGCTC................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................CATACAGCCTTTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CATTCAGCCTTTGAACGGTAGAA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................AGCCATCGTGCACAGGTTTGAGTGTT......................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
..............................CAATATGGGGTAGCGAGCTC................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATTCAGCCTTTGAACGGTAGG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................CAACGCGCACAGGCTTGAGTGTT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CATCGCGCACAGGTTTGAGTGGT......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................CATCTCGCACAGGTTTGAGTGGT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTACACAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................AATTTGGGTTAGCGAGCTC................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGCGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTTT....................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCACAGGTTTGAGTGTTC........................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
......................................................GGGTACAGGTTTGAGTGTT......................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGATTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGGGAACAGGTTTGAGTGTT......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATTCAGCCTTTGAACGGTAGAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGCGCACAGGTTTGAGTGT.......................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCACAGGTTTGCGTGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.............................CCAATATGGGTTAGCGAGCTC................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCGCAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................ATCGTGCACAGGTTTGAGTGTT......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
............................TCGAATATGGGTTAGCGAGCTC................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTC......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAAGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAATGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................TCCAATATGGGTTAGCGAGCTC................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.................................................CCATCGTGCACAGGTTTGAGTGTC......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
................................................ATCATCGTGCACAGGTTTGAGTGTT......................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGCGTGT.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1
..................................................CAGCGTGCACAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTCGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................GTGCACAGGTTTGAGTGTT......................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACGGGTTTGAGTGT.......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGAACAGGTTTGAGTGTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATTGTGCACAGGTTTGAGTGT.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTCTTGCACAGGTTTGAGTGT.......................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1
..................................................CAGCGGGCACAGGTTTGCGTGTT......................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0
......................................................GGCCACAGGTTTGAGTGTT......................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
.........................................................................................CATTCAGCCTTTGAACTAGA..................................................... 20 3 6 0.17 1 1 0 0 0 0 0
...................................................................................................TTGAATGGTACAGATCGCC............................................ 19 3 9 0.11 1 1 0 0 0 0 0
.................................................................................................................TGGTCTACTCAAAAGCGAC.............................. 19 3 18 0.06 1 0 0 0 1 0 0

Anti-sense strand reads

CTAAGAATAAACTGAGCTTAGAGTCCATAGGTTATACCCAATCGCTCGAGGTAGCACGTGTCCAAACTCACAAACACAAACCGATCAGCGTAAGTCGGAAACTTGCCATCTCTACCGGTTGACTTTTCGCTGGATTGACTTTCGCTTAGTTCCCTTGATCCG

************************************..((((.((...(((.(((((.((.(((((.((((((..((.....)).....))))))))))).)).))))).)))...)).))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V049

head
............................................................................................................................................TCCGATTAGTGCCCTTGA.... 18 3 17 0.18 3 2 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6680:1909592-1909753 - dmo_71 confident GAT-----TCTTATTT-GACTCGA------------ATC-------TC---AG--GTATCCAA--------TAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA--A------------------------------GCGAATCAAG-------GGAACTAGGC
droVir3 scaffold_12758:855547-855679 - dvi-mir-955 Known_mirbase GAT-----------------------------------------------------------C---------TCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA--TA------------------------------CGGGTTGGG-------G----CAAGC
droGri2 scaffold_15110:657043-657169 + dgr_27 candidate-rescued TTC-----T-------------T---GT-AGATGAAATGGATTTAA----------------------------T-AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAA-----------------------------------------------------------------
droWil2 scf2_1100000004511:10215724-10215850 + dwi_58 confident TTATTCAAATACTTTT-GCGTTAA-------------------------------------------------------GGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAA-----------------------------------------------------------------
droAna3 scaffold_13337:7606403-7606549 + dan_53 confident TTT-----T--TAATT-TTCCTGA-----GGG--------------TG---AA--GGATGTTT---------TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATAC-AG-------------------------------------------------------AAAAC
droBip1 scf7180000395543:273545-273707 + TTT-----T--TAATT-GTGTTGA------------A-------GGTG---AA--GGCTGTTT--------TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT---TTT-TAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAGAAAA------------------------------CTAGAAGAT-----------CCTGTC
droKik1 scf7180000302391:414322-414498 + TTG-----C-----------TTTG-TGT-AGCTAAAATT------------GA--ATTCGACA---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA--TATGCTAAATTTTAATATTT--------------TATAAAG-----------CAAAAT
droFic1 scf7180000454105:1620288-1620423 + TTT-----G-----------CTTG-AGT-GGGTGAAGCA-------------------ACCTT---------TTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAA-----------------------------------------------------------------
droEle1 scf7180000491249:1960500-1960642 - GAC------------------TTA-GGT-GGGTAAAATT-----ATTG---TGGAAGGTATTT---------GTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAA-----------------------------------------------------------------
droRho1 scf7180000769770:13890-14098 - GAA-----A--TTATTTG-ACTTA-GGT-GGGTAAAATT-----ATAAT--AT--GAAGACTT---------TCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATC--TATTCGAAATTCAGA--TTACTTAAATGAAATATTATTAAGGAAAAGTT----TAAGT
droBia1 scf7180000302428:2658373-2658563 + TTT-----G----------CCTAA-GGT-GGGTAGAATA-----ATAATTACA--GGAT--TTGCTTTTC-GTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--TAA--AAACA-TTAACTTA---------------TTTTTAA-------GTAACTACTT
droTak1 scf7180000415378:64753-64955 - TGC-----G-----------TTAA-GGT-GGGTAGAATA-----ATTA---CA--GGGTATTT----TTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA--TT-CCTAATTCCTAAAAATTCCTAAA--AAAAATTGCAATTGCAATG-T----AAAGT
droEug1 scf7180000409466:1024680-1024841 + TAA-----ATTTTTTG-GGATTGTAGTTG----------------------GG--ATATTTTA--------TTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACT--TAATCAAACT-------------------------------------------TTAGT
dm3 chr3L:3299021-3299169 + dme-mir-955 Known_mirbase GTA----------------------GGTGGGGTAAAATA-----GGTA---AG--GAACACTT---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA--TT-----------------------------------------------------TTA
droSim2 3l:3196007-3196175 + dsi-mir-955 Known_mirbase GTA----------------------GGTGGGGTAAAATA-----GGTA---AA--GAACTCTT---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA--TT-ATT-------------------------ACGTATATAT-------GTATATAAAA
droSec2 scaffold_2:3291324-3291458 + GTA----------------------GGTGGGGTAAAATA-----GGTA---AT--AAACACTT---------TTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------------------------------------
droYak3 3L:3844729-3844857 + dya_46 confident ATA----------------------GGC-GGGTAAAATA-----AGTA---AA--G------------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAA-----------------------------------------------------------------
droEre2 scaffold_4784:5981972-5982120 + der_54 confident ATA----------------------ATT-GGGTAAAATA-----AGAAG--GA--ATACAC-T---------TTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA--GT----------------------------------------------------ATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAT-----TCTTATTT-GACTCGA------------ATC-------TC---AG--GTATCCAA--------TAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA--A------------------------------GCGAATCAAG-------GGAACTAGGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................CATCGTGCACAGGTTTGAGTGTT-......................................................................................................................................231467.0046781760225922
