ID:

dmo_668

 Coordinate:

scaffold_6473:4065886-4066036 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_15888:1]; CDS [Dmoj\GI15123-cds]; intron [Dmoj\GI15123-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCACTTTATTGCCTATCCACCGGAAGATGATGCCGCCAGCTGGCCACAGGTAAGCGTCGCAAGGCAATCCAGCTGGGCTGTGATGGGTAGGGGTGGGGATAGCAGGGGGCAGGGCAGTGGCAGTGGCAGTGGGCTGGGCATGGGCATGGTCAACTCAGTCAGTTGAGAGCGAGAGCCTGGTGTGCCAGAGTCTGCCTGCATCCATCTTCAATTAGTCATCAATTGTGCCTTGCGACTTTTGCTTTTCGCG
**************************************************....((.((.....((.((((.(((..(((......)))...)))..)))).))..)).)).((((((..((..(((((....(((((((....((....((((((.....))))))..))....))))))).)))))..))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V056
head
 M060
embryo
 M046
female body
 V049
head
..............................................................................CTGTGATGGGTGGGGTTGAGG........................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0
.................................................................CCATCCAGCTGGGATGGGATGGG................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
........................................................................GCTGGGCTGTGAGAGGTACGGG............................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0
........................................................................................TGGCGGTGGGGATAGCAGGTGG............................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0
..................................................................................GCTGGGAAGAGGTGGGGATAGC................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
..........................................................................................GGGGTGGGTATGGCAGGGGG............................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0
.....................................................................................................................GTTGCTGTGGAAGTGGGCTGGG................................................................................................................ 22 3 3 0.33 1 0 0 0 1 0
.................................................................................................GGATAGGAGGGCGCAGGG........................................................................................................................................ 18 2 4 0.25 1 0 0 1 0 0
........................................................................................TAGGGCTGGGGTTAGCAGGC............................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1
........................................................................................TGGCGGTGGGGATAGCTGGG............................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0
..............................................................................................TGGGGATAGCGGGGGGGAT.......................................................................................................................................... 19 3 17 0.06 1 0 1 0 0 0

Anti-sense strand reads

CAGTGAAATAACGGATAGGTGGCCTTCTACTACGGCGGTCGACCGGTGTCCATTCGCAGCGTTCCGTTAGGTCGACCCGACACTACCCATCCCCACCCCTATCGTCCCCCGTCCCGTCACCGTCACCGTCACCCGACCCGTACCCGTACCAGTTGAGTCAGTCAACTCTCGCTCTCGGACCACACGGTCTCAGACGGACGTAGGTAGAAGTTAATCAGTAGTTAACACGGAACGCTGAAAACGAAAAGCGC
**************************************************....((.((.....((.((((.(((..(((......)))...)))..)))).))..)).)).((((((..((..(((((....(((((((....((....((((((.....))))))..))....))))))).)))))..))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body
..............................................................................................................................................CGCGAAGCAGTTGAGTCAG.......................................................................................... 19 3 19 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:4065836-4066086 - dmo_668 GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCCG------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGCCACAGGTAAGCGTCG-CA--------------AGGCAATCCAGCTGGGCTGTGATGGGTAGGGGTGGGG---------------------------------------------------------------------------------------------------------------------------------ATAG------CAGGGGGCAGGGC-------------------------------------------------------------------------------------------------AGTGGCAGTGGCAG------------------TGGGC---------TGGGCATGG-GCATGGTCAA-CTCAGTCAGTTGAGAGCGAGAGCCTG---GTGTGCCAGAGTCTGCCTGCATCCATCTTCAATTAGTCATCA-ATTG----TGCCTTGCGACTTTTGCTTTT-------------------CGCG-
droVir3 scaffold_12970:3206005-3206279 - GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCCG------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGCCTCAGGTAAGCGTCA-CAGCCTGACGATCTCA-------------------------------------GGGCGATCTCTCAAGCTTGGAGAGCGTG--CAAGTTCGCATAG--------------------------------TGGAGAGAGCATGGCAGAGAGCGAGAG----AGT------AAGAGA----------------------------------------------------------------------GCCAAGAGCAATGCGCATGCGCGCCAG--------GCCAGCAG----------------------------------------------------------------C------------------------------CGAGCATAGCCTA---GT------------GCCTG----CATCTCCAATTAGTCATCGGATTGC------CTTGCCACTTTTGCTTTTTTTTTTCATATTTTTTTTTGGCG-
droGri2 scaffold_15126:2788533-2788687 + GGTCTAC-TCACC------------------------------------T-CGAGTGGTT----------TGG--------------------------------------------------------------------------------------------------GTGGCTCAGGTGGTGCCGTCAACGCGACGAGCAAC-ACGAACTCGGGGCTATTGGG-----------------------------------------------------------C----------G---------------------------------------------------------------------------------------------------------------------GCGG------TGGCGGCAGTGGC-------------------------------------------------------------------------------------------------AGCACGGGTGGCGGCGGCGGTTCGAGTAGCAGTGGCA---------TGGGCAACATGAG----------------------------------------C--------------------------------------------------------------------------------------AGCTC-
droWil2 scf2_1100000004515:2932196-2932434 + GTCATTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCAG----------------CCGCTG---CTGCCG----------------------------------CAGTCGCTGT---------------------TAATGCTGCTGCTG-------------------CTGCTGCTTGGACACAGGTGAGTGTATATA-------------A-------------------------------------A----------AGAGGTGGGGAAAGGAG--GG----------GGGCAGCAGTAGGGGGAGGAGGTGAAAGGGAGTTGAAGAGAGGATGGCATGGCATGAAGG----AAA------AGCAGA-----GCG-------------------------------------------------------------------------TGCGCCTGCGCACCGG--------TCAAT--------------------------------------------------------------------------------------------------------------------------------------------CCACAATTAGTCATCAGACAGC----------------------------------------------A-
dp5 XL_group1e:8975728-8975975 - GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATG--------------------------------------------------------------------------------------------------GCAACGCAGCAGCGGCCGCTGCGTCGGCCGGCGTC-ACCAGCTGGTCACAGGTGAG-----------------------------------------------------------A----------AACGGTGGGAAAGGGAAGGCA----------GGGCAGACCTTGCGAAAGGAAACGAA-GAGAGC----------------------GAGCGAACGAGTGATTGAAAGAGAGCGCCGAC-------------------------------------------------------------------------TGCGCTGGCGCGCCGG--------TCAAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGGTGCAATTAGTCATCCGACTGCCGCTGCCCGTCCACTTTTGCTTTT------------------------
droPer2 scaffold_22:1232261-1232502 + GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATG--------------------------------------------------------------------------------------------------GCAACGCAGCAGCGGCCGCTGCGTCGGCCGGCGTC-ACCAGCTGGTCACAGGTGAG-----------------------------------------------------------A----------AACGGTGGGAAAGGGAA--CA----------GGGAAGACCTTGCGAAAGGAAACGAA-GAGAGC----------------------GAGCG----AGTGATTGAAAGAGAGCGCCGAC-------------------------------------------------------------------------TGCGCTGGCGCGCCGG--------TCAAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGGTGCAATTAGTCATCCGACTGCCGCTGCCCGTCCACTTTTGCTTTT------------------------
droAna3 scaffold_13088:432805-432954 - TTCCT---TGTCG--------------------------------CCCACTCTGCTG------CAGGATGTGA-------------------GCCTCA---GTGCCGCATCGCCACTCAACACCACCCTTTACAATGGGAACAGCAGCAATGCCAGTGTGGGTGGAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------CTGGG-----------------------------------------------------GGCTCTG--------TGGCTGG----------------------------------------------------------------G-GATAGTGGCCTGGG-------------------------------------------------C--------------------------------------------------------------------------------------GGGGG-
droBip1 scf7180000396359:441644-441800 - CCACCAG-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCGCTCTCGCCCATCG-CC--------------AGC---TCCAGCTCCAGTGGGACGAGCAGCA---------------------------------------------------------------------------------------------------------------------------------------GCAG------CAGTAGCAGCAGCAGC------------------------------------GGC-------------------------------------------------------AGTGTGAGCGGCAG------------------CGGAG---------TAGGTGTGG-CCACCAGCACTCTCAGCCTCTCGCCGGCGACGGCCAGCGGGGAT--------------------------------------------------------------------------------------GCCAG-
droKik1 scf7180000302264:376803-376937 + GATGAATGTATGA--------------------------------CCCGC-GCTTGA------ATAGTCGCTGCCA------------------------------------------------------------------------------------------------------------------------------------GCGGC-GGTCATCGTCGAGCGCCG-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------AGTGTCAACGCGTCGAGTTGTCAGCGACTTCAGTGCATTTGGGTGGAG---G---------------------------CGG---------AATGGGCG-----------------------------------------GGGGACT--------------------------------------------------------------------------------------GGGTAG
droFic1 scf7180000454077:1024929-1025048 - GCCATTC-TATCT--------------------------------G-CAT-CCACCTGCTTTGGCAGTCGGTGCTG------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCCGGA------TTGGGATTGGGCATGGGAATGGGAATGGGCATGGGAATGGGAATG------------------------------------------------------------------------------------------GG---------TATGGGAA-----------------------------------------TGGGAAT--------------------------------------------------------------------------------------GGGAAT
droEle1 scf7180000486474:698733-698771 - TGGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGG------CAGGGGCAACGGC-------------------------------------------------------------------------------------------------AACGGCAATGGTAA------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------GG-
droRho1 scf7180000779985:424040-424097 - GCCACTT-TATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCCTCGTCGGCGG----------------------------------CACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-
droBia1 scf7180000301468:643565-643640 - GCCGTGG---------------------------------------------------------GGAATGGCAGCG----------------C------------------------------------------------------------------AGGTGGCGGTGGCGTGGGCAGCGGTGGTGGTGGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG---------TCTGGGCA-----------------------------------------TTGGAGT-----------------------------------------------------------------------------------------GG-
droTak1 scf7180000415704:189148-189224 + AGCGAGG---------------------------------------------------------AGGATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGG------CAGTGGCAGCGGCGGA------------------------------------GGAGGTGGCATCG--------CAACTAAACACCAGCCAACTTG----------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------CGC-----------------------GA-
droEug1 scf7180000409509:572607-572711 + GCCACTT-CATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCGG---CGGCAG----------------------------------CATCTGCATCGGCGGCAG------------------------------CAGGAA----CGATGTCGTCCAACTGGCCACAGGTGAG-----------------------------------------------------------T----------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-
dm3 chr3L:9702297-9702404 + AACACTT-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGCGGCGCTGCTGGCGGAGAAGGCTG-------------------------------------------------------------------------------CCCAAGCGGCGGCGGCGGCTGCAGCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAGCAA------------------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------GC-
droSim2 3l:8651193-8651245 - GGGCT-A-TATCG--------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAAGGAG-----------------------------------------------------------G----------A---------------------------------------------------------------------------------------------------------------------GGGG------TAGGGGCAGGGGC-------------------------------------------------------------------------------------------------AGAGGCAGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:2255495-2255625 + GCCACGT-TTTAGCAATGGTAACCCCAAGGCCGTTTACAGCCTGGCCCAC-GAGT----CAGCGGGAGCGGGGCCAGGAACGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG------GAGCGGGAGC------------------------------------------GGG-------------------------------------------------------AGCGGGAGCGGCAG------------------CGGGT---------CC--CA-TTCACG----------------------------------------T--------------------------------------------------------------------------------------GGTCA-
droYak3 X:15772805-15772926 + GCCATTC-TACTT--------------------------------G-CAT-CCACCGGCCAT------AGCGG--------------------------------------------------------------------------------------------------GCGGCGGAGCAG-------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCGGGA------ATGGGCTTGGGCATGGGCATGAACATGGGCATGGGCATGGGCAT------------------------------------------------------------------------------------------GGG---------CATGAGCA-----------------------------------------TGGGAAT--------------------------------------------------------------------------------------GGGCA-
droEre2 scaffold_4690:16966033-16966153 - GCCACTT-CATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCGGGATCGGCAA----------------------------------CAGCAGCAACGGCGGCAT------------------------------------CG----GTATCGGCCAACTGGCCACAGGTGAG-----------------------------------------------------------T----------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------GATGATGG-----------------------------------------TTATAGT--------------------------------------------------------------------------------------GGGTA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCCG------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGCCACAGGTAAGCGTCG-CA--------------AGGCAATCCAGCTGGGCTGTGATGGGTAGGGGTGGGG---------------------------------------------------------------------------------------------------------------------------------ATAG------CAGGGGGCAGGGC-------------------------------------------------------------------------------------------------AGTGGCAGTGGCAG------------------TGGGC---------TGGGCATGG-GCATGGTCAA-CTCAGTCAGTTGAGAGCGAGAGCCTG---GTGTGCCAGAGTCTGCCTGCATCCATCTTCAATTAGTCATCA-ATTG----TGCCTTGCGACTTTTGCTTTT-------------------CGCG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droVir3
GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCCG------------------------------------------------------------------------------------------------------------------------------------CCAGCTGGCCTCAGGTAAGCGTCA-CAGCCTGACGATCTCA-------------------------------------GGGCGATCTCTCAAGCTTGGAGAGCGTG--CAAGTTCGCATAG--------------------------------TGGAGAGAGCATGGCAGAGAGCGAGAG----AGT------AAGAGA----------------------------------------------------------------------GCCAAGAGCAATGCGCATGCGCGCCAG--------GCCAGCAG----------------------------------------------------------------C------------------------------CGAGCATAGCCTA---GT------------GCCTG----CATCTCCAATTAGTCATCGGATTGC------CTTGCCACTTTTGCTTTTTTTTTTCATATTTTTTTTTGGCG-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
GGTCTAC-TCACC------------------------------------T-CGAGTGGTT----------TGG--------------------------------------------------------------------------------------------------GTGGCTCAGGTGGTGCCGTCAACGCGACGAGCAAC-ACGAACTCGGGGCTATTGGG-----------------------------------------------------------C----------G---------------------------------------------------------------------------------------------------------------------GCGG------TGGCGGCAGTGGC-------------------------------------------------------------------------------------------------AGCACGGGTGGCGGCGGCGGTTCGAGTAGCAGTGGCA---------TGGGCAACATGAG----------------------------------------C--------------------------------------------------------------------------------------AGCTC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTCATTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCAG----------------CCGCTG---CTGCCG----------------------------------CAGTCGCTGT---------------------TAATGCTGCTGCTG-------------------CTGCTGCTTGGACACAGGTGAGTGTATATA-------------A-------------------------------------A----------AGAGGTGGGGAAAGGAG--GG----------GGGCAGCAGTAGGGGGAGGAGGTGAAAGGGAGTTGAAGAGAGGATGGCATGGCATGAAGG----AAA------AGCAGA-----GCG-------------------------------------------------------------------------TGCGCCTGCGCACCGG--------TCAAT--------------------------------------------------------------------------------------------------------------------------------------------CCACAATTAGTCATCAGACAGC----------------------------------------------A-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................GGGAGTTGAAGAGAGGATGGC...............................................................................................................................................................................................................................................................................................................................................................2111.00100100
....TTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.........ATTG--------------------------------CCTAT-CCACCG------GAAGATGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........TATTG--------------------------------CCTAT-CCACCG------GAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........ATTG--------------------------------CCTAT-CCACCG------GAAGATGATGCAG----------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
dp5
GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATG--------------------------------------------------------------------------------------------------GCAACGCAGCAGCGGCCGCTGCGTCGGCCGGCGTC-ACCAGCTGGTCACAGGTGAG-----------------------------------------------------------A----------AACGGTGGGAAAGGGAAGGCA----------GGGCAGACCTTGCGAAAGGAAACGAA-GAGAGC----------------------GAGCGAACGAGTGATTGAAAGAGAGCGCCGAC-------------------------------------------------------------------------TGCGCTGGCGCGCCGG--------TCAAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGGTGCAATTAGTCATCCGACTGCCGCTGCCCGTCCACTTTTGCTTTT------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................AGCAGCGGCCGCTGCGTCGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................CTAT-CCACCG------GAAGATGATG--------------------------------------------------------------------------------------------------GCAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
.....................................................................GATG--------------------------------------------------------------------------------------------------GCAACGCAGCAGCGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
GTCACTT-TATTG--------------------------------CCTAT-CCACCG------GAAGATGATG--------------------------------------------------------------------------------------------------GCAACGCAGCAGCGGCCGCTGCGTCGGCCGGCGTC-ACCAGCTGGTCACAGGTGAG-----------------------------------------------------------A----------AACGGTGGGAAAGGGAA--CA----------GGGAAGACCTTGCGAAAGGAAACGAA-GAGAGC----------------------GAGCG----AGTGATTGAAAGAGAGCGCCGAC-------------------------------------------------------------------------TGCGCTGGCGCGCCGG--------TCAAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGGTGCAATTAGTCATCCGACTGCCGCTGCCCGTCCACTTTTGCTTTT------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................GGCGTC-ACCAGCTGGTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGGTGCAATTAGTC..........................................................2311.001010000
droAna3
TTCCT---TGTCG--------------------------------CCCACTCTGCTG------CAGGATGTGA-------------------GCCTCA---GTGCCGCATCGCCACTCAACACCACCCTTTACAATGGGAACAGCAGCAATGCCAGTGTGGGTGGAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------CTGGG-----------------------------------------------------GGCTCTG--------TGGCTGG----------------------------------------------------------------G-GATAGTGGCCTGGG-------------------------------------------------C--------------------------------------------------------------------------------------GGGGG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................CACTCTGCTG------CAGGATGTGA-------------------GCCTCA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................G------CAGGATGTGA-------------------GCCTCA---GTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................GGGAACAGCAGCAATGCCAGTGTGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
........................................................................................................................................GGGAACAGCAGCAATGCCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGG----------------------------------------------------------------G-GATAGTGGCCTGGG-------------------------------------------------C--------------------------------------------------------------------------------------GGGGG-2611.001000001
..............................................................................................................................................AGCAGCAATGCCAGTGTGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
......................................................................................................................................ATGGGAACAGCAGCAATGCCAGTGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
...................................................................................................................................................................GGAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------CTGGG-----------------------------------------------------GGCTCT..............................................................................................................................................................................................................................................2111.001100000
TTCCT---TGTCG--------------------------------CCCACTCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................ACAGCAGCAATGCCAGTGTGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TGGCTGG----------------------------------------------------------------G-GATAGTGGC...................................................................................................................................................1811.001010000
...................................................................................................................................................................GGAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------CTGGG-----------------------------------------------------GGC.................................................................................................................................................................................................................................................1820.501010000
droBip1
CCACCAG-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCGCTCTCGCCCATCG-CC--------------AGC---TCCAGCTCCAGTGGGACGAGCAGCA---------------------------------------------------------------------------------------------------------------------------------------GCAG------CAGTAGCAGCAGCAGC------------------------------------GGC-------------------------------------------------------AGTGTGAGCGGCAG------------------CGGAG---------TAGGTGTGG-CCACCAGCACTCTCAGCCTCTCGCCGGCGACGGCCAGCGGGGAT--------------------------------------------------------------------------------------GCCAG-SizeHit CountTotal NormTotal
No Reads
droKik1
GATGAATGTATGA--------------------------------CCCGC-GCTTGA------ATAGTCGCTGCCA------------------------------------------------------------------------------------------------------------------------------------GCGGC-GGTCATCGTCGAGCGCCG-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------AGTGTCAACGCGTCGAGTTGTCAGCGACTTCAGTGCATTTGGGTGGAG---G---------------------------CGG---------AATGGGCG-----------------------------------------GGGGACT--------------------------------------------------------------------------------------GGGTAGSizeHit CountTotal NormTotal
No Reads
droFic1
GCCATTC-TATCT--------------------------------G-CAT-CCACCTGCTTTGGCAGTCGGTGCTG------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCCGGA------TTGGGATTGGGCATGGGAATGGGAATGGGCATGGGAATGGGAATG------------------------------------------------------------------------------------------GG---------TATGGGAA-----------------------------------------TGGGAAT--------------------------------------------------------------------------------------GGGAATSizeHit CountTotal NormTotal
No Reads
droEle1
TGGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGG------CAGGGGCAACGGC-------------------------------------------------------------------------------------------------AACGGCAATGGTAA------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------GG-SizeHit CountTotal NormTotal
No Reads
droRho1
GCCACTT-TATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCCTCGTCGGCGG----------------------------------CACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGTGG---------------------------------------------------------GGAATGGCAGCG----------------C------------------------------------------------------------------AGGTGGCGGTGGCGTGGGCAGCGGTGGTGGTGGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG---------TCTGGGCA-----------------------------------------TTGGAGT-----------------------------------------------------------------------------------------GG-SizeHit CountTotal NormTotal
No Reads
droTak1
AGCGAGG---------------------------------------------------------AGGATGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGG------CAGTGGCAGCGGCGGA------------------------------------GGAGGTGGCATCG--------CAACTAAACACCAGCCAACTTG----------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------CGC-----------------------GA-SizeHit CountTotal NormTotal
No Reads
droEug1
GCCACTT-CATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCGG---CGGCAG----------------------------------CATCTGCATCGGCGGCAG------------------------------CAGGAA----CGATGTCGTCCAACTGGCCACAGGTGAG-----------------------------------------------------------T----------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-SizeHit CountTotal NormTotal
No Reads
dm3
AACACTT-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGCGGCGCTGCTGGCGGAGAAGGCTG-------------------------------------------------------------------------------CCCAAGCGGCGGCGGCGGCTGCAGCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAGCAA------------------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------GC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................CTAC-ATGC----AACAGAAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010000000010000000
...........................................................................................................................................................................................................................CAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAGCAA------------------T...............................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............C--------------------------------CCTAC-ATGC----AACAGAAGGCGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......T-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000100000
...............................................TAC-ATGC----AACAGAAGGCGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.............................................CCTAC-ATGC----AACAGAAGGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........TC--------------------------------CCTAC-ATGC----AACAGAAGGCGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACACTT-CAATC--------------------------------CCTAC-ATGC----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TT-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCTGGCGGAGAAGGCTG-------------------------------------------------------------------------------CCCAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAGCAA------------------TA..............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
............C--------------------------------CCTAC-ATGC----AACAGAAGGCGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................TGGCGGAGAAGGCTG-------------------------------------------------------------------------------CCCAAGCGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........AATC--------------------------------CCTAC-ATGC----AACAGAAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................CAGAAGGCGGCGCTGCTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TGCAGCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGG........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................TGC----AACAGAAGGCGGCGCTGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............C--------------------------------CCTAC-ATGC----AACAGAAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................GGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGT.......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAGCA...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................ATGC----AACAGAAGGCGGCGCTGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................GGCGGCGCTGCTGGCGGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................CCTAC-ATGC----AACAGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AACAGAAGGCGGCGCTGCTGGCGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........TC--------------------------------CCTAC-ATGC----AACAGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GGCTGCAGCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG.........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................TG-------------------------------------------------------------------------------CCCAAGCGGCGGCGGCGGCTGCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAG.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................CGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTA......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACTT-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTA......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....TT-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................C----AACAGAAGGCGGCGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................TGCTGGCGGAGAAGGCTG-------------------------------------------------------------------------------CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGC----AACAGAAGGCGGCGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACTT-CAATC--------------------------------CCTAC-ATGC----AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................TAC-ATGC----AACAGAAGGCGGCGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......T-CAATC--------------------------------CCTAC-ATGC----AACAGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................C-ATGC----AACAGAAGGCGGCGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................C----AACAGAAGGCGGCGCTGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................C-ATGC----AACAGAAGGCGGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................C----AACAGAAGGCGGCGCTGCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GGCGGCTGCAGCGGT-------------------CCAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GCAGCGGT-------------------CCAGAGCAG-----------------------------------------------------------T----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTA......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................GC----AACAGAAGGCGGCGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................AAGGCGGCGCTGCTGGCGGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAC-ATGC----AACAGAAGGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
GGGCT-A-TATCG--------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAAGGAG-----------------------------------------------------------G----------A---------------------------------------------------------------------------------------------------------------------GGGG------TAGGGGCAGGGGC-------------------------------------------------------------------------------------------------AGAGGCAGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCCACGT-TTTAGCAATGGTAACCCCAAGGCCGTTTACAGCCTGGCCCAC-GAGT----CAGCGGGAGCGGGGCCAGGAACGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG------GAGCGGGAGC------------------------------------------GGG-------------------------------------------------------AGCGGGAGCGGCAG------------------CGGGT---------CC--CA-TTCACG----------------------------------------T--------------------------------------------------------------------------------------GGTCA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCCATTC-TACTT--------------------------------G-CAT-CCACCGGCCAT------AGCGG--------------------------------------------------------------------------------------------------GCGGCGGAGCAG-------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCGGGA------ATGGGCTTGGGCATGGGCATGAACATGGGCATGGGCATGGGCAT------------------------------------------------------------------------------------------GGG---------CATGAGCA-----------------------------------------TGGGAAT--------------------------------------------------------------------------------------GGGCA-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCCACTT-CATCG--------------------------------CCTAT-CCGCCG------GAAGATGACCAGG----------------CATCGGGATCGGCAA----------------------------------CAGCAGCAACGGCGGCAT------------------------------------CG----GTATCGGCCAACTGGCCACAGGTGAG-----------------------------------------------------------T----------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------GATGATGG-----------------------------------------TTATAGT--------------------------------------------------------------------------------------GGGTA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................T------------------------------------CG----GTATCGGCCAACTGGCCACAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000003
................................................AT-CCGCCG------GAAGATGACCAGG----------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000110
..........................................................................................................................................................GGCAT------------------------------------CG----GTATCGGCCAACTGGCCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...................................................................ATGACCAGG----------------CATCGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
................................................AT-CCGCCG------GAAGATGACCAGG----------------CATCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.............................................................................................ATCGGGATCGGCAA----------------------------------CAGCAGCAACGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
................................................AT-CCGCCG------GAAGATGACCAGG----------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........................................................................................................................................................GGCAT------------------------------------CG----GTATCGGCCAACTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........................................................................................................CAA----------------------------------CAGCAGCAACGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100

Generated: 05/17/2015 at 10:48 PM