ID:

dmo_61

 Coordinate:

scaffold_6308:1308803-1308864 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-28.5 -28.5 -28.5

Flybase annnotation

intergenic

No Repeatable elements found

mature

  1. dmo_61  scaffold_6308:1308803-1308824 +
  2. dmo_38  scaffold_6308:1309091-1309112 +
star

Sense Strand Reads

ATCTAAGTTAAATCATGTATATAGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAATACGTTTATTTATCGGTTTTAAGTAGGTTATAGACCGCTGACAAAATGCTTTACTTTGCAACAGGAAAATCGGAAAAACTATCAACTATG

***********************************..((((.((((((((.(((..((((((((((...(((..((.........))..)))...))))))))))..))).))).))))).)))).************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 M060

embryo

 V049

head

 V056

head

 V041

embryo
..................................................TGCGAGCTATAACCTAGTGGAA.......................................................................................... 22 0 2 202.50 405 362 19 8 3 5 8
..................................................TGCGAGCTATAACCTAGTGGA........................................................................................... 21 0 4 46.25 185 155 16 6 3 5 0
...........................................................................................TAAGTAGGTTATAGACCGCT................................................... 20 0 1 46.00 46 38 4 2 0 2 0
..........................................................................................TTAAGTAGGTTATAGACCGCT................................................... 21 0 1 44.00 44 36 6 0 1 1 0
..................................................TGCGAGCTATAACCTAGTGGAAA......................................................................................... 23 1 2 13.50 27 22 3 1 0 1 0
...........................................................................................TAAGTAGGTTATAGACCGCTG.................................................. 21 0 1 13.00 13 9 2 0 2 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTGA................................................. 22 0 1 9.00 9 6 0 0 1 1 1
..........................................................................................TTAAGTAGGTTATAGACCG..................................................... 19 0 1 8.00 8 6 1 0 0 1 0
..................................................TGCGAGCTATAACCTAGTGGAC.......................................................................................... 22 1 4 7.25 29 27 0 2 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATACG...................................................................................... 26 0 2 5.50 11 10 0 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGGAAC......................................................................................... 23 1 2 5.00 10 9 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGG............................................................................................ 20 0 4 4.50 18 15 3 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACC......................................................................................... 23 2 4 4.25 17 15 1 0 0 1 0
..........................................................................................TTAAGTAGGTTATAGACCGCTGA................................................. 23 0 1 4.00 4 3 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATACGTT.................................................................................... 28 0 2 4.00 8 8 0 0 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGCTT.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGC.................................................... 20 0 1 3.00 3 3 0 0 0 0 0
...................................................GCGAGCTATAACCTAGTGGAA.......................................................................................... 21 0 2 2.00 4 1 3 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAAAA........................................................................................ 24 1 2 2.00 4 4 0 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGAA.......................................................................................... 22 1 2 2.00 4 0 0 4 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGCTG.................................................. 22 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................TAAGGAGGTTATAGACCGCTGA................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTG............................................................................................. 19 0 5 1.80 9 7 1 0 1 0 0
.................................................TTGCGAGCTATAACCTAGTGGAA.......................................................................................... 23 0 2 1.50 3 3 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAT.......................................................................................... 22 1 4 1.50 6 6 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAACC........................................................................................ 24 2 2 1.50 3 3 0 0 0 0 0
.................................................TTGCGAGCTATAACCTAGTGGA........................................................................................... 22 0 4 1.25 5 4 0 0 0 1 0
..................................................TGAGAGCTATAACCTAGTGGAA.......................................................................................... 22 1 2 1.00 2 1 0 1 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTTT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAGTAGGTTATATACCGCTG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCAGTAGGTTATAGACCGCT................................................... 20 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TAAGTAGGTTATAGACCGTA................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGCTA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGCC................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TAAGAAGGTTATAGACCGCT................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................AGTAGGTTATAGACCGCTGA................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTGATG............................................... 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTTTTAAGTAGGTTATAGACCG..................................................... 22 0 1 1.00 1 0 0 0 0 0 1
..................................................TGCGAGCTATAGCCTAGTGGAA.......................................................................................... 22 1 2 1.00 2 0 0 0 1 1 0
..........................................................................................TTAAGTAGGTTATACACCGCT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTT.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATACGTC.................................................................................... 28 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGC.................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAAT......................................................................................... 23 0 2 1.00 2 1 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTTGAA.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTGATC............................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTAAGTAGGTTATAGACCGCTG.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAAG......................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................TAAGTAGGTTATATACCGCT................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAAGTAGGTTATAGACCGCTGAA................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATAG....................................................................................... 25 1 2 1.00 2 2 0 0 0 0 0
..........................................................................................TTAAGTAGGTTATAGACCGCTGTTA............................................... 25 2 1 1.00 1 1 0 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAG............................................................................................... 21 0 5 0.80 4 4 0 0 0 0 0
...................................................................................................TTATAGACCGCTGACAAAATGC......................................... 22 0 3 0.67 2 0 0 2 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGTG............................................................................................. 23 0 5 0.60 3 2 0 0 0 0 1
...................................................TCGAGCTATAACCTAGTGGAAA......................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
...................................................GCGAGCTATAACCTAGTGGAAG......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTATTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGATATAACCTAGCGGGA.......................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0
........................................................................TACGTTTATTTATCGGTTTTAAG................................................................... 23 0 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATAT..................................................................................... 27 3 4 0.50 2 2 0 0 0 0 0
..................................................TGCGAGCTGTAACCTAGTGGAAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCCATAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAAAACC...................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGTTATAACCTAGTGGAATACG...................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATAT....................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.50 2 1 0 1 0 0 0
....................................................CGAGCTATAACCTAGTGGAA.......................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
........................................................................TACGTTTATTTATCGGTTTTAAGTCC................................................................ 26 2 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAGCCTAGTGGAAAAA....................................................................................... 25 3 2 0.50 1 0 0 0 0 1 0
..................................................TGCCAGCTATAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGATCTATAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTATGGGAA.......................................................................................... 22 2 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTTTAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
........................................................................TACGTTTATTTATCGGTTTTAAGTAG................................................................ 26 0 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATGACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAATA........................................................................................ 24 0 2 0.50 1 0 0 0 0 0 1
..................................................TGCGAGCTATAACCTAGTGGAAGT........................................................................................ 24 2 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGGCA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCTAGCTATAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0
..................................................TGCGGGCTATAACCTAGTGGAA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGATATAACCTAGTGGAAA......................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGAAA......................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
..................ATATGGCAACAATCTAACTT............................................................................................................................ 20 3 20 0.45 9 0 9 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGTC............................................................................................. 23 1 5 0.40 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGTAATACG...................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
........................................................................TACGTTTATTTATCGGTTTC...................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGCAA.......................................................................................... 22 1 3 0.33 1 0 0 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGTAA.......................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
..................................................TACGAGCTATAACCTAGTGTAAAA........................................................................................ 24 3 3 0.33 1 0 0 0 1 0 0
..................................................TGCTAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGC........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGATCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGTC.......................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGT........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACT......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
.................................................TTGCGAGCTATAACCTAGTGG............................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTTTAACCTAGTGGACC......................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGTTT......................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACA......................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
..................................................TGAGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 0 0 1 0 0 0
.................................................TTGCGAGCTATAACCTGGTGGA........................................................................................... 22 1 4 0.25 1 0 0 0 1 0 0
..................................................TACGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGATT......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
..................ATATGGCAACAATCTAACTTA........................................................................................................................... 21 3 14 0.21 3 1 2 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGT.............................................................................................. 22 0 5 0.20 1 0 0 1 0 0 0
.................................................TTGCGAGCTATAACCTAGTG............................................................................................. 20 0 5 0.20 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTCGTGTA........................................................................................... 21 2 5 0.20 1 0 0 0 1 0 0
..................................................TTCGAGCTATAACCTAGT.............................................................................................. 18 1 5 0.20 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTGGAG............................................................................................. 19 2 5 0.20 1 1 0 0 0 0 0

Anti-sense strand reads

TAGATTCAATTTAGTACATATATCGTTTTTAGATTCAATTTAGTAAACAAACGCTCGATATTGGATCACCTTATGCAAATAAATAGCCAAAATTCATCCAATATCTGGCGACTGTTTTACGAAATGAAACGTTGTCCTTTTAGCCTTTTTGATAGTTGATAC

************************************..((((.((((((((.(((..((((((((((...(((..((.........))..)))...))))))))))..))).))).))))).)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 M046

female body

 V110

male body
..................TATACCGTTGTTAGATTGAAT........................................................................................................................... 21 3 14 0.29 4 1 2 1
..............................AGATTCAATTTGGTAAGC.................................................................................................................. 18 2 9 0.11 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1308753-1308914 + dmo_61 confident ATCTAAGTTAAATCATGTATATAGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAATACGTTTATTTATCGGTTTTAAGTAGGTTATAGACCGCTGACAAAATGCTTTACTTTGCAACAGGAAAATCGGAAAAACTATCAACTATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATCTAAGTTAAATCATGTATATAGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAATACGTTTATTTATCGGTTTTAAGTAGGTTATAGACCGCTGACAAAATGCTTTACTTTGCAACAGGAAAATCGGAAAAACTATCAACTATGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................TGCGAGCTATAACCTAGTGGAA..........................................................................................222202.50405198358362
..................................................TGCGAGCTATAACCTAGTGGA...........................................................................................21446.25185160356155
...........................................................................................TAAGTAGGTTATAGACCGCT...................................................20146.00464002238
..........................................................................................TTAAGTAGGTTATAGACCGCT...................................................21144.00446011036
..................................................TGCGAGCTATAACCTAGTGGAAA.........................................................................................23213.50273001122
...........................................................................................TAAGTAGGTTATAGACCGCTG..................................................21113.0013202009
...........................................................................................TAAGTAGGTTATAGACCGCTGA.................................................2219.009011106
..........................................................................................TTAAGTAGGTTATAGACCG.....................................................1918.008100106
..................................................TGCGAGCTATAACCTAGTGGAC..........................................................................................2247.25290000227
..................................................TGCGAGCTATAACCTAGTGGAATACG......................................................................................2625.50110010010
..................................................TGCGAGCTATAACCTAGTGGAAC.........................................................................................2325.0010100009
..................................................TGCGAGCTATAACCTAGTGG............................................................................................2044.50183000015
..................................................TGCGAGCTATAACCTAGTGGACC.........................................................................................2344.25171001015
..........................................................................................TTAAGTAGGTTATAGACCGCTGA.................................................2314.004000013
..................................................TGCGAGCTATAACCTAGTGGAATACGTT....................................................................................2824.008000008
..........................................................................................TTAAGTAGGTTATAGACCGCTT..................................................2213.003000003
..........................................................................................TTAAGTAGGTTATAGACCGC....................................................2013.003000003
...................................................GCGAGCTATAACCTAGTGGAA..........................................................................................2122.004300001
..........................................................................................TTAAGTAGGTTATAGACCGCTG..................................................2212.002000002
..................................................TGCGAGCTATAACCTAGTG.............................................................................................1951.809101007
.................................................TTGCGAGCTATAACCTAGTGGAA..........................................................................................2321.503000003
..................................................TGCGAGCTATAACCTAGTGGAT..........................................................................................2241.506000006
..................................................TGCGAGCTATAACCTAGTGGAACC........................................................................................2421.503000003
.................................................TTGCGAGCTATAACCTAGTGGA...........................................................................................2241.255000104
...........................................................................................TAAGTAGGTTATAGACCGCTTT.................................................2211.001000001
...........................................................................................TAAGTAGGTTATAGACCGTA...................................................2011.001000001
..........................................................................................TTAAGTAGGTTATAGACCGCTA..................................................2211.001000001
..........................................................................................TTAAGTAGGTTATAGACCGCC...................................................2111.001000010
.............................................................................................AGTAGGTTATAGACCGCTGA.................................................2011.001000001
...........................................................................................TAAGTAGGTTATAGACCGCTGATG...............................................2411.001000001
.......................................................................................GTTTTAAGTAGGTTATAGACCG.....................................................2211.001010000
...........................................................................................TAAGTAGGTTATAGACCGCTT..................................................2111.001000001
..................................................TGCGAGCTATAACCTAGTGGAATACGTC....................................................................................2821.002000002
...........................................................................................TAAGTAGGTTATAGACCGC....................................................1911.001100000
..................................................TGCGAGCTATAACCTAGTGGAAT.........................................................................................2321.002100001
...........................................................................................TAAGTAGGTTATAGACCGCTGATC...............................................2411.001000001
..................................................TGCGAGCTATAACCTAGTGGAAG.........................................................................................2321.002000002
...........................................................................................TAAGTAGGTTATAGACCGCTGAA................................................2311.001000001
..................................................TGCGAGCTATAACCTAGTGGAATAG.......................................................................................2521.002000002
..............................................TGTTTGCGAGCTATAACCTAG...............................................................................................2150.804000004
...................................................................................................TTATAGACCGCTGACAAAATGC.........................................2230.672000020
..............................................TGTTTGCGAGCTATAACCTAGTG.............................................................................................2350.603010002
...................................................GCGAGCTATAACCTAGTGGAAG.........................................................................................2220.501100000
........................................................................TACGTTTATTTATCGGTTTTAAG...................................................................2320.501100000
..................................................TGCGAGCTATAACCTAGTGGAATAT.......................................................................................2520.501000001
....................................................CGAGCTATAACCTAGTGGAA..........................................................................................2020.501000001
........................................................................TACGTTTATTTATCGGTTTTAAGTCC................................................................2620.501000001
........................................................................TACGTTTATTTATCGGTTTTAAGTAG................................................................2620.501000001
..................................................TGCGAGCTATAACCTAGTGGAATA........................................................................................2420.501010000
..................................................TGCGAGCTATAACCTAGTGGAAGT........................................................................................2420.501001000
..............................................TGTTTGCGAGCTATAACCTAGTC.............................................................................................2350.402000002
........................................................................TACGTTTATTTATCGGTTTC......................................................................2030.331000001
..................................................TGCGAGCTATAACCTAGTGGC...........................................................................................2140.251000001
..................................................TGCGAGCTATAACCTAGTGGTC..........................................................................................2240.251000001
..................................................TGCGAGCTATAACCTAGTGGT...........................................................................................2140.251000001
.................................................TTGCGAGCTATAACCTAGTGG............................................................................................2140.251000001
..................................................TGCGAGCTATAACCTAGTGGACA.........................................................................................2340.251000001
..............................................TGTTTGCGAGCTATAACCTAGT..............................................................................................2250.201000010
.................................................TTGCGAGCTATAACCTAGTG.............................................................................................2050.201100000

Generated: 10/20/2015 at 06:50 PM