ID:

dmo_697

 Coordinate:

scaffold_6473:7526193-7526343 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.5 -27.3

Flybase annnotation

exon [dmoj_GLEANR_16370:3]; CDS [Dmoj\GI15650-cds]; intron [Dmoj\GI15650-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. dmo_697  scaffold_6473:7526261-7526285 +
  2. scaffold_6482:1602754-1602778 +
  3. scaffold_6500:31005182-31005206 -
  4. scaffold_6500:31005963-31005987 -
  5. scaffold_6540:7311238-7311262 -
  6. scaffold_6540:13944781-13944805 -
  7. scaffold_6654:160064-160088 +
  8. scaffold_6680:24287427-24287451 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
TGTCGGTCTGTCCGTATATATGAACGCGTCGATCTCAGAAGTTATAAGAGCTAGAGACTTGAAATAATTTTCCCCAAGTCCGTGTATACCACGCGCAGATCAAGTTTTGCTTAAAAAATCGATAACTACTCCCGATATTTTGTTATCGATCAAAAACCTTATCGAAAGGTAGTTATTTAATTATATCTTCCACACCTTAAGAGCTAGAGTTTCCAAATTTTAAATGTAGACTTATATGTATGTGCCCCTAT
**************************************************..(((((((((.............))))))((((.....)))).(((((......)))))..........((((((((((..((((((((((........)))))....)))))...))))))))))........))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
......................................................................................................................TCGATAACTACTCCCGATATTTTGT............................................................................................................ 25 0 8 0.38 3 2 1
......................................................................................................................................ATATTTTGTTATCGATCAAAGACCT............................................................................................ 25 1 4 0.25 1 1 0
......................................................................................................................TCGATAACTACTCCCGATATTTTG............................................................................................................. 24 0 11 0.09 1 1 0
...........................................................................................................................................................................................................CTAGAGTTTCCAAATTTTAAATGC........................ 24 1 13 0.08 1 0 1
.....................................GAAGTTATAAGAGCTAGAGACTTG.............................................................................................................................................................................................. 24 0 13 0.08 1 1 0
..........................................................................................................................TAACTACTTCCGATATTTTGTT........................................................................................................... 22 1 20 0.05 1 1 0

Anti-sense strand reads

ACAGCCAGACAGGCATATATACTTGCGCAGCTAGAGTCTTCAATATTCTCGATCTCTGAACTTTATTAAAAGGGGTTCAGGCACATATGGTGCGCGTCTAGTTCAAAACGAATTTTTTAGCTATTGATGAGGGCTATAAAACAATAGCTAGTTTTTGGAATAGCTTTCCATCAATAAATTAATATAGAAGGTGTGGAATTCTCGATCTCAAAGGTTTAAAATTTACATCTGAATATACATACACGGGGATA
**************************************************..(((((((((.............))))))((((.....)))).(((((......)))))..........((((((((((..((((((((((........)))))....)))))...))))))))))........))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
 V056
head
...................................................................AAAAGGGGTTCAGGCACG...................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
...................................................................AAAAGGGGTTCAGGCACGG..................................................................................................................................................................... 19 2 4 0.50 2 2 0 0 0 0
.....................................................................AAGGGGTTCAGGCACTCAAG.................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0
.............................................................................................................................GATGAGGGCTATAAAACAATAGCT...................................................................................................... 24 0 16 0.19 3 1 0 2 0 0
......................................................................AGGGGTTCAGGCACGTCAGG................................................................................................................................................................. 20 3 8 0.13 1 0 0 1 0 0
.....................................................................AAGGGGTTCAGGCACGTC.................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
.................................................................TTTTAAGGGGTTCAGGCACG...................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0
........................................................................................................................CTATTGATGAGGGCTATAAAA.............................................................................................................. 21 0 20 0.10 2 2 0 0 0 0
...........GGCATATATACTTGCGCAGCTAGAGT...................................................................................................................................................................................................................... 26 0 10 0.10 1 0 0 0 1 0
...................................................................................................................................................................................TAATATAGAAGGTGTGGAAGT................................................... 21 1 11 0.09 1 0 1 0 0 0
..................................................................................................................................................................................TTAATATAGAAGGTGTGGAAGT................................................... 22 1 11 0.09 1 0 1 0 0 0
.....................................................................................................................................................................................ATATAGAAGGTGTGGAGGT................................................... 19 2 14 0.07 1 0 1 0 0 0
...............................................................................................................................................................................................TGTGGAAGTCTCGATCTCAAA....................................... 21 1 18 0.06 1 0 0 0 0 1
.....................................................................ATGAGGTTCAGGCACATCT................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
...............TCTATACTAGGGCAGCTAGAGTCT.................................................................................................................................................................................................................... 24 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:7526143-7526393 + dmo_697 TGTCGGTCTGTCCGTATATATGAACGCG----TC----GATCTCAGAAGTTATAAGAG-----------------------CTA-----GAGACTTGAAATAATTTTCCCCAAG---------------T------C-----CG-------TGTATACCACGCGCAGATCAAGTTTTGCTTAA--AAAATCGATAACTACTCCCGAT-------------------------------------------ATTTTGT-------------------------TATCGATCAAAAACCTT-------------------------------------------------ATCG--------------------------------------------------------------AAAG---------------------GTAGTT-------------A-----------------------------------------TTTAATTATATCTTCCACACCTTAAGAGCTA-----------------------GAGTTTCCAAATTTTAAAT--GTAGACTTATA---------TGTATGT-GC-----C----------CCTAT
droVir3 scaffold_12723:1106310-1106559 + TGTCCGTCTGTTCGTATGTATGAACGCA----AG----GATCTCAGAACCTATAAGAG-----------------------CTA-----GAGACTTGAAATAATAGATTT---------------AGGTG------C-----T--------CCTAGTGCCTGCGCAGATCGAGTTTGTTTCCG--ATAATCGAGAATTTCCCCCGAT-------------------------------------------TCCAAGT-------------------------AATCTATAAAAA------------------------------------------------------------------------------T---------------------------------GGATATCGAAATCCTGTTTTT-----------------G----------AGCA----------------------------------------AT---------TTTGGTAAATAATAAGAGCTA-----------------------GAGTCACCAAAGTTGAAAT--ATAGCTTCAAG-AAT--ATATATATCC-CC--------------------C
droGri2 scaffold_14830:957421-957649 - CGTCTGTCCATCCGTCTGTATGAACACG----CA----GATGTCAGAGACTATAAAAG-----------------------CTA-----GAGACTTCAAATGTGGAATAT---------------AGGTT------C-----T--------CGTATACCAGGCGCAGATCAAATTTGCTTTAT--TTTATAGATAACTGCCTCCATC-------------------------------------------TTTCGAT-------------------------TATCGATACATT------------------------------------------------------------------------------T---------------------------------A-----------------------AATTTCCG-ATAGCA----------ATAA-----------------------------------------A---------TGCT--ACAATTTTAAAGGCA-----------------------GAATGTTCTAATTA-A--T--ACATAA---T-------A--TGCA----------TA----------TGCAT
