dmo_646

CDS [Dmoj\GI15425-cds]; exon [dmoj_GLEANR_16165:5]; CDS [Dmoj\GI15425-cds]; exon [dmoj_GLEANR_16165:4]; intron [Dmoj\GI15425-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------################################################## GATCAGTTGTCCACGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTGCTGCAACTGCATCAGCAACAGCAGCAGCAACAGCAGCAACAGCTGCAACAGCAGCAGCAAAGAAAGACAATATCCACCGTGATCCTGGCCAAGGATCCGACACACAAAAGAC ************************************************.(((((((..(((...((((....((.((.......)).))....))))...)))..))))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo
.............................................CAACAGTTGCTGCAACTGCATCAGC................................................................................................	25	0	1	1.00	1	1	0	0
............ACGCCCCAGCAGCAGAAGCAGCAGC.................................................................................................................................	25	1	2	0.50	1	0	1	0
.....................................AGCGGCAGCAACAGTTGCTGCA...........................................................................................................	22	1	8	0.13	1	1	0	0
......................................GCAGCAGCAACGGTTGCTGCA...........................................................................................................	21	1	13	0.08	1	1	0	0
...............................................................CATCAGCAACAGCAGCAGC....................................................................................	19	0	20	0.05	1	1	0	0
...........................................................................CAGCAGCAACAGCAGCAAC........................................................................	19	0	20	0.05	1	1	0	0
.......................................................................................CATCAACAGCTGCAACAGCA...........................................................	20	1	20	0.05	1	1	0	0
................................................................ATCAGCAACAGCAGCAGCA...................................................................................	19	0	20	0.05	1	0	0	1
.............................GCAGCAGCAGCAGCAGCAACAGTT.................................................................................................................	24	0	20	0.05	1	1	0	0
..............................CAGCAGCAGCAGTAGCAACAGTT.................................................................................................................	23	1	20	0.05	1	0	0	1
..................................AGCAGCAGCAGCAACAGTTGC...............................................................................................................	21	0	20	0.05	1	0	0	1

CTAGTCAACAGGTGCGGGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCAACGACGTTGACGTAGTCGTTGTCGTCGTCGTTGTCGTCGTTGTCGACGTTGTCGTCGTCGTTTCTTTCTGTTATAGGTGGCACTAGGACCGGTTCCTAGGCTGTGTGTTTTCTG ************************************************.(((((((..(((...((((....((.((.......)).))....))))...)))..))))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body
...............................................TGCCAACGACCTTGAAGTAG...................................................................................................	20	3	9	0.11	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6473:2882494-2882659 +	dmo_646	GATCAGTTGTC----CAC--GCCCCAG---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTGCTGCAA------------------------------------CTGCAT--------CAGCAACAGC----AGCAGCAAC---------AGCAG---------C-------------AAC---AG--------CTGCAACAGCAG---CAG---CAA---------------------AG----AA----------------AGACAAT------------------ATCCACCGTGATCCTGGCC-----------------A---------------------AGGATC----CGACACACAAAAGAC-
droVir3	scaffold_13047:13338787-13338926 -		GCCCA-----------------CACAGCAACAACA---GCAGCAGCAACAGCAGCAGCAACAACAGCAG------------------CAACA------------ACAACAGC--------AGCAACAGC----AGCAGCAACAGCAGCAGCAACAA----------CAGCAGCAACAAC--------------------------A---A---CAAC------------------------------------------------------------------------AGCCGGTGC--AGCTGGTC-----------------C---------------------AGGAGC----C------------AA-
droGri2	scaffold_14853:1429261-1429426 -		GAACAGTTGCCCACCACCGCCACCCAGCAGCAGCA---GCAGCAGTTGCT---------------CCAGCTCCATCAGCACCAACAACAGCA------------ACAGCAACA------------------------ACAAC------AACAGCAA-------------CTT--------------------------CAACAGCAA---CAG---CAA---------------------TC----AA----------------AGACAAT------------------ATCCACCACGATCCTGGCC-----------------A---------------------AGGATC----CGACCCACAAAAGAC-
droWil2	scf2_1100000006444:734-884 -		AATGAGATCTA---------------TGAGCAACA---GCAACAGCAACAGCAGCAACAAATGCAA---------------------------------------CTGCAA--------CAACAACAGC----AGCCACAAT---------GGCAG-------------------------CAACAG-----------CAAC---AGCAGC--------------------------TGCAGCTCGAA----------------TACCGAG------------------AGTGCCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----GGCA-TTGAGTAGAC-
dp5	4_group3:7143688-7143835 -		CGTCA-------------------CAG---CAGCA---GCAGCAGCAGTCGCAGCAACAACAGCTG---------------------CCACCGCCTCCATTGCCGACGCAA--------CAGCAACAGC----AGCTGCAGC---------TG-------------CAGCAGCAACAGC--------------------------A---A---CAGCAG-----CCGACACAGC-------------------------------------------------------AGCCAG------CCGGGT------------------------------------------CACA----GGGCACGCAGGGCCC-
droPer2	scaffold_0:6968521-6968696 +		AATCAGTTGCA---------GGCACAGCTGCAACA---GCAACAGCAACAGCAGCAGCAGCAACAGCAT------------------------------------CTCCAACAGCAGCA--------GCAGCA----GCA---------CCATCAG-------------------------C-----------------------ATCAGC-----------------AACAGTTGCTGCTG----AA----------------CAATAATAACAACAACAATAATAATAACAGCAGCAACAGCAGCC-----------------T---------------------CGACTT----GGCCACACAGACGGC-
