ID:

dmo_698

 Coordinate:

scaffold_6473:7741201-7741351 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.9 -52.8 -52.7

Flybase annnotation

CDS [Dmoj\GI14944-cds]; exon [dmoj_GLEANR_15722:1]; intron [Dmoj\GI14944-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6183:289-311 -
  2. scaffold_6308:2477626-2477648 -
  3. scaffold_6328:458931-458953 -
  4. scaffold_6359:2442209-2442231 -
  5. scaffold_6473:3535581-3535603 -
  6. dmo_698  scaffold_6473:7741208-7741230 -
  7. scaffold_6473:10781914-10781936 -
  8. scaffold_6482:681743-681765 -
  9. scaffold_6496:9144923-9144945 -
  10. scaffold_6496:15154007-15154029 -
  11. scaffold_6496:18320422-18320444 -
  12. scaffold_6496:21732702-21732724 -
  13. scaffold_6496:24254048-24254070 -
  14. scaffold_6498:1309016-1309038 -
  15. scaffold_6654:1315483-1315505 -
  16. scaffold_6680:10184064-10184086 -
  17. scaffold_6680:10723836-10723858 -
  18. scaffold_6680:12879767-12879789 -
  19. scaffold_6680:21178925-21178947 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCACAACCACAACAACAACAACAACAGCAGCAGCAAGTTGGCGTGCCAGGGTAAACCGATGTACATATGTATGTATGGCAGAGTACATATGTATGTACATACGGTCCTGTGAATGTGACACCTACGCAACGCGAAGCGCATTAAAGTGCGAACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCCGCCAACACAGCAGCCCAACTCCAATCAGTAGCGCGTCACACGCACGCGCC
**************************************************....((((((((((((((((((((((......)))))))))))))))))).)))).(((((..((((.......))))........(((((....)))))..))))).....((.((.((.((.((.((....)).)).)).)).)).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
......................................................................................................................................................................................................................CCCAACTGCACTCCGTAGCG................. 20 3 3 0.67 2 1 1 0
............................................................................................................................................................................................................AACACAGCAGGCTGACTCCA........................... 20 3 7 0.14 1 1 0 0
...........................................................................................................................................................................GCAGCAGCAGCAGCGGCAGCAGC......................................................... 23 0 20 0.10 2 0 0 2
........................................................................................................................................................................GCAGCAGCAGCAGCAGCGGCA.............................................................. 21 0 20 0.10 2 0 0 2
......................................................................ATATTTGGCAGAGTACAT................................................................................................................................................................... 18 2 14 0.07 1 0 1 0
..........................................................................................................................................................................AGCAGCAGCAGCAGCGGC............................................................... 18 0 20 0.05 1 0 0 1
............................................................................................................................................................................CAGCAGCAGCAGCGGCAGCAGCAGCA..................................................... 26 0 20 0.05 1 0 0 1

Anti-sense strand reads

GGTGTTGGTGTTGTTGTTGTTGTTGTCGTCGTCGTTCAACCGCACGGTCCCATTTGGCTACATGTATACATACATACCGTCTCATGTATACATACATGTATGCCAGGACACTTACACTGTGGATGCGTTGCGCTTCGCGTAATTTCACGCTTGTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCCGTCGTCGTCGTCGGCGGTTGTGTCGTCGGGTTGAGGTTAGTCATCGCGCAGTGTGCGTGCGCGG
**************************************************....((((((((((((((((((((((......)))))))))))))))))).)))).(((((..((((.......))))........(((((....)))))..))))).....((.((.((.((.((.((....)).)).)).)).)).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
 V056
head
 M060
embryo
 V110
male body
.................................................................................................GTATGCCAGGACACTTACACTG.................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
................................TGTTCTATCGCACGGTCCCA....................................................................................................................................................................................................... 20 3 1 1.00 1 0 1 0 0 0
......................................................................................TCTCCATACAGGTATGCCAGG................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................CGTCGTCGTCGTCGTCGTCGTC................................................................... 22 0 20 0.10 2 0 0 0 2 0
......................................................................................................................................TCGCGGACTTTCATGCTTG.................................................................................................. 19 3 20 0.10 2 0 0 0 0 2
..TGTTGGTGTTGTTGTTGTTG..................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1
.......................................................................................................................................................................TCGTCGTCGTCGTCGTCGCCGTC............................................................. 23 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:7741151-7741401 - dmo_698 CCACAACCAC------------AACAACAACAACAACAGCAGCAGCAAGT-------------------------------------------TGGCGTGCCA---------------------------------------------------------------------GGG-------------------------------------------------------------------------TAAA---CCGATGTACATATG-TATGTA---TGGCAGA-------GTACATATGTATGTACATACGGTCCTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AACACAGCAGCAGC------AG---------CAGC------------AGCAG-------------------------CAG-------CAGCAGCGGCAG------------CAGCAG------CAGCCG---------C-----------------------------------CAACACAGCAGC----CCA-----ACTCCAATC------------------AGT----AGCGCGTCAC---------------------------ACGCACGCGCC
droVir3 scaffold_12970:3296887-3297132 - TAACGTTTGG------------AACAACAAAAACAGCAATCGTAAAAAGTGAA-------------GTGTGTACATATGTGTAGGCAACGAATTGGCTTGCCA---------------------------------------------------------------------GCG-------------------------------------------------------------------------TATA---CCGATGTACATAAC-TATGTA---TGCTTCT-------GTACATATGTATGTACATACGGTATTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AA--------C------------------------AGC-----------------------------------------------------------------------------AG------AAGCCG---------C-----------------------------------CAACACAGCAGC-CGCCCA-----ACTCCAATC------------------AGA----AGCACGTCAC---------------------------ACGCACGCGCA
droGri2 scaffold_15203:10571150-10571389 + GAAGAAGAAT------------AACAACAACAACAACTGAAGTGTTGTA--------------------CATACATATGTGCAGTGAACGAATTTTCTTGCCG---------------------------------------------------------------------ACG-------------------------------------------------------------------------TATACAGCCGATGTACATATG-TATGTA---TGTGCCA-------GTACATATGTATGTACATACGGTCTTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AACACA------G-----------------------------------------------------------------------------------TA------------------G---------------------C-----------------------------------CAAAACAGCAGC----CCAAAAAAACTTCAGCT------------------AGA----AGCGCGTCAC---------------------------ACGCACGCGCC
droWil2 scf2_1100000004909:11886567-11886836 - CAGCAGCAAC------------AACAACAACAGCAACAGCAGCAGCAAGT-------------------------------------------T---GT------AG-----ATC-------AGGC----GGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAGCGTCAGGTGCAACAGCAACAACAGGCG---TTGGCCCAACAAATACTCCATGTGGCACCAAATACAT------------------------------------TC---------------ATCACCTCGCAGCAGC----------------------------AGC---------AACAGCAGCAGCAAC-----------------------------------AACA------------GCAGCAA---CAA------CAA---CAGCAG---------C--AGCAGCAAC----AAT-----------------------TGCAAA------ATCA-A--------------TT-----ACTGCA-ACAACAACTCCAA---------GCTCAA-----GTGCAAGCCCAGGCTCAGGCCCAGGCACAGGCC