droWil2 scf2_1100000004762:4076616-4076885 + CGTCCGTCAGCCCGTCCGTATGAACGCG----TA----GATCTCGGAGACTATAAGACAACAACAACAACAAGAACAAAAACAA-----CAA---CTGGACCAA---------------------------------------------------------------ACTGGCACAAATC--------------------------------------------------------------------------------------------CTGCCGCAGGACAAAAAGATGGTTT--TCTAAGATGTCCTTGACGATCTCTACATTTTGGCATTAAAA-AA-----GTT---------------------TGGGTCATCAAAGGATCCGT-------CCTTATG----------------------------------AAAGC--------GT--AA-----------------------------------------A---------TCTCGAAGACTATATGAGATA-----------------------GAGCTACCAAATTTAATAT--GTGGGCTCGTG---------TAGTA---------------------TGTAC
dp5 4_group1:120724-120930 - A-----------------CATTAGCGCC----TA----GATCTCAGAGACTATAAAAG-----------------------CTA-----GAGCAACCAAATTTGGTATCC---------------ACACT------C-----C--------TAATATATCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAATTTCGCCACACCCCCTTCCGCCCACGCAAAGGATGCAT-------------------------------------------------ATCT--------------------------------------------------------------GGGG---------------------ATATTC----------ACAA-----------------------------------------A---------TCTCAGAGACTATTAAGGCTA-----------------------GAGTAACCAAATTTGGTAT--CCGCACT---------------------------------------TCTGT
droPer2 scaffold_225:39020-39260 - A-----TCTGTCCGTCATTATAAGCGCC----TA----GTGCTCAAAGACTATAAAGA-----------------------CTATGCTAGAGCAACGACATTTTATATCC---------------GGAAT------T----CTGT------GATATGTCACTGTTAGAAGATTTT-TTTTT----------------------------------------------------------------------------TAAACTTCGCCAAACCCCCTTCCGCCACCGCAAAGGAAGGAA-------------------------------------------------ATCT--------------------------------------------------------------GGGG---------------------GTATCC----------ACAA-----------------------------------------A---------TCTCAGAGACTTTTAAGGCTA-----------------------GAGTAACCAAATTTGGTAT--CCACACTCCTG---------TTAGA--TCC---ACT----------CCTGT
droAna3 scaffold_6478:1034-1250 - TGGCGGTTTCTAC------------GCA----AACTAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCT--TTGAAACTTCGCA---CACATCCTTCTTTTC----CTTGCAGGTAGTACTTAAGTCG--------------------GAAG---TGTAA--AAAATTAGTAGTTACTTCTGAT------------AATGTACCTTCA--TCTGTCGAAT----------------------ATCAAGACGCTTTTA------------------------ATAA--A----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCCA-------------------------------------GATAGTCCAAG---------AGCACGAGTAT-----------CAAG--AGG---AAA-----TTAAAAATGT
droBip1 scf7180000394866:5557-5771 - TGTCCGTCTGTCTGTGTAT----ACGCC----AACTAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCGACTTGAAACTTTGCA---CACACCCTTCTTTCC----TTTGC----AGTATATAAGTCA--------------------GAACAGCCG-------------------------------------------------------------------------------------------------------------------------------G--G----------------------------ATCGGCCGAC----------AA---------TA--------------TCCTATAGCTGCCATA----------------------------------------TAACTGATTGAT-------------CGGAAATGATAT---------------------A---------ACTTTGACGTTTTCAAAGTTA-----------------------GAGAGTTCAAATTTTACAC--GAGA------------------------------------------GTTAT
droKik1 scf7180000301734:57001-57239 - CC---GT----CC------------GCA----AACTAGTCCTTCAG----TTTAAAAG-----------------------CTA-----TCTGAATGAAACTTG-CA---AATAGTCTTCTGAAT----ACTCTCACTTCTATATATATCG--------------------GAACGGGCC-------------------------------------------------------------------------------------------------------------------------------G--G----------------------------ATAGGATGAC----------TA---------TA--------------TCATATAGCTGCTATA----------------------------------------CAAATGATCGACA--AA---TTTGTAGAAAATATGATAACTTGGCTGTTTTTCAACATA---------TTTAGATCATTTTAAAGATTT-----------------------TT-TTTATTATTTC--------------AGAA----TT---TTAAA--TTT---AAT----------TTTAT
droFic1 scf7180000454107:2250726-2250931 + TGTCGGTTTCTCTTT-----------------AAATAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCTTGCTCAAACATTACC---AAAAGTCGTGTAGTT----ATTGCACGCAGTATATGATC--TGTTGTTTTTGATCAGATCGACTTGATTTCTTCCA------------------GAT------------GGTGTTTTTTAACTACTGCCGAAT--------TTCG-------------AATTAAATTTTA------------------------TCAA--A----------------------------ATTGGATAAC----------TA---------TA--------------TAATTTATCTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA
droEle1 scf7180000491009:76490-76699 + TGTTCGTCTGTCCGTCCATATGAACGTC----GA----GATCTCGGAAACCATAAAAG-----------------------CTA-----TAGATTTAGAGTTT-------------------------------------------------------------------------TTTTG----------------------------------------------------------------------------TAAACGTGTCCACGCCCACTATAAAGTCCAAAAATCGTGAAA-------------------------------------------------GTCTGTCATGTC-------------------------------------GATCTGAGA-------------------------CATGGTAGAAATTG----------GTTA----------------------------------CCGGCTGATTAAGTGTGTTTCGAACACATCTATCGGTA-----------------------GAA--------------------------------------TAGAA--TCT---TTT----------CAAAT
droRho1 scf7180000778552:59119-59333 - TGTCCGTCTGTCCGTCTGTTTCAATACCGTTTGC----GAGCTCAG----TTTAAAAG-----------------------CTA-----GCGATCTGAAACTTTCAC-AG-----TCGTCC---------------T-----A--------AAACAAGTGTACGCAGATCAAGTTTGAATAGA------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGATGTC----------TA---------TA--------------TCCTATAGCTCCCATA----------------------------------------GGAACAATCG---GATATAACTTG-CAAGAATGG-------------------AAGATA---------TTTCGCGCAGTGTAAAAGCTA-----------------------TC-TTTCCAAA--------------------------------------------------------TCTTA
droBia1 scf7180000301576:58132-58366 - -GTCCGT----CCGTTCATATGAACGCT----GA----GATCTCGGAAACTATAAAAG-----------------------CTA-----GAACAGTCAAACTTGGCATGC---------------AGATT------C-----C--------TGGGCTTCCTGCGCAGCGCAATTTTGTTTCAGCAAAAATCTGTAGCGACTACAGTTCTTATGATAGAAACAAAATTTTAACTAAAATGTGTTTGCTAAA-------AAAAATGTGCCATGCCCACTCTAACGCCCACAAACTGTTA-------AACG--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT---------TTTGTCT-GC--------------------C
droTak1 scf7180000413418:594-833 + TGTCCGTCTGTCTGTCTGTATGAACGTT----GA----GATCTCGGAAACTACAAAAG-----------------------CTA-----GAACGTTGAGATTTTCCACAC---------------GTATT------C-----T--------TGGGCCTCCTACGCAGCGCAAGTTTTTTTTAG----------------------------------------------------------------------------CCGAGCGCCACGCCCCCTCTAACGCCCAAA-ATCGCCCAC-------------------------------------------------T----------AATGATTTTAAAAT---------------------------------GTGTCCTGTGCCCACATCTTTATAGATTTCCG-AG---------------------------------------------------------------------------------------AAA-----------------------TATAAATGCAATTT--------------TGTA----GT---GTATA--TTT---ATA----------CCTAT
droEug1 scf7180000409649:44634-44867 + TGTCCGTCCGTCTGTCCGTATGAACGCT----GA----GATCTTAGAAACTATAAAAG-----------------------ATA-----CAAAGTTGAGATTGA---------------------AGATT------C-----T--------TGAGGTCCCTACGCAGCGCAAGTTTTTTAC----------------------------------------------------------------------------AGCATCCTGCCACGCCCACTCTAACGCCCACAAATCGAGCAG-------------------------------------------------AACT--------------------------------------------------------------AAAA---------------------TCG--C--------TG--AA-----------------------------------------A---------TCTCCGGAACTATTAGAGCTA-----------------------GAAAGTTGAAATTCAGCAT--GTATAAT----------C--TTTAGAT-GC---CAGCGGAT-----CTTAT
dm3 chrX:19016094-19016346 - -GTCCGCCTG----TCCGTATAAACTTC----GA----GATCTCAGGATCTATAAAAG-----------------------TTT-----TCTAGCTGATAT-----------------------------------------------------------------------GTTTTCTAT----------------------------------------------------------------------------AACATATTGCCACGCCCACTCCAACGCCTACAAACCACCCAG-------------------------------------------------AATTACCACGC----------------------------------------------------------GCACATATTTAAAAAATTGTT-GG------------------------------------ATATTTTTTCA-----TCATTTTATTAATCGT--------------GTAAATTT--CTATCCCACTTTAACGACCTAAAGCCGCCAAATCGGTTACGCCCACACTTTTGAACA--ATTTGTATT--------CC----------CCAAT
droSim2 x:19527342-19527555 + -GTCGATCTA----GTCAT-------------AA----TATCTCAGAATTTATAAAGG-----------------------CTA-----GAAGGTTGATATTCAGCATAC---------------TGATT------C-----T--------AGAGACAAAGACGCAGCGCAAAATTGCCAAAA--TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCC----------CA---------TT--------------TTCGATATTTTTTTTTTAAT-------------------------TATATTGAATATTA----------ATTA-----------------------------------------T---------TATTATATATTTTTTATATTATA---------------------TCATAATTTAATTAGACAT--GTAAATTTCTA---------TCGAATT-GC--------------------C
droSec2 scaffold_3:5655535-5655661 + TGTCCG------------TATAATCGTA----AA----GTTCTTGGGTACTATAAGAG-----------------------CTA-----CCT---TGGAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCCACGCCCACTGTAACGCCCAGGGATCATGC--TCCAGAATA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAC---------TGTTTCT-GCCCCTTT--TG----TTTTAGA