.........................................................................................................................................CATTCAGCCTTTGAACGGTAGA...........................................................................................221128.00128414001064
............................................................................................CATCGTGCACAGGTTTGAGTGT........................................................................................................................................22187.008712115121037
............................................................................................CATCGTGCACAGGTTTGAGTGTC-......................................................................................................................................23142.00420000420
............................................................................................CATCGTGCACAGGTTTGAGTGTT-T.....................................................................................................................................24113.0013121306
.............................................................AA--------TAT----GGGTTAGCGAGCTC..............................................................................................................................................................1918.008010070
............................................................................................CATCGTGCACAGGTTTGAGTGC........................................................................................................................................2217.007000070
............................................................................................CATCGTGCACAGGTTTGAGTG.........................................................................................................................................2115.005310010
............................................................................................CATCGTGCACAGGTTTGAGT..........................................................................................................................................2013.003110001
............................................................................................CATCGTGCACAGGTTTGAGTGAC-......................................................................................................................................2313.003000030
.........................................................................................................................................CATTCAGCCTTTGAACGGTAG............................................................................................2112.002100010
............................................................CAA--------TAT----GGGTTAGCGAGCTC..............................................................................................................................................................2012.002010010
...........................................................................................CCATCGTGCACAGGTTTGAGTGTT-......................................................................................................................................2411.001000010
............................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G...............................................................................................................................2711.001010000
............................................................................................CATCGTGCACAGGTTTGAG...........................................................................................................................................1911.001000001
............................................................................................CATCGTGCACAGGTTTGAGTGTT-TC....................................................................................................................................2511.001100000
..........................................................................................................................................ATTCAGCCTTTGAACGGTAGA...........................................................................................2111.001000010
............................................................................................CATCGTGCACAGGTTTGAGTGTA-......................................................................................................................................2311.001000010
.............................................................................................ATCGTGCACAGGTTTGAGTGT........................................................................................................................................2111.001100000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T...............................................................................................................................2711.001010000
..............................................................A--------TAT----GGGTTAGCGAGCTC..............................................................................................................................................................1811.001000010
.........................................................................................................................................CATTCAGCCTTTGAACGGTAGAA..........................................................................................2311.001000010
..........................................................................................................................................ATTCAGCCTTTGAACGGTAGG...........................................................................................2111.001000010
............................................................................................CATCGTGCACAGGTTTGAGTGTT-TT....................................................................................................................................2511.001100000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-C.....................................................................................................................................2411.001010000
..........................................................................................................................................ATTCAGCCTTTGAACGGTAGAA..........................................................................................2211.001000010
...........................................................CCAA--------TAT----GGGTTAGCGAGCTC..............................................................................................................................................................2111.001000010
.............................................................................................ATCGTGCACAGGTTTGAGTGTT-......................................................................................................................................2211.001000010
..........................................................TCCAA--------TAT----GGGTTAGCGAGCTC..............................................................................................................................................................2211.001000010
...........................................................................................CCATCGTGCACAGGTTTGAGTGTC-......................................................................................................................................2411.001000010
................................................................................................GTGCACAGGTTTGAGTGTT-......................................................................................................................................1911.001010000
droVir3
GAT-----------------------------------------------------------C---------TCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA--TA------------------------------CGGGTTGGG-------G----CAAGCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................CATCGTGCACAGGTTTGAGTGT........................................................................................................................................221108.001080013232011000041322141102101215158020000330000000000000000001135500000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-......................................................................................................................................23190.00901011310100000001003200020000020110000010000000000000000000013440100000000100000001
............................................................................................CATCGTGCACAGGTTTGAGTGTT-T.....................................................................................................................................24117.00170011000000000021032102200000100000000000000000000000000000000100000000000000000
.........................................................................................................................................CATTCAACCTTTGAACGGTAGA...........................................................................................22117.00170016000000000000010001000000000100000000000000000000000000411000000000001000000
