ID:

dmo_617

 Coordinate:

scaffold_6473:561202-561352 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.7 -26.6 -26.4

Flybase annnotation

exon [dmoj_GLEANR_16059:1]; CDS [Dmoj\GI15309-cds]; intron [Dmoj\GI15309-in]

No Repeatable elements found

mature
  1. scaffold_2670:2562-2588 +
  2. scaffold_4152:3402-3428 +
  3. scaffold_4660:3015-3041 +
  4. scaffold_5875:3936-3962 +
  5. scaffold_6117:42113-42139 +
  6. scaffold_6308:1649523-1649549 +
  7. scaffold_6323:35736-35762 +
  8. scaffold_6327:37229-37255 +
  9. scaffold_6427:41509-41535 +
  10. dmo_617  scaffold_6473:561301-561327 +
  11. scaffold_6473:8625432-8625458 +
  12. scaffold_6473:16828214-16828240 +
  13. scaffold_6482:84863-84889 +
  14. scaffold_6498:2923511-2923537 +
  15. scaffold_6500:2185270-2185296 +
  16. scaffold_6500:8736485-8736511 +
  17. scaffold_6540:622117-622143 +
  18. scaffold_6541:819295-819321 +
  19. scaffold_6541:1837426-1837452 +
  20. scaffold_6680:20830054-20830080 +
  21. scaffold_6540:430088-430114 +
  22. scaffold_272:652-678 -
  23. scaffold_1618:1389-1415 -
  24. scaffold_1645:717-743 -
  25. scaffold_1957:13766-13792 -
  26. scaffold_2554:261-287 -
  27. scaffold_3682:4547-4573 -
  28. scaffold_3783:1502-1528 -
  29. scaffold_4341:727-753 -
  30. scaffold_4746:7599-7625 -
  31. scaffold_5002:3039-3065 -
  32. scaffold_6262:66733-66759 -
  33. scaffold_6473:2604532-2604558 -
  34. scaffold_6495:46807-46833 -
  35. scaffold_6496:18865689-18865715 -
  36. scaffold_6496:26559311-26559337 -
  37. scaffold_6500:32110710-32110736 -
  38. scaffold_6540:1435767-1435793 -
  39. scaffold_6540:23092108-23092134 -
  40. scaffold_6540:23450357-23450383 -
  41. scaffold_6540:31811737-31811763 -
  42. scaffold_2148:3988-4014 -
  43. scaffold_3704:1089-1115 -
  44. scaffold_4711:4111-4137 -
  45. scaffold_6498:1723808-1723834 -
  46. scaffold_6500:32245513-32245539 -
  47. scaffold_6541:2364507-2364533 -
  48. scaffold_6680:24167089-24167115 -
star

Sense Strand Reads

------############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAGATAATGCCGGAGACGCTTCAGATAGCCAGAAATAAGTGCTATAAGAGGTAAGCAGTAAAAACACTTTTCGCAATGAACACAGCTATTGATTTACATATCGATGTGACGGTACTATTGTTGTTACCGACAACAAAGGAGTATCCAATTGAGAGAGAGGACTTTCAAAGCCGTACTGATTTAAGATTACCTCAGCAGCAGCCATGTCACTGGTCAACTGCATAGAAATCTACTTCAGTTTTAAAAACTAA
**************************************************.(((((((((.........(((.....)))((((....(((((......)))))))))..((((((.((((((((...))))))))...))))))...(((((((......))))))).....))))).))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V041
embryo
 V110
male body		 V049
head
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTAC........................................................................... 27 0 20 28.95 579 518 58 2 1 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 24 0 20 16.50 330 317 13 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTA............................................................................ 26 0 20 13.50 270 198 68 1 3 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCA............................................... 28 0 10 7.20 72 62 9 0 0 1 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCC................................................ 27 0 10 6.60 66 23 43 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGT............................................................................. 25 0 20 6.25 125 95 30 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGC................................................. 26 0 10 5.90 59 34 24 0 1 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCC............................................................................... 23 0 20 4.10 82 0 82 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGAAATC..................... 26 0 20 1.70 34 0 33 1 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAG.................................................. 25 0 10 1.70 17 14 2 0 1 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCG.............................................................................. 23 0 20 1.60 32 32 0 0 0 0 0
.....................................................................................................................................................TTAGAGAGAGGACTTTCAAAGCCGTA............................................................................ 26 1 20 1.60 32 0 32 0 0 0 0
.....................................................................................................................................................TTAGAGAGAGGACTTTCAAAGCC............................................................................... 23 1 20 1.60 32 0 32 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACCTCAGCAGCAGCC................................................ 27 1 10 1.40 14 0 14 0 0 0 0
..............................................................................................................................................................................................................TCACTGGTCAACTGCATAGAAATCTA................... 26 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGCCA............................................... 27 0 10 1.00 10 10 0 0 0 0 0
..................................................................................................................................................................................................................TGGTCAACTGCATAGAAATCTA................... 22 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTA............................................................................ 25 0 20 0.95 19 19 0 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGAAA....................... 24 0 20 0.90 18 18 0 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGAAAT...................... 25 0 20 0.90 18 14 4 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 25 0 20 0.80 16 16 0 0 0 0 0
..............................................................................................................................................................................................................TCACTGGTCAACTGCATAGAAATCT.................... 25 0 20 0.80 16 16 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGC.................................................... 23 0 10 0.80 8 7 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTACA.......................................................................... 28 1 20 0.80 16 16 0 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACCTCAGCAGCAGC................................................. 26 1 10 0.70 7 0 7 0 0 0 0
.................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGC................................................. 25 0 10 0.60 6 5 1 0 0 0 0
.................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGCC................................................ 26 0 10 0.60 6 5 1 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCA................................................... 24 0 10 0.50 5 5 0 0 0 0 0
............................................................................TGAACACAGCTGCTGGTTTAC.......................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCA............................................... 25 0 10 0.50 5 4 1 0 0 0 0
.................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAG.................................................. 24 0 10 0.40 4 4 0 0 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCATG............................................. 27 0 10 0.40 4 2 2 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCC............................................................................... 24 0 20 0.35 7 1 6 0 0 0 0
............................................................................TGAACACAGCTGTTGGTTT............................................................................................................................................................ 19 2 6 0.33 2 0 0 1 0 0 1
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCC................................................ 24 0 10 0.30 3 1 2 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCA...................................................... 21 0 10 0.30 3 2 1 0 0 0 0
............................................................................................................................................................................................................TTTCACTGGTCAACTGCATAGAAATCT.................... 27 1 20 0.30 6 0 6 0 0 0 0
.....................................................................................................................................................................................TAAGATTACCTCAGCAGCAGCCATG............................................. 25 0 10 0.30 3 2 1 0 0 0 0
.............................................................................................................................................................................................................GTCACTGGTCAACTGCATAGAAATC..................... 25 0 20 0.30 6 6 0 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGTAC........................................................................... 28 0 20 0.30 6 6 0 0 0 0 0
..............................................................................................................................................................................................................TCACTGGTCAACTGCATAGAAATC..................... 24 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................................................................................................CTGATTTAAGATTACCTCAGCAGCAGC................................................. 27 0 10 0.20 2 1 1 0 0 0 0
.........................................................................................................................................................................................ATTACCTCAGCAGCAGCCA............................................... 19 0 10 0.20 2 2 0 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGTA............................................................................ 27 0 20 0.20 4 4 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGGCTTTCAAAGCCG.............................................................................. 24 1 20 0.20 4 4 0 0 0 0 0
.....................................................................................................................................................TTAGAGAGAGGACTTTCAAAGCCG.............................................................................. 24 1 20 0.20 4 0 4 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGA......................... 22 0 20 0.20 4 3 0 0 1 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCAA.............................................. 29 1 10 0.20 2 2 0 0 0 0 0
.............................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCAA................................................................................... 27 0 20 0.15 3 2 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTAA........................................................................... 26 1 20 0.15 3 3 0 0 0 0 0
.............................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCA.................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
............................................................................................................................................................................................ACCTCAGCAGCAGCCATGTCACTGG...................................... 25 0 9 0.11 1 1 0 0 0 0 0
............................................................................................................................................................................................ACCTCAGCAGCAGCCATGTCACTGGT..................................... 26 0 9 0.11 1 0 1 0 0 0 0
.........................................................................................................................................................................GCCGTACTGATTTAAGATTACCTCAGC....................................................... 27 0 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................................................................GTGATTTAAGATTACCTCAGCAGCA................................................... 25 1 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................................................................AAGATTACCTCAGCAGCAGCC................................................ 21 0 10 0.10 1 0 1 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAAC.................................................... 23 1 10 0.10 1 0 1 0 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCAT.............................................. 26 0 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GTCACTGGTCAACTGCATAGAAA....................... 23 0 20 0.10 2 2 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCA............................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
..................................................................................................................................................................................TTTTAAGATTACCTCAGCAGCAGCCA............................................... 26 1 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................................................GACTTTCAAAGCCGTACTGATTTAAGAT................................................................ 28 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGAATACCTCAGCAGCA................................................... 24 1 10 0.10 1 1 0 0 0 0 0
.........................................................................................................................................................................................ATTACCTCAGCAGCAGCC................................................ 18 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGC....................................................... 20 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCA............................................... 24 0 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCA................................................... 23 0 10 0.10 1 1 0 0 0 0 0
..........................................................................................................................................................................................TTACCTCAGCAGCAGCCA............................................... 18 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCATG............................................. 26 0 10 0.10 1 1 0 0 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAG.................................................. 22 0 10 0.10 1 0 0 0 0 1 0
...............................................................................................................................................................................CTGATTTAAGATTACCTCAGCAGCAGCCA............................................... 29 0 10 0.10 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGAA............................................................................ 26 1 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTACTGAT....................................................................... 28 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACCTCAGCAG..................................................... 22 1 10 0.10 1 0 1 0 0 0 0
......................................................................................................................................................................................AAGATTACCTCAGCAGCAGCCAT.............................................. 23 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGC................................................. 22 0 10 0.10 1 0 1 0 0 0 0
................................................................................................................................................................................TGTTTTAAGATTACCTCAGCAGCAGCC................................................ 27 1 10 0.10 1 0 1 0 0 0 0
..................................................................................................................................................................................ATTTAAGATTACCTCAGCAGCAGCCA............................................... 26 0 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTAA........................................................................... 27 1 20 0.10 2 2 0 0 0 0 0
............................................................................TGAACACAGCTGGGGATTT............................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 2
........................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTAC........................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................AGGACTTTCAAAGCCGTAC........................................................................... 19 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCC............................................... 28 1 10 0.10 1 0 1 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACCTCAGCAGCAGCAA............................................... 28 2 10 0.10 1 0 1 0 0 0 0
...................................................................................................................................................................................TGTAAGATTACCTCAGCAGCAGC................................................. 23 1 10 0.10 1 0 1 0 0 0 0
....................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCAT.............................................. 25 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCACCAGCAGCCA............................................... 28 1 10 0.10 1 1 0 0 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGC.................................................... 20 0 10 0.10 1 0 1 0 0 0 0
..........................................................................................................................................................................CCGTACTGATTTAAGATTACCTCAGCAG..................................................... 28 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATGACCTCAGCAGCAG.................................................. 25 1 10 0.10 1 1 0 0 0 0 0
..................................................................................................................................................................................ATTTAAGATTACCTCAGCAGCAGC................................................. 24 0 10 0.10 1 0 1 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACATCAGCAGCAG.................................................. 25 2 10 0.10 1 0 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCC............................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATGACCTCAGCAGCA................................................... 24 1 10 0.10 1 1 0 0 0 0 0
.........................................................................................................................................................................................ATTACCTCAGCAGCAGCCATG............................................. 21 0 10 0.10 1 0 1 0 0 0 0
............................................................................................................................................................................................ACCTCAGCAGCAGCCATG............................................. 18 0 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................................................................TACTGATTTAAGATTACCTCAGCAGCA................................................... 27 0 10 0.10 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGG............................................................................. 25 1 20 0.10 2 0 2 0 0 0 0
..........................................................................................................................................................................CCGTACTGATTTAAGATTACC............................................................ 21 0 10 0.10 1 0 1 0 0 0 0
...................................................................................................................................................................................TGTAAGATTACCTCAGCAGCAGCCA............................................... 25 1 10 0.10 1 0 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTACA.......................................................................... 27 1 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACATCAGCAGCAGCC................................................ 27 1 10 0.10 1 0 1 0 0 0 0
......................................................................................................................................................................................AAGATTACCTCAGCAGCAGCCA............................................... 22 0 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................................................CAAAGCCGTACTGATTTAAGATTACCTC.......................................................... 28 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................TCAAAGCCGTACTGATTTAAGATTACC............................................................ 27 0 10 0.10 1 0 1 0 0 0 0
................................................................................................................................................................................TTATTTAAGATTACCTCAGCAGCAGCCT............................................... 28 2 10 0.10 1 0 1 0 0 0 0
...........................................................................................................................TTACCGACAACAAAGGAGTATCCAATA..................................................................................................... 27 1 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................TTACTTAAGATTACCTCAGCAGCAGC................................................. 26 2 10 0.10 1 0 1 0 0 0 0
.....................................................................................................................................................TGATAGAGAGGACTTTCAAAGCCGTA............................................................................ 26 1 20 0.10 2 1 1 0 0 0 0
.............................................................................................................................................................................TACTGATTTAAGATTACCTCAGCAGC.................................................... 26 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................TGATTTAAGATTACCTCAGCAG..................................................... 22 0 10 0.10 1 0 1 0 0 0 0
...................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCATA............................................. 27 1 11 0.09 1 0 1 0 0 0 0
.......................................................................................................................................................AGAGAGAGGACTTTCAAAGCCG.............................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................CTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................AGAGAGGACTTTCAAAGCCGTAC........................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................GAGAGGACTTTCAAAGCCGTA............................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................CGAGAGAGAGGACTTTCAAAGCCGTA............................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTACT.......................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGCCTTTCAAAGCCGTA............................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................AACAAAGGAGTATCCAATTGAGCGAGA............................................................................................. 27 1 20 0.05 1 0 0 0 0 1 0
...............................................................................................................................................................................................................CACTGGTCAACTGCATAGAAATC..................... 23 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................TACCCAATTGAGAGAGAGGACTTTCAAAA................................................................................. 29 2 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTC............................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAACCGTAC........................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGT............................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCAAA.................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................AAAGGAGTATCCAATTGAGAGAGAGG........................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCACTGGTCAACAGCATAGAAATC..................... 24 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................CTCAGCAGCAGCCATGTCACTGGTCA................................... 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGCGAGAGAGGACTTTCAAAGCC............................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGGGGACTTTCAAAGCCG.............................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................GAGTATCCAATTGAGAGAGAGGACT........................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................................................TGAGAGAGAGGGCTTTCAAAGCCGTAC........................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGTGAGAGGACTTTCAAAGCCGTAC........................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................CGACAACAAAGGAGTATCCAATT..................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................ATTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAATCCG.............................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTACTG......................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................AGAGAGGACTTTCAAAGCCGTACTGAT....................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................TCCAATTGAGAGAGAGGACTT....................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGAATTTCAAAGCCG.............................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................ATGAGAGAGAGGACTTTCAAAGCCGTAC........................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................ACAAAGGAGTATCCAATTGAGAGAGAGG........................................................................................... 28 0 20 0.05 1 0 0 0 0 1 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCAGTAC........................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCGACTGCATAGAAATCT.................... 27 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................ATCCAATTGAGAGAGAGGACT........................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCGAAGCCG.............................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACCTTCAAAGCCG.............................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................AATTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 27 0 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................TTAGAGAGAGGACTTTCAAACCCGTAC........................................................................... 27 2 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAG.......................... 21 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................AAGGAGTATCCAATTGAGAGAGAGG........................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTT............................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................CTCAGCAGCAGCCATGTCACTG....................................... 22 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGA............................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTAAA.......................................................................... 27 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGAAAA...................... 25 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGATGACTTTCAAAGCCGTA............................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................TCCAATTGAGAGAGAGGACT........................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGATAGAGGACTTTCAAAGCCGTAC........................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................CCAATTGAGAGAGAGGACTTTCA.................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................TCAGAGAGAGAGGACTTTCAAAGCC............................................................................... 25 3 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................TCTGAGAGAGAGGACTTTCAAAGCCGT............................................................................. 27 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................TCTCACTGGTCAACTGCATAGAAATCT.................... 27 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................GAGAGAGGACTTTCAAAGCCG.............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCACTGGTCAACTGCATAGAAATCC.................... 27 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................TCAGCAGCAGCCATGTCACTGGTC.................................... 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................ATCTAATTGAGAGAGAGGACT........................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGAC............................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................TTACCGACAACAAAGGAGTATCCAAT...................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCT.............................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGT............................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................GAGGACTTTCAAAGCCGTAC........................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TGACTGGCCAACTGCATAGAAATCT.................... 25 2 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TAAGAGAGAGGACTTTCAAAGCC............................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................TACCGACAACAAAGGAGTATCCAAT...................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGCCTTTCAAAGCCGTAC........................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................GAGAGAGAGGACTTTCAAAGC................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GGTCAACTGCATAGAAATC..................... 19 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................TCCAATTGAGAGAGAGGACTTTCAAAGC................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................................................ACTGGTCAACTGCATAGAAATC..................... 22 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TTAGAGAGAGGACTTTCAAAGAC............................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................TTGAGAGAGAGGACTTTCAAAG................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................TCTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 26 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................TTCAAAGCCGTACTGATTTAAGATT............................................................... 25 0 20 0.05 1 0 0 0 0 1 0
.....................................................................................................................................................TGGGAGAGAGGACTTTCAAAGCCGTA............................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................TAGAGAGAGGACTTTCAAAGCCGTAC........................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................CCAATTGAGAGAGAGGACTTTCAAAG................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................TTCTGAGAGAGAGGACTTTCAAAGCCG.............................................................................. 27 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAGAGAGGACTTTAAAAGCCG.............................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCACTGGTCAAATGCATAGAAATC..................... 24 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................................TGGCACTGGTCAACTGCATAGTAATC..................... 26 2 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................................................................................AGCAGCAGCCATGTCACTGGTCAAC................................. 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................AGAGAGAGGACTTTCAAAGCCGTA............................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................GACAACAAAGGAGTATCCAATTGAGAGA............................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGATAGAGGACTTTCAAAGCCGT............................................................................. 25 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CTCTATTACGGCCTCTGCGAAGTCTATCGGTCTTTATTCACGATATTCTCCATTCGTCATTTTTGTGAAAAGCGTTACTTGTGTCGATAACTAAATGTATAGCTACACTGCCATGATAACAACAATGGCTGTTGTTTCCTCATAGGTTAACTCTCTCTCCTGAAAGTTTCGGCATGACTAAATTCTAATGGAGTCGTCGTCGGTACAGTGACCAGTTGACGTATCTTTAGATGAAGTCAAAATTTTTGATT
**************************************************.(((((((((.........(((.....)))((((....(((((......)))))))))..((((((.((((((((...))))))))...))))))...(((((((......))))))).....))))).))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
........................................................................................................................................TCCTCATAGGTTAACTCTCTCTC............................................................................................ 23 0 20 1.05 21 21 0 0 0
....................................................................................................................................TGTTTCCTCATAGGTTAACTCTCTCTC............................................................................................ 27 0 20 0.65 13 13 0 0 0
...............................................................................................................................................................CTGAAAGTTTCGGCATGACTAAATTCT................................................................. 27 0 20 0.40 8 8 0 0 0
..............................................................TTGTGGAAAGTTTTACTTGTGT....................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0
.............................................................................................................................................................................................GGAGTCGTCGTCGGTACAGTGACCA..................................... 25 0 20 0.25 5 4 1 0 0
..................................................................................................................................................................................................................................TTAGTTGAAGTCATAGTTTTTGA.. 23 3 4 0.25 1 0 0 0 1
......................................................................................................................................TTTCCTCATAGGTTAACTCTCTCTC............................................................................................ 25 0 20 0.25 5 5 0 0 0
..........................................................................................................................................................................................AATGGAGTCGTCGTCGGT............................................... 18 0 10 0.20 2 2 0 0 0
.......................................................................................................................................................................TTCGGCATGACTAAATTCTAATGGAGT......................................................... 27 0 10 0.20 2 2 0 0 0
.........................................................................................................................................................................................TAATGGAGTCGTCGTCGGTACAGT.......................................... 24 0 9 0.11 1 1 0 0 0
........................................................................................................................................................................................................CGGTACAGTGACCAGTTGACGTATC.......................... 25 0 20 0.10 2 2 0 0 0
..................................................................................................................................................................................................CGTCGTCGGTACAGTGACCATT................................... 22 1 20 0.10 2 0 2 0 0
.................................................................................................................................................................GAAAGTTTCGGCATGACTAAATTCTAAT.............................................................. 28 0 10 0.10 1 0 1 0 0
...................................................................................................................................TTGTTTCCTCATAGGTTAACTCTCTCTC............................................................................................ 28 0 20 0.10 2 2 0 0 0
........................................................................................................................................................................TCGGCATGACTAAATTCTAATGGAGTCG....................................................... 28 0 10 0.10 1 1 0 0 0
............................................................................................................................................................................CATGACTAAATTCTAATGGAGTC........................................................ 23 0 10 0.10 1 1 0 0 0
..............................................................................................................................................................CCTGAAAGTTTCGGCATGACTAAAT.................................................................... 25 0 20 0.05 1 0 1 0 0
.........................................................................................................................................CCTCATAGGTTAACTCTCTCGC............................................................................................ 22 1 20 0.05 1 0 1 0 0
..............................................................................................................................................................................................GAGTCGTCGTCGGTACAGTGACCATT................................... 26 1 20 0.05 1 0 1 0 0
.............................................................................................................................................................................................AGAGTCGTCGTCGGTACAGTGACCAGT................................... 27 1 20 0.05 1 1 0 0 0
........................................................................................................................................TCCTCATAGGTTAACTCGC................................................................................................ 19 1 20 0.05 1 0 1 0 0
.................................................................................................................................................................GAAAGTTTCGGCATGACTCAATTCT................................................................. 25 1 20 0.05 1 1 0 0 0
.......................................................................................................................................CTCCTCATAGGTTAACTCTCTCTC............................................................................................ 24 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................TTAAAAGTTTCGGCATGACTAAATTCT................................................................. 27 2 20 0.05 1 1 0 0 0
....................................................................................................................................TGTTTCCTCATAGGTTAACTCTCTCTCG........................................................................................... 28 1 20 0.05 1 1 0 0 0
....................................................................................................................................TGTTTCCTCATAGGTTAACTCTCTCGC............................................................................................ 27 1 20 0.05 1 0 1 0 0
..........................................................................................................................................................CTCTCCTGAAAGTTTCGGCATGACT........................................................................ 25 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................CGTCGTCGGTACAGTGTCCAG.................................... 21 1 20 0.05 1 0 1 0 0
................................................................................................................................................................TGAAAGTTTCGGCATGACTAA...................................................................... 21 0 20 0.05 1 0 0 0 1
................................................................................................................................................................................................GTCGTCGTCGGTACAGTGACCAGT................................... 24 0 20 0.05 1 0 0 1 0
..........................................................................................................................CAATGGCTGTTGTTTCCTCATAGGT........................................................................................................ 25 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:561152-561402 + dmo_617 GAGATAAT-G----------------------CCGGAG----ACG----CTTCAGATAGCCAGA----AATAAGTG-----CTA-----------------------------TAAGAGGTAAGCAGTAAAAACACT-TTTCGCAATGAACACAGCTATTGATTTACATATCGATGTGACGGTACTATTGTTGTTACCGACAACAAAGGAGTATCCAATTGAGAGAGAGGACTTTCAAAGCCGTACTGATTTAAGATTACCTCAGCAGCAGCCATGTCACTGGTCA------------------ACTGCATAGAAATCTACTT---CAGTTTTAAAA----ACTAA
droVir3 scaffold_12936:376525-376639 - CAAAAATG-G----------------------AGGCTC----CAA-------------CTGGC-G---ATT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATTTGTTAAAACT---------GGTGTCAAAATTACTCGAAA------------------GCTGCTTAGGCACGTTATT---CAGTTTTAAGA----ATTGA
droGri2 scaffold_15203:635528-635635 + GAGAGAGA-G----------------------ATGAGAG---A-G-------------------ATAT-CG-GG--G---TAGT--------TGCTAGGTAG---------------------GTTGTTGGAGCAAC-TATTGTTTTTGCTGCCGCTGTTG-----GT----------------------------------------------------------------------TC-----------------------------------------------------TTGGTTGGTCG----------------CTGCTGTGGT-----------TGCCA
droWil2 scf2_1100000004515:20558-20641 + GAGGGAAT-A----------------------ACAGAG----GAT-------------AACGA-----------------CAAA--------TCCTAAACAAACAA-------CCAGTAAAAGTTAAGGCTTTC--------------------------------AA----------------------------------------------------------------------CG-----------------------------------------------------CCAATTTGTTT----------------ACA---TG----------------TC
dp5 XR_group8:1680793-1680903 + GAACTAGT-G----------------------CAAAAA----GAA-------------GAAAG-A---AAA-----AAAAACAAAAAAAAATA--------A----ATAAAAACAAAAA-------------------ACTAGAAATGGAAATGGAAATAGTTTTCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTTGTTG----------------ATACTACA----------------GT
droPer2 scaffold_19:154480-154571 - GGGGTACA-A----------------------TGTGCAAGAAAATTACGAATCGAATAAT----CGAAAA-----------AG-TCGAT---C----AAT-A----TAAA---CAGAATATAGATGTTCGATAATTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------GATA---TG
droAna3 scaffold_12916:12851867-12851937 - CAGAGAGC-G----------------------TGATGT----A--------TTAAGTAAACGAA----GAAGCGTG-----CA------------------------------TAGAAGATTGGCGAAAAAAA-AGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------GCGA---AA
droKik1 scf7180000302685:567306-567363 - GAAATGTT-G----------------------AGAGAG----AAA-------------TAGAG-A---GAG-----AGAGAAAG--------TGCGAAAGAG------------------------------A-GATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------GAAA---GA
droFic1 scf7180000449461:27597-27614 - GAGATAGA-G----------------------AGAGAG----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG
droEle1 scf7180000490214:445105-445159 + TCAACGAA-A----------------------GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTACTTGTCATCTGAGATTGATTTCTTT----------------ACA---AGGT-----------TTTAA
droBia1 scf7180000299393:9001-9058 - GAGAGAGA-G----------------------AGAGAG----AAG-------------GAAAG-A---GAG-----AGATAGAGAAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----GAGAGA---GA---------GA--AAAAA
droTak1 scf7180000415522:8889-8928 + GAGAGAAA-ACTCGGATGGACAGACTTGGGAGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA---GA
droEug1 scf7180000409802:1789836-1789911 - AAAAGAAA-G----------------------ATAGTTGGAATACACTTAGTTAGCTTGG----CAGAAA-----------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTGAAA------------------AA-ACACA-----GACAGT---CA---------GTTA---CA
dm3 chr3RHet:2136594-2136646 - GAGAGAGA-G----------------------AGAGAG----AGC-------------GAGCG-A---GAG----------AG-GGGAGCTTA--------G----ATAA--------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AA--GGTAA
droSim2 x:7172422-7172437 + GAGTGAGT-G----------------------CCGGAG----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_4:1674737-1674816 + GAGACAGC-A----------------------TCGGGG----GCT-------------------CTAT-G----------GGG-ACTAT---C----AACAAGCAG-------CAGAAAGTAGACAACGAAAACACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAG---AA---------AT--GAACA
droYak3 X:17898605-17898675 + GAGAAAAGCG--GG------------------A-AAGC----A--------TTTAGTGGAAAGT----GTTGAGAG-------------------------------------CGGGAGGCAAGTGCTTAAAATTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---CGCA
droEre2 scaffold_4784:18912534-18912576 + GAGAAAGA-G----------------------AGGGAG----AGA-------------AAGAG-A---GAG-----AGAAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------AC--GAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAGATAAT-G----------------------CCGGAG----ACG----CTTCAGATAGCCAGA----AATAAGTG-----CTA-----------------------------TAAGAGGTAAGCAGTAAAAACACT-TTTCGCAATGAACACAGCTATTGATTTACATATCGATGTGACGGTACTATTGTTGTTACCGACAACAAAGGAGTATCCAATTGAGAGAGAGGACTTTCAAAGCCGTACTGATTTAAGATTACCTCAGCAGCAGCCATGTCACTGGTCA------------------ACTGCATAGAAATCTACTT---CAGTTTTAAAA----ACTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTAC....................................................................................................272028.95579518102580
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCG.......................................................................................................242016.50330317000130
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTA.....................................................................................................262013.50270198301680
