ID:

dmo_64

 Coordinate:

scaffold_6308:1299051-1299114 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-29.8 -29.7

Flybase annnotation

Antisense to intron [Dmoj\GI10984-in]

No Repeatable elements found

Sense Strand Reads

AGAAAATTTGTATAGTACCTGCCAGCAAAGGAAATTTTTAGTCTATGGGTTCTGCACGGTGGCTCTTTTAAAAGTTTTTTATATATACTGTTAAAATGGCCGTCATGCAAAATTCAAGGGCTAAATAAGCAACGAAACGTGCAGAAACCCAATTCTTTATACAG

***********************************.((((((((.((((((.((((.(((((((.((((((.(((...........))).)))))).))))))).)))).)))))).))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 V041

embryo

 V056

head

 V049

head

 M060

embryo
..................................................TCTGCACGGTGGCTCTTTTAA............................................................................................. 21 0 1 283.00 283 234 27 8 7 4 3
..................................................TCTGCACGGTGGCTCTTTTAAA............................................................................................ 22 0 1 168.00 168 145 8 9 2 2 2
...........................................................................................TAAAATGGCCGTCATGCAAAAT................................................... 22 0 1 49.00 49 36 11 0 1 0 1
..................................................TCTGCACGGTGGCTCTTTTA.............................................................................................. 20 0 1 37.00 37 27 7 1 1 0 1
..................................................TCTGCACGGTGGCTCTTTTAAAA........................................................................................... 23 0 1 22.00 22 20 2 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAA..................................................... 20 0 1 13.00 13 12 1 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAAA.................................................... 21 0 1 12.00 12 7 5 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTT............................................................................................... 19 0 1 9.00 9 4 3 0 1 1 0
..................................................TCTGCACGGTGGCTCTTTTAC............................................................................................. 21 1 1 8.00 8 7 0 0 0 1 0
..................................................TCTGCACGGTGGCTCTTTTC.............................................................................................. 20 1 1 7.00 7 7 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAC........................................................................................... 23 1 1 6.00 6 5 0 0 1 0 0
..........................................................................................TTAAAATGGCCGTCATGCAAAA.................................................... 22 0 1 6.00 6 6 0 0 0 0 0
..........................................................................................TTAAAATGGCCGTCATGCAAA..................................................... 21 0 1 5.00 5 4 0 0 0 1 0
...........................................................................................TAAAATGGCCGTCATGCAAAAA................................................... 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTT.............................................................................................. 20 1 1 5.00 5 3 1 0 0 1 0
..................................................TCTGCACGGTGGCTCTTTTAT............................................................................................. 21 1 1 4.00 4 3 0 0 0 1 0
...........................................................................................TAAAATGGCCGTCATGCAAAATC.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAA...................................................... 19 0 1 3.00 3 3 0 0 0 0 0
..................................................TCTGCACGGCGGCTCTTTTAA............................................................................................. 21 1 1 3.00 3 1 0 0 0 0 2
..................................................TCTGCACGGTGGCTCTTTTCA............................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAAT.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................CTGCACGGTGGCTCTTTTAAA............................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAAA.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TCTGCACGGAGGATCTTTTAAA............................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................GTTAAAATGGCCGTCATGCAAA..................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................TCCGCACGGTGGCTCTTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAATC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAATC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAAGTT........................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..................................................TCTGAACGGTGGCTCTTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAAATGGCCGCCATGCAAAA.................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................TATGCACGGGGGCTCTTTTAA............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTATTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGGGGCTCTTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAAAA......................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
..................................................TCTGCACTGTGGCTCTTTTAAAAA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGTCTCTTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCATGGTGGCTCTTTTAAAC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................CTCTGCACGGTGGCTCTTTTAAA............................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAAG.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTTG............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTCC............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTCGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAATC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................TCTGCACGGCGGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TATGCACGGTGGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................TTTTGTATATACTGTTAAAA.................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAAAAGT......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................TCTTCACGGTGGCTCTTTTC.............................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAAAAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................CTGCACGGTGGCTCTTTTAA............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.....................................................CCACGGTGGCTCTTTTAA............................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAAATGGCCGTCATGCAAAACC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTATC............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTCCACGGTGGCTCTTTTAAC............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCCTTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCCGCACGGTGGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1
...........................................................................................TAAAATGGCCGTCATGCAAAAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGGGGCTCTTTTA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTGGCTCTTTTAG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTAAAATGGCCGTCAGGCAAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGTTGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAAGTGGCCGTCATGCAAAAT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGGACGGTGGCTCTTTTAAA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTGCACGGCGGCTCTTTTT.............................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0
..............................................TGGTTCTGCCCGGTGGCT.................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1
..................................................TCTGCAGGGAGGCTCTTTTT.............................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0
.........................................TATATGGATTCTTCACGGT........................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0
....................................................TGCCCGGGGGCTCTTTTGA............................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0

Anti-sense strand reads

TCTTTTAAACATATCATGGACGGTCGTTTCCTTTAAAAATCAGATACCCAAGACGTGCCACCGAGAAAATTTTCAAAAAATATATATGACAATTTTACCGGCAGTACGTTTTAAGTTCCCGATTTATTCGTTGCTTTGCACGTCTTTGGGTTAAGAAATATGTC

************************************.((((((((.((((((.((((.(((((((.((((((.(((...........))).)))))).))))))).)))).)))))).))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
........................................................................................ACAATTTTACCGGCAGTACGTT...................................................... 22 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1299001-1299164 + dmo_64 confident AGAAAATTTGTATAGTACCTGCCAGCAAAGGAAATTTTTAGTCTATGGGTTCTGCACGGTGGCTCTTTTAAAAGTTTTTTATATATACTGTTAAAATGGCCGTCATGCAAAATTCAAGGGCTAAATAAGCAACGAAACGTGCAGAAACCCAATTCTTTATACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGAAAATTTGTATAGTACCTGCCAGCAAAGGAAATTTTTAGTCTATGGGTTCTGCACGGTGGCTCTTTTAAAAGTTTTTTATATATACTGTTAAAATGGCCGTCATGCAAAATTCAAGGGCTAAATAAGCAACGAAACGTGCAGAAACCCAATTCTTTATACAGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................TCTGCACGGTGGCTCTTTTAA.............................................................................................211283.00283278473234
..................................................TCTGCACGGTGGCTCTTTTAAA............................................................................................221168.0016889222145
...........................................................................................TAAAATGGCCGTCATGCAAAAT...................................................22149.004911001136
..................................................TCTGCACGGTGGCTCTTTTA..............................................................................................20137.00377101127
..................................................TCTGCACGGTGGCTCTTTTAAAA...........................................................................................23122.00222000020
...........................................................................................TAAAATGGCCGTCATGCAAA.....................................................20113.00131000012
...........................................................................................TAAAATGGCCGTCATGCAAAA....................................................21112.0012500007
..................................................TCTGCACGGTGGCTCTTTT...............................................................................................1919.009301104
..................................................TCTGCACGGTGGCTCTTTTAC.............................................................................................2118.008001007
..................................................TCTGCACGGTGGCTCTTTTC..............................................................................................2017.007000007
..................................................TCTGCACGGTGGCTCTTTTAAAC...........................................................................................2316.006000105
..........................................................................................TTAAAATGGCCGTCATGCAAAA....................................................2216.006000006
..........................................................................................TTAAAATGGCCGTCATGCAAA.....................................................2115.005001004
...........................................................................................TAAAATGGCCGTCATGCAAAAA...................................................2215.005000005
..................................................TCTGCACGGTGGCTCTTTTT..............................................................................................2015.005101003
..................................................TCTGCACGGTGGCTCTTTTAT.............................................................................................2114.004001003
...........................................................................................TAAAATGGCCGTCATGCAAAATC..................................................2313.003000003
...........................................................................................TAAAATGGCCGTCATGCAA......................................................1913.003000003
..................................................TCTGCACGGTGGCTCTTTTAAC............................................................................................2212.002000002
...........................................................................................TAAAATGGCCGTCATGCAAAT....................................................2112.002000002
...................................................CTGCACGGTGGCTCTTTTAAA............................................................................................2112.002200000
..................................................TCTGCACGGTGGCTCTTTTAAAAA..........................................................................................2412.002000002
.........................................................................................GTTAAAATGGCCGTCATGCAAA.....................................................2211.001000001
..................................................TCTGCACGGTGGCTCTTTTAAATC..........................................................................................2411.001000001
...........................................................................................TAAAATGGCCGTCATGCAAATC...................................................2211.001000001
..................................................TCTGCACGGTGGCTCTTTTAAAAGTT........................................................................................2611.001000001
..................................................TCTGCACGGTGGCTCTTTTAAAAAA.........................................................................................2511.001100000
..................................................TCTGCACGGTGGCTCTTTTAAAAG..........................................................................................2411.001000001
..................................................TCTGCACGGTGGCTCTTTTTG.............................................................................................2111.001000001
..................................................TCTGCACGGTGGCTCTTTTCC.............................................................................................2111.001000001
..................................................TCTGCACGGTGGCTCTTTTAATC...........................................................................................2311.001100000
..................................................TCTGCACGGTGGCTCTTTTAAAAGT.........................................................................................2511.001000001
...........................................................................................TAAAATGGCCGTCATGCAAAAAA..................................................2311.001000001
...................................................CTGCACGGTGGCTCTTTTAA.............................................................................................2011.001100000
...........................................................................................TAAAATGGCCGTCATGCAAAACC..................................................2311.001000001
..................................................TCTGCACGGTGGCTCTTTTATC............................................................................................2211.001000001
...........................................................................................TAAAATGGCCGTCATGCAAAAC...................................................2211.001000001
..................................................TCTGCACGGTGGCTCTTTTAG.............................................................................................2111.001000001

Generated: 10/20/2015 at 06:46 PM