............................................................................................CATCGTGCACAGGTTTGAGTG.........................................................................................................................................2117.0070000000000000010000200000000000100000001000000000000000000000100000000010000000
............................................................................................CATCGTGCACAGGTTTGAGT..........................................................................................................................................2015.0050000000000000010000001100000100100000000000000000000000000000000000000000000000
.........................................................................................................................................CATTCAACCTTTGAACGG...............................................................................................1814.0040000000000000000000000000000000000000000000100000000000000300000000000000000000
............................................................................................CATCGTGCACAGGTTTGAG...........................................................................................................................................1914.0040000000001000000000000000001010100000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-C.....................................................................................................................................2412.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CCATCGTGCACAGGTTTGAGTGT........................................................................................................................................2312.0020000000000000002000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTC-......................................................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCAACCTTTGAACGGTAGAG..........................................................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................GTGCACAGGTTTGAGTGT........................................................................................................................................1811.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-CT....................................................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-AT....................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-A.....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-AA....................................................................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGTT-TT....................................................................................................................................2511.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
........................................................................TCTCATCAGTTAGCTAGCTC..............................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGA............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................ATTCAACCTTTGAACGGTAGA...........................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA...........................................................................................3911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................CATTCAACCTTTGAACGGTAG............................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCACAGGTTTGAGTGA........................................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................TTCAACCTTTGAACGGTAGA...........................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCAACCTTTGAACGGTAGAGA.........................................................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
TTC-----T-------------T---GT-AGATGAAATGGATTTAA----------------------------T-AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAA-----------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................CATCGTGCACGGGTTTGAGTGT........................................................................................................................................22161.00612041
............................................................................................CATCGTGCACGGGTTTGAGTG.........................................................................................................................................21155.00551144
............................................................................................CATCGTGCACGGGTTTGAGT..........................................................................................................................................20120.0020416
............................................................................................CATCGTGCACGGGTTTGAGTGTC-......................................................................................................................................2316.00615
.............................................................................................ATCGTGCACGGGTTTGAGTG.........................................................................................................................................2013.00321
............................................................................................CATCGTGCACGGGTTTGAGTGA........................................................................................................................................2212.00202
.............................................................................................ATCGTGCACGGGTTTGAGTGT........................................................................................................................................2112.00220
............................................................................................CATCGTGCACGGGTTTGAGTGTC-T.....................................................................................................................................2412.00211
............................................................................................CATCGTGCACGGGTTTGAGTGTT-......................................................................................................................................2311.00110
.........................................................................................................................................CATTCAGCCCCTGGACGCTAGA...........................................................................................2211.00110
............................................................................................CATCGTGCACGGGTTTGAGTGTC-A.....................................................................................................................................2411.00101
.............................................................................................ATCGTGCACGGGTTTGAGTGTC-......................................................................................................................................2211.00101
...............................................................................................CGTGCACGGGTTTGAGTGT........................................................................................................................................1911.00110
...........................................................................................CCATCGTGCACGGGTTTGAGT..........................................................................................................................................2111.00110
droWil2
TTATTCAAATACTTTT-GCGTTAA-------------------------------------------------------GGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAA-----------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................CATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................................231674.0067471265311
............................................................................................CATCGTGCTTAGGTTTGAGTGT........................................................................................................................................221119.0011932326814
............................................................................................CATCGTGCTTAGGTTTGAGTG.........................................................................................................................................21142.00421011282
............................................................................................CATCGTGCTTAGGTTTGAGTGTCT......................................................................................................................................24130.00301510104
.........................................................................................................................................CATTCAACCTTGGAGCGATAGA...........................................................................................2219.00900090
.............................................................................................ATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................................2215.00500050
