dmo_671

exon [dmoj_GLEANR_15863:1]; CDS [Dmoj\GI15097-cds]; exon [dmoj_GLEANR_15863:2]; CDS [Dmoj\GI15097-cds]; intron [Dmoj\GI15097-in]

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTGATCGCAGCAAGAATTCCTTCTTCTTCCGCACGATTCTGGGAATGCAGGTGGGATGGAGCTCACCTTAATTGCCAAGTTGCAAAACCCGGTTATAAACATGGCTATACACACGGCTTGTAAATGTGTATCAGTTTGCATGCATGTATGGGTGGCAATTAGAATTGTGAATGGCTGTATATTTTATCTGAGTAATGTGACTTGGCAATTTCGTCAAGAATTGTTTATTATGTGCTAATAATAGATATTAGATAAGAAGAAACTGATTTGAAGCTTCTCTCTTTCACAATAGGTTTTGAGGCACGAGGAGTTCAAAGAAGGCTGCGATGCCGAATGCAACGG ************************************************..((((.((((((.......((((((((((((((.....(((((((..(((..(((((.((.(((((.(((((((........))))))).)).))).)).))))).........)))..)))))))..(((((.....))))).))))))))))))))(((.....))).((((((((((......))))))))))((((((.((......)).))))))))))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V049 head	V056 head
...............................................................................................................................................................................................................................TTTATTATGTGCTAAGGA.....................................................................................................	18	2	18	1.39	25	17	2	0	2	4
.....................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATGC............	21	3	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................TTCAAAGAAGGCTGCGATGCCGAAT.......	25	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GCAGGTTTTGAGGCACGAGGAGT...............................	23	2	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TTTTGAGGCACGAGGAGTTCAAAGAAG......................	27	0	1	1.00	1	0	0	1	0	0
...............ATTCCTTCTTCTTCCGCACGATTCTGGGA..........................................................................................................................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0	0
.................................................................................................................................................GTATGGGTGGCAAACAGGATT................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0
............................................................................................................................................................................................................................TTTTTTATTATGTGCTAAGAA.....................................................................................................	21	2	4	0.25	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGCTTATCTCTTTCACCA.....................................................	19	2	4	0.25	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................GAATTTAAAGAAGGTTGCGAT..............	21	3	5	0.20	1	0	1	0	0	0
.................................CGAGTTTGGGAATGCAGCT..................................................................................................................................................................................................................................................................................................	19	3	20	0.15	3	0	3	0	0	0
................................................................................................................................................................AGAATTGAGAATGCCGGTAT..................................................................................................................................................................	20	3	7	0.14	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................CACAATGGGTTTTGATGCAAG.....................................	21	3	9	0.11	1	0	0	1	0	0
........................................................................................................................................TGCCAGCATGTATGGGTG............................................................................................................................................................................................	18	2	17	0.06	1	1	0	0	0	0
.................................................................................................................................................................GAAGTGAGAATGCCTGTAT..................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0