dp5 4_group2:111020-111246 + GCGCAACCGC------------AATCGCCAAAACATGAGCAGCAGGCACA----------------------------------------------AG---------------CC---------------------------------------------------------------------ATACCA---------------AATCCCTATGA--------------TTC-ATCATATTATTCTGTTTAC-----------------------------------------------------------GACGAC--GATATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAGGGACA---------------------TTGAGTATCAACAACAACAGCAAGAC------CATCAGG----------------------------AGC------A---GCAGCAGC------------------------------------AGCAG-------CAGCAGCAG-CAG------CA------GCCGCA---GCAA---------C--AGCAGCAA-------T---------------ATC-----AACAA--------------------------------CC------------------AGC----AGTACGCCAC---------------------------CAGCAGACGCA
droPer2 scaffold_82:107536-107783 - CAACAACAAC------------AACAACAACAGCAGCAGCCGCCGCAAGT-------------------------------------------TCGTA------CCTATGGAACG-------ATGAAG-------------------GTGCCCTCGTCGC-----------------C-------------------------------------------------GGTGGCAAGCAATGCCCCACTGCTAG-----------------------------------------------------------AGCGGA--AGAACAGT--CAACAAGGAGG------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------CCACAGGAGCAGCAGCAG------CAGCAGC----------------------------AGC---------AGCAGCAGCAGCAGT-----------------------------------AACAGCG---------GCAG------CAA------CAG---CAGCAG---------C--AGCAGCAAC----AGC-----------------------AGCAGC----------------AAC-----AACT------------------ACCTCAACGG----CGAGCATA---------------------------ACAGCGACGCC
droAna3 scaffold_12929:1886766-1886963 + CAGCAGCAAC------------AGCAACTGCAGCAGCAGCAGCAGG-------------------------------------------------------------------CCAAGATGG--------------------------------------------TTGACATGA----------AACCG--------------------------------------------------------------------ATGTTCTTGGGC------CCAGTTCTCAAGACAGAGGTCCT--------GCAAGCGCCCA--TGCACAGT--------------------------------------------------------CCTGCCCAGC----------------------------------------------------------------------------------------ACCAGCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATCA-----------------------GCAGCAACAGCAG------------CAGCAG---------G--C-------------------------GCAGC-----------------------A-G-------------------CAA----CTG--AT----------------GAGCTCC---------------------------CCGCA-----C
droBip1 scf7180000396708:3307487-3307723 - CAACACCCGC------------AACAACAGCAACAACCGCAGCAGCAACCGCA-------------------------------------------GG--------------ACTATTACGG--------------------------------------------CAAATACGA----------TATTG---------------AATT-CGCCAA------------------CTCACCACAC---------------------------------------------------------------------------------------------------------------------------------------------------CACAAGCAGGCGCTGCACGGCGAAT---------------------------ATCTAAGTC-----CCAAAC-------------------------------------------------------------------------------------------------------------------CAAATGCTGCCGGTTTTCACCA---------AAATAGT------CAAC---AACA-------------------------GC---AGCAA-------------------------------------------------------CAGCA----GCAG------CA------------------ACACGAGCAGCAG------------------------------------------------------------TTCT-----ACTACAACT-------ACAACGACTCCAACGGT-AGT------------------------------------GCGTACATG
droKik1 scf7180000302475:2102473-2102715 + CCGCATCCGC------------AGCAGCAGCAGCAACAGCCGCAGGTGCA----------------------------------------------TC------CCTATCAGGCC-------ATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGC---------------------------------------------------------------------------------------------------ACCAGCATCAGCAG---CAGCAGCAGCATCAGGCGGCAGTGTTCCACCAG------CAAGTGGCAGC------------------------------------CATTGCCGC------------------------CCAACAGC----------------------------AGC------A---GCAGCAGG------------------------------------CGCAA-------CAGCAACAG-CAG------CA------GGCGCA---GCAA---------C--ATCAGCAG-------C---------------AAA-----TGCAAC------AGCA-GTTCCACT-----A---------------------------------------CCAA-----------GCCCAAGCTCAGGCTCAGGCCCAGGCC
droFic1 scf7180000454107:1237488-1237736 - CCCCAACTACC-----------AGCAGCAGCAACATCAGCAGCAGCAACCGG------------------------------------------------------------GCCAAC---------------------AAAGATCTCACTCGCCGCACCATGGGATTAACAGGA----------CATTG---------------AGTC-C----------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGCAGCGCAGGAAGT------------------------------------------CACCC---CTGTTGCAGCCCCACCAC---------------------------------------------------------------------------------------------------------------CTGCA---------ACTG------CACCAGC---AGCA-------------------------GC---AA------------CAACTGC------------AGCAGCAGCACCAGCTGCAC-------CAGCAA-------------------------------------------CTG---------C-----------------------------------AGATGCAGCAGC-----------------------TGCA-ACAGCAACACCAGCAGC---TGCAGCAA---------------------------CAGACCACGCC
droEle1 scf7180000491215:148775-149025 - CAGCAGCAAC------------AACAACAACAACAACAACCGCTGATGAT----------------------------------------------------------------------GG--------------------------------------------CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAAGGACATTAA---CTTGCCCAC--ATCGCCACCTTTGCCGCCCAGTTTGTTCAAGGCCTTTACGCCCAGCACAACGCCTTCTCCC--CCAGCAACAGTGGCGG------------------------TAAAACCCA--------A---AC------------------------AGCAGCAGCAGCATCAGCAGCAGCAGCAGCCGCAT-------CATCAT----------------------------CAGCAA---------A--C-------------------------GCCGCAGCAACAT-----C---------A-A-------------------GTT------------------GT----GGCACAGCAAACCCA------------------------AGCTAAAAC
droRho1 scf7180000779186:13122-13310 - CAGCAACAAC------------AACGGCAGCAACGGC---------GAAATAA-------------------------------------------AGTGCCA---------------------------------------------------------------------GGAAACACATTTA-------------------------AT---------------AT-----------------------------------------------CTACGCATAAAAATAAAAGTCTG--------GCAGCCGGCAA--T-----------------------------------------------------GGAAGTGAC---------------------------CAAACGA--------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CA------------CGACAGCGGCAGCAGCAGCAGCGGCAGCGGC---AGCGG-------CAG-------CAG------CA---------------ACA-------------------------------------GCACAGCAGCAACAT-----C---------A-G-------------------CA---------------------------------------------------------------CGGCAGCAAC
droBia1 scf7180000302126:557936-558160 + TCACATCAGC------------AGCGGCAACAGCAACAGCAACAGCAACGGCA-------------------------------------------ACAGC--------------------------------------AACGG----------------------CAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGAGGCAGCAATAT--GGCCAC------CAGTCGGTAGG------------------------------------GAATGGCTACCAGCAGCAGCAGCAGCGC------TACCG----------CAATGCCCAGAATGCCTACCAGC---------AGTACCAGC---------------------AT------------CAG----------CACCAG----CA------CCA------------------GCAGCAGCAGCAG---------CAGCAGCAGCATCACGCCCAGCA--------------------------------------------------------------------------GCTGCAC---------------------------CCGCACCAGCA
droTak1 scf7180000414393:168352-168591 - CCTCAACCACC-----------ACCATCAGCAGCAGCAGCAGCAGG---CGAA-------------------------------------------TG--------------GCT-------ATGCTAATGGCACCGCCAATGG--------------------------------------------------------------CTA-C----------------GGCTACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAAGTGCAATCCACGACAAACGCTTCACCACAGCACGCTTCCAACAACCA--------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAACA----------------GCAGCAGC---------AGCAGCAGC------------------------------ACCACCAGCAG-------CAG-------CAG------CAA---------------CAG---------A--T-------------------------GCCGC--------------------AGCA-GCACCACA-----ACTCCGTTT------------------TGA----A--CGGTCAC---------------------------CCAAACGGGCT