............................................................................................CATCGTGCTTAGGTTTGAGTGTCC......................................................................................................................................2414.00420020
............................................................................................CATCGTGCTTAGGTTTGAGTGTCA......................................................................................................................................2413.00300021
............................................................................................CATCGTGCTTAGGTTTGAGTGC........................................................................................................................................2213.00330000
.............................................................................................ATCGTGCTTAGGTTTGAGTGT........................................................................................................................................2112.00200011
................................................................................................GTGCTTAGGTTTGAGTGTC.......................................................................................................................................1912.00200020
............................................................................................CATCGTGCTTAGGTTTGAGT..........................................................................................................................................2012.00200020
............................................................................................CATCGTGCTTAGGTTTGAGTGG........................................................................................................................................2212.00220000
.............................................................................................ATCGTGCTTAGGTTTGAGTGTCT......................................................................................................................................2312.00200011
............................................................................................CATCGTGCTTAGGTTTGAGTGTCAA.....................................................................................................................................2512.00200020
................................................................................................GTGCTTAGGTTTGAGTGT........................................................................................................................................1811.00100001
.........................................................................................................................................CATTCAACCTTGGAGCGATAG............................................................................................2111.00100010
............................................................................................CATCGTGCTTAGGTTTGAGTGTT.......................................................................................................................................2311.00100010
......................................................................................................................................TGGCATTCAACCTTGGAGCGATA.............................................................................................2311.00100010
............................................................................................CATCGTGCTTAGGTTTGAG...........................................................................................................................................1911.00100100
....................................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA..........................................................................................2711.00100010
............................................................................................CATCGTGCTTAGGTTTGAGTGTA.......................................................................................................................................2311.00101000
...........................................................................................CCATCGTGCTTAGGTTTGAGTG.........................................................................................................................................2211.00100010
..........................................................................................................................................ATTCAACCTTGGAGCGATAGA...........................................................................................2111.00101000
...........................................................................................CCATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................................2411.00100010
............................................................................................CATCGTGCTTAGGTTTGAGTGTCG......................................................................................................................................2411.00110000
droAna3
TTT-----T--TAATT-TTCCTGA-----GGG--------------TG---AA--GGATGTTT---------TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATAC-AG-------------------------------------------------------AAAACSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................231158.0015813851382118
............................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................................221149.0014912133196240
............................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................24157.0057416621613
............................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................................21148.004843222116
.........................................................................................................................................CATTCAACCTTTGGACGGTAGA...........................................................................................22133.00337191141
............................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................................20112.0012210351
..............................................................................................TCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2218.008700001
...........................................................................................................................................TTCAACCTTTGGACGGTAGAG..........................................................................................2118.008310040
............................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................................2217.007060100
.........................................................................................................................................CATTCAACCTTTGGACGGTAG............................................................................................2116.006410100
............................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................2316.006000132
...........................................................................................................................................TTCAACCTTTGGACGGTAGAGT.........................................................................................2215.005120110
............................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................2413.003030000
...........................................................................................CCATCGTGCAGAGGTTTGAGTGT........................................................................................................................................2313.003100011
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2313.003000003
...........................................................................................................................................TTCAACCTTTGGACGGTAGAGA.........................................................................................2212.002010001
.............................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................................2012.002100010
..........................................................................................................................................ATTCAACCTTTGGACGGTAGA...........................................................................................2112.002110000
............................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................................2112.002001010
..............................................................................................TCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................2111.001001000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................2211.001100000
...........................................................................................................................................TTCAACCTTTGGACGGTAGA...........................................................................................2011.001000100
............................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................................1911.001000010
