ID:

dmo_653

 Coordinate:

scaffold_6473:3090360-3090443 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_16175:2]; exon [dmoj_GLEANR_16175:1]; CDS [Dmoj\GI15436-cds]; CDS [Dmoj\GI15436-cds]; intron [Dmoj\GI15436-in]; Antisense to intron [Dmoj\GI15160-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy+
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_4085:4380-4398 +
  2. dmo_464  scaffold_6328:598846-598864 +
  3. scaffold_6359:322558-322576 +
  4. scaffold_6359:2713278-2713296 +
  5. scaffold_6359:3221700-3221718 +
  6. scaffold_6473:1438225-1438243 +
  7. dmo_653  scaffold_6473:3090384-3090402 +
  8. scaffold_6473:8735328-8735346 +
  9. scaffold_6473:14029171-14029189 +
  10. scaffold_6496:2894947-2894965 +
  11. scaffold_6496:7782633-7782651 +
  12. scaffold_6496:8516926-8516944 +
  13. scaffold_6500:10819361-10819379 +
  14. scaffold_6500:14860242-14860260 +
  15. scaffold_6500:17142444-17142462 +
  16. scaffold_6540:8507121-8507139 +
  17. scaffold_6540:24530714-24530732 +
  18. scaffold_6540:26277541-26277559 +
  19. scaffold_6680:4974974-4974992 +
  20. scaffold_6680:20623604-20623622 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------##################################################
AGGTCGTACAGCAACAGCAGCAACAGCAAGTACAGCAAGCGGTTGTCGCCGTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGTCCAGCAACAGCAGGTGCAGGTGCAGCAGCAGGTCCAGCAGCAGGTGCAGCAGGCCAACACGAACGGCAACTCGGGCGGCGCCCAGAACGG
**************************************************************************..((.((.(((...(((...((.((....)).)))))...))).)).))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V041
embryo
 M046
female body
 V049
head
 V110
male body
.................................................................................................GCAACAGCAGGTGCAGGTGCAGCAGCAG........................................................... 28 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................GGCAACTCGGGGGGCGCCCAG..... 21 1 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................CGGCAACTCGGGCGGCGCCC....... 20 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................ATGCCAACACGAACGGCAAC.................... 20 1 1 1.00 1 1 0 0 0 0
.....................................................................................................CAGCAGGTGCAGGTGCAGCAGCAGGT......................................................... 26 0 1 1.00 1 0 0 0 0 1
............................................................................................................................................................ACGGCAACTCGGGCGGCGCCCAGAAC.. 26 0 1 1.00 1 0 0 0 1 0
................................................................................................................GGTGCAGCAGCAGGTCCAGC.................................................... 20 0 2 0.50 1 1 0 0 0 0
.......................................................................................................GCAGGTGCAGGTGCAGCA............................................................... 18 0 2 0.50 1 1 0 0 0 0
...............................................................................................................AGGTGCAGCAGCAGGTCCAGCA................................................... 22 0 2 0.50 1 1 0 0 0 0
....................................AAGCCGATGTCGCCGTGC.................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0
...........................AATTACAGCTAGCGGTTGTG......................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
...................................................................................................................GCAGCAGCAGATCCAGCAGCA................................................ 21 1 20 0.05 1 0 1 0 0 0
..........................................................................CAGCAGCAGCAGCAGCAGG........................................................................................... 19 0 20 0.05 1 0 0 1 0 0
.............................................................GCAGCAACAGCAGCAGCAGCAGCAGC................................................................................................. 26 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TCCAGCATGTCGTTGTCGTCGTTGTCGTTCATGTCGTTCGCCAACAGCGGCACGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGTCGTCCAGGTCGTTGTCGTCCACGTCCACGTCGTCGTCCAGGTCGTCGTCCACGTCGTCCGGTTGTGCTTGCCGTTGAGCCCGCCGCGGGTCTTGCC
***********************************************************..((.((.(((...(((...((.((....)).)))))...))).)).))..************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
.....................................................................................................GTCGCCCACGCCCACGTCGTGGTC........................................................... 24 3 3 0.67 2 2
................................................................................................................................GTCGTCGTCCACGTCGTCC..................................... 19 0 9 0.11 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:3090310-3090493 + dmo_653 AGGT-------CGTACAGC-AACAGCAGC------------AAC---AGCAA------------GT---------------------------------------------ACAGCAAGCGGT----TGTCGCCGTGCA---------------GCAGCAGCAGCA---------------ACAGCAGCAGC---------AGCAGCAG------------CAG---------C---------------AGGTCCAGCAACAGCAGGTG-----------C---AG---------------GTGCA------------GCA---------GCAGGTC--CAGCAGCAGG-TGC-----------------------------AGC------AGGCCAACACGAACGGCAACTCGGGC---GGCGCCC---------AGAACGG
droVir3 scaffold_12932:1374871-1375066 - AGGT-------CGTGCAGC-AGCAGCAAG------------TGC---AGCAA------------GT---------------------------------------------ACAGCAGGCAGT----TGTTGCCGTACA---------------GCAGCAGCAGCA---------------GCAGCAACAGC---------AAC---AACAGCAGCAACAG------------C---AG---C------AGCAGCAGCAGGTCGTGCAGCAGCAGCAGCA--GCAG---------------------------------------------GTCGTC--CAGCAGCAGG-TGC-----------------------------AAC------AGGCCAACACGAACGGCAACTCAGGC---GGCGCAC---------AGAACGG
droGri2 scaffold_15203:5688374-5688578 + AACA-------GCAGCAGC-AAGTGGTGC------------AAC---AGCAG------------CA------------------------GCAAGT---------------ACAGCAAGCAGT----TGTCGCCGTGCA------------ACA---GCAGCA---------GC---AGCAG---CAACAAC---------AGC------------------AGCAGCAA---GTGGTGC---------AACAGCA---GCAGCAAGCG-----------C---AG---------------GTGCA------------ACA---------GCAGGTG--CAACAGCAAG-TGC-----------------AACAGCAAGTCCAGC------AGGCAAACACAAATGGCAACACGGGC---GGCGCCC---------AAAACGG
droWil2 scf2_1100000004511:5835635-5835822 + AGTC-------GCATCATC-AGCAGCAGC------------AGC---AACAA------------CA------------------------GGAGCAACAGCAGCAGCAACTG----------------------CAACA---------------ACAACAGGAGCA---------------ACAGCAACAGC---------AACAGCAG---------------------------------------------CAGCATCAGCAGCAA---------CA--ACAGGAGCAGCAGCAG---CAGC---------------A------ACAACAGGAG--CAACAGCAAC------AGCAGCAACAACAGCAGC---------A--------------------------GCAACAAC---AGCCGCA---------GGAACAG
dp5 XR_group6:12701984-12702150 + AGCA-------GCAACAGC-AGCATCAGC------------AGC---AGAAG---------CAGC---------------------------AGCAGCAACAG-------------------------------------CAGCAACAGCAGCA------------------------------------GCAGC---AGAAGCAGCAG------------CAG---------C---------------AACAGCAGCAACAGCAGCAG-----------CAACAGC---------AG---CAGCA------------GCAACAGCAACAAC---AGCA--------------GCA------GCAACAGCAGC---------A--------------------------GCAACAGC---AGCAGCA---------ACAGCAG
droPer2 scaffold_25:402330-402511 - AGCA-------GGAGCAGG-AGCAGCAGC------------AGTACCAGAAG---------CAGC------------------------------AGCAGCAG----------------------------------CA------------------GCAGTA---CCAGAAGCAGCAGCAT------------------------CAGCAGCA------GCAGCAG------C------------------AGTACCAACAGCAGCAG---------GA--GCAG---------------GAGCAGCAGCAGTGGGAACA---------GCAGCAG--CAACGGCAGCG---GCA------GCAGTACCAGC---------A--------------------------GCAGCGGC---AGTGCCA---------GCAGCAG
droAna3 scaffold_13266:271940-272127 - ACGT-------GCAACAGC-AGCAGCAGC------------AAC---AACAG------------CCACAGCAATCGCTCTCC---------------CAGCAG----------------------------------CAGCAACAG---CAACT---ACTCGG---CCATCAGC------------------------AGCAACATCACCTCCA------GCAG---------C---------------AGCAGCAGCAACAGCAACTG-----------A---TG-----------G-CCCATCAGCAACACTCGG---T---------GG---TGCA--------------GCA------GCAACAGCAGC---------A--------------------------GCAACATC---ACCACCT---------ACAACAG
droBip1 scf7180000396431:787436-787594 + AGCA-------GCAGCAGC-AATCCCAGC------------AGC---AACAG------------CA---------------------------------------------ACAGCAGGCGGT----GGTGC---------------TCCACCA---------------GCAGCAGCAGCAA------------------------CAACAACA------GCAGCAGCAA---AAGCAC---C------AACAGCA---TCA---GCACCAGCAGCAGCA--GCAG---------------------------------------------GTTCTG--CACCAGCAGG-CTC-----------------------------AA----------------------------CTGGT---GGCGCCC---------CAA---A
droKik1 scf7180000302220:11875-12052 + AGCA-------GAAGCAGC-ACCAGCAGC------------AGC---AGCAC------------CA------------------------GCAGCAGCAGCA-------------------------------CCAGCAGCAGCAGCACCACCA---------------GCAGC------------------------AGCAGCAACAA------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AG---------------CACCA------------ACA---------GCAGCAA--CAGCACCAGC------T------GC------------------AGC------ATCACAACA---------ACAACAAC---AGCAGCAGTCTTTCCCTCAACAA
droFic1 scf7180000454050:516221-516394 - AGCA-------GCAACAGC-AGCAGCAGC------------AGG---AGCAG------------CA---------GCGCACCTCGC------TGCATCCGCAG----------------------------------CA------------GAT---CCACCA---------CC------------ACCACC------------AACAACAGCAGCAACAGCAG---------C---------------AGCAGCAGCAGCAGCAGCAG-----------C---AG---------------ATGCA------------GCA---------GCAGATGCA--------------ACA------ACAGCAGCAGC---------A--------------------------GCAACAGC---AGCAA---TCCT--CGAGAACGG
droEle1 scf7180000491023:299392-299573 - GGTC-------GTAC-AGGGCCCTCGAGC------------TGC---CACAG------------T----------------------------------------------ATGCCAAGCAGGTGGCGCAG---CTACA---------------GCAGCAGCAGCA---------------ACAGCAGCAGC---------AACAGCAG------------CAG---CAG---CAGCAT---CAATCGCACCACCAGCAACAGCAGCAG-----------C---AGC------AGCAGGACCAGC-GCACCA-------------------------------------------C------TCTGCATCCGC---------A--------------------------GATCCACC---ACCACCA---------CCAACAG
droRho1 scf7180000779334:988900-989068 - AGCA-------CCTACAGC-AACATCAGC------------AGC---AACAG---------CAGC---------------------------AGCAACAGCAG----------------------------------CAACATCAG---CAGCA------------------ACA---------GCAGC---------AGCAGCAACAG------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AAC------AGCAG---CA----------------CAACAGCAGCAGCCACAG--------CA------GCA------GCAGCAACTGC---------A--------------------------ACTGCAGC---AGCAACA---------GCAACTG
droBia1 scf7180000301760:2811932-2812092 + AGTT-------GCAACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------GCAAC------A-------------------------------CGTGCAGCAGCAGCAACACCA---------------GCAGC------------------------AGCAGCATCAA------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AA---------------CAGCA------------GCA---------GTTCCAG--CAGCAGCA------GCA------GCAGCATCTCC---------A--------------------------CCAGCAGC---AACAGGA---------TCAACTG
