ID:

dmo_661

 Coordinate:

scaffold_6473:3350426-3350503 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_16189:3]; CDS [Dmoj\GI15450-cds]; exon [dmoj_GLEANR_16189:4]; CDS [Dmoj\GI15450-cds]; intron [Dmoj\GI15450-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
ACGATATACCGACCAGCACAGCAGCAGCAGGAGCAGCAGCGGCGACAGCGGCAACAACAACCACTGGATCATCAGCAGCAATAATAACAACAACAACCGCATCGGGCGCCATATCATCTAGCCAAAAGATGACAAACATTTGCTACTTCAAGCCCATAACGCCGCCACTGCAGCTGCG
**************************************************.............((((((.....((.((.................(((...)))))))......)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V049
head
 V056
head
 M046
female body
 M060
embryo
..............AGCACAGCAGCAGCAGGAGCAGCAGC.......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
....................................................AACAACAACCACAGGATCA........................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
...............GCACCGCAGCAGCAGGAGCAGCAGC.......................................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0
..............................GAACACCAGCGGCGACGGCGGC.............................................................................................................................. 22 3 17 0.06 1 0 0 1 0 0
..................CAGCAGCAGCAGGAGCAG.............................................................................................................................................. 18 0 20 0.05 1 0 0 0 1 0
.................ACAGCAGCAGCAGGAGCAGC............................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
..........................CGAGGAGCAGTAGCGGCGAC.................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TGCTATATGGCTGGTCGTGTCGTCGTCGTCCTCGTCGTCGCCGCTGTCGCCGTTGTTGTTGGTGACCTAGTAGTCGTCGTTATTATTGTTGTTGTTGGCGTAGCCCGCGGTATAGTAGATCGGTTTTCTACTGTTTGTAAACGATGAAGTTCGGGTATTGCGGCGGTGACGTCGACGC
**************************************************.............((((((.....((.((.................(((...)))))))......)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M046
female body
.....................................................................................................................................................TTCGGGTATTGCGGCCGGGAC........ 21 2 1 1.00 1 1 0
..................................................................................................CGTGGCCGGCGGTATAGT.............................................................. 18 2 4 0.25 1 0 1
.....TGGGGCTGGTTGTGTCGTC.......................................................................................................................................................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:3350376-3350553 + dmo_661 ACGATA---------TACCGACCA----------------GCACAGCA----------GCAG---C------AGGAGCAGC--AGCG---GCGA-------CAGC---G--GC------------AACAACAA---CCACTGGATCATC------------A-----------------GCAGCAAT------------------AAT------------------------------------AACAAC---A---A------------------CAACCGCATCGGGCGCC---------------AT-----------ATCATCTA---GCCAAAAGAT-----G-A----CA------AACAT---TTGC-------TAC--TTC-----------------------------------------------AAGCCCATAACGCCGCC------------------------ACTGCAGCTGCG-------------
droVir3 scaffold_12970:2622690-2622852 + ACGATA---------CACCGACAA----------------GCACAGCA---------------------------------GCAACA-------------GT-----------TGCTGCTGCAGCAGCAACAA---CAACAGCAACAGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CAACAACGTCTGGAGCA---------------AC-----------AACATCGG---GCCAAAAGCT-----G-G----CC------AATAT---TTGT-------TAT--TTT-----------------------------------------------AAGCCCATAACGCCGCC------------------------CTTGCAGCTGCG-------------
droGri2 scaffold_15081:1158435-1158588 - ACGAGA---------TGCCACCAA----------------GCACAGCA----------TCTGGAGC---------AGGA-----A---------------------------------------------CAG---CATCTGGATCAGC------GCCAGCA-----------------A---CTGCA---ACAGCGAC---------------------------------------------------------------------------------GGCAACTGGCGCT---------------GC-----------AACATCCA---AGCAAATGGT-----G-G----GC------AACAC---TTGT-------TAC--TTT-----------------------------------------------AAGCCGATAACGCCGCC------------------------ATTGCAGCTCCG-------------
droWil2 scf2_1100000004909:8722866-8723030 + ACAGCAGA------------------TGCAA------CAGCAACAACA----------GCAG---C------AGCAGCAGC--AGAT---------------------------------------GCAACAA------CAGCAACAGC------------A-----------------GCAGATGCAACAACAGCAAC---AGCAGCAGCA---ACAACAGC---------------------------AGATGCAAG---------------------------------AGCAGCA---A-----------------------GA---A----------C-GCCAA--C-AGC------AA---------CATCAGCT----G--------CAACATC---------------------------------------------AGCTGCA------------------------ACATCAGCTGCA-------------
dp5 2:12229042-12229197 + AGCA----------------GCAA----------------ATGCAGCA---------------------------------GCAACA-------------GC-----------AGC---------AGCAACAACAGCAGCAACAACAGCAGCAGC------A-----------------G------CA---GCAACAGC------------------AGC---AGCAACAG------------CAACAAC---AGCAGCAG---------------------------------------------------CGCACC----------C---AGCAAACGCA-----G-A-CGAGC------AG---------CTTC--------------------CAGC---------------------------------------------AGCAACAACAGCAGC----------------CCTTGAGCGCCA-------------
droPer2 scaffold_13:85488-85662 + ACACTA---------CAACTACAA----------------CTACAGCA----------CCAC---C------ATCAGCATC-----A------------G-CATCACCACAGC------CACAGCCACAA--C---CATCTCCATAATC------------A-----------------GCATCAGCA---ACAACAACAACT---CC---------AT---------CATCAACAACAACAACAACAAC---A----------------------------------------------------------------------------------------------A--C-AAC------AT---------CACCAACA----A--------CCCCAAC---------------------------------------------AACAACATCATCAGC-----------T----AC-TAAACTGTA-------------
droAna3 scaffold_12929:1884824-1884985 + ACCACAAC------------------AG----------------ACCACACACCTGCAGCAGCAGC---------A-----GCAACA-------------GC-----------AACAGCAACAGCAGCAGCAT---CCGCAGCATCATC------------T-----------------GCAGCAGCA---ACAGCAACAGCA---CC---------AC---------CACCAGC---------------------------------------------------------AACAA-----------------------------CA---A----------C-ACCAT--G-CCC------AG---------CAGCAGCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCAACA-------------
droBip1 scf7180000396580:1193499-1193653 - TATACT---------CAA----------------------------CA-------GCAGCAGCAGC---------A-----GGTC----------------C------A--GC------------AACAACAA---CAGCAGCAGCAAA------TCCG--------------CTTTCA------------ACAG---------------C------------AACAA---------------CAACAAC---A------------------------------ACA---------------GCAGCAAA-----------T--GTCTC---C-----------G-CAGGCCGT--GGCC--A--TCCGGCAGCAAATGCA----A--------CGCCAAC---------------------------------------------AACAGCA------------------------GCAGCAGCTGCG-------------
droKik1 scf7180000302401:199563-199745 + ACAGCAGC------------------AACAA------GAGCCACAGGA----------GCCT---C------AGCAGCAGC-----AGGAGCCA-------CAGG---A--GC------------CACAGGAG---CCACAGGAGCAAC------AGCAGCA-----------------A------CA---GCAG---------------C------------AACAGCAG------------CAA---CAGGAGC------------------------------------A---------------AC-----------AGGAGTCAAAG----------GAG-CAA--C-AGGAGCCACAGAAGCAACAGCAGA----ACC--------AGGAGCAAC---------------------------------------------AGCAGCC------------------------AGAGCAGCAGCC-------------
droFic1 scf7180000453052:4818-5012 + GCGACATC------------------AG------------------CA----------TCAGCAGC---------A-----GCAACA-------------GC-----------AGCAGCAGCAGCAGCAACAC---CAGCAGCAACATC------------A-----------------GCAGCAGTA---CCAGCAGCAACA---CT---------AT---------CAGCAACAT------TATCAGC---A-------------------------------------------------------------------------------------------------------------GCAGCAGCACTTGT----ACC--------AGCATCATCCCAGCCTGGCGCTGGCCAACCTGCCACCCGCTGTCGAGGTGGCGGAGTTGCA------------------------ACTGCAGCAGCA-------------
droEle1 scf7180000491087:122480-122656 + GCAACA---------CCTCAGCCACCAGCA----------------------------ACAGCAGC---------A-----GCAGCA-------------GC-----------AGCACCAGCAGCAGCAACAA---CTGCAGCAACAGC------------A-----------------GCAGCAGCA---ACAGCAGCAGCA---GCAGCATGCCCAGCAGC---------------------------ATGCCCAGC---------------------------------AACTG--------------------------CAACAT---GCC-----------CAA--C-AGC------AG---------CTGCAGCA----G--------CAGCAAC---------------------------------------------AACAGCA------------------------GCAGCAGCAGCA-------------
droRho1 scf7180000779558:40966-41134 - ACAG-A---------CAACAA-------------------------CA----------ACAGCAGCAGCAGCAACAACAGC-----A------------G-CAG--------------------CAGCAACAG------CAGCA------------------GCAGCAACAGACGCCCAGCA---------GCAG---------------CA---ACAA---------C------------AGCA------------A------------------------------------------CA-CAG--------CGCCCGCTCCCTCGC---CCCAAAAGGAC-T---------AC------AGCAT---------------------------------------------------------------------------CCCGCTCCACG--------TCGACTGCAGCGTGGAGTACGAGCTGCC-------------
droBia1 scf7180000302126:1418010-1418183 - GCACTT---------TGCCAACCA----------------TCACAGCGCCCAGCAGCAACAGACGC---------A-----GCAG----------------CAGC--------AGCAACAGGAGCAACAGAATCCCCAGCAGCA-----------------------------------------------ACAGCAGC---AGCAGCAGGC---GCAACAGC---------------------------AGATACTCC---------------------------------CGCAGCA---A-----------------------CA---T----------C-TGCAG--C-ACC------TG---------CACAAGCA----T--------CCGCAGC---------------------------------------------AGCTCCA------------------------CCAGCAGCAGCT-------------
droTak1 scf7180000413048:5916-6067 - CAA-CA---------CAAAGTCCA---------------------GCA-------ACAACAACAGC---------A-----GCCAAA-------------CC-----------AACAACAACAGCAGCAAAAC---CCACAACAACAGC------------A-----------------GCCATACCA---ACAACAACAACA---GC---------------------------------AGCC------------A---------TACCAACAACAACA-------------------------------------------------------------------------GC------AT---------GTGC----AGCAA--------CAACAAC---------------------------------------------AGCAGCA------------------------AGTGCAGCAACA-------------
droEug1 scf7180000409110:1022021-1022198 - GTGCTC---------CGCCGCCCACAAACAA---CAACAACAA---CA----------ACACCAGC---------AGC-----AGCA---GCAGCAGTAA-CAG--------------------CAACAACAC---TAGCAGCAGCAAC--------------------------------------------AACAAT------AGT------------------------------------AACAAC---A---A------------------CAGCAGCAGCAGCAACAACAA--------------------------CAACAC---ACCAAACGGT-----G-C----AC------AGCAG---CAGC------A----A--------CATCAGC---------------------------------------------AGCAGCA------------------------GCAGCAGCAGCA-------------
dm3 chrX:9164866-9165042 - ACAACAGC------------------AACAG------CAACAACAGCA----------GCAG---C------AACAACAAC-----A------------G-CAG-----------------------CAACAA---CAGCAGCA------------------GCTGCAACAA-C-CACAGCA---------GCAG---------------CA---ACAACA---------G------------CA------GCAGCAAC---------------------------------AACAGCA---GGAGCAAC-----------AGCA------A----------CTG-CAAT-TGA--AGCCACATCATCTGCAGC-------AAC--TT------CAACTTC---------------------------------------------AACTGTT------------------------GCAGCAGCAGCA-------------
droSim2 x:3498497-3498673 - dsi_16930 GCATCAGC------------------CGCAC------CAGTCGCATCA----------GCAGCATC---------AGCA-----GCA-------------GCAACATCA-----------GC---AGCAACAACATCAGCAGCAACATCAGCAGC------A-----------------G------CA---GCAGCTGC------------------AACA---GCAACAT------------CAGCAAC---ATCAGCAGCTGCAGCATCAGCAGCAGCA-------------------------------------------------------------------------AC------AT---------CAGC----AGCAA--------CAACATC---------------------------------------------AGCAGCA------------------------ACATCAGCTGCA-------------
droSec2 scaffold_21:379203-379383 - GTGCTC---------CGCCGCCCACAAACAA------------CAACA----------GCAGCAGC---------AGC-----AGCA-------------GCAGCAACA--GC------------AACAACAACACTAGCAACAATAAC-----------------------------------------------AAC---AATAGCAGC------------------------------------AAC---A---G------------------CGGCAGCAACAGCAGCAACAA--------------------------CAACAC---ACCAAACGGT-----G-C----GC------AGCAG---CAGC-------AGC--AACAACAACACCATC---------------------------------------------AGCAGCA------------------------GCAGCAGCAGCA-------------
droYak3 3L:8358752-8358923 - GCAGCAACACAGTCA---------GCAGCAAAGTCAG---CAGCAGCA----------ACAGCAGCAGC------A-----GCAACA-------------AC------A--GC------------AACAGCAG---CAGCAG-----------------------------------------CAGCA---ACAGCAAC---AGCAGCAGC------------------AGCAAC---------AA------------------------------------------------CAGCAACAGCAG----------------------------------------CAA--C-AGC------AG---------CAACAGCA----G--------CAACAAC---------------------------------------------AACAGCA------------------------GCAACAGCAGCAGTTACAGCTGCAG
droEre2 scaffold_4929:2576054-2576224 + ATGGA----------TGCCAACTA---A------------CAACAGCA----------GCAGCAGC---------AGCAGC-----A-------------GCAG-----------------------CAACAA---TGGCAACA------------------ACTTTGACAA-CTTGCAACT---------ACAG---------------C------------GACAACGA------------CAA---CGAAAAC------------------------------------A---A------------CAAGGCGCAAT-GT---TA---A----------C-GCCA-G-CGTGC------ATTGT---TAGC-------AGA--TTC-----------------------------------------------AAGTGTCTGGCGCTGCG------------------------GCAGCAGAGGCG-------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACGATA---------TACCGACCA----------------GCACAGCA----------GCAG---C------AGGAGCAGC--AGCG---GCGA-------CAGC---G--GC------------AACAACAA---CCACTGGATCATC------------A-----------------GCAGCAAT------------------AAT------------------------------------AACAAC---A---A------------------CAACCGCATCGGGCGCC---------------AT-----------ATCATCTA---GCCAAAAGAT-----G-A----CA------AACAT---TTGC-------TAC--TTC-----------------------------------------------AAGCCCATAACGCCGCC------------------------ACTGCAGCTGCG-------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................A----------------GCACAGCA----------GCAG---C------AGGAGCAGC--AGC................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...........................................CAGCA----------GCAG---C------AGGAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
..........................................ACAGCA----------GCAG---C------AGGAGCAGC--...................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droVir3
ACGATA---------CACCGACAA----------------GCACAGCA---------------------------------GCAACA-------------GT-----------TGCTGCTGCAGCAGCAACAA---CAACAGCAACAGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CAACAACGTCTGGAGCA---------------AC-----------AACATCGG---GCCAAAAGCT-----G-G----CC------AATAT---TTGT-------TAT--TTT-----------------------------------------------AAGCCCATAACGCCGCC------------------------CTTGCAGCTGCG-------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................AA----------------GCACAGCA---------------------------------GCAACA-------------GT-----------T....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAACGCCGCC------------------------CTTGCAGCTGCG-------------2511.001000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CATCGG---GCCAAAAGCT-----G-G----CC------AATAT---TTGT-------.........................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................TCGG---GCCAAAAGCT-----G-G----CC------AAT.........................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C-----------AACATCGG---GCCAAAAGCT-----...........................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................A---------------AC-----------AACATCGG---GCCAAAAGCT-----G-G----....................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................CACAGCA---------------------------------GCAACA-------------GT-----------TGCTGCT..............................................................................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCTGCAGCAGCAACAA---CAACAGC.......................................................................................................................................................................................................................................................................................................................................................................2360.171000100000000000000000000000000000000000000000000000000000000000
........................................GCACAGCA---------------------------------GCAACA-------------GT-----------TGC..................................................................................................................................................................................................................................................................................................................................................................................................1980.131001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGCAACAA---CAACAGCAACAGC------------A-----------------GCAGCA.............................................................................................................................................................................................................................................................................................................................2880.131000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................CAACAA---CAACAGCAACAGC------------A-----------------GC.................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000000020000000000000000000000000000000
..................................................................................................................................................AGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CA................................................................................................................................................................................................................................19200.102000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................................................AACAGC------------A-----------------GCAGCAGCA---ACA....................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAA---CAACAGCAACAGC------------A-----------------GC.................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000001000000000000000000000010000000
.............................................................................................................................................GCAACAGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------..................................................................................................................................................................................................................................22200.102001000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................CAGCAACAGC------------A-----------------GCAGCAGCA---AC.....................................................................................................................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AGCAGCAACAA---CAACAGCA......................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................GCAGCAACAA---CAACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................ACAA---CAACAGCAACAGC------------A-----------------GCAGC..............................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAACAGC------------A-----------------GCAGCAGCA---A......................................................................................................................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAACAGC------------A-----------------GCAGCAGC...........................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................A---CAACAGCAACAGC------------A-----------------GCAGCAGC...........................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................GCAGCAACAA---CAACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAACAGC------------A-----------------GCAGCA.............................................................................................................................................................................................................................................................................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................CAGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CAACAAC...........................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................AGCAGCAACAA---CAACAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................A---CAACAGCAACAGC------------A-----------------GCAGCA.............................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................ACAGC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CA................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................AGCAGCAACAA---CAACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ACAA---CAACAGCAACAGC------------A-----------------GCAG...............................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AACAA---CAACAGCAACAGC------------A-----------------GCA................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GC------------A-----------------GCAGCAGCA---ACAA---------------------------------------------------------------------------------CAACAAC...........................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................CAA---CAACAGCAACAGC------------A-----------------GCAG...............................................................................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................AACAGCAACAGC------------A-----------------GCAGC..............................................................................................................................................................................................................................................................................................................................18200.051000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................AA---CAACAGCAACAGC------------A-----------------GCAGCA.............................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................AA---CAACAGCAACAGC------------A-----------------GCA................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
ACGAGA---------TGCCACCAA----------------GCACAGCA----------TCTGGAGC---------AGGA-----A---------------------------------------------CAG---CATCTGGATCAGC------GCCAGCA-----------------A---CTGCA---ACAGCGAC---------------------------------------------------------------------------------GGCAACTGGCGCT---------------GC-----------AACATCCA---AGCAAATGGT-----G-G----GC------AACAC---TTGT-------TAC--TTT-----------------------------------------------AAGCCGATAACGCCGCC------------------------ATTGCAGCTCCG-------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................CA---AGCAAATGGT-----G-G----GC------AACAC---TTGT-------TA.......................................................................................................................2711.00101
droWil2
ACAGCAGA------------------TGCAA------CAGCAACAACA----------GCAG---C------AGCAGCAGC--AGAT---------------------------------------GCAACAA------CAGCAACAGC------------A-----------------GCAGATGCAACAACAGCAAC---AGCAGCAGCA---ACAACAGC---------------------------AGATGCAAG---------------------------------AGCAGCA---A-----------------------GA---A----------C-GCCAA--C-AGC------AA---------CATCAGCT----G--------CAACATC---------------------------------------------AGCTGCA------------------------ACATCAGCTGCA-------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................AC---AGCAGCAGCA---ACAACAGC---------------------------............................................................................................................................................................................................................................................................20200.15300030
................................................................................................................................................ACAGC------------A-----------------GCAGATGCAACAT......................................................................................................................................................................................................................................................................................................................1970.14100010
.............................................................................................................................................................................................CAACAGCAAC---AGCAGCAGCA---ACAACAGC---------------------------............................................................................................................................................................................................................................................................2880.13100010
.....................................CAGCAACAACA----------GCAG---C------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200020
.............................AA------CAGCAACAACA----------GCAG---C------AGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................ACAGCAAC---AGCAGCAGCA---ACA............................................................................................................................................................................................................................................................................................21200.05100010
.....................................................................................................................................................................................................AC---AGCAGCAGCA---ACAACAGC---------------------------A...........................................................................................................................................................................................................................................................21200.05100010
.......................................GCAACAACA----------GCAG---C------AGCAGCAGC--...................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05110000
............................................AACA----------GCAG---C------AGCAGCAGC--AGA................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................CAACAACAGCAAC---AGCAGCAGC...................................................................................................................................................................................................................................................................................................22200.05100010
.............................AA------CAGCAACAACA----------GCAG---C------AGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.....................................CAGCAACAACA----------GCAG---C------AGCAGCAGC--A..................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
........................................CAACAACA----------GCAG---C------AGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
............................CAA------CAGCAACAACA----------GCAG---C------AGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..............................A------CAGCAACAACA----------GCAG---C------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
...........................................................................................................................................................................................AACAACAGCAAC---AGCAGCAGCA---ACA............................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................................................................................................................GCAACAACAGCAAC---AGCAGCAGC...................................................................................................................................................................................................................................................................................................23200.05100100
......................................AGCAACAACA----------GCAG---C------AGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
......................................AGCAACAACA----------GCAG---C------AGCAGCAGC--A..................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.......................................GCAACAACA----------GCAG---C------AGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................CAGCAAC---AGCAGCAGCA---AC.............................................................................................................................................................................................................................................................................................19200.05100010
dp5
AGCA----------------GCAA----------------ATGCAGCA---------------------------------GCAACA-------------GC-----------AGC---------AGCAACAACAGCAGCAACAACAGCAGCAGC------A-----------------G------CA---GCAACAGC------------------AGC---AGCAACAG------------CAACAAC---AGCAGCAG---------------------------------------------------CGCACC----------C---AGCAAACGCA-----G-A-CGAGC------AG---------CTTC--------------------CAGC---------------------------------------------AGCAACAACAGCAGC----------------CCTTGAGCGCCA-------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................GCA---------------------------------GCAACA-------------GC-----------AGC---------AGCAAC...................................................................................................................................................................................................................................................................................................................................................................................20200.1530030000000
.......................................................................................................................................GCAGCAACAACAGCAGCAGC------A-----------------...................................................................................................................................................................................................................................................................................................................................21200.1020200000000
.........................................................................................................................................AGCAACAACAGCAGCAGC------A-----------------G------CA---.......................................................................................................................................................................................................................................................................................................................22200.1020200000000
....................................................................................................................................ACAGCAGCAACAACAGCAGCAGC------A-----------------G------CA---G......................................................................................................................................................................................................................................................................................................................28100.1010000100000
..................................................................................................................GC---------AGCAACAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
...................................................................................................................................................................................G------CA---GCAACAGC------------------AGC---AGCAACAG------------CAAC...............................................................................................................................................................................................................................................................26170.0610001000000
.............................................GCA---------------------------------GCAACA-------------GC-----------AGC---------AGCAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................27170.0610100000000
........................................................................................................................................CAGCAACAACAGCAGCAGC------A-----------------G------CA---G......................................................................................................................................................................................................................................................................................................................24200.0510100000000
.................................................................................................................................ACAACAGCAGCAACAACAGC.................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..............................................................................................................................................CAACAGCAGCAGC------A-----------------G------CA---GCAACA.................................................................................................................................................................................................................................................................................................................23200.0510100000000
..........................................GCAGCA---------------------------------GCAACA-------------GC-----------AGC---------AGCA.....................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010000
...................................................................................................................C---------AGCAACAACAGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................................................................................................AGCAACAACAGCAGCAGC------A-----------------...................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..........................................................................................................................................GCAACAACAGCAGCAGC------A-----------------G------CA---GC.....................................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................................................CAACAACAGCAGCAGC------A-----------------G------CA---GCAAC..................................................................................................................................................................................................................................................................................................................25200.0510010000000
.............................................................................................................................AGCAACAACAGCAGCAACAACA...................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.............................................................................................................................................ACAACAGCAGCAGC------A-----------------G------CA---.......................................................................................................................................................................................................................................................................................................................18200.0510000100000
.....................................................................................................C-----------AGC---------AGCAACAACAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
....................................................................................................................................ACAGCAGCAACAACAGCAG...............................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................CAACAGCAGCAACAACAGC.................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.......................................................................................................................................................CAGC------A-----------------G------CA---GCAACAGC------------------AGC---A......................................................................................................................................................................................................................................................................................20200.0510000001000
..................................................................................................................................CAACAGCAGCAACAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
................................................................................................................................................................................................................................GCAACAG------------CAACAAC---AGCAGCAG---------------------------------------------------C.............................................................................................................................................................................................23200.0510000001000
...................................................................................................................................................GCAGCAGC------A-----------------G------CA---GCAACAGC------------------.............................................................................................................................................................................................................................................................................................20200.0510010000000
..........................................................................................................................................GCAACAACAGCAGCAGC------A-----------------G------CA---.......................................................................................................................................................................................................................................................................................................................21200.0510000100000
..........................................................................................................................................................................................................................GC---AGCAACAG------------CAACAAC---AGCAGCA..................................................................................................................................................................................................................................................24200.0510000100000
....................................................................................................GC-----------AGC---------AGCAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
.................................................................................................................................................................................................AACAGC------------------AGC---AGCAACAG------------CAAC...............................................................................................................................................................................................................................................................21200.0510000000010
....................................................................................................................................ACAGCAGCAACAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..............................................................................................................................................CAACAGCAGCAGC------A-----------------G------CA---GCAACAGC------------------A............................................................................................................................................................................................................................................................................................26200.0510100000000
...................................................................................................................................................................................G------CA---GCAACAGC------------------AGC---AGCAACAG------------CA.................................................................................................................................................................................................................................................................24200.0510000100000
...........................................................................................................................................CAACAACAGCAGCAGC------A-----------------G------CA---GC.....................................................................................................................................................................................................................................................................................................................22200.0510001000000
...............................................................................................................................................................................................................................AGCAACAG------------CAACAAC---AGCAGC...................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................................................CAACAGCAGCAGC------A-----------------G------CA---GCAAC..................................................................................................................................................................................................................................................................................................................22200.0510010000000
.................................................................................................................................................CAGCAGCAGC------A-----------------G------CA---GCAACAGC------------------AGC---.......................................................................................................................................................................................................................................................................................25200.0510000000001
.........................................................................................................................................AGCAACAACAGCAGCAGC------A-----------------G------CA---G......................................................................................................................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................................................................................................................GC------------------AGC---AGCAACAG------------CAACAAC---AGC......................................................................................................................................................................................................................................................23200.0510000100000
.....................................................................................CA-------------GC-----------AGC---------AGCAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................23200.0510000010000
..................................................................................................................................................AGCAGCAGC------A-----------------G------CA---GCAACAGC------------------A............................................................................................................................................................................................................................................................................................22200.0510000000001
droPer2
ACACTA---------CAACTACAA----------------CTACAGCA----------CCAC---C------ATCAGCATC-----A------------G-CATCACCACAGC------CACAGCCACAA--C---CATCTCCATAATC------------A-----------------GCATCAGCA---ACAACAACAACT---CC---------AT---------CATCAACAACAACAACAACAAC---A----------------------------------------------------------------------------------------------A--C-AAC------AT---------CACCAACA----A--------CCCCAAC---------------------------------------------AACAACATCATCAGC-----------T----AC-TAAACTGTA-------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................AC---C------ATCAGCATC-----A------------G-CATCACCACAGC------...............................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................AAC---A----------------------------------------------------------------------------------------------A--C-AAC------AT---------CACCAACA----A--------CCCCAAC---------------------------------------------........................................................2711.001010000
...CTA---------CAACTACAA----------------CTACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111001000
droAna3
ACCACAAC------------------AG----------------ACCACACACCTGCAGCAGCAGC---------A-----GCAACA-------------GC-----------AACAGCAACAGCAGCAGCAT---CCGCAGCATCATC------------T-----------------GCAGCAGCA---ACAGCAACAGCA---CC---------AC---------CACCAGC---------------------------------------------------------AACAA-----------------------------CA---A----------C-ACCAT--G-CCC------AG---------CAGCAGCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCAACA-------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................CAA-----------------------------CA---A----------C-ACCAT--G-CCC------AG---------CAGCAGCA----A--------C...........................................................................................................2811.001010000
..........................................................................................................................AGCAGCAGCAT---CCGCAGCA......................................................................................................................................................................................................................................................................................................................................................................1940.251000001
............................................................................................................................................................................................................................................................................................................................................................................................A----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCA................25200.153000003
.......................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GC.......................23200.153120000
..................................................................................................................................................ATC------------T-----------------GCAGCAGCA---ACAGC..................................................................................................................................................................................................................................................................................................................1870.141010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------AGCAGCA------------------------GCAGCAGC.................18200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGC.................23200.102020000
...............................................................AGC---------A-----GCAACA-------------GC-----------AACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...................................................................................AACA-------------GC-----------AACAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGC....................26200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------AGCAGCA------------------------GCAGCAGCAACA-------------22200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................CA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGC.................25200.051010000
............................................................AGCAGC---------A-----GCAACA-------------GC-----------AACA.................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
........................................................CAGCAGCAGC---------A-----GCAACA-------------G.................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGC....................20200.051000001
.................................................................C---------A-----GCAACA-------------GC-----------AACAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................A----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCAAC..............27200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----A--------CAGCAAC---------------------------------------------AGCA....................................................19200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------------------AGCAGCA------------------------GCAGCAGC.................19200.051000001
...................................................................................AACA-------------GC-----------AACAGCAACAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
....................................................................................ACA-------------GC-----------AACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................CAGCAACAGCAGCAGCAT---C.............................................................................................................................................................................................................................................................................................................................................................................19200.051000001
...................................................................................................................................................................................................................................................................................................................................................................C------AG---------CAGCAGCA----A--------CAGCAAC---------------------------------------------........................................................19200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................GCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGC....................23200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCA................24200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................A----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAG.....................20200.051001000
..................................................................................CAACA-------------GC-----------AACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGCA...................21200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................................AGCA----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GC.......................21200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------------------------------AGCAGCA------------------------GCAGCAGCA................22200.051000100
..........................................................GCAGCAGC---------A-----GCAACA-------------GC-----------AACAGC...............................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
................................................................GC---------A-----GCAACA-------------GC-----------AACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.................................................................C---------A-----GCAACA-------------GC-----------AACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................A----A--------CAGCAAC---------------------------------------------AGCAGCA------------------------GCAGC....................21200.051000001
..................................................................................CAACA-------------GC-----------AACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droBip1
TATACT---------CAA----------------------------CA-------GCAGCAGCAGC---------A-----GGTC----------------C------A--GC------------AACAACAA---CAGCAGCAGCAAA------TCCG--------------CTTTCA------------ACAG---------------C------------AACAA---------------CAACAAC---A------------------------------ACA---------------GCAGCAAA-----------T--GTCTC---C-----------G-CAGGCCGT--GGCC--A--TCCGGCAGCAAATGCA----A--------CGCCAAC---------------------------------------------AACAGCA------------------------GCAGCAGCTGCG-------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACAGCAGC------------------AACAA------GAGCCACAGGA----------GCCT---C------AGCAGCAGC-----AGGAGCCA-------CAGG---A--GC------------CACAGGAG---CCACAGGAGCAAC------AGCAGCA-----------------A------CA---GCAG---------------C------------AACAGCAG------------CAA---CAGGAGC------------------------------------A---------------AC-----------AGGAGTCAAAG----------GAG-CAA--C-AGGAGCCACAGAAGCAACAGCAGA----ACC--------AGGAGCAAC---------------------------------------------AGCAGCC------------------------AGAGCAGCAGCC-------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGACATC------------------AG------------------CA----------TCAGCAGC---------A-----GCAACA-------------GC-----------AGCAGCAGCAGCAGCAACAC---CAGCAGCAACATC------------A-----------------GCAGCAGTA---CCAGCAGCAACA---CT---------AT---------CAGCAACAT------TATCAGC---A-------------------------------------------------------------------------------------------------------------GCAGCAGCACTTGT----ACC--------AGCATCATCCCAGCCTGGCGCTGGCCAACCTGCCACCCGCTGTCGAGGTGGCGGAGTTGCA------------------------ACTGCAGCAGCA-------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCAACA---------CCTCAGCCACCAGCA----------------------------ACAGCAGC---------A-----GCAGCA-------------GC-----------AGCACCAGCAGCAGCAACAA---CTGCAGCAACAGC------------A-----------------GCAGCAGCA---ACAGCAGCAGCA---GCAGCATGCCCAGCAGC---------------------------ATGCCCAGC---------------------------------AACTG--------------------------CAACAT---GCC-----------CAA--C-AGC------AG---------CTGCAGCA----G--------CAGCAAC---------------------------------------------AACAGCA------------------------GCAGCAGCAGCA-------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAG-A---------CAACAA-------------------------CA----------ACAGCAGCAGCAGCAACAACAGC-----A------------G-CAG--------------------CAGCAACAG------CAGCA------------------GCAGCAACAGACGCCCAGCA---------GCAG---------------CA---ACAA---------C------------AGCA------------A------------------------------------------CA-CAG--------CGCCCGCTCCCTCGC---CCCAAAAGGAC-T---------AC------AGCAT---------------------------------------------------------------------------CCCGCTCCACG--------TCGACTGCAGCGTGGAGTACGAGCTGCC-------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCACTT---------TGCCAACCA----------------TCACAGCGCCCAGCAGCAACAGACGC---------A-----GCAG----------------CAGC--------AGCAACAGGAGCAACAGAATCCCCAGCAGCA-----------------------------------------------ACAGCAGC---AGCAGCAGGC---GCAACAGC---------------------------AGATACTCC---------------------------------CGCAGCA---A-----------------------CA---T----------C-TGCAG--C-ACC------TG---------CACAAGCA----T--------CCGCAGC---------------------------------------------AGCTCCA------------------------CCAGCAGCAGCT-------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAA-CA---------CAAAGTCCA---------------------GCA-------ACAACAACAGC---------A-----GCCAAA-------------CC-----------AACAACAACAGCAGCAAAAC---CCACAACAACAGC------------A-----------------GCCATACCA---ACAACAACAACA---GC---------------------------------AGCC------------A---------TACCAACAACAACA-------------------------------------------------------------------------GC------AT---------GTGC----AGCAA--------CAACAAC---------------------------------------------AGCAGCA------------------------AGTGCAGCAACA-------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTGCTC---------CGCCGCCCACAAACAA---CAACAACAA---CA----------ACACCAGC---------AGC-----AGCA---GCAGCAGTAA-CAG--------------------CAACAACAC---TAGCAGCAGCAAC--------------------------------------------AACAAT------AGT------------------------------------AACAAC---A---A------------------CAGCAGCAGCAGCAACAACAA--------------------------CAACAC---ACCAAACGGT-----G-C----AC------AGCAG---CAGC------A----A--------CATCAGC---------------------------------------------AGCAGCA------------------------GCAGCAGCAGCA-------------SizeHit CountTotal NormTotal
No Reads
dm3
ACAACAGC------------------AACAG------CAACAACAGCA----------GCAG---C------AACAACAAC-----A------------G-CAG-----------------------CAACAA---CAGCAGCA------------------GCTGCAACAA-C-CACAGCA---------GCAG---------------CA---ACAACA---------G------------CA------GCAGCAAC---------------------------------AACAGCA---GGAGCAAC-----------AGCA------A----------CTG-CAAT-TGA--AGCCACATCATCTGCAGC-------AAC--TT------CAACTTC---------------------------------------------AACTGTT------------------------GCAGCAGCAGCA-------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................TGCAACAA-C-CACAGCA---------GCAG---------------C...................................................................................................................................................................................................................................................................................................21224.004800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471000000000000000000000000000
...........................................................................................................................................CAGCA------------------GCTGCAACAA-C-CACAG..................................................................................................................................................................................................................................................................................................................................21421.258500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000840000000000000000000000000000
........................................................................................................................................................................ACAA-C-CACAGCA---------GCAG---------------CA---ACA............................................................................................................................................................................................................................................................................................21313.674100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000392000000000000000000000000000
...........................................................................................................................................................................A-C-CACAGCA---------GCAG---------------CA---ACAACA---------................................................................................................................................................................................................................................................................................21311.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321000000000000000000000000000
..........................................................................................................................................................................AA-C-CACAGCA---------GCAG---------------CA---ACAAC..........................................................................................................................................................................................................................................................................................21211.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000
.........................................................................................................................................................................CAA-C-CACAGCA---------GCAG---------------CA---ACAA...........................................................................................................................................................................................................................................................................................2128.501700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000170000000000000000000000000000
.....................................................................................................................................................................GCAACAA-C-CACAGCA---------GCAG---------------....................................................................................................................................................................................................................................................................................................1945.502200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000
.......................................................................................................................................................................AACAA-C-CACAGCA---------GCAG---------------CA---AC.............................................................................................................................................................................................................................................................................................2125.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................CAACAA-C-CACAGCA---------GCAG---------------CA---A..............................................................................................................................................................................................................................................................................................2124.5090000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061000000000000000000000000000
....................................................................................................................................................................TGCAACAA-C-CACAGCA---------GCAG---------------....................................................................................................................................................................................................................................................................................................2024.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000
.....................................................................................................................................................................GCAACAA-C-CACAGCA---------GCAG---------------CA---...............................................................................................................................................................................................................................................................................................2134.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000
.....................................................................................................................................................................GCAACAA-C-CACAGCA---------GCAG---------------C...................................................................................................................................................................................................................................................................................................2043.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000
............................................................................................................................................AGCA------------------GCTGCAACAA-C-CACAGC.................................................................................................................................................................................................................................................................................................................................2142.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000091000000000000000000000000000
....................................................................................................................................................................TGCAACAA-C-CACAGCA---------GCA....................................................................................................................................................................................................................................................................................................................1922.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000
.....................................................................................................CAG-----------------------CAACAA---CAGCAGCA------------------GCTGCAACAA-C-.......................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CTGCAACAA-C-CACAGCA---------GCAG---------------....................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
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........................................................................................................................................................................ACAA-C-CACAGCA---------GCAG---------------CA---ACAA...........................................................................................................................................................................................................................................................................................2222.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
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....................................................................................................................................................C-----------------------------------------------AAC---AATAGCAGC------------------------------------AAC---A---G------------------C.................................................................................................................................................................................................................................1911.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................ACAACACCATC---------------------------------------------AGCAGCA------------------------.........................1820.5010010
.......................................................................................................................................................................................................................................................AAC---A---G------------------CGGCAGCAACAGCAGC..................................................................................................................................................................................................................2150.2010010
..........................AACAA------------CAACA----------GCAGCAGC---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATC---------------------------------------------AGCAGCA------------------------GCAGCAGCAGCA-------------22200.0510001
.............................AA------------CAACA----------GCAGCAGC---------AGC-----AGCA-------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
droYak3
GCAGCAACACAGTCA---------GCAGCAAAGTCAG---CAGCAGCA----------ACAGCAGCAGC------A-----GCAACA-------------AC------A--GC------------AACAGCAG---CAGCAG-----------------------------------------CAGCA---ACAGCAAC---AGCAGCAGC------------------AGCAAC---------AA------------------------------------------------CAGCAACAGCAG----------------------------------------CAA--C-AGC------AG---------CAACAGCA----G--------CAACAAC---------------------------------------------AACAGCA------------------------GCAACAGCAGCAGTTACAGCTGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................AGCAAC---AGCAGCAGC------------------AGCAAC---------AA------------------------------------------------CAGC............................................................................................................................................................................................................27201.2024000000000024
............................................AGCA----------ACAGCAGCAGC------A-----GCAACA-------------AC------A--GC------------.........................................................................................................................................................................................................................................................................................................................................................................................27201.2024000000000024
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------------------GCAACAGCAGCAGTT..........2230.33100000010000
...................................................................................AACA-------------AC------A--GC------------AACAGCAG---CAGCAG-----------------------------------------CAGC...........................................................................................................................................................................................................................................................................................................................2740.25100100000000
..........................................................................................................................................................................................................................................................................................................................................................................AG---------CAACAGCA----G--------CAACAAC---------------------------------------------AACAGCA------------------------.........................25120.08101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC---------------------------------------------AACAGCA------------------------GCAACAGC.................22180.06100100000000
...........................................................................A-----GCAACA-------------AC------A--GC------------AACAGCAG---C.............................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
..............................................................................................................................ACAGCAG---CAGCAG-----------------------------------------CAGCA---.......................................................................................................................................................................................................................................................................................................................18200.05100010000000
...................................................................................................................................................................................................CAAC---AGCAGCAGC------------------AGCAAC---------A.................................................................................................................................................................................................................................................................20200.05101000000000
..........................................................................................................................................GCAG-----------------------------------------CAGCA---ACAGCAAC---AGCAGCAGC------------------A................................................................................................................................................................................................................................................................................27200.05101000000000
.............................................GCA----------ACAGCAGCAGC------A-----GCAACA-------------A.................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
.........................................................................................................................................................................................................................................AC---------AA------------------------------------------------CAGCAACAGCAG----------------------------------------CA..........................................................................................................................................................18200.05100010000000
.....................................................................................................................................................................................................................................AGCAAC---------AA------------------------------------------------CAGCAACAGCAG----------------------------------------C...........................................................................................................................................................21200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACAGCA----G--------CAACAAC---------------------------------------------AACAGC..................................................20200.05100100000000
....................................................................................................................................G---CAGCAG-----------------------------------------CAGCA---ACAGCAAC---............................................................................................................................................................................................................................................................................................................20200.05101000000000
...............................................................................................................GC------------AACAGCAG---CAGCAG-----------------------------------------CAGCA---.......................................................................................................................................................................................................................................................................................................................21200.05100001000000
....................................G---CAGCAGCA----------ACAGCAGCAGC------A-----GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001000000
....................................................................................ACA-------------AC------A--GC------------AACAGCAG---CA............................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000
...............................................................................................................................................................................................................................................................................................................CAG----------------------------------------CAA--C-AGC------AG---------CAACAGCA----.....................................................................................................................20200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................AG---------CAACAGCA----G--------CAACAAC---------------------------------------------AA......................................................20200.05101000000000
............................................................................................................................................AG-----------------------------------------CAGCA---ACAGCAAC---AGCAGC......................................................................................................................................................................................................................................................................................................21200.05101000000000
....................................................................................................................................................................................................................................................AA------------------------------------------------CAGCAACAGCAG----------------------------------------CAA--C-AG...................................................................................................................................................20200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------AACAGCA------------------------GCAACAGCAGCA.............20200.05100010000000
...........................................................................................................................................................................................................................................................................................................................................................AA--C-AGC------AG---------CAACAGCA----G--------C...........................................................................................................18200.05100010000000
droEre2
ATGGA----------TGCCAACTA---A------------CAACAGCA----------GCAGCAGC---------AGCAGC-----A-------------GCAG-----------------------CAACAA---TGGCAACA------------------ACTTTGACAA-CTTGCAACT---------ACAG---------------C------------GACAACGA------------CAA---CGAAAAC------------------------------------A---A------------CAAGGCGCAAT-GT---TA---A----------C-GCCA-G-CGTGC------ATTGT---TAGC-------AGA--TTC-----------------------------------------------AAGTGTCTGGCGCTGCG------------------------GCAGCAGAGGCG-------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................AGCAGC---------AGCAGC-----A-------------GCAG-----------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................19200.2550000050

Generated: 05/17/2015 at 10:47 PM