............................................................................................................................................TCAACCTTTGGACGGTAGAG..........................................................................................2011.001100000
.......................................................................................................................................CGCATTCAACCTTTGGACGGTAGTT..........................................................................................2511.001010000
..........................................................................................................................................ATTCAACCTTTGGACGGTAGAGT.........................................................................................2311.001010000
.......................................................................................................................................CGCATTCAACCTTTGGACGGTAG............................................................................................2311.001001000
...........................................................................................CCATCGTGCAGAGGTTTGAGT..........................................................................................................................................2111.001010000
............................................................................................CATCGTGCAGAGGTTTGAGTA.........................................................................................................................................2111.001000010
.........................................................................................................................................CATTCAACCTTTGGACGGTAGT...........................................................................................2211.001010000
.............................................................TT---------TTTGAGAAGCTCATCAGCTC..............................................................................................................................................................2211.001010000
............................................................................................CATCGTGCAGAGGTTTGAT...........................................................................................................................................1911.001000001
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................................2311.001000010
..........................................................................................................................................ATTCAACCTTTGGACGGTAGAG..........................................................................................2211.001100000
............................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................................2211.001000010
............................................................................................CATCGTGCAGAGGTTTGAGTGTCTA.....................................................................................................................................2511.001001000
...........................................................................................................................................TTCAACCTTTGGACGGTAGTTT.........................................................................................2211.001100000
.........................................................................................................................................CATTCAACCTTTGGACGGTTTT...........................................................................................2230.331100000
droBip1
TTT-----T--TAATT-GTGTTGA------------A-------GGTG---AA--GGCTGTTT--------TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT---TTT-TAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAGAAAA------------------------------CTAGAAGAT-----------CCTGTCSizeHit CountTotal NormTotal
No Reads
droKik1
TTG-----C-----------TTTG-TGT-AGCTAAAATT------------GA--ATTCGACA---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA--TATGCTAAATTTTAATATTT--------------TATAAAG-----------CAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
TTT-----G-----------CTTG-AGT-GGGTGAAGCA-------------------ACCTT---------TTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAA-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAC------------------TTA-GGT-GGGTAAAATT-----ATTG---TGGAAGGTATTT---------GTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAA-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAA-----A--TTATTTG-ACTTA-GGT-GGGTAAAATT-----ATAAT--AT--GAAGACTT---------TCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATC--TATTCGAAATTCAGA--TTACTTAAATGAAATATTATTAAGGAAAAGTT----TAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
TTT-----G----------CCTAA-GGT-GGGTAGAATA-----ATAATTACA--GGAT--TTGCTTTTC-GTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--TAA--AAACA-TTAACTTA---------------TTTTTAA-------GTAACTACTTSizeHit CountTotal NormTotal
No Reads
droTak1
TGC-----G-----------TTAA-GGT-GGGTAGAATA-----ATTA---CA--GGGTATTT----TTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA--TT-CCTAATTCCTAAAAATTCCTAAA--AAAAATTGCAATTGCAATG-T----AAAGTSizeHit CountTotal NormTotal
No Reads
droEug1
TAA-----ATTTTTTG-GGATTGTAGTTG----------------------GG--ATATTTTA--------TTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACT--TAATCAAACT-------------------------------------------TTAGTSizeHit CountTotal NormTotal
No Reads
dm3
GTA----------------------GGTGGGGTAAAATA-----GGTA---AG--GAACACTT---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA--TT-----------------------------------------------------TTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................2311904.0019040000010016000006000000000001000000003003004212203112200000000000000000000000000000042000559630142171092123200000030128060000000000000000000000000103411153441402000000000002004410080013020001006213390011729000001200000003012843380081011002020000027112711000001001002833503500000004100202111011001011143310910504723200299012140217153410157411065116501571104770
............................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................................2211634.001634000001000300000000001014000000000000302200231031110450004300000000000000000000000000000011531052222221188100000011015001020001170100000000000000200003431454021000000000003202002124020800000013590100301352000000400000700137137173031123538002000000015596001000081030001018000020000111001712632633111020001236137118032312271362214060200009200220009200130109396110001020
............................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................................211579.00579000000000100000000000002000100000000200110100100200120001100000000000000000000000000000000020010200050000000000000000100010000000000000000001100010112310000000000000020002101020000000000030110001081000000000000000001257614002913110000000051240001000510100140140000000000000001501203021100041442253870027613901911000351110001000102014729104000610
............................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................................201175.00175000000000000000000000001000000000000000000001000000110000100000000000000000000000000000010001010100000000000000000001000000100000000000000000000101008100000000000000010100000000000000000111000000040000000000000000102064004501000000000055000000000000000000010000000000001601030000000232102520025446061000065000000100000112110000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................................22185.008500000000000000000000000000000000000000000200100000130000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000100000000000000010000000010000000000011000001000000000000000000035100119010000000000915000000000000000000000000000200000101001000000000001600000002000001000000000000001000000000000
............................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................................19162.0062000000000000000000000000000000101000000000000010000100000000000000000000000000000000000000000001000000000000000000000000010001000000000000000000000003000000000000000110010000100020000000000100000000000000000000000181100010000000000000000000000000000000000000000000000200102010000003420021000001003200003000000100000021200000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................24142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000030000101000000000003000000000001000001000000000000000000000000000001000310000001002000000000000200000332361000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000010000000000010100000000000000003000000000000000000000000000000000000000000000011000610000000000100000000000100000000110000100