droTak1 scf7180000414445:283359-283541 + GGGCCGTCTCAGCAACATC-AGCAGCAGC-------A--GCAGCAAAATATG---------CATCA------------------------TCACCAACAGCAG----------------------------------------------------------CA---------GC---AGCAC---CAACAAC------AGCAGCAGCAG------------------------CATATGCAAC------AGCAGCAGCAACACCAACAG-----------C---AG---------------CAGCA------------ACA---------ACATCAA--CAGCAGCAGCA---GCA------ACATCAACAGC---------A--------------------------GCAGCAGC---AGCATCA---------ACAACAG
droEug1 scf7180000409524:214457-214623 + AGCA-------GCAGCAGC-AGCAACAGA------------ATA---TGCAT------------CA------------------------TCATCAACAGCAG-------------------------------CAGCAGCATCAACAACAACA------------------------------------GCAGC---AGCAGCAG---------------------------CATATGC---------AACAGCATCAGCAGCAGCAT-----------C---AAC------AGCAG---CAGCA------------TCA---------ACAGCAACA--------------TCA------ACAGCAACAGC---------A--------------------------TCAACAGC---AGCAGCA---------ACAACAT
dm3 chrX:3749757-3749933 + AGGA-------GCCACAGC-AGA-TATGC----AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGCAACAACAG-------------------------------------CAGCAGCAGCAACA------------------------------------ACAGC---AGCAGCAACAA------------CAG---------C---------------AGCAGCAGCAACAACAGCAG-----------CAACAAC---------AG---CAGCA------------GCAACAGCAGCAGCAGCAG--CA------------ACA------CCAGGAGTTGT---------A--------------------------CCGCCAGC---AGCAGCT---------ACATC-G
droSim2 2r:7259656-7259833 + ATCA-------ACAACAGC-AGCAACATC------------TTC---ATGCT------------------------------------------------------------CAGCA-GCTCT----TGGCCCAGA--------G------TCAGTTGCAGCAGCA---------------ACAGCAACAGC------------------------------AGCAGCAGCAGC---AAC---------ACCACCA---GCAGCAACAG-----------C---AG-----------------GCA------------GCA---------GCCGCCG--CAGCAGCTGG-TGT------------------GC---ATGGCCAGCATGGGGGACACGTGA---------CG---------CACGCCG---------ACATCGG
droSec2 scaffold_4:2907995-2908176 + AGGC-------CGTGGAGC-AACAGCAGA------------TGC---AGCAG------CAGCTGCA---------CTACGATTCGCACCAGGAGCTGCAGTT-------------------------------CGAGCAGCATCAGCCGCACCA---------------GTCGC------------------------ATCAGCAACAT------------CAG---------C---------------AGCAGCAGCTGCAGCATCAG-----------C---AG---------------CAGCA------------GCA---------GCTGCAG-----------------CA------TCAGCAGCAGC---------A--------------------------GCAACATCAGCAGCAACA---------AAATCAG
droYak3 X:19447741-19447901 - AGCA-------GCAACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------GCAGCAGCAGCAG----------------------------------CAGCAACAG---CAGCA---------------------------------ACAAC------AGCAGCAGCAG------C------AA---------C---------------AGCAGCAGCAGCAGCAGCAGCAGCAG-----C---AG---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAGCAGC---AGCAGCA---------ACAACAG
droEre2 scaffold_4690:4989619-4989780 + ATGACG-----ACAACAAT-AA-----GCAAGCAGGAGC--AGC---AGCAGCAGCAGCAGCAGC------------------------------------AG----------------------------------CAGCAACAG---CAGCA------------------------------------ACAGCAGCAGCAGCAACAG------------CAG---------C------------------AGCAGCAACAGCAGCAG-----------C---AG---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAACAGC---AGCAGCA---------ACAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGGT-------CGTACAGC-AACAGCAGC------------AAC---AGCAA------------GT---------------------------------------------ACAGCAAGCGGT----TGTCGCCGTGCA---------------GCAGCAGCAGCA---------------ACAGCAGCAGC---------AGCAGCAG------------CAG---------C---------------AGGTCCAGCAACAGCAGGTG-----------C---AG---------------GTGCA------------GCA---------GCAGGTC--CAGCAGCAGG-TGC-----------------------------AGC------AGGCCAACACGAACGGCAACTCGGGC---GGCGCCC---------AGAACGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................GCAACAGCAGGTG-----------C---AG---------------GTGCA------------GCA---------GCAG.............................................................................................................2811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAACTCGGGC---GGCGCCC---------.......2011.001010000
....................................................................................................................................................................................................................................................................CAGCAGGTG-----------C---AG---------------GTGCA------------GCA---------GCAGGT...........................................................................................................2611.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAACTCGGGC---GGCGCCC---------AGAAC..2611.001001000
.............................................................................................................................................................................................................................................................................................G---------------GTGCA------------GCA---------GCAGGTC--CAGC....................................................................................................2020.501000010
......................................................................................................................................................................................................................................................................GCAGGTG-----------C---AG---------------GTGCA------------GCA---------.................................................................................................................1820.501000010
............................................................................................................................................................................................................................................................................................AG---------------GTGCA------------GCA---------GCAGGTC--CAGCA...................................................................................................2220.501000010
............................................................................................................................................................................................CAGC---------AGCAGCAG------------CAG---------C---------------AGG...............................................................................................................................................................................................19200.051100000
................................................................................................................................................................GCAGCA---------------ACAGCAGCAGC---------AGCAGCAG------------C.............................................................................................................................................................................................................................26200.051000010
droVir3
AGGT-------CGTGCAGC-AGCAGCAAG------------TGC---AGCAA------------GT---------------------------------------------ACAGCAGGCAGT----TGTTGCCGTACA---------------GCAGCAGCAGCA---------------GCAGCAACAGC---------AAC---AACAGCAGCAACAG------------C---AG---C------AGCAGCAGCAGGTCGTGCAGCAGCAGCAGCA--GCAG---------------------------------------------GTCGTC--CAGCAGCAGG-TGC-----------------------------AAC------AGGCCAACACGAACGGCAACTCAGGC---GGCGCAC---------AGAACGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................A--GCAG---------------------------------------------GTCGTC--CAGCAGCAGG-T............................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...........................................C---AGCAA------------GT---------------------------------------------ACAGCAGGCAGT----TGTTGCC.....................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCAGCAGCAGGTCGTGCAGC.............................................................................................................................................................................2020.501010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AGCAGCAGCAGGTCGTGCA...............................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CAGCAGCAGGTCGTGC................................................................................................................................................................................1630.331000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................CAGCAACAGC---------AAC---AACAGCAG....................................................................................................................................................................................................................................21200.102000000000000000000000000000000200000000000000000000000000000000
...............................................................................................................................................................AGCAGCA---------------GCAGCAACAGC---------AA................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................GC---------AAC---AACAGCAGCAACAG------------C---AG---C------A.................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAC---AACAGCAGCAACAG------------C---..............................................................................................................................................................................................................18200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AGCAACAGC---------AAC---AACAGCAGCAAC................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................C---------AAC---AACAGCAGCAACAG------------C---AG---C------AGCAGC............................................................................................................................................................................................28200.051000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CAGCAGCAGCA---------------GCAGCAACAGC---------A.................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GCAGCA---------------GCAGCAACAGC---------AA................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CAACAGC---------AAC---AACAGCAGCAACAG------------C---A.............................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................C---------AAC---AACAGCAGCAACAG------------C---A.............................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CAACAGC---------AAC---AACAGCAGCA..................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAGCAACAG------------C---AG---C------AGCAGCAG..........................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................CAGCAGCAACAG------------C---AG---C------AGCAGCAG..........................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................GCAACAG------------C---AG---C------AGCAGCAGCAG.......................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