droAna3	scaffold_13335:2351648-2351802 +		GAGAAGGCGTC---------CGCCCAGCAGCAGCA---GCAGCAGGCGCAGCAGCAGGCC---CAACAG------------------CAGCA------------GGCGCAGCAGCACTC--------CCAGCA----GC------------------------------------------------------------------AG---CAG---CAAAACAACTC-TACGGCGGATCT---------------------------CA---------ACATGAAGAT-AGCCAGCGTGAAGAAGGTCT----------------G---------------------GGAGTC----GGCC---------AC-
droBip1	scf7180000395973:372736-372884 +		CAGCCACCAAC---------GCCACAGCAGCAGCA---GCAGGTGCAGGCGCAGCAGCAGGCGCAGCAA------------------------------------GTGCAG--------CAGCAGCAGG----CCCAGCAACAGCAGCAGCAGCAG----------AGTCAGCAG------C-----------------------AGGCTC-----------------GACTGCCGCAGCAT----------------------------T------------------ATCCT---------------------------------------------------CAAG-CGC----C-----AGGACAGCA-
droKik1	scf7180000302261:27626-27794 +		AT-CAGCAGCA---------TCCCCACCAGCAGCA---GCAGCAGCAGCAACATCTGCATCACCATGTC------------------CTGCA------------ATTGCAG--------CAACAGCAGC----AGCAGCAAC---------AGCAC----------CTGCAG---------C-----------------------AGCAGCAACATCA--------------CT-------------------------------------------------------TG------CAGCACCAAA--TGCA----------------TACGCATCATAACTTTCAGGCACT----CGAGGCACCAGCAAC-
droFic1	scf7180000454072:3005255-3005419 +		CAGCAGTCGGC---------GCACCTG---CAGCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAC------------------CTCCA------------CCAGCAG--------CACCAACAGC----AGCAGCAAC---------AC-------------CTGCAG---------C-----------------------AGCAGCAGCAGCAA-----------------------------------CCGC------AGGCACT------------------CGCGCT------------C-----------------A-----TGCACCCCGCCTCGCTGGCGCT-----GAGGAA-CAGCAAC-
droEle1	scf7180000491044:311070-311204 +		GT-----TGCA---------TCCGCGCCAGCAACA---GCAGCAGCAACAACAGCAGCAACAGTTGCAG------------------------------------CTGCAA--------CAGCAACAGC----AGCAGCAGC---------AGCAG-------------GCG--------------------------CAACAGCA---GCAG---CAA-----TCA-----AT-------------------------------------------------------CGCCGGTTCGATTGTGGGC-----------------G---------------------TG---------------GACCCGGC-
droRho1	scf7180000779501:129131-129293 -		GC-----TGCG---------CTCGCAGCAGCAACAGCACTTGCAGCAGCAGCACCAGCAACACCAGCAG------------------CACCA------------GCAGCAGCAGCAGCA--------GCAGCA----GCA---------ACAGCAGCAACAGCAG-CAGCTGCAGCAGC--------------------------A---G---CAGCAG-----GCG----------------------------------------------------------------------GCGCAGCAACT-----------------GACATCC----------------GCTTC----CAACACACCAGCAACA
droBia1	scf7180000302193:5797457-5797611 +		GATCATC-GTC---------CCTCCAG---CAGCA---GCAGCAGAATCAGCAGCAAAAACCGCAGCAG------------------CAGCA------------GCAGCAACAACAGCA--------GCAGCC----ACA---------TCAACAG-------------------------C-----------------------AGGCGC-----------------AACAGCAGCAGCAGAATCATTACCATCAGC---------------------------------------------AGGCC-----------------A---------------------AGCATCCGTCGCCC--ACGCAACAG-
droTak1	scf7180000415380:799753-799916 +		AATCAGCTGCA---------GGCCCAGCTGCAACA---GCAACAGCAGCAGCAGCAACAACAGCAGCAA------------------CTGCA------------GCAGCAGCAGCAGCA--------ACAGCA----ACA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTCTTG----AA----------------TAACAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAGCGGC-
droEug1	scf7180000409802:33244-33410 -		AATCAGCTGCA---------GGCTCAGCTGCAACA---GCAACAGCAGCAGCAGCAACAACAGCAGCAA------------------------------------CTGCAA--------CAGCAACAGC----AGCAGCAACAGCAACATCAGCAA-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTG----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCT-----------------T---------------------GGAATT----GGCAACACAAACGGC-
dm3	chr3R:9907381-9907544 +		AATCAGTTGCA---------GGCTCAGCTGCAACA---GCAGCAGCAGCAGCAGCAGGCGCAGCAACAG------------------CAGCA------------GGCGCAGCAGCAACA--------ACAGCA----GCA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTA----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAACGGC-
droSim2	3r:13890049-13890209 -		GGCCCGCCGTC----AAC--ACCCCAG---CAGCA---ACAACAACAGCAGCAACAG------CAACA---------------------------------------GCAG-----------------CAGCA----ACA---------ACAGCAA-------------CAGCAGCAGCAAC---AGGCGTCGAA---C------GGCGGCAACAGCAA-----TGC-CACGCCCGCCCA---------------------------AA---------GTCCGACGAG-GA-----------GCAGCG-----------------G---------------------AGGAGC-------CGCATACCACCC-
droSec2	scaffold_0:12108701-12108863 -		AATCAGCTGCA---------GGCTCAGCTGCAACA---GCAGCAGCAGCAGGCGCAGCAACAGCAACAG------------------CAGCA------------GGCGCAGCAGCAACA--------ACAGCA----GCA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTA----AA----------------TAATAAC------------------AACAACGGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAACGG--
droYak3	3R:16524121-16524284 -		AATCAGCTGCA---------GGCCCAGCTGCAACA---GCAACAGCAGCAGCAGCAGGCGCAGCTACAA------------------CAGCA------------GGCGCAGCAGCAACA--------GCAGCC----ACA---------CCAGCAA-------------------------C-----------------------ATCAGC-----------------AACAGTTGCTGCTG----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAACT----GGCAACACAAACGGC-