.........................................................................................................................................CATTCAATTTCTGAACGGTAG............................................................................................21121.0021000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000110100020001010000001000000000000000000000000000000021100100000000000000000000000000000000000000000000000011000000000000200000000000000000000000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................................21118.0018000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000100000000000000000000000000100000000000000000001100000001000000000000000000000000000000000000000010400000000000000001000000000000001101000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000002100000000000000000000000000000000010200000000000010100010000102000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000001000000000000110000000010000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000010000000000001000000000000000000000000000000000000000000000000000000000000103000000000000000000010000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000001000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTA.......................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGA............................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000
................................................................................................GTGCAGAGGTTTGAGTGT........................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................TGGCCAGCTAATCAACTCC.............................................................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000
..........................................................................TGGCCAGCTAATCAACTC..............................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTATC.....................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAT...........................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000
................................................................................................GTGCAGAGGTTTGAGTGTA.......................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................................2412.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
............................................................................................CATCGTGCAGAGGTTTGAGG..........................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGA..........................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGAA..........................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................TTGGCCAGCTAATCAACTC..............................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CATTCAATTTCTGAACGGT..............................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGAA.........................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTAT......................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTAA........................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGAATC........................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GTGCAGAGGTTTGAGTGTC.......................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCAATTTCTGAACGGTAGAGA.........................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
GTA----------------------GGTGGGGTAAAATA-----GGTA---AA--GAACTCTT---------TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA--TT-ATT-------------------------ACGTATATAT-------GTATATAAAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................231882.008825043613900513339525113
............................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................................221171.00171204100126131158413200
.............................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................221162.0016210124003000212910010
.........................................................................................................................................CATTCAATTTCTGCACGGTAGT...........................................................................................221110.00110518500020670400000
............................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................................21188.00883013022120126001100
..........................................................................TGGCCAGCTAATCAACTC..............................................................................................................................................................18164.0064006400000000000000
.........................................................................................................................................CATTCAATTTCTGCACGG...............................................................................................18151.0051005000100000000000
.........................................................................................................................................CATTCAATTTCTGCACGGTAGA...........................................................................................22149.00490014000229501700000
.........................................................................................................................................CATTCAATTTCTGCACGGTAG............................................................................................21137.00370014001123151000000
.........................................................................TTGGCCAGCTAATCAACTC..............................................................................................................................................................19133.0033003200000000100000
.............................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................................21128.002820800024124401000
..........................................................................TGGCCAGCTAATCAACTCC.............................................................................................................................................................19117.001700800100000800000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................23114.001410501100000600000
............................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................................22113.0013201100000000000000
............................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................................20113.001300000141211300000
........................................................................TTTGGCCAGCTAATCAACTC..............................................................................................................................................................20112.0012001200000000000000
............................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................................19111.001120602001000000000
.........................................................................................................................................CATTCAATTTCTGCACGGTAGG...........................................................................................2218.00810600000000100000
............................................................................................CATCGTGCAGAGGTTTGA............................................................................................................................................1816.00600002400000000000
..............................................................T---------TTTGGCCAGCTAATCAACTC..............................................................................................................................................................2116.00600600000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG....................................................................................................................................2516.00600400000000200000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2315.00500400000000100000
.........................................................................TTGGCCAGCTAATCAACTCC.............................................................................................................................................................2015.00500500000000000000
.........................................................................................................................................CATTCAATTTCTGCACGGTAGC...........................................................................................2215.00500400000010000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2415.00500300000000200000
.........................................................................................................................................CATTCAATTTCTGCACGGTAGTT..........................................................................................2314.00400100010110000000
............................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................................2214.00400000022000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................................2413.00300200000000100000
............................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................................2213.00300300000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................2413.00300100100010000000
.............................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................................1913.00300000000003000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................................2312.00200000000000200000
........................................................................TTTGGCCAGCTAATCAACTCC.............................................................................................................................................................2112.00200200000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................2212.00200000000010001000