CACTAGCGTCGTTCTTAAGGAAGAAGAAGGCGTGCTAAGACCCTTACGTCCACCCTACCTCGAGTGGAATTAACGGTTCAACGTTTTGGGCCAATATTTGTACCGATATGTGTGCCGAACATTTACACATAGTCAAACGTACGTACATACCCACCGTTAATCTTAACACTTACCGACATATAAAATAGACTCATTACACTGAACCGTTAAAGCAGTTCTTAACAAATAATACACGATTATTATCTATAATCTATTCTTCTTTGACTAAACTTCGAAGAGAGAAAGTGTTATCCAAAACTCCGTGCTCCTCAAGTTTCTTCCGACGCTACGGCTTACGTTGCC ************************************************..((((.((((((.......((((((((((((((.....(((((((..(((..(((((.((.(((((.(((((((........))))))).)).))).)).))))).........)))..)))))))..(((((.....))))).))))))))))))))(((.....))).((((((((((......))))))))))((((((.((......)).))))))))))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V041 embryo	V056 head	V110 male body	M060 embryo
................................................................................................................................................................................................................................................................................................................CTCGTCTAGTTTCTTCCGACACT...............	23	3	1	2.00	2	2	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCTCTCGTTTCTTCCGACACT...............	22	3	2	0.50	1	1	0	0	0
..................................................................................................TGTGGCGATATGTGTGACGAA...............................................................................................................................................................................................................................	21	3	3	0.33	1	0	1	0	0
........................................................................................................................................................................................................GAAGCGTTATAGCAGTTCTG..........................................................................................................................	20	3	3	0.33	1	0	0	1	0
.........CGTTCTTGAGTCAGAAGAA..........................................................................................................................................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:4777757-4778098 -	dmo_671	GTGATCGCAGCAAGAATTCCTTCTTCTTCCGCACGATTCTGGGAATGCAGGTGG--GAT---------------GGAGCTCACCTTAAT----------TGC------------------------------CAAGTTGCAAAACCCGGTTATAAACATGGCTATACACACGGCTTGTAAATGTGTATC-------AGT------TTGCATGCATG--TATGGGTGGCAATTAGAA----------------------------------------------TTGTGAATGG-CTGTAT----------ATTTTATCTGAGTAATGTGAC---------------------------TTGGCAATTTCGTCAAGAATTGTTTATTATGTGCTAATAA-------TAGATATTAGATAAGAA-----------G---AAACTG-ATTTGAAGC---TTCTCTCT---------------------------------------------------------------------------------------------------------T-----TCAC-AATAGGTTTTGAGGCACGAGGAGTTCAAAGAAGGCTGCGATGCCGAATGCAACGG
droVir3	scaffold_12970:5210829-5211204 -	dvi_13166	GTGACCGTGCCAGGAATGCGTTCTTCTTTCGCAACATACTGGGAATGCAGGTAA--TAT---------------GAAGGACAG----AC----------TGGCG-AGTTAC---GTCT------T--GGGGCTAACTTGCA-AGCCCGGTTATAAGCGCAAC---------GTC--ATATGTGTGTGTCTGTATTTACT------GTACATATGTA--TATGGG-GGCAATTAC---------------------------------------------------------C-CAGAAT-------ATCTAATTATCTGAGAAACATGACATGGCACTGTGTAAGTCAATACAAT----------GCCAGCCAGAAGCGT--ATTA------AACT----------AAAATAAGATAAGCA-----------C---CGGCTGGCGTTTAAAT---GCTGATTGTTT----------------T---------------------------TTT---------------------------TTTTGTTTATCCCA------T----T---CAATACTGG-AATAGGTATTGCGGCATGAGGAGTTCAAGGAAGGCTGCGATGCGGAATGCAATGG
droGri2	scaffold_15081:148080-148156 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TGTAA---TTTTT---ATTTTTTA----------------------TT----------------------------------------------------------------------------------------GTTAGGTTTTGCGCCATGAGGAATTTAAAGAAGGCTGCGATGCGGAATGCAATGG
droWil2	scf2_1100000004515:2380598-2380665 +		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCTCTTT-ATTAGATTTTGCGTCACGAGGAGTTCAAGGAGGGCTGCGATGCTGAATGCAATGG
dp5	XL_group1e:9532434-9532742 -	dps_2766	GAGATCGGGCCAAGAACGCCTTCTTCTTCCGAAGCATCCTGGGAATGAAGGTGG--GTATTTTTCTTATGATTTGC---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTGCGGACCAACCAA---CGTTATCGCTGCG---------GG-------GTA-------C--AAGG---TTTTTTTTATCTGAACAACGCAA----------------------------TTGGCAATC---AGTGGCT-----GCTGACTGACTAATTA-AAAGCCCAGATGCCA--------GATAGCG----GTAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------CCGACAA----------------CTAATGCTGTCTCTGTCTGTC----T------GGGCCA-AACAGGTTTTGCGTCACGAGGAATTTAAAGAAGGTTGCGATGCCGAATGCAATGG
droPer2	scaffold_22:679113-679421 +		GAGATCGGGCCAAGAATGCCTTCTTCTTCCGCCGCATCCTGGGAATGAAGGTGG--GTATTTTTCTTATGATTTGT---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTTCGGACCAACCAA---CGTTATCGCTGTG---------GG-------GTA-------C--AAGG---TTTTTTTTATCTGAACAACGCAA----------------------------TTGGCAATC---AGTGGCT-----GCTGACTGACTAATTA-AAAGCCCAGATGCCA--------GATAGCG----GTAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------CCGACAA----------------CTAATGCTGTCTCTGTCTGTC----T------TGGCCA-AACAGGTTTTGCGTCACGAGGAATTTAAAGAAGGTTGCGATGCCGAATGCAATGG
droAna3	scaffold_13334:1309705-1310049 +	dan_2192	GAGATCGGGCGAAGAACGCCTTCTTCTTCCGCCAAATTCTGGGCATGAAGGTAA--GCAG-------ATCGTTTGG---G-------------------------AGGGG---------GTGGAG--GGGGA--------------------------------------------------------------------------------------------------------TCAGGAG---T--------CCTTATCGG---GAAAGTTATAGTGTGTTATGTCTGG-AAGCAGACA-------TTTTTATCTCAACGACGTGTCAACGAC-----------------------------T---TG------------------GCTAATTAAAAAGCCGCGATGCCC-------CGATAATTTT---TAATGACTG-TGTAA---CTTTT--T-TTTCTTC----------------------TTTTTTTTTTTTTATTTTGT----TTGC-T---------GCGTGTTCTTATCTA--TCTATCTCC------C----TCTCTCACATGACAAACAGGTTCTGCGGCATGAGGAGTTCAAGGAAGGCTGTGACGCGGAATGCAATGG
droBip1	scf7180000395198:56962-57298 +		GAGATCGGGCCAAGAACGCCTTCTTCTTCCGCCAAATTCTGGGCATGAAGGTAA--GTG--------A-----TGGG--ATGG-------------------------------------TGGGGGGGGGTTGATCAT--------------------------------------------------------------------------CAGGAA----------------------------T--------CCTTATCGG---GAAAGTTATAGTATGTTATGTCTGG-ACGCAGACGTCTTTTTTTTTTATCTCAACGACGTGTCAACGAC-----------------------------T---TG------------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTT---TAATGACTG-TGTAA---CTTTT--T-TTTTT------------------------TTG----------------TT---TTGC-T---------GCGTGTTCTTATCAG--TCTATCTCA------CTCTCTCTCTCACATGACAAACAGGTTTTGCGGCATGAGGAGTTCAAAGAAGGCTGTGACGCGGAATGCAATGG