droEre2	scaffold_4929:12543686-12543839 -		GC--------------------GTCAGCAGTAACA---GCAGCAGCAGCAGCAGCAGCAACAGCAGCAG------------------------------------CAGCAA--------TAACAACAGC----AGCAGCAGC---------AGCAG---------C-------------GGG---A---------------------------------------GGGTGCAA---------------------CAGCAGGCAAGGACCAT------------------AAACA----------AAA--TGCAATAATGCTCGACA---------------------TGACACCGA--AACCCGCAGAAAAC-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GATCAGTTGTC----CAC--GCCCCAG---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTGCTGCAA------------------------------------CTGCAT--------CAGCAACAGC----AGCAGCAAC---------AGCAG---------C-------------AAC---AG--------CTGCAACAGCAG---CAG---CAA---------------------AG----AA----------------AGACAAT------------------ATCCACCGTGATCCTGGCC-----------------A---------------------AGGATC----CGACACACAAAAGAC-	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................CAACAGTTGCTGCAA------------------------------------CTGCAT--------CAGC..........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................CAT--------CAGCAACAGC----AGCAGC..........................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................C----AGCAGCAAC---------AGCAG---------C-------------AAC---............................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................................AT--------CAGCAACAGC----AGCAGCA.........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
......................................GCAGCAGCAGCAGCAGCAACAGTT.......................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...........................................AGCAGCAGCAGCAACAGTTGC.....................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droVir3

GCCCA-----------------CACAGCAACAACA---GCAGCAGCAACAGCAGCAGCAACAACAGCAG------------------CAACA------------ACAACAGC--------AGCAACAGC----AGCAGCAACAGCAGCAGCAACAA----------CAGCAGCAACAAC--------------------------A---A---CAAC------------------------------------------------------------------------AGCCGGTGC--AGCTGGTC-----------------C---------------------AGGAGC----C------------AA-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................C--------------------------A---A---CAAC------------------------------------------------------------------------AGCCGGTG............................................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................................................AC------------------------------------------------------------------------AGCCGGTGC--AGCTGGTC-----------------C---------------------AGGAGC----C------------A..	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GC--AGCTGGTC-----------------C---------------------AGGAGC----C------------...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................A---CAAC------------------------------------------------------------------------AGCCGGTGC--AGCTGGTC-----------------C---------------------..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...CA-----------------CACAGCAACAACA---GCAGC..........................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AACAGC----AGCAGCAACAGCA...................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCAACAAC--------------------------A---A---CAAC------------------------------------------------------------------------AGCCG...............................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCAG------------------CAACA------------ACAACAGC--------AGCAACAGC----A...............................................................................................................................................................................................................................................	27	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACAA----------CAGCAGCAACAAC--------------------------........................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AGCAG------------------CAACA------------ACAACAGC--------.............................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AACAACAGCAG------------------CAACA------------AC...........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GCAACAGCAGCAGCAACAA----------CAGC...........................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CAG------------------CAACA------------ACAACAGC--------AGCAACAGC----................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AACAACAGCAG------------------CAACA------------ACAACAGC--------A............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AGCAACAGC----AGCAGCAACAGCAGCAGCA.............................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................G------------------CAACA------------ACAACAGC--------AGCAACAGC----................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AGC----AGCAGCAACAGCAGCA................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AACA---GCAGCAGCAACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CAG------------------CAACA------------ACAACAGC--------AGCAA........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGCAGCAGCAACAACAGCAG------------------CAACA------------AC...........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGCAACAACA---GCAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AGC----AGCAGCAACAGCAGCAGCA.............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CAGCAACAGCAGCAGCAACA..........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AACA------------ACAACAGC--------AGCAACAGC----................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AACAGC----AGCAGCAACAGCAGCAGC..............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................AACAGCAG------------------CAACA------------ACAACAGC--------A............................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCAACAGCAGCAGCAACAACAGC..................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGCAACAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AGCAACAGC----AGCAGCAACA......................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................CAGC--------AGCAACAGC----AGCAGCAACA......................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GC--------AGCAACAGC----AGCAGCAACA......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CAACAGCAGCAGCAACAA----------CAGCA..........................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CAACAGCAGCAGCAACAA----------C..............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAGCAACAACAGCAG------------------CAACA------------AC...........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AACA------------ACAACAGC--------AGCAACA......................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................CAACAGCAG------------------CAACA------------ACAACAG......................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CAGCAACAA----------CAGCAGCAACAAC--------------------------........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAACAGCAGCAGCAACAAC.....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ACAGC--------AGCAACAGC----AGCAGCAAC.......................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GAACAGTTGCCCACCACCGCCACCCAGCAGCAGCA---GCAGCAGTTGCT---------------CCAGCTCCATCAGCACCAACAACAGCA------------ACAGCAACA------------------------ACAAC------AACAGCAA-------------CTT--------------------------CAACAGCAA---CAG---CAA---------------------TC----AA----------------AGACAAT------------------ATCCACCACGATCCTGGCC-----------------A---------------------AGGATC----CGACCCACAAAAGAC-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AATGAGATCTA---------------TGAGCAACA---GCAACAGCAACAGCAGCAACAAATGCAA---------------------------------------CTGCAA--------CAACAACAGC----AGCCACAAT---------GGCAG-------------------------CAACAG-----------CAAC---AGCAGC--------------------------TGCAGCTCGAA----------------TACCGAG------------------AGTGCCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----GGCA-TTGAGTAGAC-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....AGATCTA---------------TGAGCAACA---GCAACAGCAAC....................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
.ATGAGATCTA---------------TGAGCAACA---GCAA...........................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................CGAA----------------TACCGAG------------------AGTGCCCGTGGG........................................................................	23	14	0.21	3	0	3	0	0	0
....................................................................................................................................................................................................................................................CGAA----------------TACCGAG------------------AGTGCCCGTGG.........................................................................	22	14	0.21	3	0	3	0	0	0
.......................................................AACAAATGCAA---------------------------------------CTGCAA--------CAACAAC.......................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0
........................................AACAGCAACAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
....................................................................................................................................................................................................................................................CGAA----------------TACCGAG------------------AGTGCCCGTGGGTG......................................................................	25	14	0.14	2	0	2	0	0	0
......................................................................................................................................................................................................................................................AA----------------TACCGAG------------------AGTGCCCGTGGGTG......................................................................	23	14	0.14	2	0	2	0	0	0
................................................................................................................................................................................................................AGC--------------------------TGCAGCTCGAA----------------TACCGAG------------------AGTG................................................................................	25	17	0.12	2	0	1	0	1	0
........................................................................................................................................CACAAT---------GGCAG-------------------------CAACAG-----------CAAC---AGCAGT--------------------------........................................................................................................................................	27	9	0.11	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................TGGGTGTGGCC-----------------A---------------------AGA-CC----GGCA-TTGAGT.....	27	19	0.11	2	0	0	0	2	0
.............................................................TGCAA---------------------------------------CTGCAA--------CAACAACAGC----A...............................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................CGTGGGTGTGGCC-----------------A---------------------AGA-CC----GGC.............	22	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................CGTGGGTGTGGCC-----------------A---------------------AGA-CC----GG..............	21	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................CCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----GG..............	23	20	0.10	2	0	2	0	0	0
............................................................................................................CAA--------CAACAACAGC----AGCCACAAT---------G.............................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................GAA----------------TACCGAG------------------AGTGCCCGTGGGT.......................................................................	23	14	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................................................AA----------------TACCGAG------------------AGTGCCCGTGGG........................................................................	21	14	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................................................AA----------------TACCGAG------------------AGTGCCCGTGG.........................................................................	20	14	0.07	1	0	0	1	0	0
......................................................................................................................................................................................................................................................AA----------------TACCGAG------------------AGTGCCCGTGGGTGT.....................................................................	24	14	0.07	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................A----------------TACCGAG------------------AGTGCCCGTGGGTGT.....................................................................	23	14	0.07	1	0	1	0	0	0
...........................................AGCAACAGCAGCAACAAATGCAA---------------------------------------CTGC........................................................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0
....................................................................................................................................................................................................................................................CGAA----------------TACCGAG------------------AGTGCCCGTG..........................................................................	21	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................................................................GCAGC--------------------------TGCAGCTCGAA----------------TACCGA.......................................................................................................	22	17	0.06	1	0	1	0	0	0
......................................................................................................................................................................................................CAAC---AGCAGC--------------------------TGCAGCTCGAA----------------TACCG........................................................................................................	26	17	0.06	1	0	1	0	0	0
................................................................................................................................................................................................................................................AGCTCGAA----------------TACCGAG------------------AGTGCCC.............................................................................	22	17	0.06	1	0	1	0	0	0
..............................................................................................................................................................................................................................................GCAGCTCGAA----------------TACCGAG------------------AGTGCC..............................................................................	23	18	0.06	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................GGTGTGGCC-----------------A---------------------AGA-CC----GGCA-TTGAGTA....	26	19	0.05	1	0	1	0	0	0
.......................................................AACAAATGCAA---------------------------------------CTGCAA--------CAACAACAGC----................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..............................CAACA---GCAACAGCAACAGCAG...............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................AACAAATGCAA---------------------------------------CTGCAA--------CAACAA........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................A--------CAACAACAGC----AGCCACA.........................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TGCCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----GG..............	25	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................GTGGCC-----------------A---------------------AGA-CC----GGCA-TTGAGTA....	23	20	0.05	1	0	1	0	0	0
.............................................................TGCAA---------------------------------------CTGCAA--------CAACAACAGC----AGC.............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................CGTGGGTGTGGCC-----------------A---------------------AGA-CC----G...............	20	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................CCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----GGCA-T..........	26	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................CCCGTGGGTGTGGCC-----------------A---------------------AGA-CC----................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................AG------------------AGTGCCCGTGGGTGTGG...................................................................	19	20	0.05	1	0	0	0	1	0
...............................AACA---GCAACAGCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.......................................................AACAAATGCAA---------------------------------------CTGCAA--------CAACAACAGC----A...............................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................G------------------AGTGCCCGTGGGTGTGGCC-----------------A---------------------AG........................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................CCCGTGGGTGTGGCC-----------------A---------------------AG........................	18	20	0.05	1	0	1	0	0	0

dp5

CGTCA-------------------CAG---CAGCA---GCAGCAGCAGTCGCAGCAACAACAGCTG---------------------CCACCGCCTCCATTGCCGACGCAA--------CAGCAACAGC----AGCTGCAGC---------TG-------------CAGCAGCAACAGC--------------------------A---A---CAGCAG-----CCGACACAGC-------------------------------------------------------AGCCAG------CCGGGT------------------------------------------CACA----GGGCACGCAGGGCCC-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................A---GCAGCAGCAGTCGCAGCA.............................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................CAGCA---GCAGCAGCAGTCGCA................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................AG---CAGCA---GCAGCAGCAGTCG..................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................CAGCA---GCAGCAGCAGTCGC.................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.GTCA-------------------CAG---CAGCA---GCAGCT.........................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................AGCA---GCAGCAGCAGTCGCA................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AATCAGTTGCA---------GGCACAGCTGCAACA---GCAACAGCAACAGCAGCAGCAGCAACAGCAT------------------------------------CTCCAACAGCAGCA--------GCAGCA----GCA---------CCATCAG-------------------------C-----------------------ATCAGC-----------------AACAGTTGCTGCTG----AA----------------CAATAATAACAACAACAATAATAATAACAGCAGCAACAGCAGCC-----------------T---------------------CGACTT----GGCCACACAGACGGC-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................AACAGCAGCC-----------------T---------------------CGACTT----GGCCACACA.......	26	1	1.00	1	0	0	1	0	0	0
...........................................AGCAACAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..............................................................................................................ACAGCAGCA--------GCAGCA----GCA---------CCA.............................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................................CAACAGCAGCA--------GCAGCA----GCA---------CC..............................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droAna3

GAGAAGGCGTC---------CGCCCAGCAGCAGCA---GCAGCAGGCGCAGCAGCAGGCC---CAACAG------------------CAGCA------------GGCGCAGCAGCACTC--------CCAGCA----GC------------------------------------------------------------------AG---CAG---CAAAACAACTC-TACGGCGGATCT---------------------------CA---------ACATGAAGAT-AGCCAGCGTGAAGAAGGTCT----------------G---------------------GGAGTC----GGCC---------AC-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................ACAACTC-TACGGCGGATCT---------------------------CA---------A..............................................................................................	22	1	2.00	2	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................GAAGAAGGTCT----------------G---------------------GGAGTC----GGCC---------...	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GAT-AGCCAGCGTGAAGAAGGTCT----------------G---------------------G.........................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................AACAACTC-TACGGCGGATCT---------------------------CA---------AC.............................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................GGCC---CAACAG------------------CAGCA------------GGCGCAGCA....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....GGCGTC---------CGCCCAGCAGCAGCA---GCA............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................CCAGCA----GC------------------------------------------------------------------AG---CAG---CAAAACAACTC-TA...............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................AAAACAACTC-TACGGCGG.........................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGAAGAT-AGCCAGCGTGAAGAAT....................................................................	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................AGCGTGAAGAAGGTCT----------------G---------------------GGAGTC----................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TC--------CCAGCA----GC------------------------------------------------------------------AG---CAG---CAAAACAACTC-.................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................AGCAGCAGCA---GCAGCAGGCGCAGCAG...............................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
.........................AGCAGCAGCA---GCAGCAGGCG.....................................................................................................................................................................................................................................................................................................................................	20	19	0.11	2	1	0	0	0	0	1
...............................AGCA---GCAGCAGGCGCAGCA................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	1	0	0	0
.........................AGCAGCAGCA---GCAGCAGGC......................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	1	0	0	0	1
..........................GCAGCAGCA---GCAGCAGGCGC....................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0

droBip1

CAGCCACCAAC---------GCCACAGCAGCAGCA---GCAGGTGCAGGCGCAGCAGCAGGCGCAGCAA------------------------------------GTGCAG--------CAGCAGCAGG----CCCAGCAACAGCAGCAGCAGCAG----------AGTCAGCAG------C-----------------------AGGCTC-----------------GACTGCCGCAGCAT----------------------------T------------------ATCCT---------------------------------------------------CAAG-CGC----C-----AGGACAGCA-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AT-CAGCAGCA---------TCCCCACCAGCAGCA---GCAGCAGCAGCAACATCTGCATCACCATGTC------------------CTGCA------------ATTGCAG--------CAACAGCAGC----AGCAGCAAC---------AGCAC----------CTGCAG---------C-----------------------AGCAGCAACATCA--------------CT-------------------------------------------------------TG------CAGCACCAAA--TGCA----------------TACGCATCATAACTTTCAGGCACT----CGAGGCACCAGCAAC-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGCAGTCGGC---------GCACCTG---CAGCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAC------------------CTCCA------------CCAGCAG--------CACCAACAGC----AGCAGCAAC---------AC-------------CTGCAG---------C-----------------------AGCAGCAGCAGCAA-----------------------------------CCGC------AGGCACT------------------CGCGCT------------C-----------------A-----TGCACCCCGCCTCGCTGGCGCT-----GAGGAA-CAGCAAC-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GT-----TGCA---------TCCGCGCCAGCAACA---GCAGCAGCAACAACAGCAGCAACAGTTGCAG------------------------------------CTGCAA--------CAGCAACAGC----AGCAGCAGC---------AGCAG-------------GCG--------------------------CAACAGCA---GCAG---CAA-----TCA-----AT-------------------------------------------------------CGCCGGTTCGATTGTGGGC-----------------G---------------------TG---------------GACCCGGC-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GC-----TGCG---------CTCGCAGCAGCAACAGCACTTGCAGCAGCAGCACCAGCAACACCAGCAG------------------CACCA------------GCAGCAGCAGCAGCA--------GCAGCA----GCA---------ACAGCAGCAACAGCAG-CAGCTGCAGCAGC--------------------------A---G---CAGCAG-----GCG----------------------------------------------------------------------GCGCAGCAACT-----------------GACATCC----------------GCTTC----CAACACACCAGCAACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GATCATC-GTC---------CCTCCAG---CAGCA---GCAGCAGAATCAGCAGCAAAAACCGCAGCAG------------------CAGCA------------GCAGCAACAACAGCA--------GCAGCC----ACA---------TCAACAG-------------------------C-----------------------AGGCGC-----------------AACAGCAGCAGCAGAATCATTACCATCAGC---------------------------------------------AGGCC-----------------A---------------------AGCATCCGTCGCCC--ACGCAACAG-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATCAGCTGCA---------GGCCCAGCTGCAACA---GCAACAGCAGCAGCAGCAACAACAGCAGCAA------------------CTGCA------------GCAGCAGCAGCAGCA--------ACAGCA----ACA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTCTTG----AA----------------TAACAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAGCGGC-	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATCAGCTGCA---------GGCTCAGCTGCAACA---GCAACAGCAGCAGCAGCAACAACAGCAGCAA------------------------------------CTGCAA--------CAGCAACAGC----AGCAGCAACAGCAACATCAGCAA-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTG----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCT-----------------T---------------------GGAATT----GGCAACACAAACGGC-	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATCAGTTGCA---------GGCTCAGCTGCAACA---GCAGCAGCAGCAGCAGCAGGCGCAGCAACAG------------------CAGCA------------GGCGCAGCAGCAACA--------ACAGCA----GCA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTA----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAACGGC-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................CGCAGCAACAG------------------CAGCA------------GGCGC........................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................A---GCAGCAGCAGCAGCAGCAGGCGCA.......................................................................................................................................................................................................................................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CA---------GGCTCAGCTGCAACA---GC.............................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCC-----------------T---------------------GGAATT----................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GGCGCAGCAACAG------------------CAGCA------------GGCGCA.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AGCAGCC-----------------T---------------------GGAATT----GGCAACACA.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................AGCAACA--------ACAGCA----GCA---------TCG.............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................CA---GCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGCAACA---GCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AGCAGCAGCAGCAGCAGGCGCC.......................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AAC------------------AACAACAGCAGCAGC.....................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AAC------------------AACAACAGCAGCAGCAG...................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AACA---GCAGCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGCCCGCCGTC----AAC--ACCCCAG---CAGCA---ACAACAACAGCAGCAACAG------CAACA---------------------------------------GCAG-----------------CAGCA----ACA---------ACAGCAA-------------CAGCAGCAGCAAC---AGGCGTCGAA---C------GGCGGCAACAGCAA-----TGC-CACGCCCGCCCA---------------------------AA---------GTCCGACGAG-GA-----------GCAGCG-----------------G---------------------AGGAGC-------CGCATACCACCC-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................CAACAACAGCAGCAACAG------CA....................................................................................................................................................................................................................................................................................................................	20	20	2.70	54	0	0	0	0	54	0	0	0	0	0	0	0	0	0	0	0	0
...............................AGCA---ACAACAACAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................	21	16	1.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGCAAC---AGGCGTCGAA---C------GGC.....................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AGCAGCAGCAAC---AGGCGT......................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................CAACAG------CAACA---------------------------------------GCAG-----------------CAG..................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AATCAGCTGCA---------GGCTCAGCTGCAACA---GCAGCAGCAGCAGGCGCAGCAACAGCAACAG------------------CAGCA------------GGCGCAGCAGCAACA--------ACAGCA----GCA---------TCAGCAG-------------------------C-----------------------ACCAGC-----------------AACAGTTGCTGCTA----AA----------------TAATAAC------------------AACAACGGCAGCAGCAGCC-----------------T---------------------GGAATT----GGCAACACAAACGG--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....AGCTGCA---------GGCTCAGCTGCAACA---...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...............................AACA---GCAGCAGCAGCAGGCGC..............................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	1
................................................................................................................AGCAACA--------ACAGCA----GCA---------TCAG............................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1
...............................................................CAACAG------------------CAGCA------------GGCGCAG......................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	1	0
............................................................................................................................................................................................................................................................................AAC------------------AACAACGGCAGCAGC.....................................................................	18	12	0.08	1	0	0	1	0
......................................................................................................................A--------ACAGCA----GCA---------TCAGCAG-------------------------C-----------------------A.......................................................................................................................................................................	19	14	0.07	1	0	0	0	1

droYak3

AATCAGCTGCA---------GGCCCAGCTGCAACA---GCAACAGCAGCAGCAGCAGGCGCAGCTACAA------------------CAGCA------------GGCGCAGCAGCAACA--------GCAGCC----ACA---------CCAGCAA-------------------------C-----------------------ATCAGC-----------------AACAGTTGCTGCTG----AA----------------TAATAAC------------------AACAACAGCAGCAGCAGCC-----------------T---------------------GGAACT----GGCAACACAAACGGC-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................AGCAGGCGCAGCTACAA------------------CAGCA------------GGC..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AA-------------------------C-----------------------ATCAGC-----------------AACAGTTGCTGCT....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GCAGCC-----------------T---------------------GGAACT----GGCAACAC........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................C-----------------------ATCAGC-----------------AACAGTTGCTGCT....................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCC-----------------T---------------------GGAACT----GG..............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........GCA---------GGCCCAGCTGCAACA---GCAACAGC.......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................AGCAGCAGCAGCAGGCGCAGCT....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................AACAGCAGCAGCAGCAGGCGCA.......................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................GCAACAGCAGCAGCAGCAGGCG.........................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AATAAC------------------AACAACAGCAGCAGC.....................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0
......................................GCAACAGCAGCAGCAGCAGGC..........................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.................................CA---GCAACAGCAGCAGCAGCAG............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................GCAACA---GCAACAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GC--------------------GTCAGCAGTAACA---GCAGCAGCAGCAGCAGCAGCAACAGCAGCAG------------------------------------CAGCAA--------TAACAACAGC----AGCAGCAGC---------AGCAG---------C-------------GGG---A---------------------------------------GGGTGCAA---------------------CAGCAGGCAAGGACCAT------------------AAACA----------AAA--TGCAATAATGCTCGACA---------------------TGACACCGA--AACCCGCAGAAAAC-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................CAGCAACAGCAGCAG------------------------------------CAGCA.......................................................................................................................................................................................................................................................................	20	20	0.15	3	3	0	0	0	0	0	0
....................................................AGCAGCAACAGCAGCAG------------------------------------CAGC........................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0

-25.1	-24.7	-24.5	-24.4

dmo_646

scaffold_6473:2882544-2882609 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads