ID:

dmo_648

 Coordinate:

scaffold_6473:2936213-2936363 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.0 -20.0 -19.9

Flybase annnotation

CDS [Dmoj\GI15169-cds]; exon [dmoj_GLEANR_15930:2]; intron [Dmoj\GI15169-in]; intron [Dmoj\GI15169-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
  1. scaffold_6359:1676269-1676292 +
  2. dmo_648  scaffold_6473:2936244-2936267 -
  3. dmo_660  scaffold_6473:3332121-3332144 +
  4. scaffold_6473:9293674-9293697 +
  5. scaffold_6473:14073517-14073540 -
  6. scaffold_6496:2069204-2069227 -
  7. scaffold_6496:3513608-3513631 -
  8. scaffold_6496:6519762-6519785 +
  9. scaffold_6496:8775144-8775167 -
  10. scaffold_6496:11366864-11366887 -
  11. scaffold_6540:5250404-5250427 +
  12. scaffold_6540:18144793-18144816 +
  13. scaffold_6540:27770909-27770932 +
  14. scaffold_6680:1473042-1473065 -
  15. scaffold_6680:3063568-3063591 -
  16. scaffold_6680:4168859-4168882 -
  17. scaffold_6680:13279237-13279260 +
star

Sense Strand Reads

-------------------------------------------#######---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGATCTTTGGCTAATCCCTTCCAAAATTTCTTTTCATTTGCAGAACGAAGGTGCGGGCAATCGAAACAATTTGAATAATGCGGGTAACGCGGGACGCAAGACAACTAACCGATTTAACAACCATAATAACAATCAGCAGCCGCAGCAACAGCAGCAGCAGCAGCATCAGCATCAGCAGCAAAAGCAACAACAACAAACAGCAAAACAACAACACCAACAGCACAACAATGCGTCCTCCAAGAATTGCCTGG
**************************************************.(((..(((((((......((((.....((((.....)))).....)))).........))))).....................((.((.((.((....)).)).)).)).((....))....)).))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
....................................................................................................................................................................................AAACCTACAACAACAAACAGC.................................................. 21 2 15 1.67 25 25 0 0
...................................................................................................................................................................................AAAACCTACAACAACAAACAGC.................................................. 22 2 9 1.22 11 11 0 0
..........................................GAACGAAGGTGCGGGCAATCG............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0
................................................................................................................................................................................................ACAAACAGCAAAACAACAACACCAAC................................. 26 0 1 1.00 1 0 0 1
........................................GAGAACGAAGGTGCGGGCAATCG............................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0
.....................................................................................................................................................................................AACCTACAACAACAAACAGCGAAA.............................................. 24 3 9 0.56 5 2 3 0
...................................................................................................................................................................................AAAACCTACAACGACAAACAGC.................................................. 22 3 20 0.10 2 2 0 0
..................................................................................................................................................AACAGCAGCAGCAGCAGCATCAGC................................................................................. 24 0 17 0.06 1 1 0 0
..........................................................................................................................................GCCGCAGCAACAGCAGCAGC............................................................................................. 20 0 20 0.05 1 1 0 0

Anti-sense strand reads

TCTAGAAACCGATTAGGGAAGGTTTTAAAGAAAAGTAAACGTCTTGCTTCCACGCCCGTTAGCTTTGTTAAACTTATTACGCCCATTGCGCCCTGCGTTCTGTTGATTGGCTAAATTGTTGGTATTATTGTTAGTCGTCGGCGTCGTTGTCGTCGTCGTCGTCGTAGTCGTAGTCGTCGTTTTCGTTGTTGTTGTTTGTCGTTTTGTTGTTGTGGTTGTCGTGTTGTTACGCAGGAGGTTCTTAACGGACC
**************************************************.(((..(((((((......((((.....((((.....)))).....)))).........))))).....................((.((.((.((....)).)).)).)).((....))....)).))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 V056
head
......................................................................................TGCGGCCCGCGTTCTGTTGAT................................................................................................................................................ 21 2 1 1.00 1 0 0 1 0
....................................................................................................................................................................................TTTGGATGTTGTTGTTTGTCG.................................................. 21 2 15 1.00 15 6 7 1 1
.....................................................................................................................................................................................TTGGATGTTGTTGTTTGTCGCTTT.............................................. 24 3 9 0.89 8 5 3 0 0
.................................................................................................................................................................................................GTTTGTCGTTTTGTTGTTGT...................................... 20 0 2 0.50 1 0 1 0 0
....................................................................................................................................................................................TTTGGATGTTGTTGTTTGTCGCTTT.............................................. 25 3 5 0.40 2 2 0 0 0
...................................................................................................................................................................................TTTTGGATGTTGTTGTTTGTCGCTTT.............................................. 26 3 5 0.20 1 1 0 0 0
...................................................................................................................................................................................TTTTGGATGTTGTTGTTTGTCG.................................................. 22 2 9 0.11 1 1 0 0 0
...............GTGAAGGTCTTAAAGAAA.......................................................................................................................................................................................................................... 18 2 11 0.09 1 0 1 0 0
......................................................................................................................................................................................TGGATGTTGCTGTTTGTCGTTTT.............................................. 23 3 11 0.09 1 0 1 0 0
...................................................................................................................................................................................TTTTGGATGTTGTTTTTTGTCG.................................................. 22 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:2936163-2936413 - dmo_648 AGAT----CTTTGGCTAAT------------------C---------CCTTCCA--------AAATTTCT--TTTCATTTGCAGAACGAAG-GTGCGGGCAATCGA---------------------------------------------------------------------------------------AACAATTTGAAT----AATGCGGGT-A---ACGCG------------------GG-ACGCAAGACAACTAAC-----------------------------------------------------------CGATTTAACAAC---CATAA---------------------------T---AACAATCAGCAGCC---GCAGCAA---------------------CAG---------------CAG----------------------CAG---------CAGCAGCATCAGCATC----AGCAGCA---------AAAGC---------AA---CA---AC---AACA------AA-----CA---GC-AAA------AC---------------AA---------C---------AACAC-------CAACAGCAC-------------------AACAATGCGTCCTCCAAGAATTGC-CTGG
droVir3 scaffold_12932:1672968-1673188 + AAAT---GCT------AAT------------------TCGTGCGTCTCCTTCTA--------TTACTTCTAATTCCATTTGCAGAACGAAG-GTGCGATCAATCGA---------------------------------------------------------------------------------------AACAATTTGAA-------TTCGGGT-A---ACCTG------------------GG-CCGCAAGACAACTAAT-----------------------------------------------------------CGTTTTA---GC---CACACTAACAAC------C------------------ACA-AC------------AACA---------------ACAACAGCAG---------------CAGCAA---T---------------CAG---------CAG-------------C---------A------------------------ACAACA---ACAGAAAC------------------------------------AGC---------------------------------AC-------AA-CA----ACAACA-----------------ACGCGTCCTCCAGAAGTTGC-CTGG
droGri2 scaffold_14853:1374423-1374693 + dgr_142 ACAA----TTCTAATCAATCCCATTCTCAAT-----------------------------------------------TTGCAGAACGAAG-GTGCGACCAATCGA--T--CCAATCTTTACAATCAA-----------------------------------------------------------------------TTGAA-------TTCGGGT-A---ACGCTGCTGCTGCTGGTGGTGGTGG-ACGCAAGTCAACTAAC-----------------------------------------------------------CGCTTTAACAGC---TCCACTAACAAC------AACAACC------------ACA-AC------------AACA---------------ACAATAGCAA---------------CAACAGCAATCAAAAGCAACAACAGCAG---------CAG-------------C---------A------------------------ACAACA---ACAGCAACA------------------GC-A-----GCAAC------------AT-AA-------------------------------TAGCA----ACAACA-----------------TTTCGTCCTCCAGATCTGGC-CTGG
droWil2 scf2_1100000003252:4655-4835 - GCAA----CAGCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGCAGCAGCAA---CAGGAACAA-CTGCAGCAGCAACAATATCAACAGCAACAGCAAC------AA---------------CAG-------CAG------------GAG---------CAAC----------------------------------------AATATCAACAGCA---------ACAGCAACAACAGCA------GC-A-----GCAAC---AGC---------AA-------------------------------CAACA----ACAACT-----------------GCTCGAATGCCAAGAGTGCCCATGG
dp5 XR_group6:9122317-9122519 + AGTA-------------------------------------------------------------------------------------------------------------------------------------TCTATTGGAGATGATTCCGCCGCAGCAGCAGAGC-GGAGCCAGCGGCAGTCGCCAGAACAACTGGAAGGCCTAAGG-------CCA--G--------------------------------A----------------------------------AAAACC--CCAGCAAC---------------------------------GCCAACAAC------AAC------------------AG-CAACAGCAGCAGCAACAACAAC------------------AA---------------CAACAGGAA-CAAC---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAACAACA------------------GC-A-----AAAAC---AAC---------AACAG------CAA-------------------CAACA---------------------------AC-----------------------
droPer2 scaffold_35:600843-601025 - AGTA-------------------------------------------------------------------------------------------------------------------------------------TCTATTGGAGATGATTCCGCCGCAGCAGCAGAGC-GGAGCCAGCGGCAGTCGCCAGAACAATTGGAAGGCCTAAGG-------CCA--G--------------------------------A----------------------------------AAA--------ACCCCAGC---------------------------AATGCCAACAAC------AAC------------------A-------------GGAACAA---------------CAACAGCAG---------------CAGCAACAA-CA------------ACAA---------C-------------------AGC------------------------------AACA---------ACAGCAACAACAGCAACA---------------ACAACAGCAA------------------CAA-------------------C-------------------------------------------------------A
droAna3 scaffold_13335:501268-501432 - AAAT---ACTTT------------------------------------------GAGG---------------------------ACG--------------------------------------------------------------------------------AGC-AGCGCGAGGCG------------------------------------------------------------------------------------------------------------------GA--CTTGCAGCAG---------------------CACC------TCCAGCAGC------AGCAGCAGCA---------ACA-GC------------AACA---------------GCAGCAGCAA---------------CAACAGCAG-CAGCAGCAGCAACAGCAG---------CAG-------------C---------A------------------------GCAACA---ACAGCAGCAGCAGCAACAGCAACG-----C-GA-----------TGCAG------------------CAA-------------------AAG-A-------------------A-------T----------------------TG
droBip1 scf7180000396696:780112-780315 + GCAG--------------------------------------------------------------------------------TACAAGC-GGGAGAACACCTGG---------------------------------------------------------------------------------------AGCACGCTGGCC----AGTGCGGGC-A---T-----------------------G-AACCGGCGCAACC------------------------------AGCAGAA-----CCAGCAGC------------CGG------ATCAGCCACACCAGCCCAATCAGATCC------------------CA-CACCAGCAACAGCAACAACAACAGCAG------------CAGCAACAACAA------CAG----------------------CAG---------CAG-------------C---------A------------AC---------AA---CAACAAC---AGCAGCA------------------------GCAGC---AGC---------AACCA---CAACAA-------------------CAACA---------------------------G----------------------CA
droKik1 scf7180000302469:903932-904135 - TTTT----C------------TTATTTT--------------------------GAGA---------------------------ACGAGAA----CGA----G--AAAGAAAT--------------A-----------------------------------AGGGAGTGAGAGCAATTCAC--------------------------------GCGA---GCGCA------------------GGCGCGCAGTTCAATTAACTTAATTGCCATGTAA------------------------------T---------------------TACG------CGCAACAGC------AGCAGCA------------GCA-GC------------AG------------------------CAGCAACAATAA------CAATAACAG-CAACAGCTACAAGAGCAA---------C-------------------------------------------ATT---AA---CA---ACAATAA---------------CAGCATC-A-----GCAAC------------A------------------------------------AGCA-------------------ATA-----A-----------------------T
droFic1 scf7180000454077:1887479-1887685 - ACGT----TCATGGCACCA------------------C---------CACGCCG--------AA--------------------AACGGAG--------TACTC--CACGGCCATCTCGAGCG----------------------------------------------------------GG------------CAATTGCA----------------------GCA------------------GGC-----------------------------CTTCGCCGAACTGCAGCTGCACTCGAGCAACAAT---------------------------AATGCCA---------------------------------CACAGCAGCA---GCAGCAT---------------------CTG---------------CAG----------------------CAG---------CAGCAGCAGCAGCAAC----AGCAGCA---------ACAGC---------AA---CA---TT---TACT------TT-------------TAA---GCAAC---AAC---------AATAA----------------------------TAGCAATAA-------------------TT--C----------------------AA
droEle1 scf7180000490564:483408-483606 + AA---TCGCTGCT--AAATTCTTATCTGTATCAGAAA-----------------GAAGGCGATC---------------------------C----CAG----C--AATTATAT--------------G-----------------------------------TCGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AGCA--------GCATCAGC---------------------------AACACCAACAGC------AGCAGCAACAC-------------------CAACACCAGC------------------------AA---------------CAGCAGCAG-CAACACC-------------------------------------------------------------------------AACA---TCAACAGCAGCAGCAACAGCAACA-----C-CATCAGCAAC------------ATAAACAGCTCCAGCAA-------------------CA------------------------------G----------------------TG
droRho1 scf7180000768296:3801-3995 + ACAAATG--------------------------------------------------G-----T---------------------------C----GGG----C--AATTGCAA--------------G-----------------------------------GTGGA-C-AG-GCTGCTGG----------------------------------------------------------------------------------------------------------------------CCAGCAACAGCAACAGCAACAAGCGACT---------------------C------AGCAACAGCAA---CAGCAACTC-TCAA------------------------------------------------------GGCAGCAG-CAACAGCAACAGCAGCAG---------CAG-------------C---------A------------------------GCAGCA---GCAGCAGCAGCAGCAACTGCAACA-----C-AA---------GCAGCAA------------------CAG------GAC-ATCCTGTATCAGCAACAT-------------------AACGAGG---------------------C
droBia1 scf7180000300910:229172-229382 - TGC-------------------------------------------------------------------------------AGAACGAGATGTGCG----------AGTTCAG--------------GAAACAGGAGCTG-----------------------------C-TGGGCATCATGC------------------------------------------------------------------------------------------------------------AGGA--------GCAGCAGC---------AGGCGA-----C-AC------ACCTGCATC------TGAAGCAGCAGCGGCATCTGCA----GCA------GCAGCAA---------------------CAG------CAGCAGCAGCAGCAGCAA-CAACAACAGCAGCAGCAG---------CAG-------------C---------A------------------------------------------------ACAACAACA---------------GCAGCAGCAG------------------CAG-------------------CAGCA-------------------ACAGAACCCTG--CGCTCAGAAGGTCGC-C---
droTak1 scf7180000415773:655461-655649 + ATC----GCTGCA--AAAATTGGTTTTGTGC-----G-----------------CGCAGCAATA---------------------------A----CAA----C--AACTACGTAGA---------------------------------------------------TGT-GGCACTAAGCGA------------------------------------------------------------------------------------------------------------GGCG-----CCAC--CCAG-------------CCATCAT---------------ACAAC------AACAA---------C---AACACCGAATA------GCCGC----------------------------------------------------------AACAACAGCGC---------CAG-------------CAACAATAACA------------A---CGTG---CGGAGCA---ACAGCAGCAAAAGCAATCAGCAGA-----C----------A---------------AG---------CAG-------------------CGCCA---------------------------C----------------------CA
droEug1 scf7180000409711:1558955-1559169 + AA---TCGCTGCT--AAATTCTTATCTATATCAGAAA-----------------GAGGGCGATG---------------------------G----CAA----C--AACTACAT--------------G-----------------------------------TCAGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------------A--CCAGCAACAGC---------------------AAC------ACCAACAGC------AGCAACATCAACAAC---ATCAA-CAGCAGCAGCAACAACAACAGCAA---------------------------------CAC----------------------CAG-------------------------CAACAACATCA------------A---CATC---AGCAACA---ACAACAGCAGCA------------------------GCAAC------------ATAAGCAACTCCAGCAG-------------------CAGCA-------------------ACA-----------------------------A
dm3 chr3L:9701958-9702175 + GCGAATCCCTGCT--GAATTCATATCTTTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTATAT--------------G-----------------------------------GCGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AACAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCAGCAGCAGCATCAACAA-C---------------------------------------AA---------------CAGCAGCAG-CAACATCAAC------AG---------CAG-------------C---------AACATCAGCA---GC---------AGCAGCA---------ACACCAACAACAGCAACA---------------CCAACAGCAG------------------CAA-------------------CAGCA-------------------ACA-----------------------------G
droSim2 3l:9459873-9460096 + GCGAATCCCTGCT--GAATTCCTATCTCTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTATAT--------------G-----------------------------------ACGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AGCAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCAGCAG---CATCAACAG-C---------------------------------------AA---------------CAGCAGCAG-CAACAGCATCAGCAGCAG---------CAG-------------C---------A------GCA---GCAACATCAACAGCAGCA---------ACATCAACAGCAGCAACA---------------CCAACAGCAG------------------CAA-------------------CAGCA-------------------ACA-----------------------------G
droSec2 scaffold_0:1935788-1936013 + GCGAATCCCTGCT--GAATTCATATCTCTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTACAT--------------G-----------------------------------ACGGAGC-AGAGCTATTGGC------------------------------------------------------------------------------------------------------------AGCAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCATCA---------ACAG-C---------------------------------------AA---------------CAGCATCAG-CAAAATC---------AA---------C-------------------AGCAGCA---------------------------------------ACATCAGCATCAGCAACA---------------CCAACAGCAGCAACAGAAGCAGCTCCAGCAGCAGCAGCAG----------CATCAATGG-------------------AGCGGC---------------------AA
droYak3 X:19705207-19705432 - TC---------CT--GAATTTTGATTGTTTTTCGAGG-----------------C----------------------------------AG-GTGCGATTAAAC--GACGACAAAATTGTGCGGTTAA----------------------------------------------------AAAA-------------------A-------------------GTGCA------------------GGC-----------------------------TCACGCTCA------AGGG-----CAACTGGAG---------------------CAGT------TCGAGCAGC------AGGAACAGCA---------ACA-GC------------AGCA---------------GCAGCAGCAG---------------CAGCAGCAG-CATCTGCAT------CTGCATCTGCAGCAG-------------C---------A------------AC---------AGTTGCA---ACAGCAGCAGCAGCAACAACAACA-----C-----------------------------------------------------------TATCACCAC-------------------TACAGCG---------------------C
droEre2 scaffold_4770:11342829-11343045 + AGTG----CTTCGACGA---------------------------------------TGGCCACAGCACCGACTACCATGTGCTGACCTCAG-TGTC---CGATCTG---------------------------------------------------------------------------------------CATACGCT------------------------G--------------------------------AAGGACCCCAGTCCCTATGCCCTCGCCCA--------------CGAGCAAC---------------------------------TCCACCAGC------AGC------------------A-------------GCAGCAC---------------CAGCAGCAA---------------CTGCATCAC-CA------------GCAG---------C-------------------AGCAGCA------------AC---TTT---AC---CA---CCAGCAA---------------CA---------------GCAGCAGCAGC------AA---------C---------ATCAC-------CACCACCAC-----AACAATTCCACCA-----------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGAT----CTTTGGCTAAT------------------C---------CCTTCCA--------AAATTTCT--TTTCATTTGCAGAACGAAG-GTGCGGGCAATCGA---------------------------------------------------------------------------------------AACAATTTGAAT----AATGCGGGT-A---ACGCG------------------GG-ACGCAAGACAACTAAC-----------------------------------------------------------CGATTTAACAAC---CATAA---------------------------T---AACAATCAGCAGCC---GCAGCAA---------------------CAG---------------CAG----------------------CAG---------CAGCAGCATCAGCATC----AGCAGCA---------AAAGC---------AA---CA---AC---AACA------AA-----CA---GC-AAA------AC---------------AA---------C---------AACAC-------CAACAGCAC-------------------AACAATGCGTCCTCCAAGAATTGC-CTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................GAACGAAG-GTGCGGGCAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------AA-----CA---GC-AAA------AC---------------AA---------C---------AACAC-------CAAC.....................................................2611.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------CAG---------------CAG----------------------CAG---------CAGCAGCATCAGC.................................................................................................................................................................................................24170.061100000
..................................................................................................................................................................................................................................................................................................................................................................................................GCC---GCAGCAA---------------------CAG---------------CAG----------------------CAG---------C.............................................................................................................................................................................................................20200.051100000
droVir3
AAAT---GCT------AAT------------------TCGTGCGTCTCCTTCTA--------TTACTTCTAATTCCATTTGCAGAACGAAG-GTGCGATCAATCGA---------------------------------------------------------------------------------------AACAATTTGAA-------TTCGGGT-A---ACCTG------------------GG-CCGCAAGACAACTAAT-----------------------------------------------------------CGTTTTA---GC---CACACTAACAAC------C------------------ACA-AC------------AACA---------------ACAACAGCAG---------------CAGCAA---T---------------CAG---------CAG-------------C---------A------------------------ACAACA---ACAGAAAC------------------------------------AGC---------------------------------AC-------AA-CA----ACAACA-----------------ACGCGTCCTCCAGAAGTTGC-CTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................GTGCGATCAATCGA---------------------------------------------------------------------------------------AACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000001000000000100000000000
.................................................TTCTA--------TTACTTCTAATTCCATTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................C------------AACA---------------ACAACAGCAG---------------CAGC...............................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................C------------------ACA-AC------------AACA---------------ACAACAGCAG---------------CAGC...............................................................................................................................................................................................................................................24100.101001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T---------------CAG---------CAG-------------C---------A------------------------ACAACA---AC................................................................................................................................................18200.102000110000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CAAC------C------------------ACA-AC------------AACA---------------ACAACAGC....................................................................................................................................................................................................................................................................22150.071000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AC------------AACA---------------ACAACAGCAG---------------CAGCAA---T---------------..........................................................................................................................................................................................................................23160.061000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................C------------------ACA-AC------------AACA---------------ACAACAGCAG---------------CA.................................................................................................................................................................................................................................................22190.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................A-AC------------AACA---------------ACAACAGCAG---------------C..................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T---------------CAG---------CAG-------------C---------A------------------------ACAACA---ACA...............................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CA-AC------------AACA---------------ACAACAGCAG---------------CAGCAA---..........................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AC------C------------------ACA-AC------------AACA---------------ACAACAGCAG---------------G..................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................AACA---------------ACAACAGCAG---------------CAGCAA---..........................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ACAAC------C------------------ACA-AC------------AACA---------------ACAACA......................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
ACAA----TTCTAATCAATCCCATTCTCAAT-----------------------------------------------TTGCAGAACGAAG-GTGCGACCAATCGA--T--CCAATCTTTACAATCAA-----------------------------------------------------------------------TTGAA-------TTCGGGT-A---ACGCTGCTGCTGCTGGTGGTGGTGG-ACGCAAGTCAACTAAC-----------------------------------------------------------CGCTTTAACAGC---TCCACTAACAAC------AACAACC------------ACA-AC------------AACA---------------ACAATAGCAA---------------CAACAGCAATCAAAAGCAACAACAGCAG---------CAG-------------C---------A------------------------ACAACA---ACAGCAACA------------------GC-A-----GCAAC------------AT-AA-------------------------------TAGCA----ACAACA-----------------TTTCGTCCTCCAGATCTGGC-CTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------------C---------A------------------------ACAACA---ACAGCAAC..........................................................................................................................................19200.05110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAG---------CAG-------------C---------A------------------------ACAACA---..................................................................................................................................................21200.05101
.....................................................................................................................................................................................................................................................................................................................................................................AACAACC------------ACA-AC------------AACA---------------ACA.........................................................................................................................................................................................................................................................................19200.05110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------ACAACA---ACAGCAACA------------------GC-A-----GCAA..........................................................................................................23200.05110
.........................................................................................................................................................................................................................................................................................................................................................AACAAC------AACAACC------------ACA-AC------------A..............................................................................................................................................................................................................................................................................................19200.05110
.............................................................................................................................................................................................................................................................................................................................................................AC------AACAACC------------ACA-AC------------AACA---------------ACA.........................................................................................................................................................................................................................................................................21200.05110
droWil2
GCAA----CAGCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGCAGCAGCAA---CAGGAACAA-CTGCAGCAGCAACAATATCAACAGCAACAGCAAC------AA---------------CAG-------CAG------------GAG---------CAAC----------------------------------------AATATCAACAGCA---------ACAGCAACAACAGCA------GC-A-----GCAAC---AGC---------AA-------------------------------CAACA----ACAACT-----------------GCTCGAATGCCAAGAGTGCCCATGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------...................................................................................................................................................................................................................................................23200.6012012000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAA..................................................................................................................................23200.6012012000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAA...........................................................................................................................................................................................................................................................................................................................................23200.6012012000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------A...................................................................................................................................................................................................................................................................22200.45909000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACA...................................................................................................................................22200.45909000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGC.................................................................................................................................................................................................................................................................................................................................27200.25505000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACAGC..............................................................................................................................27200.25505000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------C..................................................................................................................................................................................................................................................24200.25505000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAAC.................................................................................................................................24200.25505000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------....................................................................................................................................................................................................................................................................................................................................24200.25505000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CAG-------C........................................................................................................................................................................................................................................27200.25505000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACAG...............................................................................................................................26200.20403010
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AG..................................................................................................................................................................................................................................................................................................................................26200.20403010
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CAG-------.........................................................................................................................................................................................................................................26200.20403010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AGC---------AA-------------------------------CAACA----ACAACT-----------------GCTCGAA..................2660.17101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACA................................................................................................................................25200.15303000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CA.................................................................................................................................................................................................................................................25200.15303000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACAGCA------G......................................................................................................................29190.11202000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGCAG...............................................................................................................................................................................................................................................................................................................................29190.11202000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CAG-------CAG------------..........................................................................................................................................................................................................................29190.11202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AATATCAACAGCA---------ACAGCAA.....................................................................................................................................23200.10201010
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAACAGCAA...........................................................................................................................................................................................................................................................................23200.10201010
...............................................................................................................................................................................................................................................................................................................ATCAACAGC---------------------AAC------AGCAACAAC------AGCA................................................................................................................................................................................................................................................................................................................................25200.10202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AATATCAACAGCA---------ACAGCAACA...................................................................................................................................25200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CAG-------CA.......................................................................................................................................................................................................................................28200.10202000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGCA................................................................................................................................................................................................................................................................................................................................28200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAACAGCAAC------A...................................................................................................................................................................................................................................................................25200.10202000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAAC.............................................................................................................................................................................................................................................................................................................................................21200.10202000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAGCAAC------AA---------------CAG-------CA.......................................................................................................................................................................................................................................25200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACAGCA------.......................................................................................................................28200.10202000
............AACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAA..............................................................................................................................................................................................................................................................................................................................................23200.10201010
...............................................................................................................................................................................................................................................................................................................ATCAACAGC---------------------AAC------AGCAACAAC------AG..................................................................................................................................................................................................................................................................................................................................23200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAAC....................................................................................................................................21200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA---------ACAGCAACAACAGCA------.......................................................................................................................25200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA---------ACAGCAACAACAG...............................................................................................................................23200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------....................................................................................................................................................................................................................................................................21200.10202000
..AA----CAGCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------............................................................................................................................................................................................................................................................................................................................................................21110.09101000
................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAATATCAACAGCAA.................................................................................................................................................................................................................................................................................24180.06101000
...............................................................................................................................................................................................................................................................................................................ATCAACAGC---------------------AAC------AGCAACAAC------AGCAGCAG............................................................................................................................................................................................................................................................................................................................29180.06101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA---------ACAGCAACAACAGCA------GC-A-----G.............................................................................................................29180.06101000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAGCAAC------AA---------------CAG-------CAG------------..........................................................................................................................................................................................................................27190.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCA---------ACAGCAACAACAGCA------G......................................................................................................................27190.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATATCAACAG....................................................................................................................................................................................................................................................................................20190.05101000
..............................................................................................................................................................................................................................................................................................................TATCAACAGC---------------------AAC------AGCAACAAC------AGCAG...............................................................................................................................................................................................................................................................................................................................27190.05101000
............AACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCA...............................................................................................................................................................................................................................................................................................................................................22200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACAGCAACAACAGCA------GC-A-----GC............................................................................................................25200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAACAGCA............................................................................................................................................................................................................................................................................22200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAT..................................................................................................................................23200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAATATCAACAGCAACAGC.............................................................................................................................................................................................................................................................................25200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AATATCAACAGCA---------ACAGCA......................................................................................................................................22200.05101000
...............AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGTT................................................................................................................................................................................................................................................................................................................................28200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCA---------ACAGCAACAACA................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCA---------ACAGCAACAACAGC..............................................................................................................................26200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------ACAGCAACAACAGCA------GC-A-----GCA...........................................................................................................29200.05100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA---------ACAGCAACAACA................................................................................................................................22200.05101000
........CAGCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGC................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAACAGCAAC------AA---------------...................................................................................................................................................................................................................................................26200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAATATCAACAGCAACAGCAAC------AA---------------...................................................................................................................................................................................................................................................27200.05101000
.............ACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACA............................................................................................................................................................................................................................................................................................................................................24200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------ACAGCAACAACAGCA------GC-A-----GCAAA---......................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................................................................................................AGCAACAAC------AGCAGCAGCAA---C.....................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAACAGCAACAGCAAC------AA---------------C..................................................................................................................................................................................................................................................25200.05101000
............AACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAA...........................................................................................................................................................................................................................................................................................................................................26200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAGCAACAACAGCA------GC-A-----GCAA..........................................................................................................23200.05101000
..............................................................................................................................................................................................................................................................................................................TATCAACAGC---------------------AAC------AGCAACAAC------A...................................................................................................................................................................................................................................................................................................................................23200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------GC-A-----GCAAC---AGC---------A.........................................................................................19200.05100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AATATCAACAGCA---------ACAGCAAC....................................................................................................................................24200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----------------------------------------AATATCAACAGCA---------ACAGCAA.....................................................................................................................................24200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GC-A-----GCAAC---AGC---------AA-------------------------------CAA......................................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAGCAAC------AA---------------CA.................................................................................................................................................................................................................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----------------------------------------AATATCAACAGCA---------ACAGCAACAA..................................................................................................................................27200.05101000
................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------....................................................................................................................................................................................................................................................................................................................................23200.05101000
....................................................................................................................................................................................................................................................................................................................CAGC---------------------AAC------AGCAACAAC------AGCAGCAGCAA---......................................................................................................................................................................................................................................................................................................................27200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAGCAACAACAGCA------GC-A-----GCA...........................................................................................................22200.05101000
.............................................................................................................................................................................................................................................................................................................................................AAC------AGCAACAAC------AGCAGCAGCAA---......................................................................................................................................................................................................................................................................................................................23200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACAGCAACAACAGCA------GC-A-----GCAA..........................................................................................................27200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAATATCAACAGCAACAGCAAC------....................................................................................................................................................................................................................................................................24200.05101000
...........CAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAA...........................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAATATCAACAGCAACAGCAA...........................................................................................................................................................................................................................................................................24200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCAACAGCAAC------AA---------------CAG-------TT.......................................................................................................................................................................................................................................28200.05101000
................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------AGC.................................................................................................................................................................................................................................................................................................................................26200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCA---------ACAGCAACAAC.................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAGCAAC------AA---------------CAG-------C........................................................................................................................................................................................................................................25200.05101000
.............................................................................................................................................................................................................................................................................................................................................AAC------AGCAACAAC------AGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................22200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCA---------ACAGCAACAACAGC..............................................................................................................................25200.05101000
..............................................................................................................................................................................................................................................................................................................................................AC------AGCAACAAC------AGCAGCAG............................................................................................................................................................................................................................................................................................................................19200.05100010
....................................................................................................................................................................................................................................................................................................................CAGC---------------------AAC------AGCAACAAC------AGCAGCAGC...........................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................ATCAACAGC---------------------AAC------AGCAACAAC------A...................................................................................................................................................................................................................................................................................................................................22200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------AATATCAACAGCA---------ACAGCAACAA..................................................................................................................................26200.05101000
..............CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACAGC---------------------AAC------AGCAACAAC------....................................................................................................................................................................................................................................................................................................................................25200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAACAGCA---------ACAGCAACAACAGTT------.......................................................................................................................28200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCAACAGCAACAGCAAC------AA---------------CA.................................................................................................................................................................................................................................................23200.05101000
.....................................................................................................................................................................................................................................................................................................................AGC---------------------AAC------AGCAACAAC------AGCAGCAGCAA---A.....................................................................................................................................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................................................................................................................................................................TATCAACAGC---------------------AAC------AGCAACAAC------AGC.................................................................................................................................................................................................................................................................................................................................25200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAACAGCAAC------AA---------------CAG-------C........................................................................................................................................................................................................................................26200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCA------GC-A-----G.............................................................................................................19200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------AATATCAACAGCA---------ACAGCAACAAC.................................................................................................................................25200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACAGCAACAGCAAC------AA---------------C..................................................................................................................................................................................................................................................23200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCA------GC-A-----GCAAC---......................................................................................................21200.05100010
.................................................................................................................................................................................................................................................................................................................CAACAGC---------------------AAC------AGCAACAAC------AGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................29200.05100100
dp5
AGTA-------------------------------------------------------------------------------------------------------------------------------------TCTATTGGAGATGATTCCGCCGCAGCAGCAGAGC-GGAGCCAGCGGCAGTCGCCAGAACAACTGGAAGGCCTAAGG-------CCA--G--------------------------------A----------------------------------AAAACC--CCAGCAAC---------------------------------GCCAACAAC------AAC------------------AG-CAACAGCAGCAGCAACAACAAC------------------AA---------------CAACAGGAA-CAAC---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAACAACA------------------GC-A-----AAAAC---AAC---------AACAG------CAA-------------------CAACA---------------------------AC-----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------GC-A-----AAAAC---AAC---------AACAG------C..............................................................................2211.0010010000000
........................................................................................................................................................................AGC-GGAGCCAGCGGCAGTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---AC................................................................................................................................................21200.851701070000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAA-CAAC---AACAA---CAG---------CAA-------------C---------....................................................................................................................................................................................2040.2510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAAC.............................................................................................................................................24200.1530300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---A.................................................................................................................................................20200.1020002000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACA...............................................................................................................................................22200.1020000200000
...........................................................................................................................................................................................................................................................................................................................................................CAAC------AAC------------------AG-CAACAGCAGCAG................................................................................................................................................................................................................................................................................................21200.1020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAA..............................................................................................................................................23200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................CAACAAC------AAC------------------AG-CAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................................26110.0910000100000
...........................................................................................................................................................................................................................................................................................................................................................................................G-CAACAGCAGCAGCAACAACAAC------------------AA---------------...................................................................................................................................................................................................................................................25110.0910001000000
..............................................................................................................................................................................................................................................................................................................................................................C------AAC------------------AG-CAACAGCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................25110.0910000100000
........................................................................................................................................................................................................................................................................................................................................................CAACAAC------AAC------------------AG-CAACAGCAGCAG................................................................................................................................................................................................................................................................................................24150.0710100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CAAC---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---A.................................................................................................................................................26200.0510010000000
.............................................................................................................................................................................................................................................................................................................................................................AC------AAC------------------AG-CAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................................21200.0510000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---..................................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAAC------------------A...................................................................................................................................................................................................................................................................20200.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAACAAC------------------....................................................................................................................................................................................................................................................................21200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAACAAC------------------A...................................................................................................................................................................................................................................................................21200.0510000001000
.................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAAC------------------AA---------------CA.................................................................................................................................................................................................................................................22200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................CAAC------AAC------------------AG-CAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................22200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------------C---------A------------AC---------AA---CA---ACAACAAC..........................................................................................................................................19200.0510001000000
..............................................................................................................................................................................................................................................................................................................................................................C------AAC------------------AG-CAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................19200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................AC------------------AG-CAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................................18200.0510000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACA...............................................................................................................................................21200.0510001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---..................................................................................................................................................20200.0510000001000
..........................................................................................................................................................................................................................................................................................................................................................ACAAC------AAC------------------AG-CAACAGCAG...................................................................................................................................................................................................................................................................................................19200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---AC................................................................................................................................................22200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAACAAC------------------....................................................................................................................................................................................................................................................................20200.0510001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AAC---------AACAG------CAA-------------------CAACA---------------------------AC-----------------------19200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAACA............................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AACAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---A.................................................................................................................................................22200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AACAA---CAG---------CAA-------------C---------A------------AC---------A...........................................................................................................................................................19200.0510001000000
..........................................................................................................................................................................................................................................................................................................................................................ACAAC------AAC------------------AG-CAACAGCAGCA.................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACA...............................................................................................................................................20200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAG---------CAA-------------C---------A------------AC---------AA---CA---ACAA..............................................................................................................................................21200.0510010000000
.......................................................................................................................................................................................................................................................................................................................................................................C------------------AG-CAACAGCAGCAGCAACA...........................................................................................................................................................................................................................................................................................20200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................AC------AAC------------------AG-CAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................20200.0510010000000
droPer2
AGTA-------------------------------------------------------------------------------------------------------------------------------------TCTATTGGAGATGATTCCGCCGCAGCAGCAGAGC-GGAGCCAGCGGCAGTCGCCAGAACAATTGGAAGGCCTAAGG-------CCA--G--------------------------------A----------------------------------AAA--------ACCCCAGC---------------------------AATGCCAACAAC------AAC------------------A-------------GGAACAA---------------CAACAGCAG---------------CAGCAACAA-CA------------ACAA---------C-------------------AGC------------------------------AACA---------ACAGCAACAACAGCAACA---------------ACAACAGCAA------------------CAA-------------------C-------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................CAGAGC-GGAGCCAGCGGCAGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
...............................................................................................................................................................CAGCAGCAGAGC-GGAGCCAGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................AACAATTGGAAGGCCTAAGG-------CCA--G--------------------------------A----------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
.......................................................................................................................................................................GAGC-GGAGCCAGCGGCAGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA-CA------------ACAA---------C-------------------AGC------------------------------.........................................................................................................................................................19200.153300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---------------CAGCAACAA-CA------------ACAA---------C-------------------AGC------------------------------A........................................................................................................................................................26200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAA---------------CAACAGCAG---------------CAGCAAC............................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CAGCAACAA-CA------------ACAA---------C-------------------AGC------------------------------.........................................................................................................................................................22200.051100000
droAna3
AAAT---ACTTT------------------------------------------GAGG---------------------------ACG--------------------------------------------------------------------------------AGC-AGCGCGAGGCG------------------------------------------------------------------------------------------------------------------GA--CTTGCAGCAG---------------------CACC------TCCAGCAGC------AGCAGCAGCA---------ACA-GC------------AACA---------------GCAGCAGCAA---------------CAACAGCAG-CAGCAGCAGCAACAGCAG---------CAG-------------C---------A------------------------GCAACA---ACAGCAGCAGCAGCAACAGCAACG-----C-GA-----------TGCAG------------------CAA-------------------AAG-A-------------------A-------T----------------------TGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACG-----C-GA-----------TGCAG------------------C..............................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAACG-----.....................................................................................................................2170.292000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG---------CAG-------------C---------A------------------------GCAACA---ACAGC.............................................................................................................................................28120.172110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---------CAG-------------C---------A------------------------GCAACA---AC................................................................................................................................................21200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................................CA-GC------------AACA---------------GCAGCAGCAA---------------CAACA..............................................................................................................................................................................................................................................23200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG---------CAG-------------C---------A------------------------GCAACA---ACAGC.............................................................................................................................................27120.081010000
...........................................................................................................................................................................................................................................................................................................................................................................AGCA---------ACA-GC------------AACA---------------GCAGCAG.....................................................................................................................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-CAGCAGCAGCAACAGCAG---------CA............................................................................................................................................................................................................23200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------CAACAGCAG-CAGCAGCA.................................................................................................................................................................................................................................21200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGCAGCAGCAGCAACAGC..............................................................................................................................22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------------CAACAGCAG-CAGCAGC..................................................................................................................................................................................................................................19200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................C------------AACA---------------GCAGCAGCAA---------------CAACAGCAG-CA.......................................................................................................................................................................................................................................26200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG---------CAG-------------C---------A------------------------GCAAC......................................................................................................................................................19200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------CAG-------------C---------A------------------------GCAACA---ACAGC.............................................................................................................................................19200.051001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------C---------A------------------------GCAACA---ACAGCAGCAGCAGC....................................................................................................................................24200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------CAACAGCAG-CAGCAGCAGCAAC............................................................................................................................................................................................................................24200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCAGCAGCAA---------------CAACAGCAG-C........................................................................................................................................................................................................................................21200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------GCAACA---ACAGCAGCAGCAG.....................................................................................................................................20200.051010000
......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------ACA-GC------------AACA---------------GC..........................................................................................................................................................................................................................................................................20200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................AGCA---------ACA-GC------------AACA---------------GCAGCAGC....................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAG---------CAG-------------C---------A------------------------GCAACA---AC................................................................................................................................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---------------CAACAGCAG-CAGC.....................................................................................................................................................................................................................................19200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAG-------------C---------A------------------------GCAACA---ACAGCAGC..........................................................................................................................................21200.051001000
........................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------ACA-GC------------AACA---------------GCAGCAGC....................................................................................................................................................................................................................................................................24200.051010000
droBip1
GCAG--------------------------------------------------------------------------------TACAAGC-GGGAGAACACCTGG---------------------------------------------------------------------------------------AGCACGCTGGCC----AGTGCGGGC-A---T-----------------------G-AACCGGCGCAACC------------------------------AGCAGAA-----CCAGCAGC------------CGG------ATCAGCCACACCAGCCCAATCAGATCC------------------CA-CACCAGCAACAGCAACAACAACAGCAG------------CAGCAACAACAA------CAG----------------------CAG---------CAG-------------C---------A------------AC---------AA---CAACAAC---AGCAGCA------------------------GCAGC---AGC---------AACCA---CAACAA-------------------CAACA---------------------------G----------------------CASizeHit CountTotal NormTotal
No Reads
droKik1
TTTT----C------------TTATTTT--------------------------GAGA---------------------------ACGAGAA----CGA----G--AAAGAAAT--------------A-----------------------------------AGGGAGTGAGAGCAATTCAC--------------------------------GCGA---GCGCA------------------GGCGCGCAGTTCAATTAACTTAATTGCCATGTAA------------------------------T---------------------TACG------CGCAACAGC------AGCAGCA------------GCA-GC------------AG------------------------CAGCAACAATAA------CAATAACAG-CAACAGCTACAAGAGCAA---------C-------------------------------------------ATT---AA---CA---ACAATAA---------------CAGCATC-A-----GCAAC------------A------------------------------------AGCA-------------------ATA-----A-----------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
ACGT----TCATGGCACCA------------------C---------CACGCCG--------AA--------------------AACGGAG--------TACTC--CACGGCCATCTCGAGCG----------------------------------------------------------GG------------CAATTGCA----------------------GCA------------------GGC-----------------------------CTTCGCCGAACTGCAGCTGCACTCGAGCAACAAT---------------------------AATGCCA---------------------------------CACAGCAGCA---GCAGCAT---------------------CTG---------------CAG----------------------CAG---------CAGCAGCAGCAGCAAC----AGCAGCA---------ACAGC---------AA---CA---TT---TACT------TT-------------TAA---GCAAC---AAC---------AATAA----------------------------TAGCAATAA-------------------TT--C----------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
AA---TCGCTGCT--AAATTCTTATCTGTATCAGAAA-----------------GAAGGCGATC---------------------------C----CAG----C--AATTATAT--------------G-----------------------------------TCGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AGCA--------GCATCAGC---------------------------AACACCAACAGC------AGCAGCAACAC-------------------CAACACCAGC------------------------AA---------------CAGCAGCAG-CAACACC-------------------------------------------------------------------------AACA---TCAACAGCAGCAGCAACAGCAACA-----C-CATCAGCAAC------------ATAAACAGCTCCAGCAA-------------------CA------------------------------G----------------------TGSizeHit CountTotal NormTotal
No Reads
droRho1
ACAAATG--------------------------------------------------G-----T---------------------------C----GGG----C--AATTGCAA--------------G-----------------------------------GTGGA-C-AG-GCTGCTGG----------------------------------------------------------------------------------------------------------------------CCAGCAACAGCAACAGCAACAAGCGACT---------------------C------AGCAACAGCAA---CAGCAACTC-TCAA------------------------------------------------------GGCAGCAG-CAACAGCAACAGCAGCAG---------CAG-------------C---------A------------------------GCAGCA---GCAGCAGCAGCAGCAACTGCAACA-----C-AA---------GCAGCAA------------------CAG------GAC-ATCCTGTATCAGCAACAT-------------------AACGAGG---------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TGC-------------------------------------------------------------------------------AGAACGAGATGTGCG----------AGTTCAG--------------GAAACAGGAGCTG-----------------------------C-TGGGCATCATGC------------------------------------------------------------------------------------------------------------AGGA--------GCAGCAGC---------AGGCGA-----C-AC------ACCTGCATC------TGAAGCAGCAGCGGCATCTGCA----GCA------GCAGCAA---------------------CAG------CAGCAGCAGCAGCAGCAA-CAACAACAGCAGCAGCAG---------CAG-------------C---------A------------------------------------------------ACAACAACA---------------GCAGCAGCAG------------------CAG-------------------CAGCA-------------------ACAGAACCCTG--CGCTCAGAAGGTCGC-C---SizeHit CountTotal NormTotal
No Reads
droTak1
ATC----GCTGCA--AAAATTGGTTTTGTGC-----G-----------------CGCAGCAATA---------------------------A----CAA----C--AACTACGTAGA---------------------------------------------------TGT-GGCACTAAGCGA------------------------------------------------------------------------------------------------------------GGCG-----CCAC--CCAG-------------CCATCAT---------------ACAAC------AACAA---------C---AACACCGAATA------GCCGC----------------------------------------------------------AACAACAGCGC---------CAG-------------CAACAATAACA------------A---CGTG---CGGAGCA---ACAGCAGCAAAAGCAATCAGCAGA-----C----------A---------------AG---------CAG-------------------CGCCA---------------------------C----------------------CASizeHit CountTotal NormTotal
No Reads
droEug1
AA---TCGCTGCT--AAATTCTTATCTATATCAGAAA-----------------GAGGGCGATG---------------------------G----CAA----C--AACTACAT--------------G-----------------------------------TCAGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------------A--CCAGCAACAGC---------------------AAC------ACCAACAGC------AGCAACATCAACAAC---ATCAA-CAGCAGCAGCAACAACAACAGCAA---------------------------------CAC----------------------CAG-------------------------CAACAACATCA------------A---CATC---AGCAACA---ACAACAGCAGCA------------------------GCAAC------------ATAAGCAACTCCAGCAG-------------------CAGCA-------------------ACA-----------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
GCGAATCCCTGCT--GAATTCATATCTTTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTATAT--------------G-----------------------------------GCGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AACAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCAGCAGCAGCATCAACAA-C---------------------------------------AA---------------CAGCAGCAG-CAACATCAAC------AG---------CAG-------------C---------AACATCAGCA---GC---------AGCAGCA---------ACACCAACAACAGCAACA---------------CCAACAGCAG------------------CAA-------------------CAGCA-------------------ACA-----------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
GCGAATCCCTGCT--GAATTCCTATCTCTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTATAT--------------G-----------------------------------ACGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------AGCAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCAGCAG---CATCAACAG-C---------------------------------------AA---------------CAGCAGCAG-CAACAGCATCAGCAGCAG---------CAG-------------C---------A------GCA---GCAACATCAACAGCAGCA---------ACATCAACAGCAGCAACA---------------CCAACAGCAG------------------CAA-------------------CAGCA-------------------ACA-----------------------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................T--------------G-----------------------------------ACGGAGC-AGAGCTACTGGC------------------------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................TCTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.........TGCT--GAATTCCTATCTCTATCAAAAG-----------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAACAGCATCAGCAGCAG---------CA............................................................................................................................................................................................................2150.20100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---------CAG-------------C---------A------GCA---GC.....................................................................................................................................................................18200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................C------ACCAACAGC------AGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................20200.05110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AG-C---------------------------------------AA---------------CAGCAGCAG-CAACA....................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
GCGAATCCCTGCT--GAATTCATATCTCTATCAAAAG-----------------GATAGCGATG---------------------------C----CGG----C--AATTACAT--------------G-----------------------------------ACGGAGC-AGAGCTATTGGC------------------------------------------------------------------------------------------------------------AGCAGCA--CCAGCAACAT---------------------CACC------ACCAACAGC------AGCAGCATCA---------ACAG-C---------------------------------------AA---------------CAGCATCAG-CAAAATC---------AA---------C-------------------AGCAGCA---------------------------------------ACATCAGCATCAGCAACA---------------CCAACAGCAGCAACAGAAGCAGCTCCAGCAGCAGCAGCAG----------CATCAATGG-------------------AGCGGC---------------------AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------AGCAGCA--CCAGCAACAT---------------------CAC..........................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATC---------AA---------C-------------------AGCAGCA---------------------------------------ACAT........................................................................................................................................2111.0011000
..............................TCAAAAG-----------------GATAGCGATG---------------------------C----CGG----..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...................................................................................................................................................................................................................................................................................................................ACAT---------------------CACC------ACCAACAGC------AGC.................................................................................................................................................................................................................................................................................................................................2020.5010010
.....................................................................................................................................................................................................................................................................................................................AT---------------------CACC------ACCAACAGC------AGCAGCA.............................................................................................................................................................................................................................................................................................................................2230.3310100
.........................................................................................................................................................................................................................................................................................................................................................AACAGC------AGCAGCATCA---------AC...............................................................................................................................................................................................................................................................................................................1860.3320020
............................................................................................................................................................................................................................................................................................................................................CACC------ACCAACAGC------AGCAGC..............................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
TC---------CT--GAATTTTGATTGTTTTTCGAGG-----------------C----------------------------------AG-GTGCGATTAAAC--GACGACAAAATTGTGCGGTTAA----------------------------------------------------AAAA-------------------A-------------------GTGCA------------------GGC-----------------------------TCACGCTCA------AGGG-----CAACTGGAG---------------------CAGT------TCGAGCAGC------AGGAACAGCA---------ACA-GC------------AGCA---------------GCAGCAGCAG---------------CAGCAGCAG-CATCTGCAT------CTGCATCTGCAGCAG-------------C---------A------------AC---------AGTTGCA---ACAGCAGCAGCAGCAACAACAACA-----C-----------------------------------------------------------TATCACCAC-------------------TACAGCG---------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................CA-GC------------AGCA---------------GCAGCAGCAG---------------CAGCAGCAG-C........................................................................................................................................................................................................................................28200.7515000000000015
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACA-----C-----------------------------------------------------------T........................................................2130.33100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAAC...........................................................................................................................21200.10202000000000
........................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------ACA-GC------------AGCA---------------GCAGCAGCAG---------------...................................................................................................................................................................................................................................................26200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACA-GC------------AGCA---------------GCAGCAG.....................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
AGTG----CTTCGACGA---------------------------------------TGGCCACAGCACCGACTACCATGTGCTGACCTCAG-TGTC---CGATCTG---------------------------------------------------------------------------------------CATACGCT------------------------G--------------------------------AAGGACCCCAGTCCCTATGCCCTCGCCCA--------------CGAGCAAC---------------------------------TCCACCAGC------AGC------------------A-------------GCAGCAC---------------CAGCAGCAA---------------CTGCATCAC-CA------------GCAG---------C-------------------AGCAGCA------------AC---TTT---AC---CA---CCAGCAA---------------CA---------------GCAGCAGCAGC------AA---------C---------ATCAC-------CACCACCAC-----AACAATTCCACCA-----------------------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................TATGCCCTCGCCCA--------------CGAGCA......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................................................GTC---CGATCTG---------------------------------------------------------------------------------------CATACGCT------------------------G--------------------------------AAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CA---------------GCAGCAGCAGC------A.........................................................................................19200.1020000020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---------------CA---------------GCAGCAGCAGC------AA---------C---------.....................................................................22200.0510100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------CA---------------GCAGCAGCAGC------AA---------C---------A....................................................................21200.0510000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAC-CA------------GCAG---------C-------------------AGCAGC....................................................................................................................................................................................18200.0510100000

Generated: 05/17/2015 at 10:47 PM