droKik1	scf7180000302592:1531321-1531695 -		GCGATCGGGCTAAAAACGCCTTTTTCTTCCGTCAAATCCTTGGAATGAAGGTGA--GCG---------------AAAGGGAG------GTTGATATTACCGGTGGAATAAGA-------GGGGA--GGAGTTTATCAC------------------------------------------------------------TTTACGAGTGCATGCATAAA------------------TCGGCAGACTT--------TCTTATCGC-------------TGCTGTTGTGTCTGGGCCGGAT-----------TTTTATCTGAACAACGTGTCAACGAC-----------TAAACAGCAAC-------T---GGCAGTC-------------GCTAATTAAAAAGCCCAGATGCCC-------AGATAAAGTCATATAATGACGG-TGTAA---CTATTATTATTCCCACTCTTCAA------------------------------------------------AATTAATCG-------------TGCTCTCTCG------T----TCTGTCTCGCGGC-AACAGGTACTGCGGCATGAGGAGTTCAAAGAAGGTTGTGACGCCGAATGCAATGG
droFic1	scf7180000454077:408473-408775 -		GAGATCGAGCTAAAAATGCATTTTTCTTTCGCCAAATCTTGGGAATGAAGGTGA--GAA---------------GAG-----------------------------------------------G--GGAGATATCTT--------------------------------------------------------------------------CTAAAA------------------TCGGTAGACTT--------TCTTATCGT-------------GATTGTTATGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------A---CACGACT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACGA-TGTTAAAAT---TTTGTTTCTTGCT----------TTGTT---------------------------TTT---------------------------CTATCGCCATCTCG------C----T--------TGGC-AACAGGTGTTGCGGCATGAGGAATTCAAGGAGGGCTGCGATGCCGCCTGCAATGG
droEle1	scf7180000490214:986896-987218 +		GAGATCGGGCCAAAAACTCATTTTTCTTTCGCCAAATCTTGGGAATGACGGTAAAAGTT---------------GGG--G----------------------------------------AAATG--GGAGATATCTT--------------------------------------------------------------------------TCCAAA------------------TCGGCAGACTT--------CCTTATCG----A---------GGCTGTGGTGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------G---CGCAGCC-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACGA-TGTAAAAAT---AATG--------------------TACTTTTCTATTG----------------TTT-TTTGCTT---------GCG-------------TGCTATCTTG------C----TTTCTCACACGGC-AACAGGTGCTACGGCATGAGGAGTTTAAGGAGGGATGCGATGCCGCATGCAACGG
droRho1	scf7180000780082:290927-290981 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGATGCCGCCTGCAACGG
droBia1	scf7180000302187:584580-584905 +		GCGACCGCGCCAAGAACGCCTTTTTCTTCCGCCAGATACTGGGAATGACGGTGA--GCG---------------GGGGTG--G----GG----------CGGCGGGATAGCATCTTCCCG----G--GCAGCTATCTT--------------------------------------------------------------------------CCCGAC------------------TCGGCAGACTT--------TCTTATCGG---C---------AATTG-CACGTCTGG-CGGCG-------------TTTATCTGGACGTCTTGTCGACGTC-----------------------------G---CGCGTCC-------------GCTAATTGAGAAGCCCAGGTGCCG--------ACTAACATCATATAACGACGC-TGTTAAAAT---GGCCTTCTTTTCT--T------------------CTG----------------TCT-------------------------------------TTCCCC-----------CTTCCCCCACGGC-AACAGGTGCTGCGGCATGAGGAATTCAAGGAGGGGTGCGACGCCGCTTGCAACGG
droTak1	scf7180000415564:124821-124876 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGATGCCGAGTGCAACGG
droEug1	scf7180000405574:11552-11629 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTTG------C----TCGGTGTCACGAC-AACAGGTGCTGCGGCATGAGGAATTCAAGGAAGGATGTGATGCCGCCTGTAACGG
dm3	chrX:20898930-20899256 -		GAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATCTTGGGAATGACGGTAA--GCT---------------GGG--------------------------------T---------GTGGC---GGGCGTATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGCTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACAACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCATTTTTCTCTCATCGTTTTTGCTCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCAACGG
droSim2	x:19628551-19628878 -	dsi_22855	GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGAATGACGGTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGGGATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCTTTTTTCTCTCATCATTGTTGCGCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCAACGG
droSec2	scaffold_8:3184418-3184737 -		GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGAATGACGGTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGGGATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACAACGTGTCAACGAC-----------------------------G---CGCAACT-------------GCTAATTAAAAAGCC--------C--------GATAATGTCATATAATGACTG-TGCTAAAAT---TTCTTTTTTCTCTCATCATTGTTGCGCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCGTGCAACGG
droYak3	X:20110503-20110837 -		GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGCATGAAGGTGA--GTC---------------GTG--------------------------------T---------GGGCC---GGGTATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTTCCAGACTTCTTTATCGC---A---------GATTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGAACTACGTGTCAACGAC-----------------------------G---CGCGACT-------------GCTAATTAAAAAGCCCAGATGCCT--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCTTTTTTCTCCCACTATTGTTGTTCG---------------------------CTT---------------------------CTATCGCCATCTCG------T----TTGGTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTTAAGGAGGGCTGCGACGCCGCCTGCAACGG
droEre2	scaffold_4690:17475676-17476002 -		GAGATCGAGCGAAAAACTCCTTTTTCTTTCGCCAAATCTTGGGAATGTCGGTGA--GCG---------------GGG--------------------------------T---------GGGAT---GGGGATATCGT--------------------------------------------------------------------------CGGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------AGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACTACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTATTTTTTCTCCTATCATTGTTGCTCT---------------------------CTT---------------------------CTATCGCCATCTCG------C----TTGATCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGCTGCGACGCCGCTTGCAACGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GTGATCGCAGCAAGAATTCCTTCTTCTTCCGCACGATTCTGGGAATGCAGGTGG--GAT---------------GGAGCTCACCTTAAT----------TGC------------------------------CAAGTTGCAAAACCCGGTTATAAACATGGCTATACACACGGCTTGTAAATGTGTATC-------AGT------TTGCATGCATG--TATGGGTGGCAATTAGAA----------------------------------------------TTGTGAATGG-CTGTAT----------ATTTTATCTGAGTAATGTGAC---------------------------TTGGCAATTTCGTCAAGAATTGTTTATTATGTGCTAATAA-------TAGATATTAGATAAGAA-----------G---AAACTG-ATTTGAAGC---TTCTCTCT---------------------------------------------------------------------------------------------------------T-----TCAC-AATAGGTTTTGAGGCACGAGGAGTTCAAAGAAGGCTGCGATGCCGAATGCAACGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAGAAGGCTGCGATGCCGAAT.......	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAGGCACGAGGAGTTCAAAGAAG......................	27	1	1.00	1	0	0	0	0	1	0
...............ATTCCTTCTTCTTCCGCACGATTCTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1