droEug1 scf7180000409522:211146-211408 + CAACAT--AC------------AGCAACATGAGCAACAGCAGCAACAATGT------------------------------------------TCGACAGCTGG--------GGGATG---------------------GATGG---------TCGCT-----GGATGGATGGGA----------CATGGACCTGGACATGGACATGCACCTCTCCTTCTCCTCTTGCTTTGCAACCAAAAA--------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------CCACTC-----------------------------------------------------------------------------CGAGGCAGCCAATCAAT------------------------------------TTGTG----------------------------------------------------CAGCCACAGCAACAGCAACAGCAGCAA----------------------------------------------CAG-------CAA------CAGCAGCAACAGCAGCAGCCA---------A--ATCAGCA---------------------AATAGCCT-----CAAC---------A-A-------------------CTT------------------GT----CGAAAATCAA---------------------------AT-GATGTGCC
dm3 chr3L:6743823-6744072 - CAGCAGCAACAACTGCACATGGAGCAACAGCAGCAGCAGCAGCAGCAAT---A-------------------------------------------TGTGCA--------------------------------------------------------GC-----------------ATCAGCCG-------------------------CAGCAA------------------CCCGCCATCCAGCATACACAGCAGATTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGCCATTGTGCAGCAT-------------------------------------------ATGCAGCAGC---------AGAAGAAGCAGCAGC-----------------------------------AAGTGCT---------GCAG------CAA------CAG---CAGCAG---------C--AGCAGCAAC----AGT-----------------------ATCAAC---------A-A-------------------CAC----------GCACCCGCCTAC---CAAGTGCAA---------------------------TC-GTCTCCCC
droSim2 2r:17449457-17449739 + CCACCGCCGC------------AGCAGCAACAACAACAGCAGCAGCAACAGCA-------------------------------------------GGCGCC--------------------------------------------------------GC-----------------CACAGTCA-------------------------CG---------------AGTTGCGCCCGGAGAACTGCATCTGC-----------------------------------------------------------AGCGGA--TGAATAGTTTCGGCCAGGACGGACAATTTCACTTTGAGT--------------------------------------------------------------------------------------------------CCAATC-------------------------------------------------------------------------------------------------------------------CGGCAGCTGGTGCCTATCAGCAGCATCAACTGATCAGCCAGTATCA----------------------------------GC---AA------------CAACAAC------------AGC------------AGCAG-------CAACAACAG-CA------GCA------------------GCCCCAGCAGCAG---------CAACAACATCATCTCGCCCAACAGCAGCAG-----C---------A-G-------------------CAT----ATG--AG----------------GAGTCA-------------------------------CACGCCCC
droSec2 scaffold_9:222920-223187 + CCACCGCCGC------------AGCAGCAACAACAACAGCAGCAGCAACAGCA-------------------------------------------GGCGCC--------------------------------------------------------GC-----------------CACAGTCA-------------------------CG---------------AGTTGCGCCCGGAGAACTACATCTGC-----------------------------------------------------------AGCGGA--TGAATAGCTTCGGCCAGGACGGACAATTTAACTTTGAGT--------------------------------------------------------------------------------------------------CCAATC-------------------------------------------------------------------------------------------------------------------CGGCAGCTGGTGCCTATCAGCAGCATCAACTGATCAGCCAGTATCA----------------------------------GC---AACAA-------------------------------------------------------CAGCAG----CA------GCA------------------GCCGCAGCAGCAG---------CAACAACATCATCTCGCCCAACAGCAGCAG-----C---------A-G-------------------CAT----ATG--AG----------------AAGTCA-------------------------------CACGCCCC
droYak3 X:8109354-8109615 + CAACAGCAAC------------AACAACAGAAGCAACAGCAACAGCGTT-GCAGTCGCCCGAACAATGTTATGCATATATTTAATTGATAAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------GCACATGAT--AAATTTTAATATTGTGTGGCAGAGGAACATGCTACTCTGA---------CACAAGC------AGCGCACAAAAAC--------------------------------------------------------GG----------------------------------------------------------------------------------------------------------CCACTG--------ATG----------------------------------------------------CAGCAACAGCAACAGCAA------------C---------------AT-------------------------CA-------GCAGCAACAGCAG------------CAGCAG------CAACAT---------CAACAACAGCAT-----------------------------------T----CAG-------CC------------------A--CCTGTAGCTGGGGCAACAT---------------------------AAGCCGACATA
droEre2 scaffold_4770:17358161-17358426 + CCGCAATGCC------------AGCTGCAACAGG--CAGTGTCATCAATT-------------------------------------------TGGCG------CTGCCGG-GACAGAGCA-GCGATG-------------------TACTCTATGCCAC-----------------C-------------------------------------------------AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCACATAACGTTGCCGACGCCAACCGCAGGGCCACAG-----TTCCATCAGCCAAAG--CCAGAGCCAGCGGCATTAG---------------------------------------------------------------------------------------------------GTG----------------------------------------------------CAGCAGCAGCAGCAGTAA---------CAGC------------------------------AGCAG-------CAG-------CAG------CAACGGCAACTGCA---GCAA---------C--CCCAGCAG-------G---------------AGC-----AACAAC---------A-A-------------------CAT----------------TGGTCG------CTGTCAGCTCA-----------------G----CCGGAAATACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCACAACCAC------------AACAACAACAACAACAGCAGCAGCAAGT-------------------------------------------TGGCGTGCCA---------------------------------------------------------------------GGG-------------------------------------------------------------------------TAAA---CCGATGTACATATG-TATGTA---TGGCAGA-------GTACATATGTATGTACATACGGTCCTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AACACAGCAGCAGC------AG---------CAGC------------AGCAG-------------------------CAG-------CAGCAGCGGCAG------------CAGCAG------CAGCCG---------C-----------------------------------CAACACAGCAGC----CCA-----ACTCCAATC------------------AGT----AGCGCGTCAC---------------------------ACGCACGCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-------------------------CAG-------CAGCAGCGGCAG------------CAGC.....................................................................................................................................................................23200.102000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------AGCAG-------------------------CAG-------CAGCAGCGGCA......................................................................................................................................................................................21200.102000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-------------------------CAG-------CAGCAGCGGC.......................................................................................................................................................................................18200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------------------------CAG-------CAGCAGCGGCAG------------CAGCAG------CA...........................................................................................................................................................26200.051000010
droVir3
TAACGTTTGG------------AACAACAAAAACAGCAATCGTAAAAAGTGAA-------------GTGTGTACATATGTGTAGGCAACGAATTGGCTTGCCA---------------------------------------------------------------------GCG-------------------------------------------------------------------------TATA---CCGATGTACATAAC-TATGTA---TGCTTCT-------GTACATATGTATGTACATACGGTATTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AA--------C------------------------AGC-----------------------------------------------------------------------------AG------AAGCCG---------C-----------------------------------CAACACAGCAGC-CGCCCA-----ACTCCAATC------------------AGA----AGCACGTCAC---------------------------ACGCACGCGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
GAAGAAGAAT------------AACAACAACAACAACTGAAGTGTTGTA--------------------CATACATATGTGCAGTGAACGAATTTTCTTGCCG---------------------------------------------------------------------ACG-------------------------------------------------------------------------TATACAGCCGATGTACATATG-TATGTA---TGTGCCA-------GTACATATGTATGTACATACGGTCTTGT-----------------------------------------------------GAATGTGACACCTACGCAACGCGA------AGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTGCG---AACACA------G-----------------------------------------------------------------------------------TA------------------G---------------------C-----------------------------------CAAAACAGCAGC----CCAAAAAAACTTCAGCT------------------AGA----AGCGCGTCAC---------------------------ACGCACGCGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAGCAGCAAC------------AACAACAACAGCAACAGCAGCAGCAAGT-------------------------------------------T---GT------AG-----ATC-------AGGC----GGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAGCGTCAGGTGCAACAGCAACAACAGGCG---TTGGCCCAACAAATACTCCATGTGGCACCAAATACAT------------------------------------TC---------------ATCACCTCGCAGCAGC----------------------------AGC---------AACAGCAGCAGCAAC-----------------------------------AACA------------GCAGCAA---CAA------CAA---CAGCAG---------C--AGCAGCAAC----AAT-----------------------TGCAAA------ATCA-A--------------TT-----ACTGCA-ACAACAACTCCAA---------GCTCAA-----GTGCAAGCCCAGGCTCAGGCCCAGGCACAGGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGTCAGGTGCAACAGCAACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------TT-----ACTGCA-ACAACAACTCC.......................................................2011.00100010