droYak3 X:20508439-20508614 - TGATTGTCCG----TTCGTAAGAACGTA----GA----ATTCTTGGGAGCTACAAGAG-----------------------CTG-----GAAAGTTA------TACACGC---------------AGATT------C-----T--------AGTAACGCCCACACAGCACAAGTTTGCCTTAA--ATA----------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTT----------AA---------TA--------------TTTTAT-------TTTTAAT----------------------------------ATAAT--------AT--TT-----------------------------------------A---------CTTTAATATTTATATAATATT-----------------------TTATT--------------------------------------------AC---TTA----------CATAC
droEre2 scaffold_4512:279000-279217 + TGTCCGTTTG----TCCGTATCAACGCC----TC----GATCTCAGGAACTACAAACG-----------------------CTA-----GAATGTTGAGATTATGCTT----------------------------C-----C--------AGAGACATAGACGCAGCGCAAGTTGTTTAC-----------------------------------------------------------------------------AAATGTTGCCACGCCCAC------------AAACCGCACAA-------------------------------------------------AACTGTCACGCC-----------------------------------------------------------ACACTTTT----------------------------------------GAAAAATGTGATATTTT--------------------------------------TTAATTCTT-----------------------AAATAAATAT--------T--GTAAATTTCTA---------TGTATTT-GC---CAAAATA------CTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGTCGGTCTGTCCGTATATATGAACGCG----TC----GATCTCAGAAGTTATAAGAG-----------------------CTA-----GAGACTTGAAATAATTTTCCCCAAG---------------T------C-----CG-------TGTATACCACGCGCAGATCAAGTTTTGCTTAA--AAAATCGATAACTACTCCCGAT-------------------------------------------ATTTTGT-------------------------TATCGATCAAAAACCTT-------------------------------------------------ATCG--------------------------------------------------------------AAAG---------------------GTAGTT-------------A-----------------------------------------TTTAATTATATCTTCCACACCTTAAGAGCTA-----------------------GAGTTTCCAAATTTTAAAT--GTAGACTTATA---------TGTATGT-GC-----C----------CCTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................TCGATAACTACTCCCGAT-------------------------------------------ATTTTGT-------------------------........................................................................................................................................................................................................................................................................................................................................................2580.383200010
.............................................................................................................................................................................................TCGATAACTACTCCCGAT-------------------------------------------ATTTTG..................................................................................................................................................................................................................................................................................................................................................................................24110.091100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-----------------------GAGTTTCCAAATTTTAAAT--GC.................................................24130.081000010
.............................................GAAGTTATAAGAG-----------------------CTA-----GAGACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081100000
droVir3
TGTCCGTCTGTTCGTATGTATGAACGCA----AG----GATCTCAGAACCTATAAGAG-----------------------CTA-----GAGACTTGAAATAATAGATTT---------------AGGTG------C-----T--------CCTAGTGCCTGCGCAGATCGAGTTTGTTTCCG--ATAATCGAGAATTTCCCCCGAT-------------------------------------------TCCAAGT-------------------------AATCTATAAAAA------------------------------------------------------------------------------T---------------------------------GGATATCGAAATCCTGTTTTT-----------------G----------AGCA----------------------------------------AT---------TTTGGTAAATAATAAGAGCTA-----------------------GAGTCACCAAAGTTGAAAT--ATAGCTTCAAG-AAT--ATATATATCC-CC--------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............TATGTATGAACGCA----AG----GATCTCAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.40280000000000000000000000000028000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAATAAGAGCTA-----------------------GAGTCACCA...............................................................25200.459008000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------AT---------TTTGGTAAATAATAAGAGCTA-----------------------GAG.....................................................................27200.255000000000000000000000000000000000050000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATAATAAGAGCTA-----------------------GAGTCACC................................................................24200.204000200000000000000000000000000000020000000000000000000000000000
..............TATGTATGAACGCA----AG----GATCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000000000000000011000020000000000000000000000000
........................................................................................................................................................................TCGAGTTTGTTTCCG--ATAATCGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TGCGCAGATCGAGTTTGTTTCCG--ATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000000000000000000000000000000000000000003
.........................................................................................................................................................TAGTGCCTGCGCAGATCGAGTTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000001000000000000000000002000000000000000000000000000000000000
..............................................................................................................................................................CCTGCGCAGATCGAGTTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTTTT-----------------G----------AGCA----------------------------------------AT---------TTTGGTA.............................................................................................................2470.141000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTA-----------------------GAGTCACCAAAGTTG.........................................................2290.111000000000000000000000000000000100000000000000000000000000000000
....................................................TAAGAG-----------------------CTA-----GAGACTTGAAATAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................CGCAGATCGAGTTTGTTTCCG--ATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000002000000000000000000000000000000000
................................................................................................................................................................TGCGCAGATCGAGTTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000020000000000000000000000000000000000000000000000000000000
..............TATGTATGAACGCA----AG----GATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000000000000000000000000000000000000000000000000000000000000
.............................................................................................................T---------------AGGTG------C-----T--------CCTAGTGCCTGCGCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000020000000000000000000000000000000000000
..........................................TCAGAACCTATAAGAG-----------------------CTA-----GAGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000200000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATAATAAGAGCTA-----------------------GAGT....................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
.......CTGTTCGTATGTATGAACGCA----AG----GATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.081000000000000000000000000000000000000000000000000000000000010000
........TGTTCGTATGTATGAACGCA----AG----GATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.081000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................TAGATTT---------------AGGTG------C-----T--------CCTAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.061000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................AGTGCCTGCGCAGATCGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................G------C-----T--------CCTAGTGCCTGCGCAGATCGAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------------------------------------AT---------TTTGGTAAATAATAAGAGC.................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
...........................A----AG----GATCTCAGAACCTATAAGAG-----------------------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................GTGCCTGCGCAGATCGAGTTTGTTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................T--------CCTAGTGCCTGCGCAGATCGAGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
.........GTTCGTATGTATGAACGCA----AG----GATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATAATAAGAGCTA-----------------------GAGTCACCAAA.............................................................28200.051000000000000000000000000000001000000000000000000000000000000000
...............................................ACCTATAAGAG-----------------------CTA-----GAGACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CCTGCGCAGATCGAGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
.............GTATGTATGAACGCA----AG----GATCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TTTGGTAAATAATAAGAGCTA-----------------------G.......................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
.......................................ATCTCAGAACCTATAAGAG-----------------------CTA-----GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000000000000000000000001000
.......................................ATCTCAGAACCTATAAGAG-----------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000100000000000000000000000000000
...................ATGAACGCA----AG----GATCTCAGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------AT---------TTTGGTAAATAATAAGAGCTA-----------------------GA......................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................CTGCGCAGATCGAGTTTGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................CTAGTGCCTGCGCAGATCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
....................TGAACGCA----AG----GATCTCAGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
..............TATGTATGAACGCA----AG----GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAATAATAAGAGCTA-----------------------GAGTCACC................................................................28200.051000000000000000000000000000000000010000000000000000000000000000
.......................................ATCTCAGAACCTATAAGAG-----------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
............................................AGAACCTATAAGAG-----------------------CTA-----GAGACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000001000000000000000000000000000000000000000000000000000000
........................................TCTCAGAACCTATAAGAG-----------------------CTA-----GAGACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TCGAGTTTGTTTCCG--ATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
.................GTATGAACGCA----AG----GATCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............ATGTATGAACGCA----AG----GATCTCAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGCAGATCGAGTTTGTTTCCG--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAGAGCTA-----------------------GAGTCACCAA..............................................................22200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................C-----T--------CCTAGTGCCTGCGCAGATCGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................CCTGCGCAGATCGAGTTTGTTTCCG--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000001000000000000000000000000
.......................................ATCTCAGAACCTATAAGAG-----------------------CTA-----GAGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
..............TATGTATGAACGCA----AG----GATCTCAGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000100000000000000000000000000000000000000000000000000000000
....................TGAACGCA----AG----GATCTCAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
droGri2
CGTCTGTCCATCCGTCTGTATGAACACG----CA----GATGTCAGAGACTATAAAAG-----------------------CTA-----GAGACTTCAAATGTGGAATAT---------------AGGTT------C-----T--------CGTATACCAGGCGCAGATCAAATTTGCTTTAT--TTTATAGATAACTGCCTCCATC-------------------------------------------TTTCGAT-------------------------TATCGATACATT------------------------------------------------------------------------------T---------------------------------A-----------------------AATTTCCG-ATAGCA----------ATAA-----------------------------------------A---------TGCT--ACAATTTTAAAGGCA-----------------------GAATGTTCTAATTA-A--T--ACATAA---T-------A--TGCA----------TA----------TGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGTCCGTCAGCCCGTCCGTATGAACGCG----TA----GATCTCGGAGACTATAAGACAACAACAACAACAAGAACAAAAACAA-----CAA---CTGGACCAA---------------------------------------------------------------ACTGGCACAAATC--------------------------------------------------------------------------------------------CTGCCGCAGGACAAAAAGATGGTTT--TCTAAGATGTCCTTGACGATCTCTACATTTTGGCATTAAAA-AA-----GTT---------------------TGGGTCATCAAAGGATCCGT-------CCTTATG----------------------------------AAAGC--------GT--AA-----------------------------------------A---------TCTCGAAGACTATATGAGATA-----------------------GAGCTACCAAATTTAATAT--GTGGGCTCGTG---------TAGTA---------------------TGTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................TATGAACGCG----TA----GATCTCGGAGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2643.7515010140
....................TGAACGCG----TA----GATCTCGGAGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2443.5014001130
....................TGAACGCG----TA----GATCTCGGAGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.50603030
....................TGAACGCG----TA----GATCTCGGAGACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2641.25501040
..................TATGAACGCG----TA----GATCTCGGAGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.50200020
................CGTATGAACGCG----TA----GATCTCGGAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100010
....................TGAACGCG----TA----GATCTCGGAGACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25101000
..................TATGAACGCG----TA----GATCTCGGAGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100100
................CGTATGAACGCG----TA----GATCTCGGAGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100010
....................TGAACGCG----TA----GATCTCGGAGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25101000
............CGTCCGTATGAACGCG----TA----GATCTCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100010
..............TCCGTATGAACGCG----TA----GATCTCGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17101000
....................TGAACGCG----TA----GATCTCGGAGACTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100010
................CGTATGAACGCG----TA----GATCTCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17100010
...............CCGTATGAACGCG----TA----GATCTCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17101000
dp5
A-----------------CATTAGCGCC----TA----GATCTCAGAGACTATAAAAG-----------------------CTA-----GAGCAACCAAATTTGGTATCC---------------ACACT------C-----C--------TAATATATCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAATTTCGCCACACCCCCTTCCGCCCACGCAAAGGATGCAT-------------------------------------------------ATCT--------------------------------------------------------------GGGG---------------------ATATTC----------ACAA-----------------------------------------A---------TCTCAGAGACTATTAAGGCTA-----------------------GAGTAACCAAATTTGGTAT--CCGCACT---------------------------------------TCTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................GAGACTATAAAAG-----------------------CTA-----GAGCAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242016.25325032500000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------TCTCAGAGACTATTAAGGCTA-----------------------GAG.....................................................................25201.503000000000300
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCAAATTTGGTAT--CCGCACT---------------------------------------TCTG.27200.60120800000400
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAAT............................................................................................................................................................................................................................................................................................................................................................................28200.3570320002000
....................TTAGCGCC----TA----GATCTCAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570000007000
.......................................ATCTCAGAGACTATAAAAG-----------------------CTA-----GAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.2550000000500
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------A---------TCTCAGAGACTATTAAGG..................................................................................................21200.2040400000000
............................................AGAGACTATAAAAG-----------------------CTA-----GAGCAACCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.2040400000000
.....................................................................................................................................................................................................................................................................TTTCGCCACACCCCCTTCCGCCCA.....................................................................................................................................................................................................................................................................................................................................................24160.1930300000000
......................................................................................................................................................................................................................................................................TTCGCCACACCCCCTTCCGCCCACG...................................................................................................................................................................................................................................................................................................................................................25120.1720200000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................24200.1530100101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC----------ACAA-----------------------------------------A---------TCTCAGAGACTA........................................................................................................21200.1530300000000
......................................................................................................................................................................................................................................................................TTCGCCACACCCCCTTCCGCCCA.....................................................................................................................................................................................................................................................................................................................................................23160.1320200000000
...................ATTAGCGCC----TA----GATCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------ACAA-----------------------------------------A---------TCTCAGAGACTATTAAGGC.................................................................................................25200.1020000000200
.....................TAGCGCC----TA----GATCTCAGAGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAA.............................................................................................................................................................................................................................................................................................................................................................................27200.1020200000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAAA............................................................................................................................................................................................................................................................................................................................................................................28200.1020200000000
..................................................................................TA-----GAGCAACCAAATTTGGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000200000
............................................AGAGACTATAAAAG-----------------------CTA-----GAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020020000000
..........................................................................................AGCAACCAAATTTGGTATCC---------------ACACT------C-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200000000
.......................................................................................................................................................TAATATATCAGACCGAGACGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020100000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------A---------TCTCAGAGACTATTAAGGCT................................................................................................24200.1020200000000
...............................................................................................................................................................................TGTTTC----------------------------------------------------------------------------AAAATTTCGCCACACCCCCT.............................................................................................................................................................................................................................................................................................................................................................26200.1020200000000
..................................................................................................................................................................ACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAAT............................................................................................................................................................................................................................................................................................................................................................................24200.1020200000000
.................................................................................................................................T------C-----C--------TAATATATCAGACCGAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
.............................................GAGACTATAAAAG-----------------------CTA-----GAGCAACCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000020
.......................................................................................................................................................TAATATATCAGACCGAGACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020100000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------A---------TCTCAGAGACTATTAAGGCTA-----------------------........................................................................24200.1020200000000
.......................................................................................................................................................................................................................................................................TCGCCACACCCCCTTCCGCCCACGCAA................................................................................................................................................................................................................................................................................................................................................27120.0810100000000
.....................................................................................................................................................................................................................................................................TTTCGCCACACCCCCTTCCGCCCACGCA.................................................................................................................................................................................................................................................................................................................................................28120.0810100000000
.......................................................................................................................................................................................................................................................................TCGCCACACCCCCTTCCGCCCA.....................................................................................................................................................................................................................................................................................................................................................22170.0610100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTTGGTAT--CCGCACT---------------------------------------TC...21200.0510000001000
..............................................................................................................................................C--------TAATATATCAGACCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATTAAGGCTA-----------------------GAGTA...................................................................20200.0510001000000
.......................................................................................................................................................TAATATATCAGACCGAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000010
.......................................................................................................GGTATCC---------------ACACT------C-----C--------TAATATATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................................................................................................................CAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AA...............................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------A---------TCTCAGAGACTATTAAGG..................................................................................................22200.0510100000000
..................................................TATAAAAG-----------------------CTA-----GAGCAACCAAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000010
.........................................................................................................TATCC---------------ACACT------C-----C--------TAATATATCAGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAATT...........................................................................................................................................................................................................................................................................................................................................................................29200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGGCTA-----------------------GAGTAACCT...............................................................19200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................TCT--------------------------------------------------------------GGGG---------------------ATATTC----------ACAA-----------------------------------------A---------TCA.................................................................................................................21200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTAAGGCTA-----------------------GAGTAACC................................................................20200.0510000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTAT--CCGCACT---------------------------------------TCTG.20200.0510100000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000001000
..........................................................................................................................................................TATATCAGACCGAGACGAGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------------------------A---------TCTCAGAGACTATT......................................................................................................19200.0510000000010
........................CGCC----TA----GATCTCAGAGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
......................................................................................................TGGTATCC---------------ACACT------C-----C--------TAATATATCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000100
.............................................................................................AACCAAATTTGGTATCC---------------ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTATTAAGGCTA-----------------------GAGTAACCAAATT...........................................................29200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAGACTATTAAGGCTA-----------------------........................................................................20200.0510000000010
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTA-----------------------GAGTAACCAAATTTGGTAT--CC.................................................26200.0510010000000
..............................................................................................................................................C--------TAATATATCAGACCGAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
..............................................................................................................................................C--------TAATATATCAGACCGAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................TCAGAGACTATAAAAG-----------------------CTA-----GAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000001000
.................................A----GATCTCAGAGACTATAAAAG-----------------------CTA-----GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.................................................................................................................................T------C-----C--------TAATATATCAGACCGAGACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..............................................................................................................................................................TCAGACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AA...............................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..................................................................................................................................................................ACCGAGACGAGTTTGTTTC----------------------------------------------------------------------------AAAA.............................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
A-----TCTGTCCGTCATTATAAGCGCC----TA----GTGCTCAAAGACTATAAAGA-----------------------CTATGCTAGAGCAACGACATTTTATATCC---------------GGAAT------T----CTGT------GATATGTCACTGTTAGAAGATTTT-TTTTT----------------------------------------------------------------------------TAAACTTCGCCAAACCCCCTTCCGCCACCGCAAAGGAAGGAA-------------------------------------------------ATCT--------------------------------------------------------------GGGG---------------------GTATCC----------ACAA-----------------------------------------A---------TCTCAGAGACTTTTAAGGCTA-----------------------GAGTAACCAAATTTGGTAT--CCACACTCCTG---------TTAGA--TCC---ACT----------CCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------A---------TCTCAGAGACTTTTAAGG..................................................................................................2090.111010000
droAna3
TGGCGGTTTCTAC------------GCA----AACTAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCT--TTGAAACTTCGCA---CACATCCTTCTTTTC----CTTGCAGGTAGTACTTAAGTCG--------------------GAAG---TGTAA--AAAATTAGTAGTTACTTCTGAT------------AATGTACCTTCA--TCTGTCGAAT----------------------ATCAAGACGCTTTTA------------------------ATAA--A----------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCCA-------------------------------------GATAGTCCAAG---------AGCACGAGTAT-----------CAAG--AGG---AAA-----TTAAAAATGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................TACTTCTGAT------------AATGTACCTTCA--TCTGT....................................................................................................................................................................................................................................................................................................................................................................................................2730.331010000
....................................................................................................................................................................................................TTACTTCTGAT------------AATGTACCTTCA--TC.......................................................................................................................................................................................................................................................................................................................................................................................................2530.331100000
......................................................................................................................................................................................................ACTTCTGAT------------AATGTACCTTCA--TC.......................................................................................................................................................................................................................................................................................................................................................................................................2330.331100000
.....................................................................................................................................................................................................TACTTCTGAT------------AATGTACCTTCA--TC.......................................................................................................................................................................................................................................................................................................................................................................................................2430.331010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCCAAG---------AGCACGAGTAT-----------..............................22200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCA-------------------------------------GATAGTCCAAG---------AGCACGA.............................................23200.051100000
..............................................................................................................CACATCCTTCTTTTC----CTTGCAGGTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAG---------AGCACGAGTAT-----------CAAG--AGG---AA................26200.051000010
droBip1
TGTCCGTCTGTCTGTGTAT----ACGCC----AACTAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCGACTTGAAACTTTGCA---CACACCCTTCTTTCC----TTTGC----AGTATATAAGTCA--------------------GAACAGCCG-------------------------------------------------------------------------------------------------------------------------------G--G----------------------------ATCGGCCGAC----------AA---------TA--------------TCCTATAGCTGCCATA----------------------------------------TAACTGATTGAT-------------CGGAAATGATAT---------------------A---------ACTTTGACGTTTTCAAAGTTA-----------------------GAGAGTTCAAATTTTACAC--GAGA------------------------------------------GTTATSizeHit CountTotal NormTotal
No Reads
droKik1
CC---GT----CC------------GCA----AACTAGTCCTTCAG----TTTAAAAG-----------------------CTA-----TCTGAATGAAACTTG-CA---AATAGTCTTCTGAAT----ACTCTCACTTCTATATATATCG--------------------GAACGGGCC-------------------------------------------------------------------------------------------------------------------------------G--G----------------------------ATAGGATGAC----------TA---------TA--------------TCATATAGCTGCTATA----------------------------------------CAAATGATCGACA--AA---TTTGTAGAAAATATGATAACTTGGCTGTTTTTCAACATA---------TTTAGATCATTTTAAAGATTT-----------------------TT-TTTATTATTTC--------------AGAA----TT---TTAAA--TTT---AAT----------TTTATSizeHit CountTotal NormTotal
No Reads
droFic1
TGTCGGTTTCTCTTT-----------------AAATAGTCTCTCAG----TTTTAAAG-----------------------CTA-----TCTTGCTCAAACATTACC---AAAAGTCGTGTAGTT----ATTGCACGCAGTATATGATC--TGTTGTTTTTGATCAGATCGACTTGATTTCTTCCA------------------GAT------------GGTGTTTTTTAACTACTGCCGAAT--------TTCG-------------AATTAAATTTTA------------------------TCAA--A----------------------------ATTGGATAAC----------TA---------TA--------------TAATTTATCTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTCGTCTGTCCGTCCATATGAACGTC----GA----GATCTCGGAAACCATAAAAG-----------------------CTA-----TAGATTTAGAGTTT-------------------------------------------------------------------------TTTTG----------------------------------------------------------------------------TAAACGTGTCCACGCCCACTATAAAGTCCAAAAATCGTGAAA-------------------------------------------------GTCTGTCATGTC-------------------------------------GATCTGAGA-------------------------CATGGTAGAAATTG----------GTTA----------------------------------CCGGCTGATTAAGTGTGTTTCGAACACATCTATCGGTA-----------------------GAA--------------------------------------TAGAA--TCT---TTT----------CAAATSizeHit CountTotal NormTotal
No Reads
droRho1
TGTCCGTCTGTCCGTCTGTTTCAATACCGTTTGC----GAGCTCAG----TTTAAAAG-----------------------CTA-----GCGATCTGAAACTTTCAC-AG-----TCGTCC---------------T-----A--------AAACAAGTGTACGCAGATCAAGTTTGAATAGA------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGATGTC----------TA---------TA--------------TCCTATAGCTCCCATA----------------------------------------GGAACAATCG---GATATAACTTG-CAAGAATGG-------------------AAGATA---------TTTCGCGCAGTGTAAAAGCTA-----------------------TC-TTTCCAAA--------------------------------------------------------TCTTASizeHit CountTotal NormTotal
No Reads
droBia1
-GTCCGT----CCGTTCATATGAACGCT----GA----GATCTCGGAAACTATAAAAG-----------------------CTA-----GAACAGTCAAACTTGGCATGC---------------AGATT------C-----C--------TGGGCTTCCTGCGCAGCGCAATTTTGTTTCAGCAAAAATCTGTAGCGACTACAGTTCTTATGATAGAAACAAAATTTTAACTAAAATGTGTTTGCTAAA-------AAAAATGTGCCATGCCCACTCTAACGCCCACAAACTGTTA-------AACG--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT---------TTTGTCT-GC--------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
TGTCCGTCTGTCTGTCTGTATGAACGTT----GA----GATCTCGGAAACTACAAAAG-----------------------CTA-----GAACGTTGAGATTTTCCACAC---------------GTATT------C-----T--------TGGGCCTCCTACGCAGCGCAAGTTTTTTTTAG----------------------------------------------------------------------------CCGAGCGCCACGCCCCCTCTAACGCCCAAA-ATCGCCCAC-------------------------------------------------T----------AATGATTTTAAAAT---------------------------------GTGTCCTGTGCCCACATCTTTATAGATTTCCG-AG---------------------------------------------------------------------------------------AAA-----------------------TATAAATGCAATTT--------------TGTA----GT---GTATA--TTT---ATA----------CCTATSizeHit CountTotal NormTotal
No Reads
droEug1
TGTCCGTCCGTCTGTCCGTATGAACGCT----GA----GATCTTAGAAACTATAAAAG-----------------------ATA-----CAAAGTTGAGATTGA---------------------AGATT------C-----T--------TGAGGTCCCTACGCAGCGCAAGTTTTTTAC----------------------------------------------------------------------------AGCATCCTGCCACGCCCACTCTAACGCCCACAAATCGAGCAG-------------------------------------------------AACT--------------------------------------------------------------AAAA---------------------TCG--C--------TG--AA-----------------------------------------A---------TCTCCGGAACTATTAGAGCTA-----------------------GAAAGTTGAAATTCAGCAT--GTATAAT----------C--TTTAGAT-GC---CAGCGGAT-----CTTATSizeHit CountTotal NormTotal
No Reads
dm3
-GTCCGCCTG----TCCGTATAAACTTC----GA----GATCTCAGGATCTATAAAAG-----------------------TTT-----TCTAGCTGATAT-----------------------------------------------------------------------GTTTTCTAT----------------------------------------------------------------------------AACATATTGCCACGCCCACTCCAACGCCTACAAACCACCCAG-------------------------------------------------AATTACCACGC----------------------------------------------------------GCACATATTTAAAAAATTGTT-GG------------------------------------ATATTTTTTCA-----TCATTTTATTAATCGT--------------GTAAATTT--CTATCCCACTTTAACGACCTAAAGCCGCCAAATCGGTTACGCCCACACTTTTGAACA--ATTTGTATT--------CC----------CCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTT--CTATCCCACTTTAACGACC..........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AACCACCCAG-------------------------------------------------AATTACCACG............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TATAAACTTC----GA----GATCTCAGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GG------------------------------------ATATTTTTTCA-----TCATTTTATT...........................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................T----------------------------------------------------------------------------AACATATTGCCACGCCCACTCCA..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAAACTTC----GA----GATCTCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACCTAAAGCCGCCAAATCGGT........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCACTTTAACGACCTAA.......................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACATATTGCCACGCCCACTC............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATTGCCACGCCCACTCCAAC........................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCCACGCCCACTCCAAC........................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATTGTT-GG------------------------------------ATATTTTT.............................................................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATTGTT-GG------------------------------------ATATTTTTT............................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GG------------------------------------ATATTTTTTCA-----TCATTTT..............................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAATTGTT-GG------------------------------------ATATTTT..............................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAATTGTT-GG------------------------------------ATATTT...............................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAATTGTT-GG------------------------------------ATATT................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GATCTCAGGATCTATAAAAG-----------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATTGTT-GG------------------------------------ATATTTT..............................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATTGTT-GG------------------------------------ATATTTTTT............................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CCAACGCCTACAAACCATAG.........................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATTGTT-GG------------------------------------ATATTTT..............................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGTT-GG------------------------------------ATATTTT..............................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACACTTTTGAACA--ATT...............................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-GTCGATCTA----GTCAT-------------AA----TATCTCAGAATTTATAAAGG-----------------------CTA-----GAAGGTTGATATTCAGCATAC---------------TGATT------C-----T--------AGAGACAAAGACGCAGCGCAAAATTGCCAAAA--TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------TAAGCC----------CA---------TT--------------TTCGATATTTTTTTTTTAAT-------------------------TATATTGAATATTA----------ATTA-----------------------------------------T---------TATTATATATTTTTTATATTATA---------------------TCATAATTTAATTAGACAT--GTAAATTTCTA---------TCGAATT-GC--------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2551.40700000020410000000