droVir3

GTGACCGTGCCAGGAATGCGTTCTTCTTTCGCAACATACTGGGAATGCAGGTAA--TAT---------------GAAGGACAG----AC----------TGGCG-AGTTAC---GTCT------T--GGGGCTAACTTGCA-AGCCCGGTTATAAGCGCAAC---------GTC--ATATGTGTGTGTCTGTATTTACT------GTACATATGTA--TATGGG-GGCAATTAC---------------------------------------------------------C-CAGAAT-------ATCTAATTATCTGAGAAACATGACATGGCACTGTGTAAGTCAATACAAT----------GCCAGCCAGAAGCGT--ATTA------AACT----------AAAATAAGATAAGCA-----------C---CGGCTGGCGTTTAAAT---GCTGATTGTTT----------------T---------------------------TTT---------------------------TTTTGTTTATCCCA------T----T---CAATACTGG-AATAGGTATTGCGGCATGAGGAGTTCAAGGAAGGCTGCGATGCGGAATGCAATGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................CATACTGGGAATGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTCAAGGAAGGC....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......GTGCCAGGAATGCGTTCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTCAAGGAAGGCTGC.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAAGGCTGCGATGCGGAATGC.....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTTCTTTCGCAACATACTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGATGCGGAATGCA....	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAAGGCTGCGATGC............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTTCTTTCGCAACATACTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCA------T----T---CAATACTGG-AATAG..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TGTAA---TTTTT---ATTTTTTA----------------------TT----------------------------------------------------------------------------------------GTTAGGTTTTGCGCCATGAGGAATTTAAAGAAGGCTGCGATGCGGAATGCAATGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCTCTTT-ATTAGATTTTGCGTCACGAGGAGTTCAAGGAGGGCTGCGATGCTGAATGCAATGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAGTTCAAGGAGG......................	21	1	3.00	3	0	0	1	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTCACGAGGAGTTCAAGGA........................	23	1	2.00	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCACGAGGAGTTCAAGGAGG......................	24	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTTCAAGGAGGGCTGC.................	20	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTTGCGTCACGAGG..................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGGGCTGCGATGCT...........	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAGTTCAAG..........................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTGCGATGCTGAATGCAATGG	25	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAGTTCAAGGAGGGC....................	23	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAGTTCAAGGAGGGCTGC.................	26	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTCACGAGGAGTTCAAGGAGGG.....................	26	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGCGTCACGAGGAGTTCAA...........................	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAGGGCTGCGATGCTGAATGC.....	28	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAGGGCTGCGAT..............	19	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAGTTCAAGGAGGGCTGCG................	27	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAGGGCTGCGA...............	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGAGGGCTGCGATGCTGAATGC.....	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGCGTCACGAGGAGTTCAAGGA........................	27	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTAGATTTTGCGTCACGAG...................................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGTCACGAGGAGTTCAAGGAGG......................	26	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGCGTCACGAGGAGTTCAAGGA........................	26	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGGGCTGCGATGCTGAATG......	26	1	1.00	1	0	0	1	0	0