..................................................................................................T------AG-----ATC-------AGGC----GGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAA---------GCTCAA-----GTGCAAGCCCAGGCT..................2611.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCAACAAATACTCCATGTGGC............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.......................................CAGCAGCAAGT-------------------------------------------T---GT------AG-----ATC-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----AAT-----------------------TGCAAA------ATCA-A--------------TT-----ACTGCA-..................................................................2511.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA---CAA------CAA---CAGCA....................................................................................................................................................................18200.15300030
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------------------AGC---------AACAGCAGCAGCAAC-----------------------------------AACA------------GC................................................................................................................................................................................................27100.10101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------------AGC---------AACAGCAGCA..........................................................................................................................................................................................................................................................19200.10200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AACAGCAGCAGCAAC-----------------------------------AACA------------..................................................................................................................................................................................................22200.10200002
...........................CAACAGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAAC-----------------------------------AAC...............................................................................................................................................................................................................18200.10200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC----------------------------AGC---------AACAGCAGCAGC........................................................................................................................................................................................................................................................20200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC-----------------------------------AACA------------GCAG..............................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------------------------AACA------------GCAGCAA---CA......................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAAC-----------------------------------AACA------------GCAGCA............................................................................................................................................................................................25200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------GCAGCAA---CAA------CAA---CAGCA....................................................................................................................................................................21200.05100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------AACA------------GCAGCAA---CAA------CAA---CAGCAG---------C--.......................................................................................................................................................25200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAAC-----------------------------------AACA------------GCAGCA............................................................................................................................................................................................24200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAA---CAA------CAA---CAGCAG---------..........................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAA------CAA---CAGCAG---------C--AGCAGCA................................................................................................................................................24200.05100010
.......................ACAACAACAGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----------------------------------AACA------------GCAGCAA---CAA------CAA---C........................................................................................................................................................................22200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---CAA------CAA---CAGCAG---------C--AGCAGC.................................................................................................................................................24200.05100100
dp5
GCGCAACCGC------------AATCGCCAAAACATGAGCAGCAGGCACA----------------------------------------------AG---------------CC---------------------------------------------------------------------ATACCA---------------AATCCCTATGA--------------TTC-ATCATATTATTCTGTTTAC-----------------------------------------------------------GACGAC--GATATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAGGGACA---------------------TTGAGTATCAACAACAACAGCAAGAC------CATCAGG----------------------------AGC------A---GCAGCAGC------------------------------------AGCAG-------CAGCAGCAG-CAG------CA------GCCGCA---GCAA---------C--AGCAGCAA-------T---------------ATC-----AACAA--------------------------------CC------------------AGC----AGTACGCCAC---------------------------CAGCAGACGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-------T---------------ATC-----AACAA--------------------------------CC------------------AGC----AGTACGC.........................................2611.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAG------CA------GCCGCA---GCAA---------C--AGCAGCAA-------T---------------ATC-----................................................................................................................2911.