..............................................................................................TCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................................2312.00200200000000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................................2012.00210000100000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................................2312.00200100000100000000
.........................................................................................................................................CATTCAATTTCTGCACGGTA.............................................................................................2011.00100000000001000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGC........................................................................................................................................2111.00100100000000000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................2311.00100000000000100000
............................................................................................CATCGTGCAGAGGTTTGT............................................................................................................................................1811.00110000000000000000
............................................................................................CATCGTGCAGAGGTTTGAGA..........................................................................................................................................2011.00100000001000000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGG........................................................................................................................................2111.00100100000000000000
............................................................................................CATCGTGCAGAGGTTTGC............................................................................................................................................1811.00110000000000000000
..........................................................................................................................................ATTCAATTTCTGCACGGTAGA...........................................................................................2111.00100000000000100000
..............................................................................................TCGTGCAGAGGTTTGAGTGTCC......................................................................................................................................2211.00100100000000000000
................................................................................................GTGCAGAGGTTTGAGTGTC.......................................................................................................................................1911.00100000000001000000
................................................................................................GTGCAGAGGTTTGAGT..........................................................................................................................................1611.00100000000001000000
..........................................................................TGGCCAGCTAATCAACTCCC............................................................................................................................................................2011.00100000000000100000
.........................................................................................................................................CATTCAATTTCTGCACGGTAGTA..........................................................................................2311.00100000000010000000
.........................................................ACTCTT---------TTTGGCCAGCT.......................................................................................................................................................................1730.33100000000001000000
droSec2
GTA----------------------GGTGGGGTAAAATA-----GGTA---AT--AAACACTT---------TTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
ATA----------------------GGC-GGGTAAAATA-----AGTA---AA--G------------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAA-----------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................CATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................................2311520.0015206816121120604150000
............................................................................................CATCGTGCAGAAGTTTGAGTGT........................................................................................................................................221151.0015127213416812330000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................................22135.0035033020000000
.............................................................................................ATCGTGCAGAAGTTTGAGTGTCC......................................................................................................................................23130.0030002910000000
............................................................................................CATCGTGCAGAAGTTTGAGTGTCT......................................................................................................................................24129.00291221100130000
.............................................................................................ATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................................22122.0022121540000000
............................................................................................CATCGTGCAGAAGTTTGAGTGC........................................................................................................................................22118.0018401200020000
............................................................................................CATCGTGCAGAAGTTTGAGTGTCC......................................................................................................................................24113.0013101100010000
............................................................................................CATCGTGCAGAAGTTTGAGTG.........................................................................................................................................2119.00902010150000
.............................................................................................ATCGTGCAGAAGTTTGAGTGTCT......................................................................................................................................2315.00531100000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................................2215.00500500000000
..........................................................................................................................................ATTCAATTTCTGAACGGTAGAGT.........................................................................................2314.00420200000000
..........................................................................TAAACAGCTAATCAACTCC.............................................................................................................................................................1914.00400310000000
............................................................................................CATCGTGCAGAAGTTTGAGT..........................................................................................................................................2013.00301000020000
................................................................................................GTGCAGAAGTTTGAGTGTC.......................................................................................................................................1913.00300300000000
...........................................................................................CCATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................................2413.00300300000000
............................................................................................CATCGTGCAGAAGTTTGAGTGTT.......................................................................................................................................2313.00300100020000
..............................................................................................TCGTGCAGAAGTTTGAGTGTCCTG....................................................................................................................................2412.00200110000000
.......................................................G------------------TAAACAGCTAATCAACTC..............................................................................................................................................................1912.00200200000000
............................................................................................CATCGTGCAGAAGTTTGAGTGG........................................................................................................................................2212.00220000000000
............................................................................................CATCGTGCAGAAGTTTGAGTGTG.......................................................................................................................................2312.00200110000000
.............................................................................................ATCGTGCAGAAGTTTGAGTGTCCT.....................................................................................................................................2412.00200200000000
............................................................................................CATCGTGCAGAAGTTTGAGTGA........................................................................................................................................2211.00100000010000
............................................................................................CATCGTGCAGAAGTTTGAGA..........................................................................................................................................2011.00100000100000
..............................................................................................TCGTGCAGAAGTTTGAGTGTCCC.....................................................................................................................................2311.00100100000000
............................................................................................CATCGTGCAGAAGTTTGAGC..........................................................................................................................................2011.00100100000000
.............................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG....................................................................................................................................2511.00100010000000
..........................................................................TAAACAGCTAATCAACTC..............................................................................................................................................................1811.00100100000000
............................................................................................CATCGTGCAGAAGTTTGAGTGTCA......................................................................................................................................2411.00100010000000
.............................................................................................................................................CAATTTCTGAACGGTAGT...........................................................................................1811.00100100000000
.........................................................................................................................................CATTCAATTTCTGAACGGTAGC...........................................................................................2211.00100100000000
...........................................................................................................................................TTCAATTTCTGAACGGTAGAGT.........................................................................................2211.00100100000000
..............................................................................................TCGTGCAGAAGTTTGAGTGT........................................................................................................................................2011.00100100000000
............................................................................................CATCGTGCAGAAGTTTGAGTT.........................................................................................................................................2111.00100000010000
............................................................................................CATCGTGCAGAAGTTTGAG...........................................................................................................................................1911.00100100000000
..........................................................................................................................................ATTCAATTTCTGAACGGTAGA...........................................................................................2111.00100100000000
...........................................................................................CCATCGTGCAGAAGTTTGAGTGT........................................................................................................................................2311.00100010000000
droEre2
ATA----------------------ATT-GGGTAAAATA-----AGAAG--GA--ATACAC-T---------TTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA--GT----------------------------------------------------ATTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................................221532.00532401218571852146
............................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................231411.0041112100122839310
............................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................................211293.00293172941731510
............................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................24139.003913168200
............................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................................20135.0035401215130
.........................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................................22114.00144502300
.............................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................................21113.00132100730
.............................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................................22110.00101200610
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2319.0090402030
............................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................................1918.0080100520
............................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................................2315.0051001210
............................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................................2214.0040000220
............................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................................2312.0020001010
............................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................................2212.0020200000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................................2412.0020001010
..............................................................................................TCGTGCAGAGGTTTGAGTGTCT......................................................................................................................................2212.0022000000
............................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................................2112.0021000010
.........................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................................2211.0010000100
............................................................................................CATCGTGCAGAGGTTTGAGTC.........................................................................................................................................2111.0011000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCTG.....................................................................................................................................2511.0010001000
............................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA....................................................................................................................................2611.0010000010
............................................................................................CATCGTGCAGAGGTTTGAGTA.........................................................................................................................................2111.0010000100
.........................................................................................................................................CATTCAATTTCTGAACGGTAGAA..........................................................................................2311.0011000000
............................................................................................CATCGTGCAGAGGTTTGAGTGTA.......................................................................................................................................2311.0011000000
.............................................................................................ATCGTGCAGAGGTTTGAGTGTCTT.....................................................................................................................................2411.0010000010
.............................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................................2011.0010000010
.............................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................................1911.0010001000
............................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................................2211.0010001000
..........................................................................TGTCCAGCTAATCAACTCC.............................................................................................................................................................1911.0010100000

Generated: 10/20/2015 at 07:41 PM