dp5

GAGATCGGGCCAAGAACGCCTTCTTCTTCCGAAGCATCCTGGGAATGAAGGTGG--GTATTTTTCTTATGATTTGC---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTGCGGACCAACCAA---CGTTATCGCTGCG---------GG-------GTA-------C--AAGG---TTTTTTTTATCTGAACAACGCAA----------------------------TTGGCAATC---AGTGGCT-----GCTGACTGACTAATTA-AAAGCCCAGATGCCA--------GATAGCG----GTAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------CCGACAA----------------CTAATGCTGTCTCTGTCTGTC----T------GGGCCA-AACAGGTTTTGCGTCACGAGGAATTTAAAGAAGGTTGCGATGCCGAATGCAATGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
GAGATCGGGCCAAGAACGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	137.00	137	0	0	0	0	0	0	0	0	137	0
GAGATCGGGCCAAGAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	100.00	100	0	0	0	0	0	0	0	0	100	0
..GATCGGGCCAAGAACGCCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	12	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAATTTAAAGAAGGTTG..................	21	1	10.00	10	0	1	0	0	0	0	2	0	7	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATGC............	21	1	9.00	9	0	0	0	0	0	0	4	0	5	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGATG.............	21	1	8.00	8	0	0	0	0	0	0	7	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAGGAATTTAAAGAAGG.....................	21	1	7.00	7	0	0	0	0	0	0	1	0	6	0
.AGATCGGGCCAAGAACGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	1	0	0	0	0	0	0	0	5	0
.AGATCGGGCCAAGAACGCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	2	0	0	0	0	0	0	3	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTAAAGAAGGTTGCG................	21	1	5.00	5	0	0	0	0	0	0	0	0	5	0
.AGATCGGGCCAAGAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAATTTAAAG.........................	19	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAATTTAAAGA........................	20	1	4.00	4	0	0	0	0	0	0	3	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAATTTAAAGAAGGTT...................	20	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..........................TTCCGAAGCATCCTGGGAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTCACGAGGAATTTAAA..........................	21	1	3.00	3	0	0	0	0	0	0	0	0	3	0
GAGATCGGGCCAAGAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	2	0	0	0	0	0	0	0	1	0
.....................TCTTCTTCCGAAGCATCCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGGTTGCGATGC............	19	1	3.00	3	0	0	0	0	0	1	1	0	1	0
...............................AAGCATCCTGGGAATGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	0	0	1	0
.............................CGAAGCATCCTGGGAATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------.....................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGAAGGTTGCGATG.............	19	1	2.00	2	0	0	0	0	0	0	1	0	1	0
GAGATCGGGCCAAGAACGCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	0	0	0	1	0
.........CCAAGAACGCCTTCTTCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................TATCTGAACAACGCAA----------------------------TTGGC................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGATGC............	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0
GAGATCGGGCCAAGAACGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGTCACGAGGAATTTA............................	20	1	2.00	2	0	0	0	0	0	0	1	0	1	0
..........................TTCCGAAGCATCCTGGGAATGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................CTTCCGAAGCATCCTGGGAATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------CT...................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....CGGGCCAAGAACGCCTTCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..GATCGGGCCAAGAACGCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTTAAAGAAGGTTGCGT...............	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGCCGAATGC.....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CCAAGAACGCCTTCTTCTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATG.............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........AAGAACGCCTTCTTCTTCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................TTCTTCTTCCGAAGCATCCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................A--------GATAGCG----GTAATGACTC-TG.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
GAGATCGGGCCAAGAACGCCTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................CCAACCAA---CGTTATCGCTGCG---------.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGCGATGCCGAATGC.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CCAAGAACGCCTTCTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................CTGGGAATGAAGGTGG--GTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGAT..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................AAGCATCCTGGGAATGAAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCACGAGGAATTTAAA..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTAAAGAAGGTTGC.................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAATTTAAAGA........................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................TGGCAATC---AGTGGCT-----GCTGA........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAAGAACGCCTTCTTCTTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAGGAATTTAAAGAAGGTTGC.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GAGATCGGGCCAAGAACGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.AGATCGGGCCAAGAACGCCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................GAAGCATCCTGGGAATGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGATGCCGA.........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GAGATCGGGCCAAGAACGCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTGCGATGCCGAATGCTT...	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAATTTAAAGAA.......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..GATCGGGCCAAGAACGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................C---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTGCGGACCA...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............GAACGCCTTCTTCTTCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................TGC---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTGCGGACCA...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAATTTAAAGAAGGTTGC.................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................A------------------TCTGCGGACCAACCAA---CGTT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTCTGTCTGTC----T------GGGCCA-AACAGG.................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGCGATGCCGAATGCA....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAGGAATTTAAAGAAGGTT...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGTTGCGATGCCGAA........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTTTTGCGTCACGAG...................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGATGCCA--------GATAGCG----GTAATG....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGAAGGTTGCGATGC............	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............AGAACGCCTTCTTCTTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGGAATTTAAAGAAGG.....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................TTCTTCCGAAGCATCCTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGTCACGAGGAATTTAAAG.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGTCTGTC----T------GGGCCA-.......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............ACGCCTTCTTCTTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTTTTATCTGAACAACGCAA----------------------------T....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGGTTGCGATGCC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.AGATCGGGCCAAGAACGCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAA----------------------------TTGGCAATC---AGTGGCT-----G............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..GATCGGGCCAAGAACGCCTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................CTGACTGACTAATTA-AAAGC.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGATGCCGAATGCAATGG	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTGCGATGCCGAATG......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATGCC...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CCGAAGCATCCTGGGAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................TATCGCTGCG---------GG-------GTA-------C--ATT............................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAGATCGGGCCAAGAATGCCTTCTTCTTCCGCCGCATCCTGGGAATGAAGGTGG--GTATTTTTCTTATGATTTGT---G-------------------------AATA----------------------------------------------------------------------------------------------------------GGA------------------TCTTCGGACCAACCAA---CGTTATCGCTGTG---------GG-------GTA-------C--AAGG---TTTTTTTTATCTGAACAACGCAA----------------------------TTGGCAATC---AGTGGCT-----GCTGACTGACTAATTA-AAAGCCCAGATGCCA--------GATAGCG----GTAATGACTC-TGTAA---TTTTT----------------------C--------------------------------------CCGACAA----------------CTAATGCTGTCTCTGTCTGTC----T------TGGCCA-AACAGGTTTTGCGTCACGAGGAATTTAAAGAAGGTTGCGATGCCGAATGCAATGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAATTTAAAGAAGGTTG..................	21	1	7.00	7	0	0	0	0	0	7
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAATTTAAAGA........................	20	1	5.00	5	0	0	0	0	0	5
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATGC............	21	1	4.00	4	0	0	0	0	0	4
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGAAGGTTGCGATGC............	20	1	2.00	2	0	0	1	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAATTTAAAGAAGGTTGC.................	26	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACGAGGAATTTAAAG.........................	19	1	2.00	2	0	0	0	0	0	2
........................TCTTCCGCCGCATCCTGGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAGGTTGCGATGCCG..........	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGATG.............	20	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAGGAATTTAAAGAAGGA....................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCACGAGGAATTTAAAGT........................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGGTTGCGATGCCG..........	21	1	1.00	1	0	0	0	0	0	1
..........................TTCCGCCGCATCCTGGGAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................CTTCTTCCGCCGCATCCTGGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTAAAGAAGGTTGCG................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGATT.............	21	1	1.00	1	0	0	0	0	0	1
GAGATCGGGCCAAGAATGCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGTCACGAGGAATTTAA...........................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAGAAGGTTGCGATG.............	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGGTTGCGATGCC...........	20	1	1.00	1	0	0	0	0	0	1
.............................CGCCGCATCCTGGGAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................GCCGCATCCTGGGAATGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTGCGATGCCGAATGC.....	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGAAGGTTGCGATG.............	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCGTCACGAGGAATTTA............................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAAGGTTGCGAT..............	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAGGTTGCGATGCCGA.........	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAATTTAAAGAAGGTTGA.................	22	1	1.00	1	0	0	0	0	0	1
..........................TTCCGCCGCATCCTGGGAATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGTTGCGATGCCGAAT.......	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AACAGGTTTTGCGTCACGAG...................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGAGGAATTTAAAGA........................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTTAAAGAAGGTTGCGA...............	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTAAAGAAGGTTGCG................	19	1	1.00	1	0	0	0	0	0	1
...............................CCGCATCCTGGGAATGAAGGTTT--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	1