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------------------------------AGCAG-------CAGCAGCAG-.................................................................................................................................................................................................19200.1530300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGG----------------------------AGC------A---GCAGCAGC------------------------------------AGCAG-------C..........................................................................................................................................................................................................2370.1410010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGC------------------------------------AGCAG-------CAGCAG.....................................................................................................................................................................................................20200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG-CAG------CA------GCCGCA---GCA....................................................................................................................................................................21200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------A---GCAGCAGC------------------------------------AGCAG-------CAGCAGCAG-C................................................................................................................................................................................................25200.0510010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CAGCAGCAG-CAG------CA------GCCG............................................................................................................................................................................19200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG----------------------------AGC------A---GCAGCAGC------------------------------------AGCAG-------C..........................................................................................................................................................................................................21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-------CAGCAGCAG-CAG------CA------GCCGC...........................................................................................................................................................................23200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGG----------------------------AGC------A---GCAGC..............................................................................................................................................................................................................................................................15200.0510000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-CAG------CA------GCCGCA---GCA....................................................................................................................................................................19200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CAGCAGCAG-CAG------CA------GCCGC...........................................................................................................................................................................20200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG----------------------------AGC------A---GCAGCAGC------------------------------------AGCA...................................................................................................................................................................................................................18200.0510100000000
droPer2
CAACAACAAC------------AACAACAACAGCAGCAGCCGCCGCAAGT-------------------------------------------TCGTA------CCTATGGAACG-------ATGAAG-------------------GTGCCCTCGTCGC-----------------C-------------------------------------------------GGTGGCAAGCAATGCCCCACTGCTAG-----------------------------------------------------------AGCGGA--AGAACAGT--CAACAAGGAGG------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------CCACAGGAGCAGCAGCAG------CAGCAGC----------------------------AGC---------AGCAGCAGCAGCAGT-----------------------------------AACAGCG---------GCAG------CAA------CAG---CAGCAG---------C--AGCAGCAAC----AGC-----------------------AGCAGC----------------AAC-----AACT------------------ACCTCAACGG----CGAGCATA---------------------------ACAGCGACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................AATGCCCCACTGCTAG-----------------------------------------------------------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
...........................................CGCAAGT-------------------------------------------TCGTA------CCTATGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..........................................................................................................................................................................................................................................................................................................................................CAACAAGGAGG------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------CCACAGGA...................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................CGCAAGT-------------------------------------------TCGTA------CCTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................A------CCTATGGAACG-------ATGAAG-------------------GTGCCCTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000
.....................................................................................................................................................................................................................................TGGCAAGCAATGCCCCACTGCTAG-----------------------------------------------------------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGT-----------------------------------AACAGCG---------GC................................................................................................................................................................................................2011.001001000
.................................................................................................................................................................................................................................................................................................................................GAACAGT--CAACAAGGAGG------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------C..........................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................ACAACAACAGCAGCAGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGC----------------------------AGC---------AGCAGCAGCAG.........................................................................................................................................................................................................................................................22200.051010000
droAna3
CAGCAGCAAC------------AGCAACTGCAGCAGCAGCAGCAGG-------------------------------------------------------------------CCAAGATGG--------------------------------------------TTGACATGA----------AACCG--------------------------------------------------------------------ATGTTCTTGGGC------CCAGTTCTCAAGACAGAGGTCCT--------GCAAGCGCCCA--TGCACAGT--------------------------------------------------------CCTGCCCAGC----------------------------------------------------------------------------------------ACCAGCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATCA-----------------------GCAGCAACAGCAG------------CAGCAG---------G--C-------------------------GCAGC-----------------------A-G-------------------CAA----CTG--AT----------------GAGCTCC---------------------------CCGCA-----CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG------------CAGCAG---------G--C-------------------------.............................................................................................................................2180.131010000
......................................................................................................................................................................................................................................................................................................................................................................................................CAGC----------------------------------------------------------------------------------------ACCAGCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGC....................................................................................................................................................................................................................................................................2580.131100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------ATCA-----------------------GCAGCAACAGCAG------------CAGC.....................................................................................................................................................................22100.101100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------CAGCAG---------G--C-------------------------GCAGC-----------------------A-...............................................................................................19100.101001000
.........................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------ACCAGCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCA...................................................................................................................................................................................................................................................................23200.051000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATCA-----------------------GCA...............................................................................................................................................................................................19200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------------------------------------------------------------------------------ACCAGCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------A......................................................................................................................................................................................................................................................................22200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATCA-----------------------GCA...............................................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATC..........................................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG---CAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------AGCAG------------C------------------------ATC..........................................................................................................................................................................................................................23200.051010000
droBip1
CAACACCCGC------------AACAACAGCAACAACCGCAGCAGCAACCGCA-------------------------------------------GG--------------ACTATTACGG--------------------------------------------CAAATACGA----------TATTG---------------AATT-CGCCAA------------------CTCACCACAC---------------------------------------------------------------------------------------------------------------------------------------------------CACAAGCAGGCGCTGCACGGCGAAT---------------------------ATCTAAGTC-----CCAAAC-------------------------------------------------------------------------------------------------------------------CAAATGCTGCCGGTTTTCACCA---------AAATAGT------CAAC---AACA-------------------------GC---AGCAA-------------------------------------------------------CAGCA----GCAG------CA------------------ACACGAGCAGCAG------------------------------------------------------------TTCT-----ACTACAACT-------ACAACGACTCCAACGGT-AGT------------------------------------GCGTACATGSizeHit CountTotal NormTotal
No Reads
droKik1
CCGCATCCGC------------AGCAGCAGCAGCAACAGCCGCAGGTGCA----------------------------------------------TC------CCTATCAGGCC-------ATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGC---------------------------------------------------------------------------------------------------ACCAGCATCAGCAG---CAGCAGCAGCATCAGGCGGCAGTGTTCCACCAG------CAAGTGGCAGC------------------------------------CATTGCCGC------------------------CCAACAGC----------------------------AGC------A---GCAGCAGG------------------------------------CGCAA-------CAGCAACAG-CAG------CA------GGCGCA---GCAA---------C--ATCAGCAG-------C---------------AAA-----TGCAAC------AGCA-GTTCCACT-----A---------------------------------------CCAA-----------GCCCAAGCTCAGGCTCAGGCCCAGGCCSizeHit CountTotal NormTotal
No Reads
droFic1
CCCCAACTACC-----------AGCAGCAGCAACATCAGCAGCAGCAACCGG------------------------------------------------------------GCCAAC---------------------AAAGATCTCACTCGCCGCACCATGGGATTAACAGGA----------CATTG---------------AGTC-C----------------------------------GC-------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGCAGCGCAGGAAGT------------------------------------------CACCC---CTGTTGCAGCCCCACCAC---------------------------------------------------------------------------------------------------------------CTGCA---------ACTG------CACCAGC---AGCA-------------------------GC---AA------------CAACTGC------------AGCAGCAGCACCAGCTGCAC-------CAGCAA-------------------------------------------CTG---------C-----------------------------------AGATGCAGCAGC-----------------------TGCA-ACAGCAACACCAGCAGC---TGCAGCAA---------------------------CAGACCACGCCSizeHit CountTotal NormTotal
No Reads
droEle1
CAGCAGCAAC------------AACAACAACAACAACAACCGCTGATGAT----------------------------------------------------------------------GG--------------------------------------------CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAAGGACATTAA---CTTGCCCAC--ATCGCCACCTTTGCCGCCCAGTTTGTTCAAGGCCTTTACGCCCAGCACAACGCCTTCTCCC--CCAGCAACAGTGGCGG------------------------TAAAACCCA--------A---AC------------------------AGCAGCAGCAGCATCAGCAGCAGCAGCAGCCGCAT-------CATCAT----------------------------CAGCAA---------A--C-------------------------GCCGCAGCAACAT-----C---------A-A-------------------GTT------------------GT----GGCACAGCAAACCCA------------------------AGCTAAAACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAACAAC------------AACGGCAGCAACGGC---------GAAATAA-------------------------------------------AGTGCCA---------------------------------------------------------------------GGAAACACATTTA-------------------------AT---------------AT-----------------------------------------------CTACGCATAAAAATAAAAGTCTG--------GCAGCCGGCAA--T-----------------------------------------------------GGAAGTGAC---------------------------CAAACGA--------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CA------------CGACAGCGGCAGCAGCAGCAGCGGCAGCGGC---AGCGG-------CAG-------CAG------CA---------------ACA-------------------------------------GCACAGCAGCAACAT-----C---------A-G-------------------CA---------------------------------------------------------------CGGCAGCAACSizeHit CountTotal NormTotal
No Reads
droBia1
TCACATCAGC------------AGCGGCAACAGCAACAGCAACAGCAACGGCA-------------------------------------------ACAGC--------------------------------------AACGG----------------------CAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGAGGCAGCAATAT--GGCCAC------CAGTCGGTAGG------------------------------------GAATGGCTACCAGCAGCAGCAGCAGCGC------TACCG----------CAATGCCCAGAATGCCTACCAGC---------AGTACCAGC---------------------AT------------CAG----------CACCAG----CA------CCA------------------GCAGCAGCAGCAG---------CAGCAGCAGCATCACGCCCAGCA--------------------------------------------------------------------------GCTGCAC---------------------------CCGCACCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CCTCAACCACC-----------ACCATCAGCAGCAGCAGCAGCAGG---CGAA-------------------------------------------TG--------------GCT-------ATGCTAATGGCACCGCCAATGG--------------------------------------------------------------CTA-C----------------GGCTACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAAGTGCAATCCACGACAAACGCTTCACCACAGCACGCTTCCAACAACCA--------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAACA----------------GCAGCAGC---------AGCAGCAGC------------------------------ACCACCAGCAG-------CAG-------CAG------CAA---------------CAG---------A--T-------------------------GCCGC--------------------AGCA-GCACCACA-----ACTCCGTTT------------------TGA----A--CGGTCAC---------------------------CCAAACGGGCTSizeHit CountTotal NormTotal
No Reads
droEug1
CAACAT--AC------------AGCAACATGAGCAACAGCAGCAACAATGT------------------------------------------TCGACAGCTGG--------GGGATG---------------------GATGG---------TCGCT-----GGATGGATGGGA----------CATGGACCTGGACATGGACATGCACCTCTCCTTCTCCTCTTGCTTTGCAACCAAAAA--------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------CCACTC-----------------------------------------------------------------------------CGAGGCAGCCAATCAAT------------------------------------TTGTG----------------------------------------------------CAGCCACAGCAACAGCAACAGCAGCAA----------------------------------------------CAG-------CAA------CAGCAGCAACAGCAGCAGCCA---------A--ATCAGCA---------------------AATAGCCT-----CAAC---------A-A-------------------CTT------------------GT----CGAAAATCAA---------------------------AT-GATGTGCCSizeHit CountTotal NormTotal