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCA........................................................................28107.20726200091
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCC.........................................................................27106.606623000430
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGT......................................................................................................25206.2512595000300
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGC..........................................................................26105.905934100240
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCC........................................................................................................23204.10820000820
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGAAATC............................26201.70340001330
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAG...........................................................................25101.70171410020
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCG.......................................................................................................23201.60323200000
....................................................................................................................................................................................................................................................................................TCACTGGTCA------------------ACTGCATAGAAATCTA..........................2611.001000010
.......................................................................................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGCCA........................................................................27101.00101000000
........................................................................................................................................................................................................................................................................................TGGTCA------------------ACTGCATAGAAATCTA..........................2211.001100000
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTA.....................................................................................................25200.95191900000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGAAA..............................24200.90181800000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGAAAT.............................25200.90181400040
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCG.......................................................................................................25200.80161600000
....................................................................................................................................................................................................................................................................................TCACTGGTCA------------------ACTGCATAGAAATCT...........................25200.80161600000
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGC.............................................................................23100.808700010
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTACA...................................................................................................28200.80161600000
.......................................................................................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGC..........................................................................25100.606500010
.......................................................................................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAGCC.........................................................................26100.606500010
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCA............................................................................24100.505500000
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCA........................................................................25100.505400010
.......................................................................................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCAG...........................................................................24100.404400000
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCATG......................................................................27100.404200020
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCC........................................................................................................24200.357100060
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCC.........................................................................24100.303100020
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCA...............................................................................21100.303200010
...........................................................................................................................................................................................................................................................TAAGATTACCTCAGCAGCAGCCATG......................................................................25100.303200010
...................................................................................................................................................................................................................................................................................GTCACTGGTCA------------------ACTGCATAGAAATC............................25200.306600000
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGTAC....................................................................................................28200.306600000
....................................................................................................................................................................................................................................................................................TCACTGGTCA------------------ACTGCATAGAAATC............................24200.255500000
.....................................................................................................................................................................................................................................................CTGATTTAAGATTACCTCAGCAGCAGC..........................................................................27100.202100010
...............................................................................................................................................................................................................................................................ATTACCTCAGCAGCAGCCA........................................................................19100.202200000
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGTA.....................................................................................................27200.204400000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGA................................22200.204310000
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCAA.......................................................................29100.202200000
...................................................................................................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCAA............................................................................................................27200.153200010
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTAA....................................................................................................26200.153300000
...................................................................................................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCA.............................................................................................................26200.153300000
..................................................................................................................................................................................................................................................................ACCTCAGCAGCAGCCATGTCACTGG...............................................................2590.111100000
..................................................................................................................................................................................................................................................................ACCTCAGCAGCAGCCATGTCACTGGT..............................................................2690.111000010
...............................................................................................................................................................................................................................................GCCGTACTGATTTAAGATTACCTCAGC................................................................................27100.101100000
............................................................................................................................................................................................................................................................AAGATTACCTCAGCAGCAGCC.........................................................................21100.101000010
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCAT.......................................................................26100.101100000
...................................................................................................................................................................................................................................................................................GTCACTGGTCA------------------ACTGCATAGAAA..............................23200.102200000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCA........................................................................................................23200.102200000
.....................................................................................................................................................................................................................................GACTTTCAAAGCCGTACTGATTTAAGAT.........................................................................................28200.102200000
...............................................................................................................................................................................................................................................................ATTACCTCAGCAGCAGCC.........................................................................18100.101100000
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGC................................................................................20100.101100000
..........................................................................................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCA........................................................................24100.101100000
.......................................................................................................................................................................................................................................................GATTTAAGATTACCTCAGCAGCA............................................................................23100.101100000
................................................................................................................................................................................................................................................................TTACCTCAGCAGCAGCCA........................................................................18100.101100000
..........................................................................................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCATG......................................................................26100.101100000
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAG...........................................................................22100.101000001
.....................................................................................................................................................................................................................................................CTGATTTAAGATTACCTCAGCAGCAGCCA........................................................................29100.101000010
..............................................................................................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTACTGAT................................................................................................28200.102100010
............................................................................................................................................................................................................................................................AAGATTACCTCAGCAGCAGCCAT.......................................................................23100.101100000
..........................................................................................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGC..........................................................................22100.101000010
........................................................................................................................................................................................................................................................ATTTAAGATTACCTCAGCAGCAGCCA........................................................................26100.101100000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTAA....................................................................................................27200.102200000
..............................................................................................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTAC....................................................................................................24200.102200000
...................................................................................................................................................................................................................................AGGACTTTCAAAGCCGTAC....................................................................................................19200.102200000
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAGCAGCCC........................................................................28100.101000010
..........................................................................................................................................................................................................................................................TTAAGATTACCTCAGCAGCAGCCAT.......................................................................25100.101100000
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGC.............................................................................20100.101000010
................................................................................................................................................................................................................................................CCGTACTGATTTAAGATTACCTCAGCAG..............................................................................28100.101100000
........................................................................................................................................................................................................................................................ATTTAAGATTACCTCAGCAGCAGC..........................................................................24100.101000010
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCC........................................................................................................22200.102200000
...............................................................................................................................................................................................................................................................ATTACCTCAGCAGCAGCCATG......................................................................21100.101000010
..................................................................................................................................................................................................................................................................ACCTCAGCAGCAGCCATG......................................................................18100.101100000
...................................................................................................................................................................................................................................................TACTGATTTAAGATTACCTCAGCAGCA............................................................................27100.101000010
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGG......................................................................................................25200.102000020
................................................................................................................................................................................................................................................CCGTACTGATTTAAGATTACC.....................................................................................21100.101000010
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTACA...................................................................................................27200.102200000
............................................................................................................................................................................................................................................................AAGATTACCTCAGCAGCAGCCA........................................................................22100.101100000
...........................................................................................................................................................................................................................................CAAAGCCGTACTGATTTAAGATTACCTC...................................................................................28100.101100000
..........................................................................................................................................................................................................................................TCAAAGCCGTACTGATTTAAGATTACC.....................................................................................27100.101000010
.................................................................................................................................................................................................TTACCGACAACAAAGGAGTATCCAATA..............................................................................................................................27200.102200000
...................................................................................................................................................................................................................................................TACTGATTTAAGATTACCTCAGCAGC.............................................................................26100.101100000
......................................................................................................................................................................................................................................................TGATTTAAGATTACCTCAGCAG..............................................................................22100.101000010
.........................................................................................................................................................................................................................................................TTTAAGATTACCTCAGCAGCAGCCATA......................................................................27110.091000010
.............................................................................................................................................................................................................................AGAGAGAGGACTTTCAAAGCCG.......................................................................................................22200.051100000
...............................................................................................................................................................................................................................AGAGAGGACTTTCAAAGCCGTAC....................................................................................................23200.051100000
................................................................................................................................................................................................................................GAGAGGACTTTCAAAGCCGTA.....................................................................................................21200.051100000
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTACT...................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................................CACTGGTCA------------------ACTGCATAGAAATC............................23200.051100000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTC.....................................................................................................26200.051100000
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGT......................................................................................................24200.051000010
...................................................................................................................................................................................................................TATCCAATTGAGAGAGAGGACTTTCAAA...........................................................................................................28200.051000010
............................................................................................................................................................................................................AAAGGAGTATCCAATTGAGAGAGAGG....................................................................................................................26200.051100000
....................................................................................................................................................................................................................................................................CTCAGCAGCAGCCATGTCACTGGTCA------------------..........................................26200.051100000
................................................................................................................................................................................................................GAGTATCCAATTGAGAGAGAGGACT.................................................................................................................25200.051010000
.....................................................................................................................................................................................................CGACAACAAAGGAGTATCCAATT..............................................................................................................................23200.051100000
.........................................................................................................................................................................................................................ATTGAGAGAGAGGACTTTCAAAGCCG.......................................................................................................26200.051100000
..............................................................................................................................................................................................................................GAGAGAGGACTTTCAAAGCCGTACTG..................................................................................................26200.051100000
...............................................................................................................................................................................................................................AGAGAGGACTTTCAAAGCCGTACTGAT................................................................................................27200.051000010
.....................................................................................................................................................................................................................TCCAATTGAGAGAGAGGACTT................................................................................................................21200.051000010
..........................................................................................................................................................................................................ACAAAGGAGTATCCAATTGAGAGAGAGG....................................................................................................................28200.051000001
....................................................................................................................................................................................................................ATCCAATTGAGAGAGAGGACT.................................................................................................................21200.051000010
........................................................................................................................................................................................................................AATTGAGAGAGAGGACTTTCAAAGCCG.......................................................................................................27200.051001000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAG.................................21200.051000010
.............................................................................................................................................................................................................AAGGAGTATCCAATTGAGAGAGAGG....................................................................................................................25200.051100000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGTT.....................................................................................................26200.051000010
....................................................................................................................................................................................................................................................................CTCAGCAGCAGCCATGTCACTG................................................................22200.051100000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCGA......................................................................................................25200.051000010
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGCCGTAAA...................................................................................................27200.051100000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGAAAA.............................25200.051100000
.....................................................................................................................................................................................................................TCCAATTGAGAGAGAGGACT.................................................................................................................20200.051000010
......................................................................................................................................................................................................................CCAATTGAGAGAGAGGACTTTCA.............................................................................................................23200.051100000
..............................................................................................................................................................................................................................GAGAGAGGACTTTCAAAGCCG.......................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................TGTCACTGGTCA------------------ACTGCATAGAAATCC...........................27200.051000010
.....................................................................................................................................................................................................................................................................TCAGCAGCAGCCATGTCACTGGTC.............................................................24200.051100000
.................................................................................................................................................................................................TTACCGACAACAAAGGAGTATCCAAT...............................................................................................................................26200.051100000
...........................................................................................................................................................................................................................TGAGAGAGAGGACTTTCAAAGCCT.......................................................................................................24200.051000010
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAGCCGT......................................................................................................26200.051100000
..................................................................................................................................................................................................................................GAGGACTTTCAAAGCCGTAC....................................................................................................20200.051100000
..................................................................................................................................................................................................TACCGACAACAAAGGAGTATCCAAT...............................................................................................................................25200.051100000
............................................................................................................................................................................................................................GAGAGAGAGGACTTTCAAAGC.........................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................................GGTCA------------------ACTGCATAGAAATC............................19200.051100000
.....................................................................................................................................................................................................................TCCAATTGAGAGAGAGGACTTTCAAAGC.........................................................................................................28200.051000010
......................................................................................................................................................................................................................................................................................ACTGGTCA------------------ACTGCATAGAAATC............................22200.051000010
..........................................................................................................................................................................................................................TTGAGAGAGAGGACTTTCAAAG..........................................................................................................22200.051100000
.........................................................................................................................................................................................................................................TTCAAAGCCGTACTGATTTAAGATT........................................................................................25200.051000001
......................................................................................................................................................................................................................CCAATTGAGAGAGAGGACTTTCAAAG..........................................................................................................26200.051100000
.......................................................................................................................................................................................................................................................................AGCAGCAGCCATGTCACTGGTCA------------------AC........................................25200.051100000
.............................................................................................................................................................................................................................AGAGAGAGGACTTTCAAAGCCGTA.....................................................................................................24200.051100000
......................................................................................................................................................................................................GACAACAAAGGAGTATCCAATTGAGAGA........................................................................................................................28200.051100000
droVir3
CAAAAATG-G----------------------AGGCTC----CAA-------------CTGGC-G---ATT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATTTGTTAAAACT---------GGTGTCAAAATTACTCGAAA------------------GCTGCTTAGGCACGTTATT---CAGTTTTAAGA----ATTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................GCTTAGGCACGTTATT---CAGTTTTAAGA----.....2711.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................CT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATTTGTTAAAACT---------GGTGT...........................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
...AAATG-G----------------------AGGCTC----CAA-------------CTGG............................................................................................................................................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AATTACTCGAAA------------------GCTGCTTAGGCAC.............................2520.501000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAAAATTACTCGAAA------------------GCTGCTTAGG................................2520.501001000000000000000000000000000000000000000000000000000000000000
.....................................................................TT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATTT..................................................................................................2690.222000000000000100000000000000100000000000000000000000000000000000
.....................................................................TT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATT...................................................................................................2590.222000000001000100000000000000000000000000000000000000000000000000
.....................................................................TT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTG.......................................................................................................21100.202000000000000000000000000100100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCAAAATTACTCGAAA------------------GCTGCTTAG.................................2550.201000000000000000000000000000000000001000000000000000000000000000
................................................................G---ATT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGT......................................................................................................2490.111000000000000010000000000000000000000000000000000000000000000000
.............................................................................GTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAATTTGTATC...................................................................................................22110.091000000000000000000000000001000000000000000000000000000000000000
.....................................................................TT-----GGTTGGAGACT----------------------------------------------------------------------------------------------------------------------------------------------------CGAAT..........................................................................................................18140.071000000000000000000000000000000000000010000000000000000000000000
droGri2
GAGAGAGA-G----------------------ATGAGAG---A-G-------------------ATAT-CG-GG--G---TAGT--------TGCTAGGTAG---------------------GTTGTTGGAGCAAC-TATTGTTTTTGCTGCCGCTGTTG-----GT----------------------------------------------------------------------TC-----------------------------------------------------TTGGTTGGTCG----------------CTGCTGTGGT-----------TGCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GAGGGAAT-A----------------------ACAGAG----GAT-------------AACGA-----------------CAAA--------TCCTAAACAAACAA-------CCAGTAAAAGTTAAGGCTTTC--------------------------------AA----------------------------------------------------------------------CG-----------------------------------------------------CCAATTTGTTT----------------ACA---TG----------------TCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GAACTAGT-G----------------------CAAAAA----GAA-------------GAAAG-A---AAA-----AAAAACAAAAAAAAATA--------A----ATAAAAACAAAAA-------------------ACTAGAAATGGAAATGGAAATAGTTTTCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTTGTTG----------------ATACTACA----------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
GAACTAGT-G----------------------CAAAAA----GAA-------------GA..............................................................................................................................................................................................................................................................................................2012.0020200000000
..........................................................................................................................................................GAAATAGTTTTCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTTGTTG----------------A.........................2811.0010010000000
..................................................................................................................AAAAA-------------------ACTAGAAATGGAAA..................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................ATAGTTTTCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTT..............................................2011.0010000100000
....................................................................................................................AAA-------------------ACTAGAAATGGAAATG................................................................................................................................................................................................1911.0010100000000
......................................................................................................................A-------------------ACTAGAAATGGAAATGGAAATAGT........................................................................................................................................................................................2511.0010010000000
....................................................................................................................................................................TCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTTGTTG----------------ATACTACA----------------G.2611.0010100000000
..................................................................................................................................................................TTTCGT----------------------------------------------------------------------TG-----------------------------------------------------TTAATTTGTTG----------------ATACTACA----------------GT2911.0010100000000
...............................................................................................................................................AAATGGAAATGGAAATAGT........................................................................................................................................................................................1920.5010100000000
droPer2
GGGGTACA-A----------------------TGTGCAAGAAAATTACGAATCGAATAAT----CGAAAA-----------AG-TCGAT---C----AAT-A----TAAA---CAGAATATAGATGTTCGATAATTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------GATA---TGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CAGAGAGC-G----------------------TGATGT----A--------TTAAGTAAACGAA----GAAGCGTG-----CA------------------------------TAGAAGATTGGCGAAAAAAA-AGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------GCGA---AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droKik1
GAAATGTT-G----------------------AGAGAG----AAA-------------TAGAG-A---GAG-----AGAGAAAG--------TGCGAAAGAG------------------------------A-GATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------GAAA---GASizeHit CountTotal NormTotal
No Reads
droFic1
GAGATAGA-G----------------------AGAGAG----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGSizeHit CountTotal NormTotal
No Reads
droEle1
TCAACGAA-A----------------------GCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTACTTGTCATCTGAGATTGATTTCTTT----------------ACA---AGGT-----------TTTAASizeHit CountTotal NormTotal
No Reads
droBia1
GAGAGAGA-G----------------------AGAGAG----AAG-------------GAAAG-A---GAG-----AGATAGAGAAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----GAGAGA---GA---------GA--AAAAASizeHit CountTotal NormTotal
No Reads
droTak1
GAGAGAAA-ACTCGGATGGACAGACTTGGGAGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA---GASizeHit CountTotal NormTotal
No Reads
droEug1
AAAAGAAA-G----------------------ATAGTTGGAATACACTTAGTTAGCTTGG----CAGAAA-----------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTGAAA------------------AA-ACACA-----GACAGT---CA---------GTTA---CASizeHit CountTotal NormTotal
No Reads
dm3
GAGAGAGA-G----------------------AGAGAG----AGC-------------GAGCG-A---GAG----------AG-GGGAGCTTA--------G----ATAA--------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AA--GGTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................AGAG----AGC-------------GAGCG-A---GAG----------AG-GGG...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......A-G----------------------AGAGAG----AGC-------------GAGCG-A---GAG----------A........................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................AG----------AG-GGGAGCTTA--------G----ATAA--------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................C-------------GAGCG-A---GAG----------AG-GGGAGCGAC--------.....................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................GAGAG----AGC-------------GAGCG-A---GAG----------A........................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......GA-G----------------------AGAGAG----AGC-------------GAGCG-A---G.....................................................................................................................................................................................................................................................................................19150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........G----------------------AGAGAG----AGC-------------GAGCG-A---GA....................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
GAGAGAGA-G----------------------AGAGAG----AGC-------------GAGCG-..........................................................................................................................................................................................................................................................................................23130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
GAGAGAGA-G----------------------AGAGAG----AGC-------------GAGC............................................................................................................................................................................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGAGAGA-G----------------------AGAGAG----AGC-------------GAG.............................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGAGAGA-G----------------------AGAGAG----AGC-------------................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAGAGA-G----------------------AGAGAG----AGC-------------GAGC............................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
GAGTGAGT-G----------------------CCGGAG----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GAGACAGC-A----------------------TCGGGG----GCT-------------------CTAT-G----------GGG-ACTAT---C----AACAAGCAG-------CAGAAAGTAGACAACGAAAACACCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAG---AA---------AT--GAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAGAAAAGCG--GG------------------A-AAGC----A--------TTTAGTGGAAAGT----GTTGAGAG-------------------------------------CGGGAGGCAAGTGCTTAAAATTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---CGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GAGAAAGA-G----------------------AGGGAG----AGA-------------AAGAG-A---GAG-----AGAAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------AC--GAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:43 PM