............................................................................................................AC---------------TGATT------C-----T--------AGAGACAAAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
....................................................................................................TTCAGCATAC---------------TGATT------C-----T--------AGAGACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200000001010000000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGCAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.40800000040011020000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.40800000010610000000
..............................................................................................................................................T--------AGAGACAAAGACGCAGCGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.35700000000000070000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.30600000050001000000
................................................................................................................................TT------C-----T--------AGAGACAAAGACGCAGCGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000100000000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGCGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.25500000000410000000
.........................................................................................................................................................AGACAAAGACGCAGCGCAAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100000000000010000
................................................................................................................................TT------C-----T--------AGAGACAAAGACGCAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.20400000010000030000
...............................................................................................................................ATT------C-----T--------AGAGACAAAGACGCAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300000000000030000
..........................................................................................................................................................GACAAAGACGCAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.15300000000003000000
........................................................................................................................................C-----T--------AGAGACAAAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.15300000002010000000
................................................................................................................................TT------C-----T--------AGAGACAAAGACGCAGCGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300000000000030000
..............................................................................................................................GATT------C-----T--------AGAGACAAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15310000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCTA---------TCGAATT-GC--------------------C2070.14100000000001000000
...................................................ATAAAGG-----------------------CTA-----GAAGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17100.10100000000001000000
..............................................................................................................................GATT------C-----T--------AGAGACAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTA---------TCGAATT-GC--------------------C15100.10100000000001000000
...................................................ATAAAGG-----------------------CTA-----GAAGGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10100000000001000000
...................................................ATAAAGG-----------------------CTA-----GAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16120.08100000000001000000
..............................................................................................................................GATT------C-----T--------AGAGACAAAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
..............................................................................................................................................T--------AGAGACAAAGACGCAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000001000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
................................................................................................................................TT------C-----T--------AGAGACAAAGACGCAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000010000000
...............................................................................................................................ATT------C-----T--------AGAGACAAAGACGCAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
.................................................................................................................................T------C-----T--------AGAGACAAAGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
........................................................................................................................................................GAGACAAAGACGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
..............................................................................................................................GATT------C-----T--------AGAGACAAAGACGCAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
.................................................................................................................................T------C-----T--------AGAGACAAAGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
droSec2
TGTCCG------------TATAATCGTA----AA----GTTCTTGGGTACTATAAGAG-----------------------CTA-----CCT---TGGAATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCCACGCCCACTGTAACGCCCAGGGATCATGC--TCCAGAATA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAC---------TGTTTCT-GCCCCTTT--TG----TTTTAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGATTGTCCG----TTCGTAAGAACGTA----GA----ATTCTTGGGAGCTACAAGAG-----------------------CTG-----GAAAGTTA------TACACGC---------------AGATT------C-----T--------AGTAACGCCCACACAGCACAAGTTTGCCTTAA--ATA----------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTT----------AA---------TA--------------TTTTAT-------TTTTAAT----------------------------------ATAAT--------AT--TT-----------------------------------------A---------CTTTAATATTTATATAATATT-----------------------TTATT--------------------------------------------AC---TTA----------CATACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTCCGTTTG----TCCGTATCAACGCC----TC----GATCTCAGGAACTACAAACG-----------------------CTA-----GAATGTTGAGATTATGCTT----------------------------C-----C--------AGAGACATAGACGCAGCGCAAGTTGTTTAC-----------------------------------------------------------------------------AAATGTTGCCACGCCCAC------------AAACCGCACAA-------------------------------------------------AACTGTCACGCC-----------------------------------------------------------ACACTTTT----------------------------------------GAAAAATGTGATATTTT--------------------------------------TTAATTCTT-----------------------AAATAAATAT--------T--GTAAATTTCTA---------TGTATTT-GC---CAAAATA------CTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................TCTCAGGAACTACAAACG-----------------------CTA-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010000

Generated: 05/17/2015 at 10:53 PM