No Reads
dm3
CAGCAGCAACAACTGCACATGGAGCAACAGCAGCAGCAGCAGCAGCAAT---A-------------------------------------------TGTGCA--------------------------------------------------------GC-----------------ATCAGCCG-------------------------CAGCAA------------------CCCGCCATCCAGCATACACAGCAGATTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGCCATTGTGCAGCAT-------------------------------------------ATGCAGCAGC---------AGAAGAAGCAGCAGC-----------------------------------AAGTGCT---------GCAG------CAA------CAG---CAGCAG---------C--AGCAGCAAC----AGT-----------------------ATCAAC---------A-A-------------------CAC----------GCACCCGCCTAC---CAAGTGCAA---------------------------TC-GTCTCCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................CACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AA..................................................................................................................................................................................................................................................................................................................................................27113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAGCAGCAGCAAT---A-------------------------------------------TGTGCA--------------------------------------------------------GC-----------------AT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGCCATTGTGCAGCA...................................................................................................................................................................................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............TGCACATGGAGCAACAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCAGATTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000001000000
...........................................................................................................................................................................................................................................................................................TCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGCCAT............................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................TA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGC...............................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................ACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACCA------------------------------------------------------------------------------------------------------------------AA..................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CTGCACATGGAGCAACAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGCAGCAACAACTGCACATGGAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................TA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.........................................................................................................................................................................................................................................................................................CTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAGTCCTGCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGC---------AGAAGAAGCAGCAGC-----------------------------------..................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000
.................................................................................................................................................................................................................................................................GATTTA-------------CTACACTTCA----------------------------------------------------------------------GAG--------------------------------------------------------------------------------------------------CAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGC---------AGAAGAAGCAGCAGC-----------------------------------AAG...............................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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......CAACAACTGCACATGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACCA------------------------------------------------------------------------------------------------------------------AATGCCATTGTGC.......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGGAGCAACAGCAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGCAGCAGC-----------------------------------AAG...............................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TGGAGCAACAGCAGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................TGGAGCAACAGCAGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AGAAGAAGCAGCAGC-----------------------------------A.................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------AGAAGAAGCAGCA.......................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................ATGGAGCAACAGCAGCAGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................TGGAGCAACAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---------AGAAGAAGCA..........................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAGCAACAGCAGCAGCAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAA------CAG---CAGCAG---------C--AGCA...................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000000000002000
.......................GCAACAGCAGCAGCAGCAGCAGCAAT---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAA------CAG---CAGCAG---------C--AGCAG..................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------CAA------CAG---CAGCAG---------C--AGC....................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
droSim2
CCACCGCCGC------------AGCAGCAACAACAACAGCAGCAGCAACAGCA-------------------------------------------GGCGCC--------------------------------------------------------GC-----------------CACAGTCA-------------------------CG---------------AGTTGCGCCCGGAGAACTGCATCTGC-----------------------------------------------------------AGCGGA--TGAATAGTTTCGGCCAGGACGGACAATTTCACTTTGAGT--------------------------------------------------------------------------------------------------CCAATC-------------------------------------------------------------------------------------------------------------------CGGCAGCTGGTGCCTATCAGCAGCATCAACTGATCAGCCAGTATCA----------------------------------GC---AA------------CAACAAC------------AGC------------AGCAG-------CAACAACAG-CA------GCA------------------GCCCCAGCAGCAG---------CAACAACATCATCTCGCCCAACAGCAGCAG-----C---------A-G-------------------CAT----ATG--AG----------------GAGTCA-------------------------------CACGCCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGCAGCATCAACTG............................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
..........................................................................................................................................................................................................................................................................................................................................CGGCCAGGACGGACAATTTCACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................GAATAGTTTCGGCCAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAACTGATCAGCCAGTATC...............................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................GACGGACAATTTCACTTTGAGT--------------------------------------------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTCACTTTGAGT--------------------------------------------------------------------------------------------------CCAATC-------------------------------------------------------------------------------------------------------------------CGGCAGC.....................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................GAATAGTTTCGGCCAGGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
...............................................................................................................................................................C-----------------CACAGTCA-------------------------CG---------------AGTTGCGCCCGGAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..................................AACAGCAGCAGCAACAGCA-------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
..............................CAACAACAGCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000100000
..........................GCAACAACAACAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
....................................CAGCAGCAGCAACAGCA-------------------------------------------GG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AA------------CAACAAC------------AGC------------AG.....................................................................................................................................................................................................................16200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG-----C---------A-G-------------------CAT----....................................................................16200.05100000000001000000
droSec2
CCACCGCCGC------------AGCAGCAACAACAACAGCAGCAGCAACAGCA-------------------------------------------GGCGCC--------------------------------------------------------GC-----------------CACAGTCA-------------------------CG---------------AGTTGCGCCCGGAGAACTACATCTGC-----------------------------------------------------------AGCGGA--TGAATAGCTTCGGCCAGGACGGACAATTTAACTTTGAGT--------------------------------------------------------------------------------------------------CCAATC-------------------------------------------------------------------------------------------------------------------CGGCAGCTGGTGCCTATCAGCAGCATCAACTGATCAGCCAGTATCA----------------------------------GC---AACAA-------------------------------------------------------CAGCAG----CA------GCA------------------GCCGCAGCAGCAG---------CAACAACATCATCTCGCCCAACAGCAGCAG-----C---------A-G-------------------CAT----ATG--AG----------------AAGTCA-------------------------------CACGCCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACTGATCAGCCAGTAT................................................................................................................................................................................................................................................................................................................2011.0010010
.....................................................................................................................................................................................GTCA-------------------------CG---------------AGTTGCGCCCGGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.................................................................................................................................................................................................................................................................................................................................GAATAGCTTCGGCCAGGACGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCCAACAGCAGCAG-----C---------A-G-------------------C..........................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------GC---AACAA-------------------------------------------------------CAGCAG----CA------GCA------------------G...................................................................................................................................................................21200.1020200
.......................................CAGCAGCAACAGCA-------------------------------------------GGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.0710010
.................................CAACAGCAGCAGCAACAGCA-------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
............................AACAACAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----CA------GCA------------------GCCGCAGCAGCAG---------C.............................................................................................................................................21200.0511000
droYak3
CAACAGCAAC------------AACAACAGAAGCAACAGCAACAGCGTT-GCAGTCGCCCGAACAATGTTATGCATATATTTAATTGATAAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------GCACATGAT--AAATTTTAATATTGTGTGGCAGAGGAACATGCTACTCTGA---------CACAAGC------AGCGCACAAAAAC--------------------------------------------------------GG----------------------------------------------------------------------------------------------------------CCACTG--------ATG----------------------------------------------------CAGCAACAGCAACAGCAA------------C---------------AT-------------------------CA-------GCAGCAACAGCAG------------CAGCAG------CAACAT---------CAACAACAGCAT-----------------------------------T----CAG-------CC------------------A--CCTGTAGCTGGGGCAACAT---------------------------AAGCCGACATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................AACAGAAGCAACAGCAACAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA------------C---------------AT-------------------------CA-------GCAGCAACAGCA......................................................................................................................................................................................2550.20101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------GCAGCAACAGCAG------------CAGCAG------CAACAT---------C.............................................................................................................................................2850.20100001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------C---------------AT-------------------------CA-------GCAGCAACAGCAG------------C........................................................................................................................................................................2290.11101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GCAGCAACAGCAG------------CAGC.....................................................................................................................................................................18200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG------------CAGCAG------CAACAT---------..............................................................................................................................................20200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG------------CAGCAG------CA...........................................................................................................................................................21200.05101000000000
droEre2
CCGCAATGCC------------AGCTGCAACAGG--CAGTGTCATCAATT-------------------------------------------TGGCG------CTGCCGG-GACAGAGCA-GCGATG-------------------TACTCTATGCCAC-----------------C-------------------------------------------------AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCACATAACGTTGCCGACGCCAACCGCAGGGCCACAG-----TTCCATCAGCCAAAG--CCAGAGCCAGCGGCATTAG---------------------------------------------------------------------------------------------------GTG----------------------------------------------------CAGCAGCAGCAGCAGTAA---------CAGC------------------------------AGCAG-------CAG-------CAG------CAACGGCAACTGCA---GCAA---------C--CCCAGCAG-------G---------------AGC-----AACAAC---------A-A-------------------CAT----------------TGGTCG------CTGTCAGCTCA-----------------G----CCGGAAATACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCACATAACGTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCCAAAG--CCAGAGCCAGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------CAGC------------------------------AGCAG-------CAG-------CAG------CAAC....................................................................................................................................................................................20200.1020000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-------CAG-------CAG------CAACGGC.................................................................................................................................................................................18180.0610000010

Generated: 05/17/2015 at 10:53 PM