AACA-------GCAGCAGC-AAGTGGTGC------------AAC---AGCAG------------CA------------------------GCAAGT---------------ACAGCAAGCAGT----TGTCGCCGTGCA------------ACA---GCAGCA---------GC---AGCAG---CAACAAC---------AGC------------------AGCAGCAA---GTGGTGC---------AACAGCA---GCAGCAAGCG-----------C---AG---------------GTGCA------------ACA---------GCAGGTG--CAACAGCAAG-TGC-----------------AACAGCAAGTCCAGC------AGGCAAACACAAATGGCAACACGGGC---GGCGCCC---------AAAACGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................CAGT----TGTCGCCGTGCA------------ACA---GCAGCA---------...............................................................................................................................................................................................................................................................................2511.00110
droWil2
AGTC-------GCATCATC-AGCAGCAGC------------AGC---AACAA------------CA------------------------GGAGCAACAGCAGCAGCAACTG----------------------CAACA---------------ACAACAGGAGCA---------------ACAGCAACAGC---------AACAGCAG---------------------------------------------CAGCATCAGCAGCAA---------CA--ACAGGAGCAGCAGCAG---CAGC---------------A------ACAACAGGAG--CAACAGCAAC------AGCAGCAACAACAGCAGC---------A--------------------------GCAACAAC---AGCCGCA---------GGAACAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................AGCAG---CAGC---------------A------ACAACAGGAG--C.......................................................................................................2140.25100010
......................CAGCAGC------------AGC---AACAA------------CA------------------------GGAGC............................................................................................................................................................................................................................................................................................................................................................2240.25100010
....................................................................................................................................................................................................................................................................................................CAGCAG---CAGC---------------A------ACAACAGGAG--C.......................................................................................................2240.25100010
.......................AGCAGC------------AGC---AACAA------------CA------------------------GGAGC............................................................................................................................................................................................................................................................................................................................................................2140.25100010
..........................................................................................................................................................ACAACAGGAGCA---------------ACAGCAACA.............................................................................................................................................................................................................................................................2160.17100010
...........................GC------------AGC---AACAA------------CA------------------------GGAGCAAC.........................................................................................................................................................................................................................................................................................................................................................2060.17100010
..........................................GC---AACAA------------CA------------------------GGAGCAACAG.......................................................................................................................................................................................................................................................................................................................................................1960.17100010
.......................................................................................................................................................................................................................................................................................................................................ACAACAGGAG--CAACAGCAAC------A.......................................................................................2160.17100010
...............................................................................................................................................................................................................................................................................................................GC---------------A------ACAACAGGAG--CAACAG..................................................................................................1960.17100010
.........................................................................................................................................................................................................................................................................................................G---CAGC---------------A------ACAACAGGAG--CAAC....................................................................................................2060.17100010
.............................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------A--------------------------GCAACAAC---AGC....................20200.15300030
.................................................................A------------------------GGAGCAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................19200.10200020
............CATCATC-AGCAGCAGC------------AGC---AACAA------------C..........................................................................................................................................................................................................................................................................................................................................................................................25110.09100010
............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---------A--------------------------GCAACAAC---.......................18200.05101000
...........................................................................................................................................................................................................CAGCAG---------------------------------------------CAGCATCAGCAGCA...............................................................................................................................................................................20200.05100010
....................................................................................................................................................................................................................................................................................................................................................AACAGCAAC------AGCAGCAAC...............................................................................18200.05100010
........................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGC---------A--------------------------GCAACAAC---AG.....................24200.05101000
.....................................................................................................................................................................................ACAGCAACAGC---------AACAGCAG---------------------------------------------CA...........................................................................................................................................................................................21200.05100010
..........................................................................................................................................................................................................................................................................................................................................................AAC------AGCAGCAACAACAGCA........................................................................19200.05100010
...........................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAACAACAGCAGC---------A--------------------------GCA...............................24200.05100010
.........................................................................................................................................................................................................AACAGCAG---------------------------------------------CAGCATCAGCA..................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................................................................................................................................................AAC------AGCAGCAACAACAGCAGC---------A--------------------------..................................22200.05100010
dp5
AGCA-------GCAACAGC-AGCATCAGC------------AGC---AGAAG---------CAGC---------------------------AGCAGCAACAG-------------------------------------CAGCAACAGCAGCA------------------------------------GCAGC---AGAAGCAGCAG------------CAG---------C---------------AACAGCAGCAACAGCAGCAG-----------CAACAGC---------AG---CAGCA------------GCAACAGCAACAAC---AGCA--------------GCA------GCAACAGCAGC---------A--------------------------GCAACAGC---AGCAGCA---------ACAGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............CAGC-AGCATCAGC------------AGC---AGAAG---------C.............................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
......................CATCAGC------------AGC---AGAAG---------CAGC---------------------------...............................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
......................................................................................................................................................................................................................................................................................................................................AACAAC---AGCA--------------GCA------GCAACAGC.........................................................................21200.1020200000000
.............................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG-----------CAACAGC---------...................................................................................................................................................23200.0510010000000
...................................................................................................................................................................................................................................................................................................................................................................................GC---------A--------------------------GCAACAGC---AGCAGCA---------ACAGC..23200.0510010000000
...............................................................GC---------------------------AGCAGCAACAG-------------------------------------CAGCAACAGC.....................................................................................................................................................................................................................................................................................................23200.0510100000000
.............................................................................................................................................................................................................GCAG------------CAG---------C---------------AACAGCAGCAAC......................................................................................................................................................................................20200.0510100000000
.................................................................................................................................................................................................................................................................................................................A------------GCAACAGCAACAAC---AGCA--------------GC........................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................A------GCAACAGCAGC---------A--------------------------GCAACAGC---AGCAGC.................27200.0510000000001
............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---------A--------------------------GCAACAGC---AGCA...................22200.0510100000000
............................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAG-----------CAACAGC---------...................................................................................................................................................24200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................CAACAAC---AGCA--------------GCA------GCAACAGCAG.......................................................................24200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................A------GCAACAGCAGC---------A--------------------------GCAACAGC---AGC....................24200.0510000000001
...............................................................................................................................................................................................................................................................AGCAACAGCAGCAG-----------CAACAGC---------AG---C.............................................................................................................................................24200.0510000000001
.................................................................................................................................................................................................................................................................................................................................ACAGCAACAAC---AGCA--------------GCA------GCA..............................................................................21200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................GCA------GCAACAGCAGC---------A--------------------------GCAACAGC---.......................23200.0510010000000
.............................................................................................................................................................................................................GCAG------------CAG---------C---------------AACAGCAGCAACAGC...................................................................................................................................................................................23200.0510100000000
................................................................C---------------------------AGCAGCAACAG-------------------------------------CAGCAACAGCA....................................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................GC---------------------------AGCAGCAACAG-------------------------------------CAGCAAC........................................................................................................................................................................................................................................................................................................20200.0510100000000
...............................................................................................................................................................................................................................................................................................................GCA------------GCAACAGCAACAAC---AGCA--------------GCA------.................................................................................24200.0510000100000
................................................................................................................................................................................................................................................................GCAACAGCAGCAG-----------CAACAGC---------AG---CAGC..........................................................................................................................................26200.0510000000001
...........................................................................................................................................................................................................................................................................................CAGC---------AG---CAGCA------------GCAACAGC.....................................................................................................................19200.0510000100000
..............................................................................................................................................................................................................CAG------------CAG---------C---------------AACAGCAGCAACA.....................................................................................................................................................................................20200.0510000010000
.................................................................................................................................................................................................................................................................................................................................................................GCA------GCAACAGCAGC---------A--------------------------GCAACA............................21200.0510000100000
..............................................................................................................................................................................................................CAG------------CAG---------C---------------AACAGCAGCAACAGCA..................................................................................................................................................................................23200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................GC---------A--------------------------GCAACAGC---AGCAGCA---------ACA....21200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................A--------------GCA------GCAACAGCAGC---------A--------------------------GCAACAGC---.......................24200.0510010000000
..................................................................................................................................................................................................................................................................AACAGCAGCAG-----------CAACAGC---------AG---CA............................................................................................................................................22200.0510100000000
..............................................................AGC---------------------------AGCAGCAACAG-------------------------------------CAGCAACAGCAGCA------------------------------------.............................................................................................................................................................................................................................................................28200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................GCA------GCAACAGCAGC---------A--------------------------GCAACAGC---AGCA...................27200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------A--------------------------GCAACAGC---AGC....................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................AGCAACAAC---AGCA--------------GCA------GCAA.............................................................................20200.0510000100000
................................................................C---------------------------AGCAGCAACAG-------------------------------------CAGCAACA.......................................................................................................................................................................................................................................................................................................20200.0510000010000
.........................................................................................................................................................................................................................................................................GCAG-----------CAACAGC---------AG---CAGCA------------GCA..........................................................................................................................21200.0510000100000
..........................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGC---------A--------------------------GCAACAGC---AGCAGC.................26200.0510000000001
.............................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG-----------CAACA..............................................................................................................................................................21200.0510000100000
.........................................................................................................................................................................................................................................................................GCAG-----------CAACAGC---------AG---CAGCA------------GCAACAGCA....................................................................................................................27200.0510000000001
..............................................................................................................................................................................................................................................................CAGCAACAGCAGCAG-----------CAACAGC---------AG---CA............................................................................................................................................26200.0510001000000
............................................................................................................................................................................................................AGCAG------------CAG---------C---------------AACAGCAGCAACAGCAGCA...............................................................................................................................................................................28200.0510100000000
.............................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG-----------CAACAGC---------AG---CA............................................................................................................................................27200.0510100000000
...............................................................................................................................................................................................................................................................AGCAACAGCAGCAG-----------CAACAGC---------AG---CAGC..........................................................................................................................................27200.0510000000001
........................................................................................................................................................................................................................................................................................CAACAGC---------AG---CAGCA------------GCAACAGC.....................................................................................................................22200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................CA------GCAACAGCAGC---------A--------------------------GCAACAGC---AGCA...................26200.0510001000000
...................................................................................................................................................................................................................................................................ACAGCAGCAG-----------CAACAGC---------AG---C.............................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................................................AG---CAGCA------------GCAACAGCAACAAC---A...........................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................................GCAACAGCAACAAC---AGCA--------------GCA------GC...............................................................................23200.0510000001000
.........................................................................................................................................................................................................................................................................................................G---CAGCA------------GCAACAGCAACAAC---AGC.........................................................................................................23200.0510000100000
droPer2
AGCA-------GGAGCAGG-AGCAGCAGC------------AGTACCAGAAG---------CAGC------------------------------AGCAGCAG----------------------------------CA------------------GCAGTA---CCAGAAGCAGCAGCAT------------------------CAGCAGCA------GCAGCAG------C------------------AGTACCAACAGCAGCAG---------GA--GCAG---------------GAGCAGCAGCAGTGGGAACA---------GCAGCAG--CAACGGCAGCG---GCA------GCAGTACCAGC---------A--------------------------GCAGCGGC---AGTGCCA---------GCAGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................AT------------------------CAGCAGCA------GCAGCAG------C------------------A..............................................................................................................................................................................................19200.051001000
droAna3
ACGT-------GCAACAGC-AGCAGCAGC------------AAC---AACAG------------CCACAGCAATCGCTCTCC---------------CAGCAG----------------------------------CAGCAACAG---CAACT---ACTCGG---CCATCAGC------------------------AGCAACATCACCTCCA------GCAG---------C---------------AGCAGCAGCAACAGCAACTG-----------A---TG-----------G-CCCATCAGCAACACTCGG---T---------GG---TGCA--------------GCA------GCAACAGCAGC---------A--------------------------GCAACATC---ACCACCT---------ACAACAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............AACAGC-AGCAGCAGC------------AAC---A...........................................................................................................................................................................................................................................................................................................................................................................................................19200.459000009
.............AACAGC-AGCAGCAGC------------AAC---AAC.........................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
...............................................................................................................................................................................................................................G---------C---------------AGCAGCAGCAACAGCAACT...............................................................................................................................................................................21110.091000001
..GT-------GCAACAGC-AGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................18150.071100000
...........GCAACAGC-AGCAGCAGC------------AAC---AAC.........................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................................................................A--------------GCA------GCAACAGCAGC---------A--------------------------GCAA..............................20200.051010000
..................C-AGCAGCAGC------------AAC---AACAG------------C..........................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
droBip1
AGCA-------GCAGCAGC-AATCCCAGC------------AGC---AACAG------------CA---------------------------------------------ACAGCAGGCGGT----GGTGC---------------TCCACCA---------------GCAGCAGCAGCAA------------------------CAACAACA------GCAGCAGCAA---AAGCAC---C------AACAGCA---TCA---GCACCAGCAGCAGCA--GCAG---------------------------------------------GTTCTG--CACCAGCAGG-CTC-----------------------------AA----------------------------CTGGT---GGCGCCC---------CAA---ASizeHit CountTotal NormTotal
No Reads
droKik1
AGCA-------GAAGCAGC-ACCAGCAGC------------AGC---AGCAC------------CA------------------------GCAGCAGCAGCA-------------------------------CCAGCAGCAGCAGCACCACCA---------------GCAGC------------------------AGCAGCAACAA------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AG---------------CACCA------------ACA---------GCAGCAA--CAGCACCAGC------T------GC------------------AGC------ATCACAACA---------ACAACAAC---AGCAGCAGTCTTTCCCTCAACAASizeHit CountTotal NormTotal
No Reads
droFic1
AGCA-------GCAACAGC-AGCAGCAGC------------AGG---AGCAG------------CA---------GCGCACCTCGC------TGCATCCGCAG----------------------------------CA------------GAT---CCACCA---------CC------------ACCACC------------AACAACAGCAGCAACAGCAG---------C---------------AGCAGCAGCAGCAGCAGCAG-----------C---AG---------------ATGCA------------GCA---------GCAGATGCA--------------ACA------ACAGCAGCAGC---------A--------------------------GCAACAGC---AGCAA---TCCT--CGAGAACGGSizeHit CountTotal NormTotal
No Reads
droEle1
GGTC-------GTAC-AGGGCCCTCGAGC------------TGC---CACAG------------T----------------------------------------------ATGCCAAGCAGGTGGCGCAG---CTACA---------------GCAGCAGCAGCA---------------ACAGCAGCAGC---------AACAGCAG------------CAG---CAG---CAGCAT---CAATCGCACCACCAGCAACAGCAGCAG-----------C---AGC------AGCAGGACCAGC-GCACCA-------------------------------------------C------TCTGCATCCGC---------A--------------------------GATCCACC---ACCACCA---------CCAACAGSizeHit CountTotal NormTotal
No Reads
droRho1
AGCA-------CCTACAGC-AACATCAGC------------AGC---AACAG---------CAGC---------------------------AGCAACAGCAG----------------------------------CAACATCAG---CAGCA------------------ACA---------GCAGC---------AGCAGCAACAG------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AAC------AGCAG---CA----------------CAACAGCAGCAGCCACAG--------CA------GCA------GCAGCAACTGC---------A--------------------------ACTGCAGC---AGCAACA---------GCAACTGSizeHit CountTotal NormTotal
No Reads
droBia1
AGTT-------GCAACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------GCAAC------A-------------------------------CGTGCAGCAGCAGCAACACCA---------------GCAGC------------------------AGCAGCATCAA------------CAG---------C---------------AGCAGCAGCAACAGCAGCAG-----------C---AA---------------CAGCA------------GCA---------GTTCCAG--CAGCAGCA------GCA------GCAGCATCTCC---------A--------------------------CCAGCAGC---AACAGGA---------TCAACTGSizeHit CountTotal NormTotal
No Reads
droTak1
GGGCCGTCTCAGCAACATC-AGCAGCAGC-------A--GCAGCAAAATATG---------CATCA------------------------TCACCAACAGCAG----------------------------------------------------------CA---------GC---AGCAC---CAACAAC------AGCAGCAGCAG------------------------CATATGCAAC------AGCAGCAGCAACACCAACAG-----------C---AG---------------CAGCA------------ACA---------ACATCAA--CAGCAGCAGCA---GCA------ACATCAACAGC---------A--------------------------GCAGCAGC---AGCATCA---------ACAACAGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCA-------GCAGCAGC-AGCAACAGA------------ATA---TGCAT------------CA------------------------TCATCAACAGCAG-------------------------------CAGCAGCATCAACAACAACA------------------------------------GCAGC---AGCAGCAG---------------------------CATATGC---------AACAGCATCAGCAGCAGCAT-----------C---AAC------AGCAG---CAGCA------------TCA---------ACAGCAACA--------------TCA------ACAGCAACAGC---------A--------------------------TCAACAGC---AGCAGCA---------ACAACATSizeHit CountTotal NormTotal
No Reads
dm3
AGGA-------GCCACAGC-AGA-TATGC----AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGCAACAACAG-------------------------------------CAGCAGCAGCAACA------------------------------------ACAGC---AGCAGCAACAA------------CAG---------C---------------AGCAGCAGCAACAACAGCAG-----------CAACAAC---------AG---CAGCA------------GCAACAGCAGCAGCAGCAG--CA------------ACA------CCAGGAGTTGT---------A--------------------------CCGCCAGC---AGCAGCT---------ACATC-GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................AGCAGCAG--CA------------ACA------CCAGGAGTTGT---------.............................................................2412.0020000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGG---------ATGC---------------------------AGCAACAACAG-------------------------------------CAGCA..........................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGC----AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGC............................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................C---------------------------AGCAACAACAG-------------------------------------CAGCAGCAG......................................................................................................................................................................................................................................................................................................21201.3026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000100000000000000100000000001000000000001000000010000
..................................GCG--ATACGTCCAGAGG---------ATGC---------------------------A..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GAGG---------ATGC---------------------------AGCAACAACAG-------------------------------------CAGC...........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GA-TATGC----AGCG--ATACGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................TCCAGAGG---------ATGC---------------------------AGCAACAACAG-------------------------------------CAGCA..........................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................C----AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGCA...........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGC............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AGCAGCAG--CA------------ACA------CCAGGAGTTGT---------A--------------------------CC................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CCACAGC-AGA-TATGC----AGCG--ATACGTC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TGC----AGCG--ATACGTCCAGAGG---------ATGC---------------------------AGCA...........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TGC----AGCG--ATACGTCCAGAGG---------ATGC---------------------------A..............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATACGTCCAGAGG---------ATGC---------------------------AGCAACAAC......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................GC-AGA-TATGC----AGCG--ATACGTCCAGAGG---------A.............................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CCAGAGG---------ATGC---------------------------AGCAACAAC......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................CAGCAACAA------------CAG---------C---------------AGCAGCAG..........................................................................................................................................................................................21200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000003006000
..............................................................TGC---------------------------AGCAACAACAG-------------------------------------CAGCAGCAGCAA...................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCAG-----------CAACAAC---------AG---CAGCA------------GCAACAG......................................................................................................................25150.4770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AG---------C---------------AGCAGCAGCAACAACAGCAG-----------CAAC...............................................................................................................................................................2790.4440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAG---------C---------------AGCAGCAGCAACAACAGC................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
....................................................................................................CAG-------------------------------------CAGCAGCAGCAACA------------------------------------ACAGC---.....................................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...............................................................GC---------------------------AGCAACAACAG-------------------------------------CAGCAGC........................................................................................................................................................................................................................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000
..................................................................................................AACAG-------------------------------------CAGCAGCAGCAACA------------------------------------AC...........................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................CA------------------------------------ACAGC---AGCAGCAACAA------------CAG---------C---------------..................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..............................................................................................................................................................................................ACAGC---AGCAGCAACAA------------CAG---------C---------------A.................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACAGC---AGCAGCAACAA------------CAG---------C---------------AGC...............................................................................................................................................................................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GCAACAACAG-------------------------------------CAGCAGCAGCAACA------------------------------------.............................................................................................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AGCAACAACAG-------------------------------------CAGCAGCAGC.....................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CAGCAACAA------------CAG---------C---------------AGCAGCA...........................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................GCAACAA------------CAG---------C---------------AGCAGCAGCAACA.....................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................G---------C---------------AGCAGCAGCAACAACAGCAG-----------CAACAA.............................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................C---------------------------AGCAACAACAG-------------------------------------CAGCAGC........................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AGCAGCAACAA------------CAG---------C---------------AGCAGCA...........................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAGCA------------GCAACAGCAGCAGCAGCAG--........................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AC---------AG---CAGCA------------GCAACAGCAGCAGCA..............................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................G-----------CAACAAC---------AG---CAGCA------------GCAACAG......................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CAAC---------AG---CAGCA------------GCAACAG......................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................AACAACAG-------------------------------------CAGCAGCAGCAA...................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AGCAGCAGCAACA------------------------------------ACAGC---.....................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CAACAA------------CAG---------C---------------AGCAGCAGCAACA.....................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droSim2
ATCA-------ACAACAGC-AGCAACATC------------TTC---ATGCT------------------------------------------------------------CAGCA-GCTCT----TGGCCCAGA--------G------TCAGTTGCAGCAGCA---------------ACAGCAACAGC------------------------------AGCAGCAGCAGC---AAC---------ACCACCA---GCAGCAACAG-----------C---AG-----------------GCA------------GCA---------GCCGCCG--CAGCAGCTGG-TGT------------------GC---ATGGCCAGCATGGGGGACACGTGA---------CG---------CACGCCG---------ACATCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................TGCAGCAGCA---------------ACAGCAAC..............................................................................................................................................................................................................................................................18204.80960000247200000000000
............................................................................................................................................................TGCAGCAGCA---------------ACAGCAACAG............................................................................................................................................................................................................................................................20133.08400000103000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGGACACGTGA---------CG---------CACGCC.................2312.00200200000000000000
......................................................................................................................................................................................................................................CAGC---AAC---------ACCACCA---GCAG....................................................................................................................................................................................1881.00800000800000000000
..................................................................................................................................CCCAGA--------G------TCAGTTGCAGCA........................................................................................................................................................................................................................................................................................1911.00100000000000100000
......................................................................................................................GCTCT----TGGCCCAGA--------G------TCA.................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGGGACACGTGA---------CG---------CACGCCG---------ACA....2411.00101000000000000000
.....................................................................................................................................AGA--------G------TCAGTTGCAGCA........................................................................................................................................................................................................................................................................................1620.50100000010000000000
.................................................................................................................................................................................................................................AGCAGCAGC---AAC---------ACCACCA---GCAGCAA.................................................................................................................................................................................2620.50100000000000010000
............................................................................................................................................................................................................................................................ACCA---GCAGCAACAG-----------C---A..............................................................................................................................................................16200.05100000000001000000
.....................................................................................................................................................................A---------------ACAGCAACAGC------------------------------AGCAGCA......................................................................................................................................................................................................................19200.05100000000001000000
droSec2
AGGC-------CGTGGAGC-AACAGCAGA------------TGC---AGCAG------CAGCTGCA---------CTACGATTCGCACCAGGAGCTGCAGTT-------------------------------CGAGCAGCATCAGCCGCACCA---------------GTCGC------------------------ATCAGCAACAT------------CAG---------C---------------AGCAGCAGCTGCAGCATCAG-----------C---AG---------------CAGCA------------GCA---------GCTGCAG-----------------CA------TCAGCAGCAGC---------A--------------------------GCAACATCAGCAGCAACA---------AAATCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................AGCAGA------------TGC---AGCAG------CAGCT............................................................................................................................................................................................................................................................................................................................................................................................1921.0020020
.....................ACAGCAGA------------TGC---AGCAG------CA...............................................................................................................................................................................................................................................................................................................................................................................................1860.1710010
...................................................................................................................................................................................................................................................................GCAGCATCAG-----------C---AG---------------CAGCA------------GCA---------GC...............................................................................................................23100.1010010
...................................................................................................................................................................................................................................................................................................................................................................................GC---------A--------------------------GCAACATCAGCAGCAAC.................20130.0810010
droYak3
AGCA-------GCAACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------GCAGCAGCAGCAG----------------------------------CAGCAACAG---CAGCA---------------------------------ACAAC------AGCAGCAGCAG------C------AA---------C---------------AGCAGCAGCAGCAGCAGCAGCAGCAG-----C---AG---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAGCAGC---AGCAGCA---------ACAACAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................C---------------AGCAGCAGCAGCAGCAGCAGCAGCAG-----C---...............................................................................................................................................................28200.7515000000000015
......................CAGCAGC------------AGC---AGCAG------------CA------------------------GCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................28200.7515000000000015
...............................................................................................................................................................................................................................................................................................................................CA---------GCAGCAGCA--------------GCA------ACAGCAGCAGC---------.............................................................25200.30600000000006
.............................................................................................................................................................................................................GCAG------C------AA---------C---------------AGCAGCAGCAGCAGCA..................................................................................................................................................................................24200.10202000000000
.....................................................................................................AG----------------------------------CAGCAACAG---CAGCA---------------------------------ACAAC------AGCAGC...............................................................................................................................................................................................................................................27150.07100100000000
......................................................................................................................................................AGCA---------------------------------ACAAC------AGCAGCAGCAG------C------AA---------C---------------AGC...............................................................................................................................................................................................27170.06100100000000
...................................................G------------CA------------------------GCAGCAGCAGCAG----------------------------------CAGCAAC...........................................................................................................................................................................................................................................................................................................23200.05101000000000
................................................................................................................................................................................................................................................................................................................................................GCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAGCA............................24200.05100000010000
.............AACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------G................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..........................................................................................................................................................................................................GCAGCAG------C------AA---------C---------------AGCAGCAG..........................................................................................................................................................................................19200.05101000000000
.................................................................................................................................................................................................................................................................................................................A------------GCA---------GCAGCAGCA--------------GCA------ACAGCAGCA........................................................................25200.05101000000000
.............................................................................................................................................AACAG---CAGCA---------------------------------ACAAC------AGCAGCAGC............................................................................................................................................................................................................................................24200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------A--------------------------GCAGCAGC---AGCAGCA---------AC.....23200.05101000000000
................................................................................................................................................................................................................................................................................................................................................GCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAGC.............................23200.05101000000000
............................................................................................AGCAGCAGCAG----------------------------------CAGCAACAG---CAGCA---------------------------------................................................................................................................................................................................................................................................................25200.05101000000000
.............................................................................................................................................................................................................................................................................................G---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------ACAGC............................................................................26200.05101000000000
AGCA-------GCAACAGC-AACAGCAGC------------..................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
..............................................................................................................................................................................................AC------AGCAGCAGCAG------C------AA---------C---------------AGCAGCA...........................................................................................................................................................................................24200.05101000000000
...................................................G------------CA------------------------GCAGCAGCAGCAG----------------------------------CAGCAACAG---C.....................................................................................................................................................................................................................................................................................................26200.05101000000000
..............ACAGC-AACAGCAGC------------AGC---AGC.........................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
...........GCAACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------.................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..............ACAGC-AACAGCAGC------------AGC---AGCAG------------CA------------------------.................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.............................................................................................................................................................................................................................................................................................G---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------AC...............................................................................23200.05101000000000
droEre2
ATGACG-----ACAACAAT-AA-----GCAAGCAGGAGC--AGC---AGCAGCAGCAGCAGCAGC------------------------------------AG----------------------------------CAGCAACAG---CAGCA------------------------------------ACAGCAGCAGCAGCAACAG------------CAG---------C------------------AGCAGCAACAGCAGCAG-----------C---AG---------------CAGCA------------GCA---------GCAGCAGCA--------------GCA------ACAGCAGCAGC---------A--------------------------GCAACAGC---AGCAGCA---------ACAGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................AG-----------C---AG---------------CAGCA------------GCA---------GCAGCA...........................................................................................................19200.2550000050
.............................AAGCAGGAGC--AGC---AGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................1890.1111000000
..................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAGC---------A--------------------------GCAACAGC---.......................22200.1020101000
................................................................................................................................................................................................AGCAGCAGCAGCAACAG------------CAG---------C------------------A..............................................................................................................................................................................................22200.0510000100
..........................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---------A--------------------------GCAACAGC---A......................21200.0511000000
..............................................................................................................................................................................................................................................................................................................................................................................................A--------------------------GCAACAGC---AGCAGCA---------ACA....19200.0510001000
..................................GGAGC--AGC---AGCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000
...............................................................................................................................................................................................................AG------------CAG---------C------------------AGCAGCAACAGCAGCA...............................................................................................................................................................................22200.0510000100
...............................................................................................................................................................................................CAGCAGCAGCAGCAACAG------------C.............................................................................................................................................................................................................................19200.0510000010
......................................................................................................G----------------------------------CAGCAACAG---CAGCA------------------------------------ACAGCAGCAGC..................................................................................................................................................................................................................................................26200.0510100000
........................................................................................................................................................CA------------------------------------ACAGCAGCAGCAGCAACAG------------CA............................................................................................................................................................................................................................23200.0510000010
.................................................................................................................................................G---CAGCA------------------------------------ACAGCAGCAGCAGCAA.............................................................................................................................................................................................................................................22200.0511000000
...............................................................................................................................................................................................................................................................................................................................................AGCA--------------GCA------ACAGCAGCAGC---------A--------------------------G.................................20200.0510001000
........................................................................................................................................................................................................................................................................................C---AG---------------CAGCA------------GCA---------GCAGCAGCA--------------G.........................................................................................21200.0510000010
.....................................................................................................................................................CAGCA------------------------------------ACAGCAGCAGCAGCAAC............................................................................................................................................................................................................................................22200.0510100000
............................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------A--------------------------GCAACAGC---AGCA...................22200.0510000100
...............................................................GC------------------------------------AG----------------------------------CAGCAACAG---CAGCA------------------------------------.............................................................................................................................................................................................................................................................18200.0511000000
.................................................CAGCAGCAGCAGCAGC------------------------------------AG----------------------------------C.................................................................................................................................................................................................................................................................................................................19200.0511000000
......................................................................................................G----------------------------------CAGCAACAG---CAGCA------------------------------------ACAGCAGCA....................................................................................................................................................................................................................................................24200.0510000100
...............................................................................................................................................................................................................................................................AGCAACAGCAGCAG-----------C---AG---------------CAGCA------------GCA---------.................................................................................................................25200.0510000010
..................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAGC---------A--------------------------GCAACAGC---A......................23200.0510000010
...........................................................................................................................................................................................................CAACAG------------CAG---------C------------------AGCAGCAACAGCA..................................................................................................................................................................................23200.0510000010
..............................................................................................................................................................................................................CAG------------CAG---------C------------------AGCAGCAACAGC...................................................................................................................................................................................19200.0510000010
....................................................................................................................................................................................................GCAGCAGCAACAG------------CAG---------C------------------AGCA...........................................................................................................................................................................................21200.0510001000
.....................................................................................................AG----------------------------------CAGCAACAG---CAGCA------------------------------------ACAGCAGCAG...................................................................................................................................................................................................................................................26200.0511000000
.......................................................................................................................................................GCA------------------------------------ACAGCAGCAGCAGCAACA...........................................................................................................................................................................................................................................21200.0510000010
....................................................................................................................................................................................................GCAGCAGCAACAG------------CAG---------C------------------AGC............................................................................................................................................................................................20200.0511000000
...........................................................AGCAGC------------------------------------AG----------------------------------CAGCAACAG---CAGC..................................................................................................................................................................................................................................................................................................21200.0510001000
.............................................................................................................................................................................................................................................................................................................................................GCAGCA--------------GCA------ACAGCAGCAGC---------.............................................................20200.0510000010

Generated: 05/17/2015 at 10:48 PM