droAna3

GAGATCGGGCGAAGAACGCCTTCTTCTTCCGCCAAATTCTGGGCATGAAGGTAA--GCAG-------ATCGTTTGG---G-------------------------AGGGG---------GTGGAG--GGGGA--------------------------------------------------------------------------------------------------------TCAGGAG---T--------CCTTATCGG---GAAAGTTATAGTGTGTTATGTCTGG-AAGCAGACA-------TTTTTATCTCAACGACGTGTCAACGAC-----------------------------T---TG------------------GCTAATTAAAAAGCCGCGATGCCC-------CGATAATTTT---TAATGACTG-TGTAA---CTTTT--T-TTTCTTC----------------------TTTTTTTTTTTTTATTTTGT----TTGC-T---------GCGTGTTCTTATCTA--TCTATCTCC------C----TCTCTCACATGACAAACAGGTTCTGCGGCATGAGGAGTTCAAGGAAGGCTGTGACGCGGAATGCAATGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................TTGG---G-------------------------AGGGG---------GTGGAG--GGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAAGGCTGTGACGCGGA.........	24	1	5.00	5	1	0	0	1	1	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGCGGAATGCAATGG	19	1	4.00	4	1	0	0	0	3	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCGGCATGAGGAGTTCAAGGAA.......................	27	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGCGGAATGCAATG.	18	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAAGGCTGT.................	23	1	2.00	2	2	0	0	0	0	0
........................................................................TTGG---G-------------------------AGGGG---------GTGGAG--GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
.............GAACGCCTTCTTCTTCCGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................ATTCTGGGCATGAAGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGAAGGCTGTGACGCGGA.........	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACGCGGAATGCAATG.	21	1	1.00	1	1	0	0	0	0	0
...................................................................ATCGTTTGG---G-------------------------AGGGG---------GTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGCTGTGACGCGGA.........	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGTGACGCGGAATGCAATGG	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACGCGGAATGCAATGG	22	1	1.00	1	0	0	0	0	1	0
........................................................................TTGG---G-------------------------AGGGG---------GTGGAG--GGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
............................CCGCCAAATTCTGGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............AACGCCTTCTTCTTCCGCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCGGCATGAGGAGTTCAAG..........................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAAGGCTGTGA...............	25	1	1.00	1	1	0	0	0	0	0
.........................................................................TGG---G-------------------------AGGGG---------GTGGAG--GGGGA--------------------------------------------------------------------------------------------------------TCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................TCCGCCAAATTCTGGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................GCCTTCTTCTTCCGCCAAATTCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACGCGGAATGCAATG.	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTTCAAGGAAGGCT...................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACGCGGAATGCAATGG	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAAGGCTGTGACGC............	21	1	1.00	1	0	0	0	0	1	0

droBip1

GAGATCGGGCCAAGAACGCCTTCTTCTTCCGCCAAATTCTGGGCATGAAGGTAA--GTG--------A-----TGGG--ATGG-------------------------------------TGGGGGGGGGTTGATCAT--------------------------------------------------------------------------CAGGAA----------------------------T--------CCTTATCGG---GAAAGTTATAGTATGTTATGTCTGG-ACGCAGACGTCTTTTTTTTTTATCTCAACGACGTGTCAACGAC-----------------------------T---TG------------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTT---TAATGACTG-TGTAA---CTTTT--T-TTTTT------------------------TTG----------------TT---TTGC-T---------GCGTGTTCTTATCAG--TCTATCTCA------CTCTCTCTCTCACATGACAAACAGGTTTTGCGGCATGAGGAGTTCAAAGAAGGCTGTGACGCGGAATGCAATGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGATCGGGCTAAAAACGCCTTTTTCTTCCGTCAAATCCTTGGAATGAAGGTGA--GCG---------------AAAGGGAG------GTTGATATTACCGGTGGAATAAGA-------GGGGA--GGAGTTTATCAC------------------------------------------------------------TTTACGAGTGCATGCATAAA------------------TCGGCAGACTT--------TCTTATCGC-------------TGCTGTTGTGTCTGGGCCGGAT-----------TTTTATCTGAACAACGTGTCAACGAC-----------TAAACAGCAAC-------T---GGCAGTC-------------GCTAATTAAAAAGCCCAGATGCCC-------AGATAAAGTCATATAATGACGG-TGTAA---CTATTATTATTCCCACTCTTCAA------------------------------------------------AATTAATCG-------------TGCTCTCTCG------T----TCTGTCTCGCGGC-AACAGGTACTGCGGCATGAGGAGTTCAAAGAAGGTTGTGACGCCGAATGCAATGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGATCGAGCTAAAAATGCATTTTTCTTTCGCCAAATCTTGGGAATGAAGGTGA--GAA---------------GAG-----------------------------------------------G--GGAGATATCTT--------------------------------------------------------------------------CTAAAA------------------TCGGTAGACTT--------TCTTATCGT-------------GATTGTTATGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------A---CACGACT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACGA-TGTTAAAAT---TTTGTTTCTTGCT----------TTGTT---------------------------TTT---------------------------CTATCGCCATCTCG------C----T--------TGGC-AACAGGTGTTGCGGCATGAGGAATTCAAGGAGGGCTGCGATGCCGCCTGCAATGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGATCGGGCCAAAAACTCATTTTTCTTTCGCCAAATCTTGGGAATGACGGTAAAAGTT---------------GGG--G----------------------------------------AAATG--GGAGATATCTT--------------------------------------------------------------------------TCCAAA------------------TCGGCAGACTT--------CCTTATCG----A---------GGCTGTGGTGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------G---CGCAGCC-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACGA-TGTAAAAAT---AATG--------------------TACTTTTCTATTG----------------TTT-TTTGCTT---------GCG-------------TGCTATCTTG------C----TTTCTCACACGGC-AACAGGTGCTACGGCATGAGGAGTTTAAGGAGGGATGCGATGCCGCATGCAACGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGATGCCGCCTGCAACGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCGACCGCGCCAAGAACGCCTTTTTCTTCCGCCAGATACTGGGAATGACGGTGA--GCG---------------GGGGTG--G----GG----------CGGCGGGATAGCATCTTCCCG----G--GCAGCTATCTT--------------------------------------------------------------------------CCCGAC------------------TCGGCAGACTT--------TCTTATCGG---C---------AATTG-CACGTCTGG-CGGCG-------------TTTATCTGGACGTCTTGTCGACGTC-----------------------------G---CGCGTCC-------------GCTAATTGAGAAGCCCAGGTGCCG--------ACTAACATCATATAACGACGC-TGTTAAAAT---GGCCTTCTTTTCT--T------------------CTG----------------TCT-------------------------------------TTCCCC-----------CTTCCCCCACGGC-AACAGGTGCTGCGGCATGAGGAATTCAAGGAGGGGTGCGACGCCGCTTGCAACGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGATGCCGAGTGCAACGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTTG------C----TCGGTGTCACGAC-AACAGGTGCTGCGGCATGAGGAATTCAAGGAAGGATGTGATGCCGCCTGTAACGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATCTTGGGAATGACGGTAA--GCT---------------GGG--------------------------------T---------GTGGC---GGGCGTATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGCTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACAACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCATTTTTCTCTCATCGTTTTTGCTCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCAACGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................CGGCAAATCTTGGGAATGACGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................ATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------C..........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TTCTTCTTTCGGCAAATCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCATGAGGAGTTCAAG..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAT---TTCATTTTTCTCTCATC..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTG-TGTTAAAAT---TTCATTTTTCTC.......................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CTTATCGC---A---------GGCTGTTGTGTC.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTTCGGCAAATCTTGGGAATGACGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GGAATGACGGTAA--GCT---------------GGG--------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGAATGACGGTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGGGATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGAACAACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCTTTTTTCTCTCATCATTGTTGCGCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCAACGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................CGCCAAATCTTGGGAATGACGGTGC--T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................GGG--------------------------------A---------GTGGTG--GGGGATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................................................................................................................CGC---A---------GGTTGTTGTGTCTG.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTCGCCAAATCTTGGGAATGACGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................ACGGTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ATCTGAACAACGTGT.................................................................................................................................................................................................................................................................................................................	15	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................GTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGGGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................TTTCGCCAAATCTTGGGAATGACGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TT--------CCTTATCGC---A---------GGTTGTTGTGTCTG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAAACGCCTTCTTCTTTCGCCAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGCGGCATGAGGAGTTCAAGGAG.......................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATGCGACGCAGCT........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGAATGACGGTGA--GCT---------------GGG--------------------------------A---------GTGGTG--GGGGATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------GGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACAACGTGTCAACGAC-----------------------------G---CGCAACT-------------GCTAATTAAAAAGCC--------C--------GATAATGTCATATAATGACTG-TGCTAAAAT---TTCTTTTTTCTCTCATCATTGTTGCGCC---------------------------CTT---------------------------CTATCGCCATCCCG------C----TCGTTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCGTGCAACGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................TTCTTCTTTCGCCAAATCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGGATGCGACGCAGCGTGCAACG.	27	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGGAGTTCAAGGAG.......................	18	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................ACTT--------CCTTATCGC---A---------GGTTGTTG.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATGCGACGCAGCGTGCAACG.	25	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAGGGATGC.................	23	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................GTCTGG-CTGTAG-----------TTTTATCTGGA.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

