ID:

dmo_707

 Coordinate:

scaffold_6473:8642297-8642447 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.0 -19.7 -19.7

Flybase annnotation

CDS [Dmoj\GI15692-cds]; exon [dmoj_GLEANR_16410:4]; intron [Dmoj\GI15692-in]

Repeatable elements

NameClassFamilyStrand
Helena_DsLINEJockey+
mature
  1. scaffold_885:70-92 -
  2. scaffold_1873:896-918 +
  3. scaffold_3958:2476-2498 +
  4. scaffold_4387:1826-1848 +
  5. scaffold_4387:5855-5877 +
  6. scaffold_6463:3723-3745 -
  7. dmo_707  scaffold_6473:8642323-8642345 +
  8. scaffold_6482:1041660-1041682 +
  9. scaffold_6482:2243734-2243756 -
  10. scaffold_6496:110367-110389 -
  11. scaffold_6496:24408435-24408457 -
  12. scaffold_6498:349560-349582 +
  13. scaffold_6500:2826585-2826607 +
  14. scaffold_6500:15064645-15064667 +
  15. scaffold_6540:6787969-6787991 -
  16. scaffold_6540:9425365-9425387 -
  17. scaffold_6540:30770529-30770551 -
  18. scaffold_6541:1321444-1321466 -
star
  1. scaffold_3958:2549-2573 +
  2. scaffold_4387:1899-1923 +
  3. scaffold_4387:5928-5952 +
  4. dmo_707  scaffold_6473:8642396-8642420 +
  5. scaffold_6496:110291-110315 -
  6. scaffold_6496:24495575-24495599 -
  7. scaffold_6498:349633-349657 +
  8. scaffold_6500:2826658-2826682 +
  9. scaffold_6540:2829288-2829312 +
  10. scaffold_6540:6787894-6787918 -
  11. scaffold_6540:9425290-9425314 -
  12. scaffold_6540:30770454-30770478 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################--------------------------------
GAGACCTCAAGCTGTCTACTGTCGAAGAACAAATAAATAAACACACAAGCAGATACTCAGACAGACTTGTACGACATCAAAGCCTACTCGCAAGAGGTCTAACACCTGCCAGACCCCTAAGACGACTTAAACGGCAGGGCTTTGCCAAAACAATGGGTATTCAATAAATATTATTATTATTATTTTTCTTTTTTTTCTCAGTCCTCACAAATTGAGTGAGGTTTGGCTCTAATTTTATGTATATATATGTG
****************************************************************************.((((((...(((....)))........((((((......................))))))))))))(((......)))..................***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
......................CGAAGAACAAATAAATAAACACACAAG.......................................................................................................................................................................................................... 27 0 12 0.75 9 8 1 0 0
...................................................................................................................................................................................TTATTTTTCTTTTTTTTCTCAGTCCTC............................................. 27 0 3 0.33 1 1 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGTC........................................................................................................................................................ 23 0 18 0.33 6 4 0 1 1
.....................................................TACTCAGACAGACTTGTACGACA............................................................................................................................................................................... 23 0 13 0.31 4 4 0 0 0
......................CGAAGAACAAATAAATAAACACACA............................................................................................................................................................................................................ 25 0 13 0.31 4 4 0 0 0
.....................................................................................................................................................ACAATGGGTATTCAATAAATATTAT............................................................................. 25 0 12 0.25 3 3 0 0 0
.....................................................................................................................................................ACAATGGGTATTCAATAAATATTATT............................................................................ 26 0 12 0.25 3 3 0 0 0
......................CGAAGAACAAATAAATAAACACACAAGC......................................................................................................................................................................................................... 28 0 12 0.25 3 3 0 0 0
................................................................................................................................................................................TTCTTTTTTTTCTTTTTTTTCTCAGTCC............................................... 28 2 4 0.25 1 1 0 0 0
.....................................................................................................................................................ACAATGGGTATTCAATAAATATT............................................................................... 23 0 12 0.25 3 3 0 0 0
......................CGAAGAACAAATAAATAAACACAC............................................................................................................................................................................................................. 24 0 13 0.23 3 2 1 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGTCTAAC.................................................................................................................................................... 27 0 18 0.22 4 4 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGTCTAACA................................................................................................................................................... 28 0 18 0.17 3 3 0 0 0
.....................................................................................................................................................ACAATGGGTATTCAATAAATATTA.............................................................................. 24 0 12 0.17 2 2 0 0 0
......................CGAAGAACAAATAAATAAACACACAA........................................................................................................................................................................................................... 26 0 12 0.17 2 2 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGTCT....................................................................................................................................................... 24 0 18 0.17 3 2 1 0 0
..........................................................................................................TGCCAGACCCCTAAGACGACTTAAAC....................................................................................................................... 26 0 20 0.15 3 3 0 0 0
..........................................................................................................TGCCAGACCCCTAAGACGACTTAAACGGC.................................................................................................................... 29 0 20 0.15 3 3 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGTCTAA..................................................................................................................................................... 26 0 18 0.11 2 2 0 0 0
.............................................................................CAAAGCCTACTCGCAAGAGGTCT....................................................................................................................................................... 23 0 18 0.11 2 2 0 0 0
................................................................................................................ACCCCTAAGACGACTTAAACGGCAGG................................................................................................................. 26 0 20 0.10 2 2 0 0 0
................................................................................................................ACCCCTAAGACGACTTAAACGGCA................................................................................................................... 24 0 20 0.10 2 2 0 0 0
.....................................................................................................................................................ACAATGGGTATTCAATAAATATTATTAT.......................................................................... 28 0 12 0.08 1 0 1 0 0
.......................GAAGAACAAATAAATAAACACACAAGC......................................................................................................................................................................................................... 27 0 12 0.08 1 1 0 0 0
..................................................................................................................................................AAAACAATGGGTATTCAATAAATATTA.............................................................................. 27 0 12 0.08 1 1 0 0 0
......................CGAAGAACAAATAAATAAACACACAAGCA........................................................................................................................................................................................................ 29 0 12 0.08 1 1 0 0 0
.....................TCGAAGAACAAATAAATAAACACACAAGC......................................................................................................................................................................................................... 29 0 12 0.08 1 1 0 0 0
........................................................................................................................................................ATGGGTATTCAATAAATATTATTAT.......................................................................... 25 0 12 0.08 1 0 1 0 0
......................................................................................................................................................CAATGGGTATTCAATAAATATTATT............................................................................ 25 0 12 0.08 1 1 0 0 0
......................CGAAGAGCAAATAAATAAACACAC............................................................................................................................................................................................................. 24 1 13 0.08 1 0 1 0 0
.....................................................TACTCAGACAGACTTGTACGACATCAA........................................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0
......................CTAAGAACAAATAAATAAACACACA............................................................................................................................................................................................................ 25 1 13 0.08 1 0 1 0 0
......................CGAAGAACAAATAAATAAACAC............................................................................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0
.....................................................TACTCAGGCAGACTTGTACGACA............................................................................................................................................................................... 23 1 13 0.08 1 1 0 0 0
.....................................................TACTCAGACAGACCTGTACGAC................................................................................................................................................................................ 22 1 13 0.08 1 1 0 0 0
....................................................ATACTCAGACAGACTTGT..................................................................................................................................................................................... 18 0 14 0.07 1 0 1 0 0
......................................................ACTCAGGCAGACTTGTACGA................................................................................................................................................................................. 20 1 14 0.07 1 1 0 0 0
.........................AGAACAAATAAATAAACAC............................................................................................................................................................................................................... 19 0 15 0.07 1 1 0 0 0
.............................................................................................................................................................................................TTTTTTTCTCAGTCCTCACAAATTG..................................... 25 0 17 0.06 1 1 0 0 0
......................................................................................CTCGCAAGAGGTCTAACACCTGC.............................................................................................................................................. 23 0 18 0.06 1 1 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGG.......................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAGGT......................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0
..................................................................................CCTACTCGCAAGAGGTCTAACACCTGCCC............................................................................................................................................ 29 1 18 0.06 1 1 0 0 0
............................................................................TCAAAGCCTACTCGCAAGAG........................................................................................................................................................... 20 0 18 0.06 1 0 0 1 0
...........................................................................TTCAAAGCCTACTCGCAAGAGGT......................................................................................................................................................... 23 1 18 0.06 1 1 0 0 0
.......................................................................................................................AGACGACTTAAACGGCAGGGCTTTGCC......................................................................................................... 27 0 20 0.05 1 1 0 0 0
..............................................................................................................TCACCCCTAAGACGACTTAAACGGCA................................................................................................................... 26 2 20 0.05 1 1 0 0 0
.....................................................................................................................TAAGACGACTTAAACGGCAGGGCTTT............................................................................................................ 26 0 20 0.05 1 1 0 0 0
.................................................................................................................................................CAAAGTTATGGGTATTCAAT...................................................................................... 20 3 20 0.05 1 1 0 0 0
.......................................................................................................ACCTGCCAGACCCCTAAGACGACTTA.......................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................................................GCTCTAATTTTATGTATATATAT... 23 0 20 0.05 1 1 0 0 0
........................................................................................................................GACGACTTAAACGGCAGGGCTTTG........................................................................................................... 24 0 20 0.05 1 1 0 0 0
.......................................................................................................................ATACGACTTAAACGGCAGGGC............................................................................................................... 21 1 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................................GGCTCTAATTTTATGTATATATATGT. 26 0 20 0.05 1 1 0 0 0
...........................................................................................................GCCAGACCCCTAAGACGACTTAAACG...................................................................................................................... 26 0 20 0.05 1 1 0 0 0
...............................................................................................................................TAAACGGCAGGGCTTTTA.......................................................................................................... 18 2 20 0.05 1 1 0 0 0
..........................................................................................................TGCCAGACCCCTAAGACGACTTAAACGG..................................................................................................................... 28 0 20 0.05 1 1 0 0 0
..........................................................................................................TGCCAGACCCCTAAGACGACT............................................................................................................................ 21 0 20 0.05 1 1 0 0 0
........................................................................................................................GACGACTTAAACGGCAGGGC............................................................................................................... 20 0 20 0.05 1 1 0 0 0
.................................................................................................................CCCCTAAGACGACTTAAACGGCA................................................................................................................... 23 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................................GGCTCTAATTTTATGTATATATATG.. 25 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................................GGCTCTAATTTTATGTATATATATGTG 27 0 20 0.05 1 1 0 0 0
.......................................................................................................................AGACGACTTAAACGGCAGGGCTT............................................................................................................. 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................AGACGACTTAAACGGCAGGGCTTTGC.......................................................................................................... 26 0 20 0.05 1 1 0 0 0
.........................................................................................................................ACGACTTAAACGGCAGGGCTTTGCCAAA...................................................................................................... 28 0 20 0.05 1 1 0 0 0
.........................................................................................................................ACGACTTAAACGGCAGGGCTTTGCCAAT...................................................................................................... 28 1 20 0.05 1 0 0 1 0
...........................................................................................................GCCAGACCCCTAAGACGACTTAAACGG..................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.......................................................................................................................AGACGACTTAAACGGCAGGGC............................................................................................................... 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CTCTGGAGTTCGACAGATGACAGCTTCTTGTTTATTTATTTGTGTGTTCGTCTATGAGTCTGTCTGAACATGCTGTAGTTTCGGATGAGCGTTCTCCAGATTGTGGACGGTCTGGGGATTCTGCTGAATTTGCCGTCCCGAAACGGTTTTGTTACCCATAAGTTATTTATAATAATAATAATAAAAAGAAAAAAAAGAGTCAGGAGTGTTTAACTCACTCCAAACCGAGATTAAAATACATATATATACAC
*****************************************************************************.((((((...(((....)))........((((((......................))))))))))))(((......)))..................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
.......GTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 0 13 45.08 586 579 5 2 0 0
....GGAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 28 0 13 9.38 122 118 3 1 0 0
.....GAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 27 0 13 7.31 95 89 2 4 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 26 0 20 6.10 122 121 0 0 1 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 27 0 20 5.25 105 49 56 0 0 0
..............................................................TCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 24 0 14 3.71 52 40 12 0 0 0
...............................................................................................................................................................................................................GTTTAACTCACTCCAAACCGAGATTAA................. 27 0 20 3.70 74 73 1 0 0 0
.......GTTCGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 24 0 13 3.69 48 48 0 0 0 0
...................................................................................................................................GCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 28 0 20 3.55 71 70 1 0 0 0
......................................................................................................................................GTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 25 0 20 2.65 53 45 7 0 1 0
..................................................................................................................................................................................................................TAACTCACTCCAAACCGAGATTAA................. 24 0 20 2.50 50 30 19 1 0 0
..................................................................................................................................TGCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 29 0 20 2.45 49 39 9 1 0 0
...............................................................CTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 23 0 14 1.71 24 18 6 0 0 0
......AGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 26 0 13 1.69 22 22 0 0 0 0
.................................................................................................................................................................................................................TTAACTCACTCCAAACCGAGATTAA................. 25 0 20 1.20 24 0 22 1 1 0
....GGAGTTCGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 27 0 13 1.08 14 14 0 0 0 0
........TTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 24 0 14 0.93 13 10 2 1 0 0
.....GAGTTCGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 26 0 13 0.77 10 10 0 0 0 0
.......................................................................................................................................TCCCGAAACGGTTTTGTTACCCAT............................................................................................ 24 0 20 0.70 14 8 5 0 1 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCCA............................................................................................. 25 0 20 0.65 13 13 0 0 0 0
.............................................................GTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 25 0 13 0.54 7 7 0 0 0 0
...........................................................CTGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 27 0 13 0.54 7 4 3 0 0 0
............................................................TGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 26 0 13 0.46 6 6 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTGTTT.......................................................................................................................................................................................................................... 26 0 13 0.46 6 6 0 0 0 0
.........TCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 23 0 14 0.43 6 4 2 0 0 0
..........CGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 22 0 14 0.43 6 3 1 0 2 0
........................................................................................................GGACGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 25 0 20 0.40 8 7 1 0 0 0
........................................................................................................................................CCCGAAACGGTTTTGTTACCCAT............................................................................................ 23 0 20 0.35 7 7 0 0 0 0
..................................................................................................................................CGCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 29 1 20 0.35 7 4 3 0 0 0
...TGGAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 29 0 13 0.31 4 3 1 0 0 0
.........................................................................................................................................CCGAAACGGTTTTGTTACCCAT............................................................................................ 22 0 20 0.30 6 1 5 0 0 0
..............................................................CCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 24 1 14 0.29 4 0 4 0 0 0
........................................................................................................GGACGGTCTGGGGATTCTGCTGAATTT........................................................................................................................ 27 0 20 0.25 5 4 1 0 0 0
......................................................................................................................................GTCCCGAAACGGTTTTGTTACCCA............................................................................................. 24 0 20 0.25 5 5 0 0 0 0
................................................................................................................................................................................................................TTTAACTCACTCCAAACCGAGATTAA................. 26 0 20 0.25 5 4 1 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCCGT............................................................................................ 27 1 20 0.25 5 0 5 0 0 0
.....GAGTTCGACAGATGACAGCTTCTTG............................................................................................................................................................................................................................. 25 0 13 0.23 3 3 0 0 0 0
.......GTTCGACAGATGACATCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.23 3 3 0 0 0 0
................................................................TGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 22 0 14 0.21 3 2 0 0 1 0
.................................................................................................AGATTGTGGACGGTCTGGGGATTCT................................................................................................................................. 25 0 19 0.21 4 3 1 0 0 0
...............................................................................................................................................................................................................GTTTAACTCACTCCAAACCGAGAT.................... 24 0 20 0.20 4 4 0 0 0 0
........................................................................................................GGACGGTCTGGGGATTCTGCTGAATT......................................................................................................................... 26 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCCATC........................................................................................... 27 1 20 0.20 4 1 3 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCTAT............................................................................................ 26 1 20 0.20 4 2 2 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTA................................................................................................. 22 0 20 0.20 4 2 2 0 0 0
....CGAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 28 1 13 0.15 2 2 0 0 0 0
.......GTTCGACAGATGAGAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.15 2 2 0 0 0 0
...........................................................CCGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 27 1 13 0.15 2 1 1 0 0 0
.....GAGTTCGACAGATGACAGCTTCT............................................................................................................................................................................................................................... 23 0 13 0.15 2 2 0 0 0 0
..........................................................TCTGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 28 0 13 0.15 2 2 0 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCAAT............................................................................................ 27 1 20 0.15 3 0 3 0 0 0
......................................................................................................GTGGACGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCCGT............................................................................................ 26 1 20 0.15 3 0 3 0 0 0
...........................................................................................................CGGTCTGGGGATTCTGCTGAATTT........................................................................................................................ 24 0 20 0.15 3 0 3 0 0 0
..............................................................CCTGAACATGCTGTAGTTTCGGGT..................................................................................................................................................................... 24 2 14 0.14 2 0 2 0 0 0
............................................................CGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 26 1 14 0.14 2 2 0 0 0 0
............ACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 20 0 14 0.14 2 2 0 0 0 0
..........................................................................GTAGTTTCGGATGAGCGTTCTCCAGAT...................................................................................................................................................... 27 0 15 0.13 2 2 0 0 0 0
................................................................................................CAGATTGTGGACGGTCTGGGGATT................................................................................................................................... 24 0 19 0.11 2 0 0 1 1 0
.................................................................................................................................................................................................................TTAACTCACTCCAAACCGAGATCAA................. 25 1 20 0.10 2 0 2 0 0 0
........................................................................................................GGACGGTCTGGGGATTCTGCT.............................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTAC................................................................................................ 22 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTG.................................................................................................... 18 0 20 0.10 2 2 0 0 0 0
.....................................................................................................TGTGGACGGTCTGGGGATTCTGCT.............................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTG.................................................................................................... 19 0 20 0.10 2 1 1 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTA................................................................................................. 21 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................CAGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 27 1 20 0.10 2 0 2 0 0 0
.....................................................................................................................................CTTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 26 1 20 0.10 2 0 2 0 0 0
........................................................................................................GGACGGTCTGGGGATTCTGCTGAA........................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................TCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 28 1 20 0.10 2 2 0 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCCA............................................................................................. 26 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................................ACTCACTCCAAACCGAGATTAA................. 22 0 20 0.10 2 2 0 0 0 0
............................................................................................................GGTCTGGGGATTCTGCTGAATTT........................................................................................................................ 23 0 20 0.10 2 1 0 1 0 0
..................................................................................................................................TGCCGTCCCGAAACGGTTTTGTTACCAAT............................................................................................ 29 1 20 0.10 2 0 2 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCCATA........................................................................................... 27 0 20 0.10 2 2 0 0 0 0
....................................TATTTGTGTGTTCGTCTATGAGT................................................................................................................................................................................................ 23 0 12 0.08 1 1 0 0 0 0
......................................TTTGTGTGTTCGTCTATGAGTCT.............................................................................................................................................................................................. 23 0 12 0.08 1 1 0 0 0 0
..................................CTTATTTGTGTGTCCGTCTATGAGT................................................................................................................................................................................................ 25 2 12 0.08 1 1 0 0 0 0
...................................TTATTTGTGTGTTCGTCTATGAGTCT.............................................................................................................................................................................................. 26 0 12 0.08 1 1 0 0 0 0
...............................CTATTTATTTGTGTGTTCGTCTATGAGT................................................................................................................................................................................................ 28 1 12 0.08 1 1 0 0 0 0
......TGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
.....................................................ATGAGTCTGTCTGAACATGCTGTAGT............................................................................................................................................................................ 26 0 13 0.08 1 0 0 1 0 0
.........................................................CCCTGTCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 29 2 13 0.08 1 1 0 0 0 0
.....GAGTTCGACAGATGACAGCTTCTTGGT........................................................................................................................................................................................................................... 27 1 13 0.08 1 0 1 0 0 0
......GGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
.....GAGTTCGACAGATGACAGCTTCTTTTT........................................................................................................................................................................................................................... 27 1 13 0.08 1 1 0 0 0 0
.......GTTCTACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
..............................................................................................................................................ACGGTTTTGTTACCCATAAGTTATTT................................................................................... 26 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTT................................................................................................................................................................................................................................. 19 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTGC............................................................................................................................................................................................................................ 24 1 13 0.08 1 1 0 0 0 0
.....GAGTTCGACAGATGACAGCTTC................................................................................................................................................................................................................................ 22 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTT............................................................................................................................................................................................................................. 23 1 13 0.08 1 1 0 0 0 0
..CTGGAGTTCGACAGATGACAGCTTCTTG............................................................................................................................................................................................................................. 28 0 13 0.08 1 1 0 0 0 0
......AGTTCGACAGATGACAGCTTCTTGTTT.......................................................................................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0
.............................................................GTCTGAACATGCTGTAGTTTCGGA...................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGGCAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTTCTT.......................................................................................................................................................................................................................... 26 2 13 0.08 1 0 1 0 0 0
..CTGGAGTTCGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 29 0 13 0.08 1 1 0 0 0 0
.......GTTCGACGGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
....CGAGTTCGACAGAAGACAGCTTCTTGTT........................................................................................................................................................................................................................... 28 2 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGGCAGCTTCTTGT............................................................................................................................................................................................................................ 24 1 13 0.08 1 1 0 0 0 0
....GGAGTTCGACAGATGAGAGCTTCTTGTT........................................................................................................................................................................................................................... 28 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTTTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGGTGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGGCAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
....GGAGTTCGACAGATGACAGCTTCT............................................................................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTGTTA.......................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTT.............................................................................................................................................................................................................................. 22 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTGTC........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGAAAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
...................................................CTATGAGTCTGTCTGAACATGCTGTAGT............................................................................................................................................................................ 28 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACGGCTTCTTGTTT.......................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
.......GTTCGACATATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATAACAGCTTCTTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
....GGAGTTCGACAGATGACAGCTTCCTG............................................................................................................................................................................................................................. 26 1 13 0.08 1 0 1 0 0 0
.....AAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 27 1 13 0.08 1 1 0 0 0 0
......AGTTCGACAGATGACAGCT.................................................................................................................................................................................................................................. 19 0 13 0.08 1 1 0 0 0 0
....TGAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 28 1 13 0.08 1 0 1 0 0 0
.....GAGTTCTACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 27 1 13 0.08 1 1 0 0 0 0
.....TAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 27 1 13 0.08 1 1 0 0 0 0
...CCCAGTTCGACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 29 3 13 0.08 1 1 0 0 0 0
.....GAGTTCGACAGATGACAGCT.................................................................................................................................................................................................................................. 20 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCCTGTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTGGT........................................................................................................................................................................................................................... 25 1 13 0.08 1 0 1 0 0 0
......................................................TGAGTCTGTCTGAACATGCTGTAGTT........................................................................................................................................................................... 26 0 13 0.08 1 0 0 1 0 0
..CTGGAGTTCGACAGATGACAGCTTCT............................................................................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0
.......GTTCGACAGATGACAGCTTCTTTTT........................................................................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.................................................................GAACATGCTGTAGTTTCGGATGAGCGT............................................................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0
..........CGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 21 0 14 0.07 1 1 0 0 0 0
........TTCGACAGATGACAGCTTCTTGTTT.......................................................................................................................................................................................................................... 25 0 14 0.07 1 0 1 0 0 0
........TTCGACAGATGACAGCTTCTTCTT........................................................................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
...............................................................CTGAACATGCTGTAGTTTCGGGT..................................................................................................................................................................... 23 1 14 0.07 1 0 1 0 0 0
.........TCGATAGATGACAGCTTCTTGTTTGT........................................................................................................................................................................................................................ 26 2 14 0.07 1 0 1 0 0 0
...............................................TCGTCTATGAGTCTGTCTGAACAT.................................................................................................................................................................................... 24 0 14 0.07 1 1 0 0 0 0
..............................................................TCTGAACATGCTGTAGTTTCGCAT..................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
..........CGACAGATGACAGCTTCTTCTT........................................................................................................................................................................................................................... 22 1 14 0.07 1 0 1 0 0 0
..............................................................CCTGAACATGCTGTAGTTTCGCAT..................................................................................................................................................................... 24 2 14 0.07 1 0 1 0 0 0
................................................CGTCTATGAGTCTGTCTGAACATGC.................................................................................................................................................................................. 25 0 14 0.07 1 1 0 0 0 0
...............................................................CTGAACATGCTGTAGTTTCGGTT..................................................................................................................................................................... 23 1 14 0.07 1 0 1 0 0 0
..............................................................TCTGAACATGCTGTAGTTTCGGGT..................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
...............................................CCGTCTATGAGTCTGTCTGAACAT.................................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
..........CGACAGATGACAGCTTCTTGTTTATTT...................................................................................................................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0
..............................................................GCTGAACATGCTGTAGTTTCGGAT..................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
........TTCGACAGATGACAGCTTCTTGGT........................................................................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
............................................................CGTCTGAACATGCTGTAGTTTCGGAG..................................................................................................................................................................... 26 2 14 0.07 1 0 1 0 0 0
..............................................................TCTGAACATGCTGTAGTTTCGGA...................................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0
................................................................TGAACATGCTGTAGTTTCGG....................................................................................................................................................................... 20 0 14 0.07 1 1 0 0 0 0
...............................................................CTGAACATGCTGTAGTTTCGGA...................................................................................................................................................................... 22 0 14 0.07 1 1 0 0 0 0
.........TCGACAGATGACAGCTTCTTT............................................................................................................................................................................................................................. 21 1 14 0.07 1 0 1 0 0 0
...........GACAGATGACAGCTTCTTGTT........................................................................................................................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0
........TTCGACAGATGACCGCTTCTTGTT........................................................................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0
..........CGACAGATGACAGCTTCTTGTTTATT....................................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0
........TTCGACAGATGACAGCTTCTTGT............................................................................................................................................................................................................................ 23 0 14 0.07 1 1 0 0 0 0
.....................................................................ATGCTGTAGTTTCGGATGAGCGT............................................................................................................................................................... 23 0 15 0.07 1 1 0 0 0 0
......................................................................TGCTGTAGTTTCGGATGAGCGGT.............................................................................................................................................................. 23 1 15 0.07 1 0 1 0 0 0
.....................................................................ATGCTGTAGTTTCGGATGAGCGTTCTCC.......................................................................................................................................................... 28 0 15 0.07 1 1 0 0 0 0
..........CGACAGATGACAGCTTCTTGTC........................................................................................................................................................................................................................... 22 1 15 0.07 1 0 1 0 0 0
...................................................................CCATGCTGTAGTTTCGGATGAGCG................................................................................................................................................................ 24 1 15 0.07 1 0 0 0 1 0
.......................................................................................CGCGTTCTCCAGATTGTGGACGGTCT.......................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0
....................................................................................AAGAGCGTTCTCCAGATTGTGGACGGT............................................................................................................................................ 27 1 18 0.06 1 1 0 0 0 0
....................................................................................ATGAGCGTTCTCCAGATTGTGGACGGT............................................................................................................................................ 27 0 18 0.06 1 1 0 0 0 0
...................................................................................................ATTGTGGACGGTCTGGGGATTCTGCT.............................................................................................................................. 26 0 19 0.05 1 1 0 0 0 0
...............................................................................................CCAGATTGTGGACGGTCTGGGGATTCT................................................................................................................................. 27 0 19 0.05 1 0 1 0 0 0
................................................................................................CAGATTGTGGACGGTCTGGGGATTC.................................................................................................................................. 25 0 19 0.05 1 1 0 0 0 0
....................................................................................................TTGTGGACGGTCTGGGGATTCTGCT.............................................................................................................................. 25 0 19 0.05 1 0 0 0 0 1
................................................................................................AAGATTGTGGACGGTCTGGGGATT................................................................................................................................... 24 1 19 0.05 1 1 0 0 0 0
........................................................................................................................................CCCGAAACGGTATTGTTACCCAT............................................................................................ 23 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................TGCGGAACTCGCCGTCCCG............................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACC............................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.......................................................................................................TGGACGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CGAAACGGTTTTGTTACCCAT............................................................................................ 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................ACGGTCTGGGGATTCTGCTGAATT......................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
......................................................................................................................................GTCCCGAAACGGTTTTGTTACCAAT............................................................................................ 25 1 20 0.05 1 0 1 0 0 0
.........................................................................................................GACGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................................................................TCGCTCCAAACCGAGATTAAAATACAT.......... 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................AGTGTTTAACTCACTCCAAACCGAGAT.................... 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................GTCCCGAAACGGTTTTGTTAC................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................TCACTCCAAACCGAGATTAA................. 20 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................GTTTAACTCACTCCAAACCGAGATTGA................. 27 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................TTAACTCACTCCAAACCGAGAT.................... 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................CCCGAAACGGTTTTGTTACCCGT............................................................................................ 23 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................CTAACTCACTCCAAACCGAGATTAAAAT.............. 28 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................CTAACTCACTCCAAACCGAGATTAA................. 25 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................TGTTTAACTCACTCCAAACCGAGATTAA................. 28 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................GTTTAACTCACTCCAGACCGAGATTAA................. 27 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................GTCGCGAAACGGTTTTGTTACCCA............................................................................................. 24 1 20 0.05 1 1 0 0 0 0
...........................................................................................................CGGTCTGGGGATTCTGCTGAATT......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................GGACGGTCTGGGGAGTCTGCTGAATT......................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTATCCAT............................................................................................ 26 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................GTCCCGAAATGGTTTTGTTACCCAT............................................................................................ 25 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTAC................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTGTTGTTACCCAT............................................................................................ 26 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................CTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 25 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................CCCGAAACGGTTTTGCTAC................................................................................................ 19 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................AACTCACTCCAAACCGAGATTAA................. 23 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCTAT............................................................................................ 27 1 20 0.05 1 1 0 0 0 0
..........................................................................................................ACGGTCTGGGGATTCTGCTGAATTT........................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................CCCCAAACGGTTTTGTTACCCGT............................................................................................ 23 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TTAACTCACTCCAAACCGAGATTAAA................ 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................GCCGTCCCGAAACGGTTTTGTTACCCATT........................................................................................... 29 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTCGT................................................................................................... 20 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................GCCGTCCCGAAACTGTTTTGTTACCCAT............................................................................................ 28 1 20 0.05 1 1 0 0 0 0
..................................................................................................GATTGTGGACGGTCTGGGGATTCT................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TGCCGTCCCGAAACGGTTTTGTTACCCGT............................................................................................ 29 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................................TCCAAACCGAGATTAAAATACATA......... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CGTCCCGAGACGGTTTTGTTAC................................................................................................ 22 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................................CGTCCCGAAGCGGTTTTGTTACCCAT............................................................................................ 26 1 20 0.05 1 0 1 0 0 0
.....................................................................................................TGTGGACGGTCTGGGGATTCT................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................CGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................CCCGAAACGGTTTTGTTACCC.............................................................................................. 21 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................TAACTCACTCCAAACCGAGAT.................... 21 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................TTGCCGTCCCGAAACGGTTTTGTTACCCA............................................................................................. 29 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................GCTGAATTTGCCGTCCCGAAACGGTT....................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................CCGTCCCGAAACAGTTTTGTTACCCAT............................................................................................ 27 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................CCCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 29 2 20 0.05 1 0 1 0 0 0
..................................................................................................................................GGCCGTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 29 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................GTTTAACTCACTCCAAACCGAGATTT.................. 26 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................GTGTTTAACTCACTCCAAACCGAGATT................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................CCCTCCCGAAACGGTTTTGTTACCCAT............................................................................................ 27 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................................CGTCCCGAAAAGGTTTTGTTACCCAT............................................................................................ 26 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCAAACCGTGGTTAAAAT.............. 18 2 20 0.05 1 0 1 0 0 0
....................................................................................................................................CCGTCCCGAAACGGTTTTGTTACCGA............................................................................................. 26 1 20 0.05 1 0 1 0 0 0
..........................................................................................................ACGGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TGCCGTCCCGAAACGGTTTTGTTACCCA............................................................................................. 28 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................GCCGTCCCGAAACGGTTTTGTTAC................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
............................................................................................................GGTCTGGGGATTCTGCTGAATT......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
............................................................................................................GGTCTGGGGATTCTGCTGAAT.......................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................GTCCCGAAACGGTTTTGTTACCTAT............................................................................................ 25 1 20 0.05 1 0 1 0 0 0
.....................................................................................................TGTGGACGGTCTGGGGATTCTGCTGA............................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................TAACTCACTCCAAACCGAGATTAAC................ 25 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CGTCCCGAAACGGTTTTGTTACCAAT............................................................................................ 26 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TTAACTCACTCCAAACCG........................ 18 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCAAACCGAGATTAAAATACATATATAT.... 28 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................AAAAAGAGTCAGGAGTGTTTAACTCACT................................ 28 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:8642247-8642497 + dmo_707 GAGACCTCAAGCTGT-CTACTGTCGAAGAACAAAT-AAATA------------AACACACAAGCAGATACTCAGACAGACTTGTACGACATCAAAGCCTACTCGCAAGAGGTCTAACACCTGCCAGACCCCTAAGACGACTTAAACGGCAGGGCTTTGCC-----AAAA------CAATGGGTATTC------------A-A--TAAATATTATT-AT----TATTATTTT-----TCTTTTTTTTCTCAGTCCT-----------------CACAAATTGAG-----TGAGGTTTGGCT----CTAATT-TTA-TGTA--TAT-------------ATATGTG
droVir3 scaffold_12967:100738-100973 + AAGACCTCAAAGTGC-ATACAGTCGAAGAACAGAT-TGGAA------------GGCGCACAAGCAGATAAAGCGACAAATTGCTGAGACACCGCAGCCTGCTCGCAAGAGGACTACTCCCTGCCCAGCCTCTAAGGCGACTTAAACGGCAAGGTTTTGCC-----AAGA------CGATTGGGCGCC------------A-G--AAAGACC-ACC-CG------------------------CATTG-AAATCCT-----------------CATACTACT-TT-A--TGGGGTTCGGCT----CTAAATAACA-TCTC--TAT-------------CCGTGTG
droGri2 scaffold_14928:28536-28763 - ACGACTTCGGATTGC-TGACAGTCAGTCAACAACC-ATGTCAACCCTTTGGCCTGCTCACTTG-------------------------GGTCGAATACAACACGCAGGAGGT-------------------TGAAGCGCCTCCA---------C-----ACCAGCGACCTCTGGACTGTAGGGCGTTAAATAAGTATGCC-A--CAAATGTAATT-TT----TGATGTTAT-----TTATTAACTGCTAAAACCTGTCC-------------CATGTTTA-TGT-T--ATAG-----ATT----ATAATT--CACTGTT--ATT-------------ATTCATT
droWil2 scf2_1100000004822:2966616-2966853 - GTGACCTCAACCTGC-ACACAGTGGAGGAACAGAT-CGGTA------------GACACACCAGCAGATATAGCGACCGGCTTAATAGACACCGCAGTATCCTCGCAAGACGATTACTACCTGCCAGGCCTCTTAGACGGCTAAAAAGAAAGGGCTTCGCC-----AAAA------ATATTAGCTAAC------------C-A--ACA------------------TCAACA---A---TAATATTTA-TAGTCCT-----------------CTTGGGTATACC-A-ATGAGGTTTGGTC----CTTTTTAT---AACA--TCT-------------ACTTGTG
dp5 Unknown_group_42:25616-25864 + GGGATCTAAGTCTGC-ATACAGTGGAGGAACAGAT-TTGAA------------GGCACATCAGCAGATACAGTGACAGGCTGATTAGGCGCCTAAGTATGCTCGCGAGACGTTTAGTACCTGCCAGTCCTTTGAGGCGATTGAAGAAATTGGGTTTTGCC-----ACCA------TAATAGGTCAAC------------T-C--TAAGTTTCCCT-CC----CAATATTAT---A-----CCTTTTATAAGTCCT-----------------CTTGCATTAAGC-A--ATAGGTGTGGTC----TCCTCAAT---ATTA--TTT-------------ACCTGTG
droPer2 scaffold_182:24033-24289 - GGGATCTAAATCTGC-ATACAGTGGAGGAGCAGAT-TTGAA------------GGCACATCAACAGATACAGTGACAGGCTGATTAGGCGCCTAAGTATGCTCGCGAGACGTTTACTACCTGCCAGTCCTTTGAGGCGATTGAAGAAATTGGGTTTTGCC-----ACCA------TTATAGGTCAAC------------T-C--TAAGTTTCCCT-CC----CAATATTATAATATTATATCTTTTATAAGTCCT-----------------CTTGCATTAAGC-A--ATAGATTGGGTC----TCCTCAAT---ATTA--TTT-------------ACCTGTG
droAna3 scaffold_12913:195298-195533 + GAGACCTTAATATAC-ATACTGTGGAAGAACAGAT-AAATA------------GACACACAAGCCGTTACAGCGACAGACTTCTAAGACATCGCAGCCTACTGGCTAGAAATTTACTTCCAGCTAGACCATTGAGGCGTCTTAAACGTCTAGGTTTTGCT-----AAGA------TACTTAATTAGA------------A-C------------------------ATAAA---T----CAGACATTGAAATCCT-----------------TATATGTATTAT-A-TTTTGGTTAGGCT----TACATT-GTATATAC--ATT-------------TCATGTG
droBip1 scf7180000396712:266687-266926 + AAGATTTGAAGCTAC-ATACTGTAGAAGAGCAGAT-TGGAA------------GGCATACAAGCCGATATAGTGATAGACTCTTAAGACACCGCAGCCTACTTGCTAGAAACCTACTTCCAGCTAGACCTTTGAGACGCCTTAAACGACAAGGCTTTGCC-----AAAA------CAATTAGGAGCC------------A-A--TAAGGATGCCA-T---ACC-----------------TATGATG-TAATCCT-----------------CATATTTGT----A-TTGAGGTTTGGTT----TATTTT-TCATTTTC--TAT-------------CCATGTG
droKik1 scf7180000302366:356552-356798 - GAGAGCTACGCGTCCCCTGCTGTGGGAGACGCCAT-TAATA------------CCATTGCTGCCCGACACCGAGCCAGGCTGACTGGACATCCCAACCCGCTGGCCAGAGCGCTGCCTACTACGAGAGGAAGACGTCGACTGAAGAGGACCACTATCCGG-----GAGC------TGCCAACCCGGCAAATAAAC----TGATTTAA---------------------------A----TTGTATTGTTATTGTT--------CC-------TTTATCTCTAC-TACATGT----TAATTGTTATTTGA---TACTAGT--AGA-------------ATTGTTA
droFic1 scf7180000453838:226702-226937 + GAGACCTAAATCTAC-ACACTGTGGAAGAACAGAT-TGGGA------------GACACACAAGCCGATACCGAGATAGATTAGGAAGACACCGCAGCTTACTGGCTAGGAATCTACTCCCAGCGAGACCTTTGAGGCGTCTCAAAAGGCAAGGCTTTGCC-----AAGA------CGATAAGGAATC------------A-A--TAAGAAAAT-A-------------------------CTATATA-TAATCCT-----------------CTTC---TTAAT-G-CTGAGGTTTGGTT----ACTTTTCTCATTGGT--GAC-------------ACCTGTG
droEle1 scf7180000490601:2520-2738 - ACGACCTGCGACTTG-TTCCTGTGGGCGACCTCCT-CAACC------------AGCACAGCCAACGGTACTCGGACAGGCTAAGGAACCATCCAAACCCACTGGCTAGCAGGCTGACTGACCCGCAATCTCTAAGAAGATTAAAGAGATTCCAC-----C-----CCAG------CGATCTGTCTTC------------C-C--GT-----GTTG-TA----CAATA---------------------ATATT-------------GTATTCCTTGTTAACA-------AT-------TT----GTAAAT-ATG-TGTA--AAT-------------ATATGT-
droRho1 scf7180000777187:4303-4538 + GGGACCTAAATATCC-AAACTGTGGAGCAGCAGAT-TGGCC------------TACACACCAGCAGGTAGAGAGACAGACTTCTTAGTCATCGGAACCGACTCGCAAGAAGACTCCTGCCAGCTAGACCGCTCAGACGGCTCAAGAGACTTGGGTTCGCT-----AAAA------CCATCAGACATC------------C-A--TAAATATGATC-TC----CAATA---------------------AAATCCA-----------------TTTGCTGAAGGC-A--TGAGGTTTGGTT----CAAATCCA---TATA--CAA-------------AACTATA
droBia1 scf7180000302422:2886047-2886318 - ATGACCTAAACCTGA-GTCTTGTTGAAGACCAAAT-ATCGT------------TCTTCTCAAGCAGGTACAACGACCGTCTAACTGCCCACCGTAATCGTCTAGCCCGGAGATTACAGGGGGCTATCCCAATTCGCAGGCTCAAAAGAAGACATTTTGGG-----CTGC------TCCTAAGAGACT------------A-A--TATGAATATAT-T---ATT-ACTTGAA---A----CT-AGTCGT--AATTTGATCTACTCCTATATACCAAGTTGAAA-------AC----TAATT----ATAATTTATAATTAA--GAGATTATTTACTTAAGAAAACA
droTak1 scf7180000415131:227632-227736 - GAGATCTCAAAATTC-CAAAGATAGGCGATGTCATACGAAT------------AGCACGCAGAAAAGCACTATAATCGCCTTGGCTCTCATCCAAACTCCCTAGCGAGGAGACTAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408927:25592-25823 + GAGATCTGAAATTGT-TCACTGTGGAGGAACAAAT-TGGTA------------GAAACACAAGCAGATACAGTGACAGACTAATAAGACATCGCAGCCCACTCGCTAGGAAACTACTGCCGGCTAGACCCCTGAGACGTCTGAAACGGAAAGGT-TTGCC-----AAAA------CAATTAGAAGAC------------A-A--TCAGACATT-TTC-----------------------ACATTTGTAAATTTT-----------------TT-----AAAGT-A-ATTCGATTTGGTT----TTATATTAC---ACA--CA--------------CAATGTG
dm3 chr2R:2194704-2194955 - GTGATCTGAATCTTC-ATACAGTGGAAGAGCAGAT-CTCCA------------GGCACACCAGCAGATATAGTGATAGACTAAGACGACACCACAGTATACTTGCTAGACGCTTACTCCCTGCTAGGCCTCTAAGGAGATTAAAAAGGAAGGGCTTCGCC-----AAAA------CACTTGGACAAC------------C-C--TAAATACCCCCTCGAA----ATATGAG---A----CATAGTTGTAAGTCCT-----------------CACATGATTAGT-G--AGAGGTTTGGTT----TTATCTTTT---ATAT-GTT-------------AATTGCG
droSim2 node_13244:837-1085 + AAGACCTCAATATTC-ACACAGTTGAGACACAAAT-TGGGA------------GACATACAAGTCGATATAGTGACAGATTACTAAGCCATAGCAGTCTTCTTGCAAGACGTCTCATCCCCGCTCGACCTCTGAGACGACTCAAACGGCAAGGCTTCGCC-----AAGA------TAATTGGGCAAC------------A-G--TAAAAACTCTT-C---ATT-----------------TATGTTCCTACTTCA-----------------CTTATTTTAAT-TTTATAGTGTTTGGTA----ATTCC---TA---AG--AAT----ATTTATCCACCCTGTG
droSec2 scaffold_790:7399-7649 - GTGATCTGAATCTTC-ATACAGTGGAAGAGCAGAT-CTCCA------------GGCACACCAGCAGATATAGTGATAGAGTTAGACGACACCACAGTATACTTGCTAGACGCTTACTCCCTGCTAGGCCTCTAAGGAGATTAAAAAGGAAGGGTTTCGCC-----AAAA------CACTTAAACAAC------------C-C--TAAAGACCCCT-CGAA----ATATGAG---A----CATAGTTGTAAGTCCT-----------------CACATGCTTAGT-G--CGAGGTTTGGTT----TTATCATTT---ATCT-GTT-------------AATTGCG
droYak3 X:5022365-5022617 - GGGACCTGAATCTGC-ATACAGTAGAAGAGCAGAT-CTCAA------------GGCACAAGAGCAGATACAGTGATAGGCTTAAAACACACCACAGCATGCTGGCAAAACGCCTACTCCCTGCCAGGCCTCTAAGAAGACTCAAAAGAAAGGGCTTTGCC-----AAAA------CAATTGGACAGC------------T-T--TAAAGACCCCCTCGAT----GTTTGAG---A----TTTTGTTGTTAGTCCT-----------------CCCGCGATAAGT-G--AGAGATTTGGTT----ACATTATTT---ATATGTTT-------------AATTGCA
droEre2 scaffold_1581:516-766 + GGGACCTTAATCTGC-ATACAGTGGAAGAACAGAT-CTCAA------------GGCACACAAGCAGATACAGTGATAGGCTTAAAAGACACCACAGCATGCTAGCAAGACGCCTACTCCCTGCCAGGCCTCTAAGAAGGCTTAAAAGAAAGGGCTTTGCC-----AAAA------CAATTGGACAGC------------T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----CTATGTTGTTAGTCTT-----------------CCCACGATAAGT-G--AGAAGTTTGGTT----ATATTATA---TATG--TTT-------------ATATGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAGACCTCAAGCTGT-CTACTGTCGAAGAACAAAT-AAATA------------AACACACAAGCAGATACTCAGACAGACTTGTACGACATCAAAGCCTACTCGCAAGAGGTCTAACACCTGCCAGACCCCTAAGACGACTTAAACGGCAGGGCTTTGCC-----AAAA------CAATGGGTATTC------------A-A--TAAATATTATT-AT----TATTATTTT-----TCTTTTTTTTCTCAGTCCT-----------------CACAAATTGAG-----TGAGGTTTGGCT----CTAATT-TTA-TGTA--TAT-------------ATATGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................CGAAGAACAAAT-AAATA------------AACACACAAG.........................................................................................................................................................................................................................................................................................27120.759800010
................................................................................................................................................................................................................................TTATTTT-----TCTTTTTTTTCTCAGTCCT-----------------C.......................................................................2730.331100000
..........................................................................................TCAAAGCCTACTCGCAAGAGGTC.......................................................................................................................................................................................................................................23180.336410001
...................................................................TACTCAGACAGACTTGTACGACA..............................................................................................................................................................................................................................................................23130.314400000
.......................CGAAGAACAAAT-AAATA------------AACACACA...........................................................................................................................................................................................................................................................................................25130.314400000
........................................................................................................................................................................A------CAATGGGTATTC------------A-A--TAAATATTAT..................................................................................................................................25120.253300000
........................................................................................................................................................................A------CAATGGGTATTC------------A-A--TAAATATTATT-................................................................................................................................26120.253300000
.......................CGAAGAACAAAT-AAATA------------AACACACAAGC........................................................................................................................................................................................................................................................................................28120.253300000
........................................................................................................................................................................A------CAATGGGTATTC------------A-A--TAAATATT....................................................................................................................................23120.253300000
.......................CGAAGAACAAAT-AAATA------------AACACAC............................................................................................................................................................................................................................................................................................24130.233200010
..........................................................................................TCAAAGCCTACTCGCAAGAGGTCTAAC...................................................................................................................................................................................................................................27180.224400000
..........................................................................................TCAAAGCCTACTCGCAAGAGGTCTAACA..................................................................................................................................................................................................................................28180.173300000
........................................................................................................................................................................A------CAATGGGTATTC------------A-A--TAAATATTA...................................................................................................................................24120.172200000
.......................CGAAGAACAAAT-AAATA------------AACACACAA..........................................................................................................................................................................................................................................................................................26120.172200000
..........................................................................................TCAAAGCCTACTCGCAAGAGGTCT......................................................................................................................................................................................................................................24180.173200010
........................................................................................................................TGCCAGACCCCTAAGACGACTTAAAC......................................................................................................................................................................................................26200.153300000
........................................................................................................................TGCCAGACCCCTAAGACGACTTAAACGGC...................................................................................................................................................................................................29200.153300000
..........................................................................................TCAAAGCCTACTCGCAAGAGGTCTAA....................................................................................................................................................................................................................................26180.112200000
...........................................................................................CAAAGCCTACTCGCAAGAGGTCT......................................................................................................................................................................................................................................23180.112200000
..............................................................................................................................ACCCCTAAGACGACTTAAACGGCAGG................................................................................................................................................................................................26200.102200000
..............................................................................................................................ACCCCTAAGACGACTTAAACGGCA..................................................................................................................................................................................................24200.102200000
........................................................................................................................................................................A------CAATGGGTATTC------------A-A--TAAATATTATT-AT----..........................................................................................................................28120.081000010
........................GAAGAACAAAT-AAATA------------AACACACAAGC........................................................................................................................................................................................................................................................................................27120.081100000
.....................................................................................................................................................................AAAA------CAATGGGTATTC------------A-A--TAAATATTA...................................................................................................................................27120.081100000
.......................CGAAGAACAAAT-AAATA------------AACACACAAGCA.......................................................................................................................................................................................................................................................................................29120.081100000
......................TCGAAGAACAAAT-AAATA------------AACACACAAGC........................................................................................................................................................................................................................................................................................29120.081100000
.................................................................................................................................................................................ATGGGTATTC------------A-A--TAAATATTATT-AT----..........................................................................................................................25120.081000010
...............................................................................................................................................................................CAATGGGTATTC------------A-A--TAAATATTATT-................................................................................................................................25120.081100000
...................................................................TACTCAGACAGACTTGTACGACATCAA..........................................................................................................................................................................................................................................................27130.081100000
.......................CGAAGAACAAAT-AAATA------------AACAC..............................................................................................................................................................................................................................................................................................22130.081100000
..................................................................ATACTCAGACAGACTTGT....................................................................................................................................................................................................................................................................18140.071000010
..........................AGAACAAAT-AAATA------------AACAC..............................................................................................................................................................................................................................................................................................19150.071100000
...............................................................................................................................................................................................................................................TTTTTTTCTCAGTCCT-----------------CACAAATTG...............................................................25170.061100000
....................................................................................................CTCGCAAGAGGTCTAACACCTGC.............................................................................................................................................................................................................................23180.061100000
..........................................................................................TCAAAGCCTACTCGCAAGAGG.........................................................................................................................................................................................................................................21180.061100000
..........................................................................................TCAAAGCCTACTCGCAAGAGGT........................................................................................................................................................................................................................................22180.061100000
................................................................................................CCTACTCGCAAGAGGTCTAACACCTGCCC...........................................................................................................................................................................................................................29180.061100000
..........................................................................................TCAAAGCCTACTCGCAAGAG..........................................................................................................................................................................................................................................20180.061000001
.....................................................................................................................................AGACGACTTAAACGGCAGGGCTTTGCC-----...................................................................................................................................................................................27200.051100000
...................................................................................................................................TAAGACGACTTAAACGGCAGGGCTTT...........................................................................................................................................................................................26200.051100000
.....................................................................................................................ACCTGCCAGACCCCTAAGACGACTTA.........................................................................................................................................................................................................26200.051100000
.........................................................................................................................................................................................................................................................................................................GCT----CTAATT-TTA-TGTA--TAT-------------ATAT...23200.051100000
......................................................................................................................................GACGACTTAAACGGCAGGGCTTTG..........................................................................................................................................................................................24200.051100000
........................................................................................................................................................................................................................................................................................................GGCT----CTAATT-TTA-TGTA--TAT-------------ATATGT.26200.051100000
.........................................................................................................................GCCAGACCCCTAAGACGACTTAAACG.....................................................................................................................................................................................................26200.051100000
.............................................................................................................................................TAAACGGCAGGGCTTTTA.........................................................................................................................................................................................18200.051100000
........................................................................................................................TGCCAGACCCCTAAGACGACTTAAACGG....................................................................................................................................................................................................28200.051100000
........................................................................................................................TGCCAGACCCCTAAGACGACT...........................................................................................................................................................................................................21200.051100000
......................................................................................................................................GACGACTTAAACGGCAGGGC..............................................................................................................................................................................................20200.051100000
...............................................................................................................................CCCCTAAGACGACTTAAACGGCA..................................................................................................................................................................................................23200.051100000
........................................................................................................................................................................................................................................................................................................GGCT----CTAATT-TTA-TGTA--TAT-------------ATATG..25200.051100000
........................................................................................................................................................................................................................................................................................................GGCT----CTAATT-TTA-TGTA--TAT-------------ATATGTG27200.051100000
.....................................................................................................................................AGACGACTTAAACGGCAGGGCTT............................................................................................................................................................................................23200.051100000
.....................................................................................................................................AGACGACTTAAACGGCAGGGCTTTGC.........................................................................................................................................................................................26200.051100000
.......................................................................................................................................ACGACTTAAACGGCAGGGCTTTGCC-----AAA................................................................................................................................................................................28200.051100000
.......................................................................................................................................ACGACTTAAACGGCAGGGCTTTGCC-----AAT................................................................................................................................................................................28200.051000001
.........................................................................................................................GCCAGACCCCTAAGACGACTTAAACGG....................................................................................................................................................................................................27200.051100000
.....................................................................................................................................AGACGACTTAAACGGCAGGGC..............................................................................................................................................................................................21200.051100000
droVir3
AAGACCTCAAAGTGC-ATACAGTCGAAGAACAGAT-TGGAA------------GGCGCACAAGCAGATAAAGCGACAAATTGCTGAGACACCGCAGCCTGCTCGCAAGAGGACTACTCCCTGCCCAGCCTCTAAGGCGACTTAAACGGCAAGGTTTTGCC-----AAGA------CGATTGGGCGCC------------A-G--AAAGACC-ACC-CG------------------------CATTG-AAATCCT-----------------CATACTACT-TT-A--TGGGGTTCGGCT----CTAAATAACA-TCTC--TAT-------------CCGTGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................TT-A--TGGGGTTCGGCT----CTAA....................................1950.402000002000000000000000000000000000000000000000000000000000000000
....................AGTCGAAGAACAGAT-TGGAA------------GG.................................................................................................................................................................................................................................................................................................2230.331000010000000000000000000000000000000000000000000000000000000000
....................AGTCGAAGAACAGAT-TGGAA------------TTT................................................................................................................................................................................................................................................................................................2330.331000000000000010000000000000000000000000000000000000000000000000
.....................................................................................AGACACCGCAGCCTGCTCGT...............................................................................................................................................................................................................................................2030.331000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................TTGCC-----AAGA------CGATTGGGCGCC------------.................................................................................................................................................2140.251000000000000000010000000000000000000000000000000000000000000000
............................................................................................GCAGCCTGCTCGCAAGAGGACTACTC..................................................................................................................................................................................................................................2650.201001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTTTGCC-----AAGA------CGATTGGGCG...............................................................................................................................................................2150.201000000000000000000000000000000000000001000000000000000000000000
droGri2
ACGACTTCGGATTGC-TGACAGTCAGTCAACAACC-ATGTCAACCCTTTGGCCTGCTCACTTG-------------------------GGTCGAATACAACACGCAGGAGGT-------------------TGAAGCGCCTCCA---------C-----ACCAGCGACCTCTGGACTGTAGGGCGTTAAATAAGTATGCC-A--CAAATGTAATT-TT----TGATGTTAT-----TTATTAACTGCTAAAACCTGTCC-------------CATGTTTA-TGT-T--ATAG-----ATT----ATAATT--CACTGTT--ATT-------------ATTCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTGACCTCAACCTGC-ACACAGTGGAGGAACAGAT-CGGTA------------GACACACCAGCAGATATAGCGACCGGCTTAATAGACACCGCAGTATCCTCGCAAGACGATTACTACCTGCCAGGCCTCTTAGACGGCTAAAAAGAAAGGGCTTCGCC-----AAAA------ATATTAGCTAAC------------C-A--ACA------------------TCAACA---A---TAATATTTA-TAGTCCT-----------------CTTGGGTATACC-A-ATGAGGTTTGGTC----CTTTTTAT---AACA--TCT-------------ACTTGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................A------------------TCAACA---A---TAATATTTA-TAGTCCT-----------------CT......................................................................2640.25101000
...................................................................TATAGCGACCGGCTTAATAGACACCGCA.........................................................................................................................................................................................................................................................2870.14101000
..................................................................................................................................................................................................................................................................................TGGGTATACC-A-ATGAGGTTTGGTC----CT......................................26110.09100010
................................................................................................................................................................................................................................................................................CTTGGGTATACC-A-ATGAGGTTTGG..............................................24130.08101000
dp5
GGGATCTAAGTCTGC-ATACAGTGGAGGAACAGAT-TTGAA------------GGCACATCAGCAGATACAGTGACAGGCTGATTAGGCGCCTAAGTATGCTCGCGAGACGTTTAGTACCTGCCAGTCCTTTGAGGCGATTGAAGAAATTGGGTTTTGCC-----ACCA------TAATAGGTCAAC------------T-C--TAAGTTTCCCT-CC----CAATATTAT---A-----CCTTTTATAAGTCCT-----------------CTTGCATTAAGC-A--ATAGGTGTGGTC----TCCTCAAT---ATTA--TTT-------------ACCTGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GC-ATACAGTGGAGGAACAGAT-TTG.................................................................................................................................................................................................................................................................................................................2413.0030200001000
......................................................................................................................................................................................TCAAC------------T-C--TAAGTTTCCCT-CC----CAATAT....................................................................................................................2611.0010100000000
.............................................................AGCAGATACAGTGACAGGCTGAT....................................................................................................................................................................................................................................................................2341.0040400000000
......................................................................................................................................................................................TCAAC------------T-C--TAAGTTTCCCT-CC----CAAT......................................................................................................................2411.0010100000000
......................................................................................................................................................................................TCAAC------------T-C--TAAGTTTCCCT-CC----C.........................................................................................................................2111.0010100000000
...........................................................TCAGCAGATACAGTGACAGGCT.......................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................TGCTCGCGAGACGTTTAGTACCTG..............................................................................................................................................................................................................................2411.0010100000000
.............................................................AGCAGATACAGTGACAGGCT.......................................................................................................................................................................................................................................................................20130.6280600200000
.............................................................AGCAGATACAGTGACAGGCTGATT...................................................................................................................................................................................................................................................................2440.5020200000000
.........................................................................................................................................................................................AC------------T-C--TAAGTTTCCCT-CC----CAATATT...................................................................................................................24100.4040400000000
.............................................................AGCAGATACAGTGACAGGC........................................................................................................................................................................................................................................................................19130.3140300100000
.............................................................AGCAGATACAGTGACAGGCTG......................................................................................................................................................................................................................................................................2140.2510100000000
.............................................................AGCAGATACAGTGACAGGCTGA.....................................................................................................................................................................................................................................................................2240.2510100000000
.........................................................................................................................................................................................AC------------T-C--TAAGTTTCCCT-CC----CAATAT....................................................................................................................23100.2020200000000
.............................................................AGCAGATACAGTGACAGG.........................................................................................................................................................................................................................................................................18130.1520200000000
.........................................................................................................................................................................................................C--TAAGTTTCCCT-CC----CAATATTA..................................................................................................................22100.1010100000000
.......................................................................................................................................................................................CAAC------------T-C--TAAGTTTCCCT-CC----CA........................................................................................................................21100.1010100000000
.......................................................................................................................................................................................CAAC------------T-C--TAAGTTTCCCT-CC----CAAT......................................................................................................................23100.1010100000000
..........................................................................................................................................................................................C------------T-C--TAAGTTTCCCT-CC----CAATATTA..................................................................................................................24100.1010100000000
............................................................CAGCAGATACAGTGACAGGCT.......................................................................................................................................................................................................................................................................21120.0810100000000
............................................................CAGCAGATACAGTGACAGGC........................................................................................................................................................................................................................................................................20120.0810100000000
..............................................................GCAGATACAGTGACAGGCT.......................................................................................................................................................................................................................................................................19130.0810100000000
.....................................................................................................................................................TGGGTTTTGCC-----ACCA------TGCG.....................................................................................................................................................................19200.0510000100000
droPer2
GGGATCTAAATCTGC-ATACAGTGGAGGAGCAGAT-TTGAA------------GGCACATCAACAGATACAGTGACAGGCTGATTAGGCGCCTAAGTATGCTCGCGAGACGTTTACTACCTGCCAGTCCTTTGAGGCGATTGAAGAAATTGGGTTTTGCC-----ACCA------TTATAGGTCAAC------------T-C--TAAGTTTCCCT-CC----CAATATTATAATATTATATCTTTTATAAGTCCT-----------------CTTGCATTAAGC-A--ATAGATTGGGTC----TCCTCAAT---ATTA--TTT-------------ACCTGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................TATGCTCGCGAGACGTTTACTACCTG..............................................................................................................................................................................................................................2620.501010000
.....................................................................................................................ACCTGCCAGTCCTTTGAGGCGAT............................................................................................................................................................................................................2320.501010000
............................................................................................................................................TGAAGAAATTGGGTTTTGCC-----ACCA------TTA......................................................................................................................................................................2720.501010000
..................................................................................................................................................................................TAGGTCAAC------------T-C--TAAGTTTCCCT-CC----CAA.......................................................................................................................2740.251010000
............................................................................................................................................................................................................TAAGTTTCCCT-CC----CAATATTATAATAT............................................................................................................27200.153030000
............................................................................................................................................................................................................TAAGTTTCCCT-CC----CAATATTATAA...............................................................................................................24200.051010000
droAna3
GAGACCTTAATATAC-ATACTGTGGAAGAACAGAT-AAATA------------GACACACAAGCCGTTACAGCGACAGACTTCTAAGACATCGCAGCCTACTGGCTAGAAATTTACTTCCAGCTAGACCATTGAGGCGTCTTAAACGTCTAGGTTTTGCT-----AAGA------TACTTAATTAGA------------A-C------------------------ATAAA---T----CAGACATTGAAATCCT-----------------TATATGTATTAT-A-TTTTGGTTAGGCT----TACATT-GTATATAC--ATT-------------TCATGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................T-AAATA------------GACACACAAGCCGTTACAGC...............................................................................................................................................................................................................................................................................26111.18133100000
................................................................................TTCTAAGACATCGCAGCCTACTGGC...............................................................................................................................................................................................................................................2571.148440000
.............................................................................GACTTCTAAGACATCGCAGCCTACTGGC...............................................................................................................................................................................................................................................2860.503120000
...................................................................................TAAGACATCGCAGCCTACTGGCTAGA...........................................................................................................................................................................................................................................2670.433030000
.......................................TA------------GACACACAAGCCGTTACAGCGACA...........................................................................................................................................................................................................................................................................26100.404310000
.................................................................................................................TACTTCCAGCTAGACCATTGAGGCGTC............................................................................................................................................................................................................27110.364310000
.............................................................................GACTTCTAAGACATCGCAGCCTACT..................................................................................................................................................................................................................................................2560.332200000
.............................................................................GACTTCTAAGACATCGCAGCCTACTGG................................................................................................................................................................................................................................................2760.332200000
.....................................AATA------------GACACACAAGCCGTTACAGCGACA...........................................................................................................................................................................................................................................................................28100.303300000
....................................AAATA------------GACACACAAGCCGTTACAGCGAC............................................................................................................................................................................................................................................................................28100.202020000
.............................ACAGAT-AAATA------------GACACACAAGCC.......................................................................................................................................................................................................................................................................................23100.202020000
.....................................................................................................................TCCAGCTAGACCATTGAGGCGTCTTA.........................................................................................................................................................................................................26100.202000020
..................................T-AAATA------------GACACACAAGCCGTTACAGCG..............................................................................................................................................................................................................................................................................27110.182200000
.................................................................................................................TACTTCCAGCTAGACCATTGAGGCG..............................................................................................................................................................................................................25110.182200000
...............................................................CCGTTACAGCGACAGACTTCTAAGACA..............................................................................................................................................................................................................................................................2760.171100000
.....................................................................CAGCGACAGACTTCTAAGACATCGC..........................................................................................................................................................................................................................................................2560.171010000
...............................................................................................................TTTACTTCCAGCTAGACCATTGAGGC...............................................................................................................................................................................................................26120.172020000
...................................................................TACAGCGACAGACTTCTAAGACATCG...........................................................................................................................................................................................................................................................2660.171100000
.........................................................................GACAGACTTCTAAGACATCGCAGCCT.....................................................................................................................................................................................................................................................2660.171100000
...............................................................................CTTCTAAGACATCGCAGCCTACTGGC...............................................................................................................................................................................................................................................2660.171010000
...........................................................................CAGACTTCTAAGACATCGCAGCC......................................................................................................................................................................................................................................................2360.171010000
..............................................................GCCGTTACAGCGACAGACTTCTAAGACA..............................................................................................................................................................................................................................................................2860.171100000
.........................................................................GACAGACTTCTAAGACATCGCAGCCTAC...................................................................................................................................................................................................................................................2860.171100000
..............................................................................ACTTCTAAGACATCGCAGCCTACTGGC...............................................................................................................................................................................................................................................2760.171100000
...................................................................TACAGCGACAGACTTCTAAGACATC............................................................................................................................................................................................................................................................2560.171010000
.............................................................................GACTTCTAAGACATCGCAGCCTAC...................................................................................................................................................................................................................................................2460.171010000
...................................................................................................................CTTCCAGCTAGACCATTGAGGC...............................................................................................................................................................................................................22120.172101000
.....................................................GACACACAAGCCGTTACAGCGACAGACT.......................................................................................................................................................................................................................................................................2870.141100000
.....................................................GACACACAAGCCGTTACAGCGACAGAC........................................................................................................................................................................................................................................................................2770.141010000
...........ATAC-ATACTGTGGAAGAACAGA......................................................................................................................................................................................................................................................................................................................2270.141001000
.........................................................CACAAGCCGTTACAGCGACAGACTTC.....................................................................................................................................................................................................................................................................2670.141010000
..................................................................................CTAAGACATCGCAGCCTACTGGCTAGA...........................................................................................................................................................................................................................................2770.141001000
..............................................................................ACTTCTAAGACATCGCAGCCTACTGG................................................................................................................................................................................................................................................2670.141100000
................................................................................TTCTAAGACATCGCAGCCTACTGG................................................................................................................................................................................................................................................2480.131100000
....................................................................................AAGACATCGCAGCCTACTGGC...............................................................................................................................................................................................................................................2180.131010000
................................................................................TTCTAAGACATCGCAGCCTA....................................................................................................................................................................................................................................................2090.111100000
...........................................................................................................................TAGACCATTGAGGCGTCTTAAACGTC...................................................................................................................................................................................................26100.101010000
........................GAAGAACAGAT-AAATA------------GACACACAAGCC.......................................................................................................................................................................................................................................................................................28100.101010000
...........................GAACAGAT-AAATA------------GACACACAAGCC.......................................................................................................................................................................................................................................................................................25100.101010000
...........................GAACAGAT-AAATA------------GACACACAAGCCGT.....................................................................................................................................................................................................................................................................................27100.101000010
.......................................TA------------GACACACAAGCCGTTACAGCGAC............................................................................................................................................................................................................................................................................25100.101010000
.......................................TA------------GACACACAAGCCGTTACAGC...............................................................................................................................................................................................................................................................................22110.091010000
...............................................................................................................TTTACTTCCAGCTAGACCATTGAGGCG..............................................................................................................................................................................................................27110.091010000
...................................................................................................................CTTCCAGCTAGACCATTGAGGCGTC............................................................................................................................................................................................................25110.091010000
..................................T-AAATA------------GACACACAAGCCGTTACAGCGA.............................................................................................................................................................................................................................................................................28110.091100000
...............................................................................................................TTTACTTCCAGCTAGACCATTGAGGCGTC............................................................................................................................................................................................................29110.091100000
.................................AT-AAATA------------GACACACAAGCCGTTACAGC...............................................................................................................................................................................................................................................................................27110.091010000
................................GAT-AAATA------------GACACACAAGCCGTTACAGC...............................................................................................................................................................................................................................................................................28110.091010000
....................................................................................................................TTCCAGCTAGACCATTGAGGCGTCTTC.........................................................................................................................................................................................................27110.091000010
.........................................................................................................TAGAAATTTACTTCCAGCTAGACCATT....................................................................................................................................................................................................................27110.091010000
..................................T-AAATA------------GACACACAAGCCGTTACAG................................................................................................................................................................................................................................................................................25110.091010000
.....................................................GACACACAAGCCGTTACAGC...............................................................................................................................................................................................................................................................................20110.091100000
.....................................................................................................................TCCAGCTAGACCATTGAGGCGTC............................................................................................................................................................................................................23110.091100000
......................................................ACACACAAGCCGTTACAGCG..............................................................................................................................................................................................................................................................................20120.081100000
..............................................................................................................ATTTACTTCCAGCTAGACCATTGAGGC...............................................................................................................................................................................................................27120.081100000
..................................................................................................................................................................................................................................................................................TATGTATTAT-A-TTTTGGTTAGGCC----........................................24130.081010000
.................................................................................................................................................................................................................................................................................ATATGTATTAT-A-TTTTGGTTAGGCC----........................................25130.081010000
..................................................................................................................................................................................................................................................................................TATGTATTAT-A-TTTTGGTTAGGCT----TA......................................26130.081100000
...........................................................................................................................................................................................................................................................................................T-A-TTTTGGTTAGGCT----TACATT-GTATA............................26150.071100000
...............................................................................................................................................................................................................................................................................................TTTTGGTTAGGCT----TACATT-GTATATA..........................26160.061100000
.............................................................................................................................................................................................................................................................................................A-TTTTGGTTAGGCT----TACATT-GTATA............................25160.061100000
droBip1
AAGATTTGAAGCTAC-ATACTGTAGAAGAGCAGAT-TGGAA------------GGCATACAAGCCGATATAGTGATAGACTCTTAAGACACCGCAGCCTACTTGCTAGAAACCTACTTCCAGCTAGACCTTTGAGACGCCTTAAACGACAAGGCTTTGCC-----AAAA------CAATTAGGAGCC------------A-A--TAAGGATGCCA-T---ACC-----------------TATGATG-TAATCCT-----------------CATATTTGT----A-TTGAGGTTTGGTT----TATTTT-TCATTTTC--TAT-------------CCATGTGSizeHit CountTotal NormTotal
No Reads
droKik1
GAGAGCTACGCGTCCCCTGCTGTGGGAGACGCCAT-TAATA------------CCATTGCTGCCCGACACCGAGCCAGGCTGACTGGACATCCCAACCCGCTGGCCAGAGCGCTGCCTACTACGAGAGGAAGACGTCGACTGAAGAGGACCACTATCCGG-----GAGC------TGCCAACCCGGCAAATAAAC----TGATTTAA---------------------------A----TTGTATTGTTATTGTT--------CC-------TTTATCTCTAC-TACATGT----TAATTGTTATTTGA---TACTAGT--AGA-------------ATTGTTASizeHit CountTotal NormTotal
No Reads
droFic1
GAGACCTAAATCTAC-ACACTGTGGAAGAACAGAT-TGGGA------------GACACACAAGCCGATACCGAGATAGATTAGGAAGACACCGCAGCTTACTGGCTAGGAATCTACTCCCAGCGAGACCTTTGAGGCGTCTCAAAAGGCAAGGCTTTGCC-----AAGA------CGATAAGGAATC------------A-A--TAAGAAAAT-A-------------------------CTATATA-TAATCCT-----------------CTTC---TTAAT-G-CTGAGGTTTGGTT----ACTTTTCTCATTGGT--GAC-------------ACCTGTGSizeHit CountTotal NormTotal
No Reads
droEle1
ACGACCTGCGACTTG-TTCCTGTGGGCGACCTCCT-CAACC------------AGCACAGCCAACGGTACTCGGACAGGCTAAGGAACCATCCAAACCCACTGGCTAGCAGGCTGACTGACCCGCAATCTCTAAGAAGATTAAAGAGATTCCAC-----C-----CCAG------CGATCTGTCTTC------------C-C--GT-----GTTG-TA----CAATA---------------------ATATT-------------GTATTCCTTGTTAACA-------AT-------TT----GTAAAT-ATG-TGTA--AAT-------------ATATGT-SizeHit CountTotal NormTotal
No Reads
droRho1
GGGACCTAAATATCC-AAACTGTGGAGCAGCAGAT-TGGCC------------TACACACCAGCAGGTAGAGAGACAGACTTCTTAGTCATCGGAACCGACTCGCAAGAAGACTCCTGCCAGCTAGACCGCTCAGACGGCTCAAGAGACTTGGGTTCGCT-----AAAA------CCATCAGACATC------------C-A--TAAATATGATC-TC----CAATA---------------------AAATCCA-----------------TTTGCTGAAGGC-A--TGAGGTTTGGTT----CAAATCCA---TATA--CAA-------------AACTATASizeHit CountTotal NormTotal
No Reads
droBia1
ATGACCTAAACCTGA-GTCTTGTTGAAGACCAAAT-ATCGT------------TCTTCTCAAGCAGGTACAACGACCGTCTAACTGCCCACCGTAATCGTCTAGCCCGGAGATTACAGGGGGCTATCCCAATTCGCAGGCTCAAAAGAAGACATTTTGGG-----CTGC------TCCTAAGAGACT------------A-A--TATGAATATAT-T---ATT-ACTTGAA---A----CT-AGTCGT--AATTTGATCTACTCCTATATACCAAGTTGAAA-------AC----TAATT----ATAATTTATAATTAA--GAGATTATTTACTTAAGAAAACASizeHit CountTotal NormTotal
No Reads
droTak1
GAGATCTCAAAATTC-CAAAGATAGGCGATGTCATACGAAT------------AGCACGCAGAAAAGCACTATAATCGCCTTGGCTCTCATCCAAACTCCCTAGCGAGGAGACTAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GAGATCTGAAATTGT-TCACTGTGGAGGAACAAAT-TGGTA------------GAAACACAAGCAGATACAGTGACAGACTAATAAGACATCGCAGCCCACTCGCTAGGAAACTACTGCCGGCTAGACCCCTGAGACGTCTGAAACGGAAAGGT-TTGCC-----AAAA------CAATTAGAAGAC------------A-A--TCAGACATT-TTC-----------------------ACATTTGTAAATTTT-----------------TT-----AAAGT-A-ATTCGATTTGGTT----TTATATTAC---ACA--CA--------------CAATGTGSizeHit CountTotal NormTotal
No Reads
dm3
GTGATCTGAATCTTC-ATACAGTGGAAGAGCAGAT-CTCCA------------GGCACACCAGCAGATATAGTGATAGACTAAGACGACACCACAGTATACTTGCTAGACGCTTACTCCCTGCTAGGCCTCTAAGGAGATTAAAAAGGAAGGGCTTCGCC-----AAAA------CACTTGGACAAC------------C-C--TAAATACCCCCTCGAA----ATATGAG---A----CATAGTTGTAAGTCCT-----------------CACATGATTAGT-G--AGAGGTTTGGTT----TTATCTTTT---ATAT-GTT-------------AATTGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.........................................................................................ACCACAGTATACTTGCTAGACGCT.......................................................................................................................................................................................................................................24202.254500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000020100100000000000000000000000000000000000000000090000000020000000000000002101200000000000000000000000000000000000000000000010000000000000000000000000000000030000000000000000000000000
..............C-ATACAGTGGAAGAGCAGAT-CTCCA------------G..................................................................................................................................................................................................................................................................................................26202.25450000000000000000000000010000000000000000000000000030000000000000000000000000000100000000000000000000000000000000000000000000000000000000000020001201000370000000000000000000000000000000000000000000000000002000335000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003214000000
........................................................................................CACCACAGTATACTTGCTAGACG.........................................................................................................................................................................................................................................23202.154300000000000000000000030000000000000010000100002000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000008103000101100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................TATAGTGATAGACTAAGACGACACC............................................................................................................................................................................................................................................................25202.154300000000000000000000000000000000000000000000001000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409010000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000010300000
..................................T-CTCCA------------GGCACACCAGCAGATATAG................................................................................................................................................................................................................................................................................25202.104200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020001000000101000000000000000000000000000000000000000200000000100000000000000000000409050130000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
.........................................................CACCAGCAGATATAGTGATAGACTAA.....................................................................................................................................................................................................................................................................26202.104200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000003110000000000000000000000000000000000110000000000000000001000004010000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000002012000000
........................................................................................................................................................................................................................................................................................TAGT-G--AGAGGTTTGGTT----TTATCTTT................................25202.10420000000000000000000001000000000000000000000000001300100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200610000200000000000000000000000000000000000000000060000000004003000700020000000000000000000000000001000000000000000000000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................................................CCCCCTCGAA----ATATGAG---A----CATAGTTGT................................................................................................27162.0633000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000000010000001000200000000000000000000000001400000
...................................................................................................................................................................................................................CCCCTCGAA----ATATGAG---A----CATAGTTGT................................................................................................26192.053900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000100000002000002001200000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000002600000
...........................................................................................................................................................TCGCC-----AAAA------CACTTGGACAAC------------C-C--TAA.........................................................................................................................................26202.054100000000000000000000000000000000000000000000000000000000000000000000000000000026100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500860000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GACAAC------------C-C--TAAATACCCCCTCGAA----AT......................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GCTTCGCC-----AAAA------CACTTGGACAAC------------C-C--TA..........................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATTAAAAAGGAAGGGCTTC...........................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GGAGATTAAAAAGGAAGGGCT.............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000
....................................................................................................................................................AAGGGCTTCGCC-----AAAA------CACTTGG..................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................AAAAAGGAAGGGCTTCGCC-----...................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GAGATTAAAAAGGAAGGGCTTCGCC-----AAA................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGGACAAC------------C-C--TAAATACCCCCTCGAA----AA......................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GAGATTAAAAAGGAAGGGCTTCGCC-----AC.................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CTTCGCC-----AAAA------CACTTGGACAAC------------C-C--TAAA........................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ACTTGGACAAC------------C-C--TAAATACCCCCTCGAA----........................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAAGGAAGGGCTTCGCC-----AAAA------CA.......................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ACAAC------------C-C--TAAATACCCCCTCGAA----ATA.....................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTAAAAAGGAAGGGCTTCGCC-----AA.................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CTTCGCC-----AAAA------CACTTGGACAAC------------C-C--TAA.........................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TAAAAAGGAAGGGCTTCGCC-----AAAC------T........................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.....................................................................................................................................AGGAGATTAAAAAGGAAGGGCT.............................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
......................................................................................................................................................................AAA------CACTTGGACAAC------------C-C--TAAATACCCC..................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTGGACAAC------------C-C--TAAATACCCCCTCGAT----........................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................C------------C-C--TAAATACCCCCTCGAA----ATATGAT---..............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
........................................................................................................................................AGATTAAAAAGGAAGGGCTTCGCC-----AA.................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTTGGACAAC------------C-C--TAAATACCCCCTCGAA----........................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GAGATTAAAAAGGAAGGGCTTCGCC-----A..................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAGACCTCAATATTC-ACACAGTTGAGACACAAAT-TGGGA------------GACATACAAGTCGATATAGTGACAGATTACTAAGCCATAGCAGTCTTCTTGCAAGACGTCTCATCCCCGCTCGACCTCTGAGACGACTCAAACGGCAAGGCTTCGCC-----AAGA------TAATTGGGCAAC------------A-G--TAAAAACTCTT-C---ATT-----------------TATGTTCCTACTTCA-----------------CTTATTTTAAT-TTTATAGTGTTTGGTA----ATTCC---TA---AG--AAT----ATTTATCCACCCTGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........TATTC-ACACAGTTGAGACACAAAT-....................................................................................................................................................................................................................................................................................................................2466.1737000028001005030000
..........................................................................................................................................................................................................................................................................................T-TTTATAGTGTTTGGTA----ATTCC---TA---AG--A......................2716.00600000032100000000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTTC...........................................................................................................................................................................................2665.3332000000011040260000
.................................................................................................................................TCTGAGACGACTCAAACGGCAAGGCT.............................................................................................................................................................................................2663.8323001000201500113000
............................................................................................................................................................................................................................................................................................TTTATAGTGTTTGGTA----ATTCC---TA---AG--AA.....................2713.00300000000210000000
..............................................................................................AGTCTTCTTGCAAGACGTCTCA....................................................................................................................................................................................................................................2293.0027000027000000000000
.................................................................................................................................TCTGAGACGACTCAAACGGCAAGGCTT............................................................................................................................................................................................2762.8317000000111000131000
...........................................................................................................................TCGACCTCTGAGACGACTCAAACGGCA..................................................................................................................................................................................................2752.801400000052230020000
............TTC-ACACAGTTGAGACACAAAT-TGGGA------------...................................................................................................................................................................................................................................................................................................2742.751100000035120000000
....................................TGGGA------------GACATACAAGTCGA.....................................................................................................................................................................................................................................................................................19122.6732000032000000000000
......................................................................................................TGCAAGACGTCTCATCCCCGC.............................................................................................................................................................................................................................21122.5831000003001000000000
.......................................GA------------GACATACAAGTCGATATA.................................................................................................................................................................................................................................................................................20132.5433000033000000000000
............................................................................................................................................TCAAACGGCAAGGCTTCGCC-----AAGA------.........................................................................................................................................................................2432.33700000021220000000
.....................................................................................................................................................AAGGCTTCGCC-----AAGA------TAATTGGGCAAC------------.................................................................................................................................................2712.00200000010001000000
..........TATTC-ACACAGTTGAGACACAAAT-TGGGA------------...................................................................................................................................................................................................................................................................................................2942.00800010034000000000
.............................................................................................................................................................................................................................TT-----------------TATGTTCCTACTTCA-----------------CTTA....................................................................2152.0010000010000000000000
......................................................................................................................................................................AGA------TAATTGGGCAAC------------A-G--TAAAAACTC...................................................................................................................................2612.00200000000000020000
.................................................................................................................................TCTGAGACGACTCAAACGGCAAGGC..............................................................................................................................................................................................2561.831100000012330020000
....................................TGGGA------------GACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................27101.701700010019321000000
.................................................................................................................................TCTGAGACGACTCAAACGGCAAGGCTTC...........................................................................................................................................................................................2861.50900000010000080000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCT.............................................................................................................................................................................................2461.50900000011010060000
................................................................................................................................................................................................................................................TATGTTCCTACTTCA-----------------CTTATTTTAA..............................................................2511.00100000001000000000
...........................................................................................................................TCGACCTCTGAGACGACTCAAACGGC...................................................................................................................................................................................................2651.00500000000120020000
............................................................................................................................................................................................................................................................................................TTTATAGTGTTTGGTA----ATTCC---TA---AG--AAT----A...............2911.00100000010000000000
.....................................................................................................................................................................AAGA------TAATTGGGCAAC------------A-G--TAAAAACTCT..................................................................................................................................2811.00100000001000000000
.......................................................................GTGACAGATTACTAAGCCATAGCAG........................................................................................................................................................................................................................................................2511.00100000001000000000
..........................................................................................................................................................TTCGCC-----AAGA------TAATTGGGCAAC------------A-G--T...........................................................................................................................................2511.00100000000001000000
...............................................................................................................................................................................TAATTGGGCAAC------------A-G--TAAAAACTCT..................................................................................................................................2411.00100100000000000000
..........TATTC-ACACAGTTGAGACACAAAT-T...................................................................................................................................................................................................................................................................................................................2561.00600000032010000000
..................................................................................................TTCTTGCAAGACGTCTCATCCCCGC.............................................................................................................................................................................................................................2590.89800010013101010000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTT............................................................................................................................................................................................2560.83500000000000041000
...........................................................................................................................TCGACCTCTGAGACGACTCAAACGGCAA.................................................................................................................................................................................................2850.80400000000000040000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGAC............................................................................................................................................................................................................24110.73800000000000071000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGACTCA.........................................................................................................................................................................................................2770.71500000000010040000
...........................................................................................................................................CTCAAACGGCAAGGCTTCGCC-----AAGA------.........................................................................................................................................................................2530.67200000002000000000
......................................................................................................................................GACGACTCAAACGGCAAGGCTTCGCC-----AAGA------.........................................................................................................................................................................3030.67200000011000000000
..................................................................................................TTCTTGCAAGACGTCTCATCCCCGCT............................................................................................................................................................................................................................2690.67600100023000000000
..............................................................................................................................................................................................................................................................................................TATAGTGTTTGGTA----ATTCC---TA---AG--AA.....................2560.67400000010102000000
............................................................................................................................CGACCTCTGAGACGACTCAAACGGC...................................................................................................................................................................................................2550.60300000010020000000
......................................................................................................................................GACGACTCAAACGGCAAGGCTTCGC.........................................................................................................................................................................................2550.60300000010000020000
....................................TGGGA------------GACATACAAGTCGATA...................................................................................................................................................................................................................................................................................21120.58700000020401000000
................................................................................................................................................................................................................................................TATGTTCCTACTTCA-----------------CTTATTTT................................................................2370.57400010002000010000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGACTC..........................................................................................................................................................................................................2670.57400000000000040000
.....................................................................TAGTGACAGATTACT....................................................................................................................................................................................................................................................................1590.56500000000005000000
................................................................................................................................................................................................................................................................................................TAGTGTTTGGTA----ATTCC---TA---AG--AAT----A...............2560.50300000011001000000
.............TC-ACACAGTTGAGACACAAAT-TGGGA------------GACA...............................................................................................................................................................................................................................................................................................3040.50200000000200000000
..........................................................................................................................................................................................................................................................................................T-TTTATAGTGTTTGGTA----ATTCC---TA---AG--AT.....................2820.50100000001000000000
.....................................................GACATACAAGTCGATATAGTGACAGAT........................................................................................................................................................................................................................................................................2760.50300000012000000000
.............TC-ACACAGTTGAGACACAAAT-TGGGA------------...................................................................................................................................................................................................................................................................................................2640.50200000000101000000
.....................................................................................................................................AGACGACTCAAACGGCAAGGCTTC...........................................................................................................................................................................................2460.50300000010000020000
......................................................................................................TGCAAGACGTCTCATCCCCGCTCGACC.......................................................................................................................................................................................................................27120.42500010002011000000
.........................................................................................................................GCTCGACCTCTGAGACGACTCAAACGGCA..................................................................................................................................................................................................2950.40200000002000000000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTTCGC.........................................................................................................................................................................................2850.40200000001000010000
............................................................................................................................CGACCTCTGAGACGACTCAAACGGCA..................................................................................................................................................................................................2650.40200010000000010000
..............................................................................................................................................................................................................................................................................................TATAGTGTTTGGTA----ATTCC---TA---AG--A......................2460.33200000010100000000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGC..............................................................................................................................................................................................2360.33200000020000000000
.........................................................................................................................................GACTCAAACGGCAAGGCTTCGCC-----AAGA------.........................................................................................................................................................................2730.33100000000100000000
..................................................................................................................................................................................TTGGGCAAC------------A-G--TAAAAACTC...................................................................................................................................2060.33200200000000000000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTA............................................................................................................................................................................................2560.33200000000000020000
...................................................................................................TCTTGCAAGACGTCTCATCCCCGCT............................................................................................................................................................................................................................2590.33300000002000010000
.................................................................................................................................TCTGAGACGACTCAAACGGCAAGGCAA............................................................................................................................................................................................2760.33200000000000020000
..........TATTC-ACACAGTTGAGACACAAA......................................................................................................................................................................................................................................................................................................................2360.33200000010010000000
...................CAGTTGAGACACAAAT-TGGGA------------GACATA.............................................................................................................................................................................................................................................................................................2770.29200000000010010000
..............C-ACACAGTTGAGACACAAAT-TGGGA------------...................................................................................................................................................................................................................................................................................................2540.25100000001000000000
..........TATTC-ACACAGTTGAGACACAAAT-TGA.................................................................................................................................................................................................................................................................................................................2740.25100000000000010000
.................................................................................................................TCATCCCCGCTCGACCTCTGAGACGACA...........................................................................................................................................................................................................2890.22200000000000020000
.................................................................................................CTTCTTGCAAGACGTCTCATCCCCG..............................................................................................................................................................................................................................2590.22200000000000011000
................................................................................................TCTTCTTGCAAGACGTCTCATCCCC...............................................................................................................................................................................................................................2590.22200020000000000000
..................ACAGTTGAGACACAAAT-....................................................................................................................................................................................................................................................................................................................1790.22200000000002000000
................................................................................................TCTTCTTGCAAGACGTCTCATCCCCGC.............................................................................................................................................................................................................................2790.22200010000001000000
..................................................................................................TTCTTGCAAGACGTCTCATCCCCGCTC...........................................................................................................................................................................................................................2790.22200000010010000000
...........................................................................................................GACGTCTCATCCCCGCTCGACCTCTGAGA................................................................................................................................................................................................................2990.22200000002000000000
.............................................................................................................................GACCTCTGAGACGACTCAAACGGCA..................................................................................................................................................................................................2550.20100000000010000000
..........................................................................................................................CTCGACCTCTGAGACGACTCAAACGGC...................................................................................................................................................................................................2750.20100000001000000000
.................................................................................................................TCATCCCCGCTCGACCTCTGAGACGACTC..........................................................................................................................................................................................................2950.20100000000000010000
.............................................................................................................................GACCTCTGAGACGACTCAAACGGCAA.................................................................................................................................................................................................2650.20100000000000010000
......................................................................................................................................GACGACTCAAACGGCAAGGCTTCGCC-----...................................................................................................................................................................................2650.20100000000001000000
...............................................................................................................................CCTCTGAGACGACTCAAACGGCAAGGC..............................................................................................................................................................................................2750.20100000000000010000
.............................................................................................................................GACCTCTGAGACGACTCAAACGGC...................................................................................................................................................................................................2450.20100000000000010000
.............................................................................................................................GACCTCTGAGACGACTCAAACGGCAAGGC..............................................................................................................................................................................................2950.20100000010000000000
....................................TGGGA------------GACATACAAGTCGATATAGT...............................................................................................................................................................................................................................................................................25100.20200000000002000000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGACTCAA........................................................................................................................................................................................................2850.20100000000000010000
...........................................................................................................................TCGACCTCTGAGACGACTCAAACGGCAAGG...............................................................................................................................................................................................3050.20100000010000000000
...............................................................................................................................CCTCTGAGACGACTCAAACGGCAAGGCT.............................................................................................................................................................................................2850.20100000000000010000
........................................................................................................................CGCTCGACCTCTGAGACGACTCAAA.......................................................................................................................................................................................................2550.20100000010000000000
.......................TGAGACACAAAT-TGGGA------------GACATACAA..........................................................................................................................................................................................................................................................................................2660.17100000000000001000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTTCA..........................................................................................................................................................................................2760.17100000000000010000
................................................................................................................................CTCTGAGACGACTCAAACGGCAAGGCT.............................................................................................................................................................................................2760.17100000000000010000
..........TATTC-ACACAGTTGAGACACAAAC-CT..................................................................................................................................................................................................................................................................................................................2660.17100000000010000000
...................................................................................................................................TGAGACGACTCAAACGGCAAGGCTTCG..........................................................................................................................................................................................2760.17100000010000000000
.....................................................................................................TTGCAAGACGTCTCATCCCCGC.............................................................................................................................................................................................................................22120.17200000001001000000
..................................T-TGGGA------------GACATACAAGTCGATA...................................................................................................................................................................................................................................................................................22120.17200000010100000000
.................................................................................................................................TCTGAGACGACTCAAACGGC...................................................................................................................................................................................................2060.17100000000100000000
.....................................................GACATACAAGTCGATATAGTGACAGATA.......................................................................................................................................................................................................................................................................2860.17100000000010000000
.....................................................GACATACAAGTCGATATAGTGACAGA.........................................................................................................................................................................................................................................................................26120.17200000011000000000
.......................TGAGACACAAAT-TGGGA------------GACATACAAG.........................................................................................................................................................................................................................................................................................2760.17100000000010000000
.........................................................TACAAGTCGATATAGTGACAGATTA......................................................................................................................................................................................................................................................................2560.17100010000000000000
.....................................................................................................................................AGACGACTCAAACGGCAAGGCTTCA..........................................................................................................................................................................................2560.17100000010000000000
....................................................................................................CTTGCAAGACGTCTCATCCCCGCTC...........................................................................................................................................................................................................................25120.17200000000001001000
................................................................................................................................................................................................................................................................................................TAGTGTTTGGTA----ATTCC---TA---AG--A......................2260.17100000000001000000
................................................................................................................................................................................................................................................................................................TAGTGTTTGGTA----ATTCC---TA---AG--AAT----ATA.............2760.17100000000001000000
..............................................................................................................................................................................................................................................................................................TATAGTGTTTGGTA----ATTCC---TA---AG--AAT----A...............2760.17100000001000000000
.....................................................................................................................................AGACGACTCAAACGGCAAGGT..............................................................................................................................................................................................2160.17100000000001000000
..................................................................................................................................................................................TTGGGCAAC------------A-G--TAAAAACTCTT-C---ATT-----------------........................................................................................................2660.17100010000000000000
......................................................................................................TGCAAGACGTCTCATCCCCGCTCGA.........................................................................................................................................................................................................................25120.17200000000010010000
.................CACAGTTGAGACACAAAT-TGGGA------------GACA...............................................................................................................................................................................................................................................................................................2770.14100000000010000000
.....................................................................................................................CCCCGCTCGACCTCTGAGACGACTC..........................................................................................................................................................................................................2570.14100000000000010000
.................................................................................................................TCATCCCCGCTCGACCTCTGAGACGACT...........................................................................................................................................................................................................2880.13100000000000010000
..................................................................................................................CATCCCCGCTCGACCTCTGAGACGACT...........................................................................................................................................................................................................2780.13100000000000010000
..........TATTC-ACACAGTTGAGACA..........................................................................................................................................................................................................................................................................................................................1980.13100000000001000000
.......................TGAGACACAAAT-TGGGA------------GACA...............................................................................................................................................................................................................................................................................................2180.13100000000000010000
.................................................................................................................TCATCCCCGCTCGACCTCTGAGACGAC............................................................................................................................................................................................................2790.11100000000000010000
..............................................................................................AGTCTTCTTGCAAGACGTCTCATC..................................................................................................................................................................................................................................2490.11100010000000000000
...................................................................................................TCTTGCAAGACGTCTCATCCCCGCTCGA.........................................................................................................................................................................................................................2890.11100000001000000000
..................................................................................................TTCTTGCAAGACGTCTCATCCCC...............................................................................................................................................................................................................................2390.11100000000001000000
..................................................................................................TTCTTGCAAGACGTCTCATCCCCG..............................................................................................................................................................................................................................2490.11100000001000000000
...................................................................................................TCTTGCAAGACGTCTCATCCCCGCTCGACC.......................................................................................................................................................................................................................3090.11100000001000000000
................................................................................................TCTTCTTGCAAGACGTCTCA....................................................................................................................................................................................................................................2090.11100000000001000000
...................................................................................................TCTTGCAAGACGTCTCATCCCCGCTC...........................................................................................................................................................................................................................2690.11100000000000010000
................................................................................................TCTTCTTGCAAGACGTCTC.....................................................................................................................................................................................................................................1990.11100000000001000000
...................................................................................................TCTTGCAAGACGTCTCATC..................................................................................................................................................................................................................................1990.11100000000001000000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGACT...........................................................................................................................................................................................................25100.10100010000000000000
....................................TGGGA------------GACATACAAGTCGATATAGTG..............................................................................................................................................................................................................................................................................26100.10100000000000010000
..................................T-TGGGA------------GACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................28100.10100000000010000000
......................................................................................................................CCCGCTCGACCTCTGAGACGACT...........................................................................................................................................................................................................23100.10100000000000010000
....................................TGGGA------------GACATACAAGTCGATAT..................................................................................................................................................................................................................................................................................22110.09100000000000010000
....................................TGGGA------------GACATACAAGTCGATATA.................................................................................................................................................................................................................................................................................23110.09100000000010000000
....................................TGGGA------------GACATACAAGTCGATATAT................................................................................................................................................................................................................................................................................24110.09100000000000010000
.........................................................................................................................................................................................................G--TAAAAACTCTT-C---ATT-----------------TATGTTCCTAC.............................................................................................27110.09100000001000000000
...................................................................................................................ATCCCCGCTCGACCTCTGAGACGACAA..........................................................................................................................................................................................................27110.09100000000000010000
......................................................................................GCCATAGCAGTCTTCTTGCAAGACGTC.......................................................................................................................................................................................................................................27110.09100000000001000000
.........................................................................................................................................................................................................G--TAAAAACTCTT-C---ATT-----------------TATGTTCCT...............................................................................................25110.09100100000000000000
....................................................................................................................TCCCCGCTCGACCTCTGAGACGACA...........................................................................................................................................................................................................25110.09100000000000010000
....................................................................................................CTTGCAAGACGTCTCATCCCCGC.............................................................................................................................................................................................................................23120.08100000010000000000
........................................................................................................CAAGACGTCTCATCCCCGCTC...........................................................................................................................................................................................................................21120.08100000000000010000
......................................................................................................TGCAAGACGTCTCATCCCCGCTCGAC........................................................................................................................................................................................................................26120.08100000010000000000
.....................................................................................................TTGCAAGACGTCTCATCCCCGCTC...........................................................................................................................................................................................................................24120.08100000000001000000
......................................GGA------------GACATACAAGTCGATATAGTGAA............................................................................................................................................................................................................................................................................26120.08100000000010000000
.........................................................TACAAGTCGATATAGTGAC............................................................................................................................................................................................................................................................................19120.08100000000001000000
.....................................................GACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................22120.08100000000010000000
...............................AAAT-TGGGA------------GACATACAAGT........................................................................................................................................................................................................................................................................................20120.08100000000001000000
....................................................................................................CTTGCAAGACGTCTCATCCC................................................................................................................................................................................................................................20120.08100000000000010000
......................................................ACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................21120.08100000010000000000
.......................................GA------------GACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................24120.08100000001000000000
......................................................ACATACAAGTCGATATAGTG..............................................................................................................................................................................................................................................................................20120.08100000000010000000
......................................................................................................TGCAAGACGTCTCATCCCCG..............................................................................................................................................................................................................................20120.08100000000000001000
....................................TGGGA------------GACATACAAGTCGAT....................................................................................................................................................................................................................................................................................20120.08100000000001000000
............................................................................................................................................................................................................TAAAAACTCTT-C---ATT-----------------TATGTTCCTAC.............................................................................................26120.08100000000010000000
......................................................................................................TGCAAGACGTCTCATCCCCGCTCGACCT......................................................................................................................................................................................................................28120.08100000010000000000
......................................GGA------------GACATACAAGTCGATATAGTGA.............................................................................................................................................................................................................................................................................25120.08100000001000000000
.....................................................................................................TTGCAAGACGTCTCATCCCCGCTCGACC.......................................................................................................................................................................................................................28120.08100010000000000000
..........TATTC-ACACAGTTGAG.............................................................................................................................................................................................................................................................................................................................16130.08100000000001000000
..............................................................................................AGTCTTCTTGCAAGACGTCT......................................................................................................................................................................................................................................20130.08100000000001000000
..........................................................................................TAGCAGTCTTCTTGCAAGACGTCT......................................................................................................................................................................................................................................24130.08100000000010000000
...........................................................................................................GACGTCTCATCCCCGCTCGAC........................................................................................................................................................................................................................21130.08100000000001000000
..............................................................................................AGTCTTCTTGCAAGACG.........................................................................................................................................................................................................................................17130.08100000000001000000
droSec2
GTGATCTGAATCTTC-ATACAGTGGAAGAGCAGAT-CTCCA------------GGCACACCAGCAGATATAGTGATAGAGTTAGACGACACCACAGTATACTTGCTAGACGCTTACTCCCTGCTAGGCCTCTAAGGAGATTAAAAAGGAAGGGTTTCGCC-----AAAA------CACTTAAACAAC------------C-C--TAAAGACCCCT-CGAA----ATATGAG---A----CATAGTTGTAAGTCCT-----------------CACATGCTTAGT-G--CGAGGTTTGGTT----TTATCATTT---ATCT-GTT-------------AATTGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGGACCTGAATCTGC-ATACAGTAGAAGAGCAGAT-CTCAA------------GGCACAAGAGCAGATACAGTGATAGGCTTAAAACACACCACAGCATGCTGGCAAAACGCCTACTCCCTGCCAGGCCTCTAAGAAGACTCAAAAGAAAGGGCTTTGCC-----AAAA------CAATTGGACAGC------------T-T--TAAAGACCCCCTCGAT----GTTTGAG---A----TTTTGTTGTTAGTCCT-----------------CCCGCGATAAGT-G--AGAGATTTGGTT----ACATTATTT---ATATGTTT-------------AATTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................TAGGCTTAAAACACACCACAGCATGCT..................................................................................................................................................................................................................................................2711.00101000000000
......................................CAA------------GGCACAAGAGCAGATACAGTGATA...........................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GGGACCTTAATCTGC-ATACAGTGGAAGAACAGAT-CTCAA------------GGCACACAAGCAGATACAGTGATAGGCTTAAAAGACACCACAGCATGCTAGCAAGACGCCTACTCCCTGCCAGGCCTCTAAGAAGGCTTAAAAGAAAGGGCTTTGCC-----AAAA------CAATTGGACAGC------------T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----CTATGTTGTTAGTCTT-----------------CCCACGATAAGT-G--AGAAGTTTGGTT----ATATTATA---TATG--TTT-------------ATATGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........TCTGC-ATACAGTGGAAGAACAGAT-C...................................................................................................................................................................................................................................................................................................................25202.7555320009014
..........TCTGC-ATACAGTGGAAGAACAGAT-....................................................................................................................................................................................................................................................................................................................24201.002080002010
.............................................................................................................................................................................................................................................................TT-----------------CCCACGATAAGT-G--AGAAGTTTGGT.............................................26200.901800000018
................................................................................TTAAAAGACACCACAGCATGCTAG................................................................................................................................................................................................................................................24200.701414000000
..........TCTGC-ATACAGTGGAAGAACAGA......................................................................................................................................................................................................................................................................................................................23200.701414000000
..........TCTGC-ATACAGTGGAAGAACAGAT-CA..................................................................................................................................................................................................................................................................................................................26200.551100001010
.......................................................................................................................................AAGGCTTAAAAGAAAGGGCTTTGC.........................................................................................................................................................................................24200.501010000000
................................................................................TTAAAAGACACCACAGCATGCTAGC...............................................................................................................................................................................................................................................25200.501010000000
.......................................................CACACAAGCAGATACAGTGATAGGCT.......................................................................................................................................................................................................................................................................26200.4596000102
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCGAC----G.......................................................................................................................24200.4088000000
..........TCTGC-ATACAGTGGAAGAACAGAT-CTC.................................................................................................................................................................................................................................................................................................................27200.3574001200
................................................................................TTAAAAGACACCACAGCATGCTAGT...............................................................................................................................................................................................................................................25200.3062000004
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----C........................................................................................................31200.3060000006
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCGAC----GT......................................................................................................................25200.3066000000
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCCCTCGAC----G.......................................................................................................................28200.2551100012
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----GTTTGAT---..............................................................................................................29200.2550000005
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----G.......................................................................................................................23200.2555000000
.......................................................CACACAAGCAGATACAGTGATAGG.........................................................................................................................................................................................................................................................................24200.2042000002
.........................................................CACAAGCAGATACAGTGATAGGCT.......................................................................................................................................................................................................................................................................24200.2044000000
..........TCTGC-ATACAGTGGAAGAACAGAT-CT..................................................................................................................................................................................................................................................................................................................26200.2044000000
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----C........................................................................................................32200.2040000004
................................................................................................CATGCTAGCAAGACGCCTACTCC.................................................................................................................................................................................................................................23200.2044000000
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCGAC----........................................................................................................................23200.2044000000
........................................A------------GGCACACAAGCAGATACAGTGATAGGC........................................................................................................................................................................................................................................................................28200.2040100003
.......................................................CACACAAGCAGATACAGTGATAGGC........................................................................................................................................................................................................................................................................25200.1533000000
.........................................................................................................AAGACGCCTACTCCCTGCCAGGCCTC.....................................................................................................................................................................................................................26200.1530000003
..GACCTTAATCTGC-ATACAGT.................................................................................................................................................................................................................................................................................................................................20200.1530000120
................ATACAGTGGAAGAACAGAT-CT..................................................................................................................................................................................................................................................................................................................21200.1530000210
..................................................................................................TGCTAGCAAGACGCCTACTCCCTGCC............................................................................................................................................................................................................................26200.1533000000
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCCCTCG..............................................................................................................................25200.1533000000
.....................................................................................................................................................................................GACAGC------------T-T--TAAAGACCCCCTCGA.............................................................................................................................23200.1533000000
............................................................................................................ACGCCTACTCCCTGCCAGGCCTCTAAG.................................................................................................................................................................................................................27200.1530000003
.................................................................GATACAGTGATAGGCTTAAAAGACA..............................................................................................................................................................................................................................................................25200.1533000000
.................................................................................................................TACTCCCTGCCAGGCCTCTAAG.................................................................................................................................................................................................................22200.1533000000
................................................................................TTAAAAGACACCACAGCATGCT..................................................................................................................................................................................................................................................22200.1533000000
..........TCTGC-ATACAGTGGAAGAACAGAT-CTCA................................................................................................................................................................................................................................................................................................................28200.1532000100
.................................................................................TAAAAGACACCACAGCATGCTAG................................................................................................................................................................................................................................................23200.1533000000
.............................ACAGAT-CTCAA------------GGCACACAAGCAGA.....................................................................................................................................................................................................................................................................................25200.1531000101
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCC..................................................................................................................................21200.1022000000
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----........................................................................................................................22200.1022000000
...........CTGC-ATACAGTGGAAGAACAGAT-C...................................................................................................................................................................................................................................................................................................................24200.1022000000
...................................................................................................................................................................................TGGACAGC------------T-T--TAAAGACCCCCTCGAC----G.......................................................................................................................27200.1021100000
.................................................................................................................................................................................ATTGGACAGC------------T-T--TAAAGACCCCC.................................................................................................................................23200.1022000000
.................................................................................TAAAAGACACCACAGCATGCTAGCAAGAT..........................................................................................................................................................................................................................................29200.1020000002
..................................................................ATACAGTGATAGGCTTAAAAGACACC............................................................................................................................................................................................................................................................26200.1020000200
.....................................TCAA------------GGCACACAAGCAGA.....................................................................................................................................................................................................................................................................................18200.1022000000
............TGC-ATACAGTGGAAGAACAGAT-CTC.................................................................................................................................................................................................................................................................................................................25200.1020001010
..............................................................................GCTTAAAAGACACCACAGCATGCTAG................................................................................................................................................................................................................................................26200.1022000000
.......................................................................................................................................AAGGCTTAAAAGAAAGGGCTTTGCC-----...................................................................................................................................................................................25200.1022000000
..............................CAGAT-CTCAA------------GGCACACAAGCAGA.....................................................................................................................................................................................................................................................................................24200.1022000000
..................................................................................................................................................................................................................................................................................CACGATAAGT-G--AGAAGTTTGG..............................................21200.1022000000
................................................................................................................................................................................AATTGGACAGC------------T-T--TAAAGACCCCCTCGAC----........................................................................................................................29200.1020000002
...................................................................................................................................................................................TGGACAGC------------T-T--TAAAGACCCCCT................................................................................................................................22200.1022000000
.......................................................................................................................................................................................................T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----C........................................................................................................27200.1021000001
..........TCTGC-ATACAGTGGAAGAACAG.......................................................................................................................................................................................................................................................................................................................22200.1021000100
...................................................................................................................................TAAGAAGGCTTAAAAGAAAGGGCTT............................................................................................................................................................................................25200.1020000200
.....................................................................................................................................................................................GACAGC------------T-T--TAAAGACCCCCTCGAC----........................................................................................................................24200.1022000000
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCCCTCGAC----........................................................................................................................27200.1022000000
.............................................................AGCAGATACAGTGATAGGCTT......................................................................................................................................................................................................................................................................21200.1020000200
.................................................................................TAAAAGACACCACAGCATGCTAGC...............................................................................................................................................................................................................................................24200.1022000000
..........TCTGC-ATACAGTGGAAGAAC.........................................................................................................................................................................................................................................................................................................................20200.1022000000
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----GTTT....................................................................................................................26200.1022000000
..............................................................................................AGCATGCTAGCAAGACGCCTACTCCC................................................................................................................................................................................................................................26200.1022000000
............TGC-ATACAGTGGAAGAACAGAT-C...................................................................................................................................................................................................................................................................................................................23200.0511000000
.........ATCTGC-ATACAGTGGAAGAACAGAT-....................................................................................................................................................................................................................................................................................................................25200.0510000100
.....................................................................................AGACACCACAGCATGCTAGCAAGA...........................................................................................................................................................................................................................................24200.0511000000
.................................................................................TAAAAGACACCACAGCATG....................................................................................................................................................................................................................................................19200.0511000000
...................................................................................................................................................................................................................................................................................ACGATAAGT-G--AGAAGTTTGGTT----ATATT...................................27200.0511000000
.................TACAGTGGAAGAACAGAT-CTCAA------------G..................................................................................................................................................................................................................................................................................................24200.0510100000
.....................................................................................AGACACCACAGCATGCTAGCAAGACGC........................................................................................................................................................................................................................................27200.0510000100
.........................................................................................................................................................................................GC------------T-T--TAAAGACCCCCTCGAC----GTT.....................................................................................................................23200.0511000000
..........................AGAACAGAT-CTCAA------------GGCACACAAGCA.......................................................................................................................................................................................................................................................................................26200.0510000100
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCCCT................................................................................................................................23200.0511000000
..................ACAGTGGAAGAACAGAT-CTCAA------------G..................................................................................................................................................................................................................................................................................................23200.0510000100
...........................................................................................CACAGCATGCTAGCAAGACGCCTACTCC.................................................................................................................................................................................................................................28200.0511000000
........................................................................................CACCACAGCATGCTAGCAAGACGCC.......................................................................................................................................................................................................................................25200.0511000000
........................................................................................................................................................................................AGC------------T-T--TAAAGACCCCCTCGAC----GTTTGA..................................................................................................................27200.0510000100
................................................................AGATACAGTGATAGGCTTAAAAGA................................................................................................................................................................................................................................................................24200.0510000100
...........................................................................................CACAGCATGCTAGCAAGACGCCTAC....................................................................................................................................................................................................................................25200.0511000000
...................................................................TACAGTGATAGGCTTAAAAG.................................................................................................................................................................................................................................................................20200.0510000100
..........TCTGC-ATACAGTGGAAGAACA........................................................................................................................................................................................................................................................................................................................21200.0510000100
...................................................................................................................................................................................TGGACAGC------------T-T--TAAAGACCCCCTCGA.............................................................................................................................25200.0511000000
................................................................................................................................................AAGAAAGGGCTTTGCC-----AAAA------CA.......................................................................................................................................................................22200.0510000100
....................................................................................................................................................................................................................................................................................CGATAAGT-G--AGAAGTTTGGTT----........................................21200.0511000000
.........................................................CACAAGCAGATACAGTGATAGG.........................................................................................................................................................................................................................................................................22200.0511000000
............................AACAGAT-CTCAA------------GGCACACA...........................................................................................................................................................................................................................................................................................20200.0511000000
........................................................ACACAAGCAGATACAGTGATAGGCT.......................................................................................................................................................................................................................................................................25200.0511000000
..................................................................................................TGCTAGCAAGACGCCTACTCCCTGCCAGG.........................................................................................................................................................................................................................29200.0511000000
................................................................................................CATGCTAGCAAGACGCCTAC....................................................................................................................................................................................................................................20200.0511000000
.................TACAGTGGAAGAACAGAT-CTCA................................................................................................................................................................................................................................................................................................................22200.0510010000
................................................................................TTAAAAGACACCACAGCATGCTAA................................................................................................................................................................................................................................................24200.0511000000
.....................................................................................................................................................................AAAA------CAATTGGACAGC------------T-T--TAAAGACCCCC.................................................................................................................................29200.0511000000
..............................CAGAT-CTCAA------------GGCACACAAGCA.......................................................................................................................................................................................................................................................................................22200.0511000000
.........................................................CACAAGCAGATACAGTGATAGGCTTA.....................................................................................................................................................................................................................................................................26200.0511000000
................................................................................................................................CTCTAAGAAGGCTTAAAAGAAAGGGCTT............................................................................................................................................................................................28200.0510000100
.........................................................................................................................................GGCTTAAAAGAAAGGGCTTTGC.........................................................................................................................................................................................22200.0510000100
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCCCC.................................................................................................................................22200.0511000000
.............................................................................................................................................................................................................AAAGACCCCCTCGAC----GTTTGAG---A----C........................................................................................................24200.0511000000
.......................................................CACACAAGCAGATACAGTGATAGGCC.......................................................................................................................................................................................................................................................................26200.0510100000
.......................................................................................................................................................................................................................................................................................TAAGT-G--AGAAGTTTGGTT----ATATT...................................23200.0510000010
..................................................................................................................................................GAAAGGGCTTTGCC-----AAAA------CAATTGGAC................................................................................................................................................................27200.0510000010
.......................................................................................................................................................................AA------CAATTGGACAGC------------T-T--TAAAGACCCCCT................................................................................................................................28200.0511000000
....................................................................................................CTAGCAAGACGCCTACTCCCTGCC............................................................................................................................................................................................................................24200.0511000000
.............................................................................................................................................................................................................................................................TT-----------------CCCACGATAAGT-G--AGAAGTTTGGTT----........................................27200.0510000001
.............................................................AGCAGATACAGTGATAGGCTTAAAAG.................................................................................................................................................................................................................................................................26200.0511000000
.........................................................................................................................................................................................................................................................AGTCTT-----------------CCCACGATAAGT-G--AG......................................................21200.0511000000
................................................................................................................CTACTCCCTGCCAGGCCT......................................................................................................................................................................................................................18200.0511000000
......................................................................................................................................GAAGGCTTAAAAGAAAGGG...............................................................................................................................................................................................19200.0511000000
...........................................................CAAGCAGATACAGTGATAGGC........................................................................................................................................................................................................................................................................21200.0510100000
...................................................................................................................................TAAGAAGGCTTAAAAGAAAGG................................................................................................................................................................................................21200.0510000100
.......................................................................................................................................AAGGCTTAAAAGAAAGGGCTTTGCC-----AT.................................................................................................................................................................................27200.0511000000
.................................................................................TAAAAGACACCACAGCATGCTAGCAAGA...........................................................................................................................................................................................................................................28200.0511000000
..................................................................ATACAGTGATAGGCTTAAAAGACAC.............................................................................................................................................................................................................................................................25200.0510000100
.................................................................GATACAGTGATAGGCTTAAAAGA................................................................................................................................................................................................................................................................23200.0510000100
..........TCTGC-ATACAGTGGAAGAACAGAT-CC..................................................................................................................................................................................................................................................................................................................26200.0511000000
..........................AGAACAGAT-CTCAA------------GGCACACA...........................................................................................................................................................................................................................................................................................22200.0511000000
......................................................................................................................................................................................................................................................................................ATAAGT-G--AGAAGTTTGGTT----ATAT....................................23200.0510000100
....................AGTGGAAGAACAGAT-CTCAA------------GGCACA.............................................................................................................................................................................................................................................................................................26200.0510000010
....................................................................................................................................................................................................................................................................................CGATAAGT-G--AGAAGTTTGGTT----A.......................................22200.0511000000
....................................................................................................................................................................................................................................................................................CGATAAGT-G--AGAAGTTTGGTT----ATATTA..................................27200.0511000000
...................................................................................................GCTAGCAAGACGCCTACTCCCTGCCAG..........................................................................................................................................................................................................................27200.0511000000
..................................................................................................................................................................................TTGGACAGC------------T-T--TAAAGACCC...................................................................................................................................20200.0511000000
...................................................................TACAGTGATAGGCTTAAAAGACACCA...........................................................................................................................................................................................................................................................26200.0510000010
.....................................TCAA------------GGCACACAAGCAGATACAGTGC.............................................................................................................................................................................................................................................................................26200.0511000000
..................................................................................................TGCTAGCAAGACGCCTACTCCC................................................................................................................................................................................................................................22200.0511000000
.............GC-ATACAGTGGAAGAACAGA......................................................................................................................................................................................................................................................................................................................20200.0510000100
..................................T-CTCAA------------GGCACACAAGCAGATACAGT...............................................................................................................................................................................................................................................................................26200.0510000010
.....................GTGGAAGAACAGAT-CTCAA------------GGCACA.............................................................................................................................................................................................................................................................................................25200.0511000000
...........CTGC-ATACAGTGGAAGAACAGAT-CT..................................................................................................................................................................................................................................................................................................................25200.0510000100
...........................................................CAAGCAGATACAGTGATAGG.........................................................................................................................................................................................................................................................................20200.0511000000
.................................................................GATACAGTGATAGGCTTAAAAGACAA.............................................................................................................................................................................................................................................................26200.0510000100
.........................AAGAACAGAT-CTCAA------------GGCACA.............................................................................................................................................................................................................................................................................................21200.0510000100
...........CTGC-ATACAGTGGAAGAACAGAT-....................................................................................................................................................................................................................................................................................................................23200.0511000000
...........CTGC-ATACAGTGGAAGAACAG.......................................................................................................................................................................................................................................................................................................................21200.0510010000
..............................................................................................................................................................CC-----AAAA------CAATTGGACAGC------------T-T--TAAAGAC.....................................................................................................................................27200.0511000000
.........................................................................................................................................................................................................T--TAAAGACCCCCTCGAC----GTTTGA..................................................................................................................23200.0510000100
..................................................................................................................................................................................................................................................TGTTGTTAGTCTT-----------------CCCACGAT................................................................21200.0510000100
.........................................................................................................AAGACGCCTACTCCCTGCCAGGCCT......................................................................................................................................................................................................................25200.0511000000
..............................................................................................................................................................................................................................................................T-----------------CCCACGATAAGT-G--AGAAGTTTGGTT----........................................26200.0511000000
................................................................................................CATGCTAGCAAGACGCCTACTC..................................................................................................................................................................................................................................22200.0511000000
............................................................................................ACAGCATGCTAGCAAGACGCC.......................................................................................................................................................................................................................................21200.0510000100
.....................................................................CAGTGATAGGCTTAAAAGACA..............................................................................................................................................................................................................................................................21200.0510000010
............................................................................................ACAGCATGCTAGCAAGACGCCTACTCC.................................................................................................................................................................................................................................27200.0511000000
..GACCTTAATCTGC-ATACAGTGGAAG............................................................................................................................................................................................................................................................................................................................25200.0511000000
.....................................................................................................................................................................................................................................................................................GATAAGT-G--AGAAGTTTGGTT----AT......................................22200.0510000010
........................GAAGAACAGAT-CTCAA------------GG.................................................................................................................................................................................................................................................................................................18200.0510000010
..............C-ATACAGTGGAAGAACAGA......................................................................................................................................................................................................................................................................................................................19200.0510000100
.........................................................................................................................................................................................GC------------T-T--TAAAGACCCCCTCGAC----GTTTGAG---A----.........................................................................................................28200.0511000000
...................................................................................................................................................................................TGGACAGC------------T-T--TAAAGACCCCC.................................................................................................................................21200.0511000000
................................................................................................................................................................................................................................................................................CCCACGATAAGT-G--AGAAGTTTGGTT----........................................25200.0511000000
..................................................................................................................................................................................................................................................................................CACGATAAGT-G--AGAAGTTTGGTT----ATA.....................................26200.0510000100
.........................................................................................ACCACAGCATGCTAGCAAGA...........................................................................................................................................................................................................................................20200.0510000010
........................GAAGAACAGAT-CTCAA------------GGCAC..............................................................................................................................................................................................................................................................................................21200.0510000010
..............................................................................GCTTAAAAGACACCACAGCATGCTAGC...............................................................................................................................................................................................................................................27200.0511000000
.................................................................................................................................................................................ATTGGACAGC------------T-T--TAAAGA......................................................................................................................................18200.0510000010
................................................................................TTAAAAGACACCACAGCATGCTAGCAAT............................................................................................................................................................................................................................................28200.0511000000
....................................................................................................................................AAGAAGGCTTAAAAGAAAGGGCC.............................................................................................................................................................................................23200.0510100000
....................AGTGGAAGAACAGAT-CTCAA------------GG.................................................................................................................................................................................................................................................................................................22200.0510010000
................................................................................TTAAAAGACACCACAGCATGCTAGCAAG............................................................................................................................................................................................................................................28200.0511000000
.....................................................................................................................................................................................................................................................TGTTAGTCTT-----------------CCCACGATAAGT-G--AGA.....................................................26200.0511000000
...................................................................................................GCTAGCAAGACGCCTACTCCCTGCCA...........................................................................................................................................................................................................................26200.0511000000
..................................................................................................................................................................................................................................................................................CACGATAAGT-G--AGAAGTTTG...............................................20200.0510000100
........................................................................................................................................AGGCTTAAAAGAAAGGGCTTTGC.........................................................................................................................................................................................23200.0511000000
.............GC-ATACAGTGGAAGAACAGAT-....................................................................................................................................................................................................................................................................................................................21200.0510000100
.....................................................................................................................................................................................................................................................TGTTAGTCTT-----------------CCCACGATAAG.............................................................21200.0511000000
..GACCTTAATCTGC-ATACAGTGGAAGA...........................................................................................................................................................................................................................................................................................................................26200.0511000000
.......TAATCTGC-ATACAGTGGAAGAACAG.......................................................................................................................................................................................................................................................................................................................25200.0511000000
....................................................................................................................................................................................................................................................................................CGATAAGT-G--AGAAGTTTGGTT----ATAT....................................25200.0511000000
....................................................................................................................................................................................................................................................................................CGATAAGT-G--AGAAGTTTGGTT----ATA.....................................24200.0510000100
....................................................................ACAGTGATAGGCTTAAAAGAC...............................................................................................................................................................................................................................................................21200.0510000100
.......................................................................................ACACCACAGCATGCTAGCAAG............................................................................................................................................................................................................................................21200.0510000010
..................................T-CTCAA------------GGCACACAAGCAGA.....................................................................................................................................................................................................................................................................................20200.0511000000
............................................................................................ACAGCATGCTAGCAAGACGCCTA.....................................................................................................................................................................................................................................23200.0510000010
.......TAATCTGC-ATACAGTGGAAGAACAGAT-C...................................................................................................................................................................................................................................................................................................................28200.0510000001
..................................................................ATACAGTGATAGGCTTAAAAGACAT.............................................................................................................................................................................................................................................................25200.0511000000
.........................................................CACAAGCAGATACAGTGATAGGC........................................................................................................................................................................................................................................................................23200.0511000000
................................................................................TTAAAAGACACCACAGCATGCTAGCAAGA...........................................................................................................................................................................................................................................29200.0511000000
.................................................................................TAAAAGACACCACAGCATGCTAGCAAG............................................................................................................................................................................................................................................27200.0511000000
............................................................................................................................................TTAAAAGAAAGGGCTTTGCC-----AAAA------CAAT.....................................................................................................................................................................28200.0511000000
.......................................................................................................................................AAGGCTTAAAAGAAAGGGCTTTGCC-----AA.................................................................................................................................................................................27200.0511000000
..........TCTGC-ATACAGTGGAAGAACAGAT-CAT.................................................................................................................................................................................................................................................................................................................27200.0511000000
......................................CAA------------GGCACACAAGCAGATACAGTGA.............................................................................................................................................................................................................................................................................25200.0511000000
..............................................................GCAGATACAGTGATAGGCTTAAAA..................................................................................................................................................................................................................................................................24200.0510000100
.......................................................CACACAAGCAGATACAGTGAT............................................................................................................................................................................................................................................................................21200.0511000000
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCG..............................................................................................................................21200.0511000000
.................................................................................TAAAAGACACCACAGCATGCTAGCA..............................................................................................................................................................................................................................................25200.0511000000
..............................................................................GCTTAAAAGACACCACAGC.......................................................................................................................................................................................................................................................19200.0511000000
.........ATCTGC-ATACAGTGGAAGAA..........................................................................................................................................................................................................................................................................................................................20200.0510000100
.................................................................................................ATGCTAGCAAGACGCCTACTCCC................................................................................................................................................................................................................................23200.0511000000
................................................................................TTAAAAGACACCACAGCATGCTAGCAT.............................................................................................................................................................................................................................................27200.0511000000
........................................................................................................................................................................................AGC------------T-T--TAAAGACCCCCTCGAC----GTT.....................................................................................................................24200.0510001000
............TGC-ATACAGTGGAAGAACAGAT-CTCA................................................................................................................................................................................................................................................................................................................26200.0511000000
..........TCTGC-ATACAGTGGAAGAACAGAT-A...................................................................................................................................................................................................................................................................................................................25200.0510000100
...................................................................................................................................................AAAGGGCTTTGCC-----AAAA------CAATTGGACA...............................................................................................................................................................27200.0510000010
..................ACAGTGGAAGAACAGAT-CTCAA------------GGCA...............................................................................................................................................................................................................................................................................................26200.0510000100
...................................................................TACAGTGATAGGCTTAAAAGAC...............................................................................................................................................................................................................................................................22200.0510100000
......................................................................................................................................................................................ACAGC------------T-T--TAAAGACCCCCTCGA.............................................................................................................................22200.0511000000
..................................................................................................................................CTAAGAAGGCTTAAAAGAAAGGGCT.............................................................................................................................................................................................25200.0510000100
..............C-ATACAGTGGAAGAACAGAT-CTCA................................................................................................................................................................................................................................................................................................................24200.0510000100
...ACCTTAATCTGC-ATACAGT.................................................................................................................................................................................................................................................................................................................................19200.0511000000
..................................................................................................TGCTAGCAAGACGCCTACTCCCTGCCA...........................................................................................................................................................................................................................27200.0511000000
.......................................................................................................................................................................................................................................................TTAGTCTT-----------------CCCACGATAAGT-...........................................................20200.0510000010
.................................................................................................................................TCTAAGAAGGCTTAAAAGAAAGGGCTTT...........................................................................................................................................................................................28200.0511000000
.................................................................................................................................................................................ATTGGACAGC------------T-T--TAAAGACCCCCTC...............................................................................................................................25200.0511000000
........................................................................................................................................................................................AGC------------T-T--TAAAGACCCCCTCGA.............................................................................................................................20200.0510000100
.............................ACAGAT-CTCAA------------GGCACACAAGCAG......................................................................................................................................................................................................................................................................................24200.0511000000
......................................................................................................................................................................AAA------CAATTGGACAGC------------T-T--TAAAGACCCC..................................................................................................................................27200.0511000000
.......................................................................................................................................................................................CAGC------------T-T--TAAAGACCCCCTCGAC----GTT.....................................................................................................................25200.0511000000
.....................................................GGCACACAAGCAGATACAGTGATAGGCT.......................................................................................................................................................................................................................................................................28200.0511000000
........................................................................................................................................................................A------CAATTGGACAGC------------T-T--TAAAG.......................................................................................................................................20200.0510000100
..............................................................................................................................................................................................................................................................T-----------------CCCACGATAAGT-G--AGAAGTTTGGT.............................................25200.0511000000
..................................................................................................................................CTAAGAAGGCTTAAAAGAAAGGGCTT............................................................................................................................................................................................26200.0510000100
...............................................................................................................................................................C-----AAAA------CAATTGGACAGC------------T-T--TAAAGAC.....................................................................................................................................26200.0511000000
.............................................................................................................................................TAAAAGAAAGGGCTTTGCC-----AAAA------CAATT....................................................................................................................................................................28200.0510000100
...................................................................TACAGTGATAGGCTTAAAAGACACCACA.........................................................................................................................................................................................................................................................28200.0511000000
...............................................................................CTTAAAAGACACCACAGCATGCTAGCAA.............................................................................................................................................................................................................................................28200.0511000000
.............................................................AGCAGATACAGTGATAGGCTTAAAAT.................................................................................................................................................................................................................................................................26200.0510000100
...........................................................CAAGCAGATACAGTGATAGGCTTA.....................................................................................................................................................................................................................................................................24200.0510000001
.....................................................................................................................................................................................................................................................................................GATAAGT-G--AGAAGTTTGGTT----........................................20200.0510000100
.......TAATCTGC-ATACAGTGGAAGAACAGA......................................................................................................................................................................................................................................................................................................................26200.0511000000

Generated: 05/17/2015 at 10:56 PM