GAGATCGGGCGAAAAACGCCTTCTTCTTTCGCCAAATCTTGGGCATGAAGGTGA--GTC---------------GTG--------------------------------T---------GGGCC---GGGTATATCGC--------------------------------------------------------------------------CAGAAA------------------TCGGCAGACTTCCAGACTTCTTTATCGC---A---------GATTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGAACTACGTGTCAACGAC-----------------------------G---CGCGACT-------------GCTAATTAAAAAGCCCAGATGCCT--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTCTTTTTTCTCCCACTATTGTTGTTCG---------------------------CTT---------------------------CTATCGCCATCTCG------T----TTGGTCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTTAAGGAGGGCTGCGACGCCGCCTGCAACGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................ACGTGTCAACGAC-----------------------------G---CGCGACT-------------GCTAAT...............................................................................................................................................................................................................................................	27	1	14.00	14	0	0	0	0	0	0	0	0	0	0	14
...................CTTCTTCTTTCGCCAAATCTTGGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTTAAGGAG.......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTTAAGGAGGGCT...................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ACGCCTTCTTCTTTCGCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGACGCCGCCTGCAAC..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GAAAAACGCCTTCTTCTTTCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................TTCTTCTTTCGCCAAATCTTGGGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTTAAGGAGGGCTGC.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTTAAGGA........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GCCTTCTTCTTTCGCCAAATCTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGCGGCATGAGGAGTTTAA...........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGGAGGGCTGCGACGCC...........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................TTCTTCTTTCGCCAAATCTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAGGGCTGCGACGCCGCCT.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGCGACGCCGCCTGC.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CTTCTTTCGCCAAATCTTGGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTTAAGGAGGGCTGC.................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGGAGTTTAAGGAGGG.....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGAGTTTAAGGAGG......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTTAAGGAGG......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTTAAGGAGGGC....................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

GAGATCGAGCGAAAAACTCCTTTTTCTTTCGCCAAATCTTGGGAATGTCGGTGA--GCG---------------GGG--------------------------------T---------GGGAT---GGGGATATCGT--------------------------------------------------------------------------CGGAAA------------------TCGGCAGACTT--------CCTTATCGC---A---------AGTTGTTGTGTCTGG-CTGTAG-----------TTTTATCTGGACTACGTGTCAACGAC-----------------------------G---CGCGGCT-------------GCTAATTAAAAAGCCCAGATGCCC--------GATAATGTCATATAATGACTG-TGTTAAAAT---TTATTTTTTCTCCTATCATTGTTGCTCT---------------------------CTT---------------------------CTATCGCCATCTCG------C----TTGATCGCACGGC-AACAGGTGCTGCGGCATGAGGAGTTCAAGGAGGGCTGCGACGCCGCTTGCAACGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCATGAGGAGTTCAAGGAGG......................	24	1	6.00	6	0	0	0	0	0	0	6
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAGG......................	18	1	3.00	3	0	1	0	0	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAGGAGTTCAAGGAGGGCTGC.................	26	1	2.00	2	0	0	0	0	1	1	0
..GATCGAGCGAAAAACTCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.......................TTCTTTCGCCAAATCTTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.....................TTTTCTTTCGCCAAATCTTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGCGGCATGAGGAGTT..............................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCT---------------------------CTT---------------------------CTATCGCCATCT..................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAGGGCTA..................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GG-CTGTAG-----------TTTTATCTGGACTA......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGCGACGCCGCTTGCA....	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCATGAGGAGTTCAAGGAGAAA....................	29	1	1.00	1	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCAAGGAGGGCTGCGA...............	20	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGAGGGCTGCGACGCCGCT........	25	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGACTT--------CCTTATCGC---A---------AGT..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.............................CGCCAAATCTTGGGAATGTCGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................AT---GGGGATATCGT--------------------------------------------------------------------------CGGAAA------------------TC............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................TGG-CTGTAG-----------TTTTATCTGGACTAC.....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...............ACTCCTTTTTCTTTCGCCAAATCTTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
............AAAACTCCTTTTTCTTTCGCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................G-----------TTTTATCTGGACTACGTGTC................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...........................TTCGCCAAATCTTGGGAATGTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGTTCAAGGAGGGC....................	20	1	1.00	1	0	0	0	0	0	1	0

dmo_671

scaffold_6473:4777807-4778048 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads