ID:

dmo_605

 Coordinate:

scaffold_6454:31924-32074 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-24.9 -24.8 -24.8

Flybase annnotation

CDS [Dmoj\GI14147-cds]; exon [dmoj_GLEANR_14294:1]; intron [Dmoj\GI14147-in]

No Repeatable elements found

mature
  1. scaffold_6353:42615-42638 +
  2. dmo_605  scaffold_6454:31995-32018 +
  3. scaffold_6496:26690060-26690083 +
  4. scaffold_6496:26701854-26701877 +
star

Sense Strand Reads

---------------------#############################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGACAAGACCAAAATTAGAATATGGACAGTGACGCGGACAGGCCTCGCCGGTAAGCCGACGGGAATTAGATTCTCGCGATATTTATTTTTTTTTTGTGTGCGCAGTTCTTTGTTTTGCTTTTATCATGTCACCAAGTGCCTTGTAGTGGGGAATATTCGTGAAACAGCTAATTTAAGTTTGTTTTTTAAAAGAAGAAAATAATAATGAAATAAATGGAATAATATAATAATGAACGAAGTTGTGGATAGTT
**************************************************......((.(((((((...))))))))).....((((((((((((......((((..(((......(((.((.(((((((.(((..(((...))).))).)).....))))))).)))......))).)))).......))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
 V049
head
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGTTG......... 26 0 4 1.50 6 6 0 0 0 0
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTA.......................................................................................................... 24 0 4 0.75 3 3 0 0 0 0
............AATTAGAATATGGACAGTGACGC........................................................................................................................................................................................................................ 23 0 4 0.50 2 2 0 0 0 0
.............................................................................................................................ATGTCACCAAGTGCCTTGTAGT........................................................................................................ 22 0 4 0.50 2 2 0 0 0 0
..............TTAGAATATGGACAGTGACGC........................................................................................................................................................................................................................ 21 0 4 0.50 2 1 0 1 0 0
.........................................................................................................................TATCATGTCACCAAGTGCCTTGT........................................................................................................... 23 0 4 0.50 2 2 0 0 0 0
....................................................................................................................................................................................................................AATGGAATAATATAATAATGAACGAAG............ 27 0 4 0.50 2 2 0 0 0 0
............AATTAGAATATGGACAGTGACGCGG...................................................................................................................................................................................................................... 25 0 4 0.50 2 2 0 0 0 0
.....................ATGGACAGTGACGCGGACAGG................................................................................................................................................................................................................. 21 0 16 0.44 7 5 2 0 0 0
......................TGGACAGTGACGCGGACAGGCT............................................................................................................................................................................................................... 22 1 3 0.33 1 0 0 1 0 0
............AATTAGAATATGGACAGTGACGCG....................................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
............AATTAGAATATGGACAGTGACGCGGA..................................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 1 0 0
.........................................................................................................................................................................................ATAAAAGCAGAAAATAATAAT............................................. 21 2 20 0.25 5 4 0 1 0 0
......................................................................................................................................................................................................................TGGAATAATATAATAATGAACGAA............. 24 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................................................................AATATAATAATGAACGAAGTTGTGGAT.... 27 0 4 0.25 1 1 0 0 0 0
......................TGGACAGTGACGCGCACAGGC................................................................................................................................................................................................................ 21 1 4 0.25 1 0 1 0 0 0
......................TGGACAGTGACGCGGACAGG................................................................................................................................................................................................................. 20 0 16 0.25 4 4 0 0 0 0
....................................................................................................................GGTTTTATCATGTCACCAAGTGC................................................................................................................ 23 1 4 0.25 1 0 1 0 0 0
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTAG......................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTAGC........................................................................................................ 26 1 4 0.25 1 1 0 0 0 0
.......................................................................................................................TTTATCATGTCACCAAGTGCC............................................................................................................... 21 0 4 0.25 1 0 1 0 0 0
......................................................................................................................................................................................................................TTGAATAATATAATAATGAACGAAG............ 25 1 4 0.25 1 0 1 0 0 0
.........................................................................................................................TGTCATGTCACCAAGTGCCTTGC........................................................................................................... 23 2 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGTT.......... 25 0 4 0.25 1 0 1 0 0 0
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAG............ 23 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................................................AATAATATAATAATGAACGAAGTT.......... 24 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGT........... 24 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................TTTATCATGTCACCAAGTGCCTTGTAG......................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
..............TTAGAATATGGACAGTGACGCGGAC.................................................................................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0
...........................................................................................................................................................................................AAAAGCAGAAAATAATAAT............................................. 19 1 15 0.20 3 3 0 0 0 0
..........................................................................................................................................................................................TAAAAGCAGAAAATAATAAT............................................. 20 1 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................................................ATAATAATGAACGAAGGT.......... 18 1 5 0.20 1 1 0 0 0 0
.....................................................................................................................................ATCTGCCTGGTAGTGGGG.................................................................................................... 18 3 20 0.15 3 0 0 0 2 1
.....................AGGGACAGTGACGCGGACAGG................................................................................................................................................................................................................. 21 1 16 0.13 2 0 2 0 0 0
..............................................................................................................................................................GTGAATCCGGTAATTTAAGT......................................................................... 20 3 8 0.13 1 0 0 1 0 0
.................................................................................................................................................GTGGGGAATATTCGACAA........................................................................................ 18 2 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................................................TAAAAGCAGAAAATAATA............................................... 18 1 12 0.08 1 1 0 0 0 0
..............................................................................................................................................GCAGTGGGGAATATTGGT........................................................................................... 18 2 14 0.07 1 1 0 0 0 0
.........................................................................TCGCGATATTCATTTTCT................................................................................................................................................................ 18 2 15 0.07 1 1 0 0 0 0
......................TGGACAGTGACGCGGACAGGT................................................................................................................................................................................................................ 21 1 16 0.06 1 1 0 0 0 0
.....................ATGTACAGTGACGCGGACAGG................................................................................................................................................................................................................. 21 1 16 0.06 1 0 1 0 0 0
.....................ATGGACAGTGACGCGGACAG.................................................................................................................................................................................................................. 20 0 17 0.06 1 1 0 0 0 0
......................TGGACAGTGACGCGGACAG.................................................................................................................................................................................................................. 19 0 17 0.06 1 1 0 0 0 0
.........AAAGAATAGAATATGGACAGT............................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0 0
...................................................................................................................................................GGTGAATATTCCTGAACC...................................................................................... 18 3 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................................AACGAACTTGGGGATAGCT 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CCTGTTCTGGTTTTAATCTTATACCTGTCACTGCGCCTGTCCGGAGCGGCCATTCGGCTGCCCTTAATCTAAGAGCGCTATAAATAAAAAAAAAACACACGCGTCAAGAAACAAAACGAAAATAGTACAGTGGTTCACGGAACATCACCCCTTATAAGCACTTTGTCGATTAAATTCAAACAAAAAATTTTCTTCTTTTATTATTACTTTATTTACCTTATTATATTATTACTTGCTTCAACACCTATCAA
**************************************************......((.(((((((...))))))))).....((((((((((((......((((..(((......(((.((.(((((((.(((..(((...))).))).)).....))))))).)))......))).)))).......))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V110
male body
......CTGGTTTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 26 0 4 18.00 72 55 17 0 0
......CTGGTTTTAATCTTATACCTGTCAC............................................................................................................................................................................................................................ 25 0 4 8.75 35 26 9 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTATAT......................... 26 0 4 5.00 20 3 17 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATT............................. 25 0 4 2.75 11 1 10 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATTAT........................... 27 0 4 2.50 10 3 7 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTAT........................... 25 0 4 2.25 9 2 7 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTATAT......................... 27 0 4 2.00 8 2 6 0 0
......................................................CGGCTGCCCTTAATCTAAGAGCCCT............................................................................................................................................................................ 25 1 4 2.00 8 0 8 0 0
.........................................................................................................................................................................................................TATTACTTTATTTACCTTATTATAT......................... 25 0 4 1.75 7 6 1 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTAT........................... 24 0 4 1.75 7 1 6 0 0
........GGTTTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 24 0 4 1.50 6 6 0 0 0
...GTTCTGGTTTTAATCTTATACCTGTCAC............................................................................................................................................................................................................................ 28 0 4 1.50 6 6 0 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATTATAT......................... 29 0 4 1.25 5 0 5 0 0
.....TCTGGTTTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 27 0 4 1.00 4 4 0 0 0
......................................................................................................................................................................................................TATTATTACTTTATTTACCTTATTATAT......................... 28 0 4 1.00 4 3 1 0 0
.....TCTGGTTTTAATCTTATACCTGTCAC............................................................................................................................................................................................................................ 26 0 4 1.00 4 3 1 0 0
......................................................................................................................................................................................................TATTATTACTTTATTTACCTTATTAT........................... 26 0 4 1.00 4 4 0 0 0
.....................................................CCGGCTGCCCTTAATCTAAGAGCCCT............................................................................................................................................................................ 26 2 4 0.75 3 0 3 0 0
.....................................................TCGGCTGCCCTTAATCTAA................................................................................................................................................................................... 19 0 4 0.75 3 0 3 0 0
......CTGGTTTTAATCTTATACCTGTTACT........................................................................................................................................................................................................................... 26 1 4 0.75 3 0 3 0 0
......CTGGTTTTAATCTTATACCTTTCACT........................................................................................................................................................................................................................... 26 1 4 0.50 2 0 2 0 0
.......TGGTTTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 25 0 4 0.50 2 2 0 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATTACAT......................... 29 1 4 0.50 2 0 2 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTA............................ 24 0 4 0.50 2 1 1 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTTTAT......................... 26 1 4 0.50 2 0 2 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTATGT......................... 27 1 4 0.50 2 0 2 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTAT.............................. 24 0 4 0.50 2 2 0 0 0
......CTGGTTTTAATCTTATACCTGTCA............................................................................................................................................................................................................................. 24 0 4 0.50 2 2 0 0 0
.................................................................................................................................................................................................TCTTTTATTATTACTTTATTTACCTTAT.............................. 28 0 4 0.50 2 2 0 0 0
......................................................................................AAAAAAAAACACACGCGTCAAGAAAC........................................................................................................................................... 26 0 4 0.25 1 1 0 0 0
.........................................................................................AAAAAACACACGCGTCAAGAAACAAA........................................................................................................................................ 26 0 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTATATT........................ 27 0 4 0.25 1 0 1 0 0
.........................................................................................................................................................................................................TATTACTTTATTTACCTTATTACAT......................... 25 1 4 0.25 1 0 1 0 0
......CTGGTTTAAATCTTATACCTGTCAC............................................................................................................................................................................................................................ 25 1 4 0.25 1 1 0 0 0
.......CGGTTTTAATCTTATACCTGTCAGT........................................................................................................................................................................................................................... 25 2 4 0.25 1 0 1 0 0
.....................................................TCGGCTGCCCTTAATCTAAGA................................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................TTCTTCTTTTATTATTACTTTATT...................................... 24 0 4 0.25 1 1 0 0 0
...........TTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................TATATTATTACTTGCTTCAACACCT..... 25 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATTATAC......................... 29 1 4 0.25 1 0 1 0 0
...........TTTAATCTTATACCTGTGACTGCGCCTGT................................................................................................................................................................................................................... 29 1 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................TATTATATTATTACTTGCTTCAACAC....... 26 0 4 0.25 1 1 0 0 0
.....................................................TCGGCTGCCCTTAATCTAAGAG................................................................................................................................................................................ 22 0 4 0.25 1 1 0 0 0
............................................................................................................................GTACAGTGGTTCACGGAACATCAC....................................................................................................... 24 0 4 0.25 1 1 0 0 0
......CTGGTTTTAATCTTGTACCTGTCACT........................................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0
......CAGGTTTTAATCTTATACCTGTCAC............................................................................................................................................................................................................................ 25 1 4 0.25 1 0 1 0 0
......................................................CGGCTGCCCTTAATCTAAGAGC............................................................................................................................................................................... 22 0 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCTGTCGC............................................................................................................................................................................................................................ 25 1 4 0.25 1 0 1 0 0
...........................................GAGCGGCCATTCGGCTGCCCTTAATCT..................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTGTGT......................... 27 2 4 0.25 1 0 1 0 0
.........................................................................................................................................................................................................TATTACTTTATTTGCCTTATTATAT......................... 25 1 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................ATATTACTTTATTTACCTTATTAT........................... 24 1 4 0.25 1 0 1 0 0
.................................................CCATTCGGCTGCCCTTAATCTAAGAG................................................................................................................................................................................ 26 0 4 0.25 1 0 1 0 0
......................................................CGGCTGCCCTTAATCTAAGA................................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0
.....................................................CCGGCTGCCCTTAATCTAAGAGCACT............................................................................................................................................................................ 26 2 4 0.25 1 0 1 0 0
.......................................................................................................................................CACGGAACATCACCCCTTATAACT............................................................................................ 24 2 4 0.25 1 0 1 0 0
..................................................................................................................................................................................................................................TATTACTTGCTTCAACACCTATCA. 24 0 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................CTATATTATTACTTGCTTCAACACCT..... 26 1 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTGT........................... 24 1 4 0.25 1 0 1 0 0
.........................................................................................................................................................................................................TATTACTTTATTTACCTTATTATA.......................... 24 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTCCCTTATTATAT......................... 27 1 4 0.25 1 1 0 0 0
......................................................CGGCTGCCCTTAATCTACGAGCCCT............................................................................................................................................................................ 25 2 4 0.25 1 0 1 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTACTAT........................... 24 1 4 0.25 1 0 1 0 0
......CGGGTTTTAATCTTATACCTGTCATT........................................................................................................................................................................................................................... 26 2 4 0.25 1 0 1 0 0
....................................................................................................................................................................................................................................TTACTTGCTTCAACACCTATC.. 21 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTCCCTTATT............................. 25 1 4 0.25 1 0 1 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTCTT............................. 25 1 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACATGTCACT........................................................................................................................................................................................................................... 26 1 4 0.25 1 0 1 0 0
...GTTCTGGTTTTAATCTTATACCTGTCACT........................................................................................................................................................................................................................... 29 0 4 0.25 1 1 0 0 0
.....................................................CCGGCTGCCCTTAATCTAA................................................................................................................................................................................... 19 1 4 0.25 1 0 1 0 0
...............................................................................................CACACGCGTCAAGAAACAAAA....................................................................................................................................... 21 0 4 0.25 1 0 1 0 0
......................................................CGGCTGCCCTTAATCTAAGAG................................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0
....................................................................................................................................................................................................................................TTACTTGCTTCAACACCTATCAA 23 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATCAT........................... 25 1 4 0.25 1 0 1 0 0
.......................................................................................................................................................................................................................................CTTGCTTCAACACCTATC.. 18 0 4 0.25 1 1 0 0 0
......CTGGTTTTAATCTTATACCTGTC.............................................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0
......................................................CGGCTGCCCTTAATCTAAG.................................................................................................................................................................................. 19 0 4 0.25 1 0 1 0 0
.................................................................................................CACGCGTCAAGAAACAAAA....................................................................................................................................... 19 0 4 0.25 1 1 0 0 0
.......................................................................................................................................CACGGAACATCACCCCTGA................................................................................................. 19 1 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCTGTCATT........................................................................................................................................................................................................................... 26 1 4 0.25 1 0 1 0 0
..........................................................................................................................................................................................................ATTACTTTATTTACCTTATTATAT......................... 24 0 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCGGTCACT........................................................................................................................................................................................................................... 26 1 4 0.25 1 0 1 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTA............................ 23 0 4 0.25 1 0 1 0 0
.....................................................TCGGCTGCCCTTAATCTAAGAGCCCT............................................................................................................................................................................ 26 1 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACC.................................................................................................................................................................................................................................. 19 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCGTAT.............................. 24 1 4 0.25 1 0 1 0 0
........................................................................................................................................................................................................TTATTACTTTATTTACCTTATTATATC........................ 27 1 4 0.25 1 0 1 0 0
......................................................CGGCTGTCCTTAATCTAAGAGCCCT............................................................................................................................................................................ 25 2 4 0.25 1 0 1 0 0
..........................................................................................................................................................................................................ATTACTTTATTTACCTTATT............................. 20 0 4 0.25 1 0 1 0 0
.........................................................................................................................ATAGTACAGTGGTTCACGGAACATC......................................................................................................... 25 0 4 0.25 1 1 0 0 0
........................................................................................................................................ACGGAACATCACCCCTTATA............................................................................................... 20 0 4 0.25 1 0 1 0 0
......................................................CGGCTGCCCTTAATCTAA................................................................................................................................................................................... 18 0 4 0.25 1 0 1 0 0
.....................................................................................................................................................................................................CTATTATTACTTTATTTACCTTATT............................. 25 1 4 0.25 1 0 1 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTAGT............................. 25 1 4 0.25 1 0 1 0 0
....................................................TTCGGCTGCCCTTAATCCAA................................................................................................................................................................................... 20 1 4 0.25 1 0 1 0 0
.................................................................................................................................................................................................................................ATATTACTTGCTTCAACACCT..... 21 1 4 0.25 1 0 1 0 0
..........................................................................................................................................GGAACATCACCCCTTATAA.............................................................................................. 19 0 4 0.25 1 1 0 0 0
.....................................................CCGGCTGCCCTTAATCTACGAGCCCT............................................................................................................................................................................ 26 3 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCTGTCACTG.......................................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................CTATATTATTACTTGCTTCAACACCTAT... 28 1 4 0.25 1 1 0 0 0
.....................................................TCGGCTGCCCTTAATATAAGAGCCCT............................................................................................................................................................................ 26 2 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................................TATATTATTACTTGCTTCAACACCTAT... 27 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTAGC............................. 23 2 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCTGTCACA........................................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................ATTATTACTTGCTTCAACACCT..... 22 0 4 0.25 1 1 0 0 0
....TTCTGGTTTTAATCTTATACCTGTC.............................................................................................................................................................................................................................. 25 0 4 0.25 1 0 1 0 0
....................................................................................................................................................................................................TTTATTATTACTTTATTTACCTTATTA............................ 27 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................CTATTATTACTTTATTTACCTTATTAT........................... 27 1 4 0.25 1 0 1 0 0
.CTGTTCTGGTTTTAATCTTAT..................................................................................................................................................................................................................................... 21 0 4 0.25 1 0 1 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTACCTTATTATAC......................... 27 1 4 0.25 1 0 1 0 0
......CTGGTTTTAATCTTATACCTGTCACG........................................................................................................................................................................................................................... 26 1 4 0.25 1 0 1 0 0
.......................................................................................................................................CACGGAACATCACCCCTTA................................................................................................. 19 0 4 0.25 1 0 1 0 0
.....................................................................................................................................................................................................TTATTATTACTTTATTTACCTTATTATA.......................... 28 0 4 0.25 1 0 1 0 0
........................................................................................................................................................................................................CTATTACTTTATTTACCTTATTATAT......................... 26 1 4 0.25 1 0 1 0 0
...........................................................................................................................................................................................................TTACTTTATTTACCTTATTAT........................... 21 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................CTTTTATTATTACTTTATTTACCT................................. 24 0 4 0.25 1 0 1 0 0
..........................................................................................................................................................................................ATTTTCGTCTTTTATTATTA............................................. 20 1 5 0.20 1 1 0 0 0
.......................................................................................................................................................................................................ATTATTACTTTATTTAAATTATTAT........................... 25 2 5 0.20 1 0 1 0 0
..............................................................................................ACACAGGTGTCAAGAACCAA......................................................................................................................................... 20 3 13 0.15 2 2 0 0 0
.........................................................................................................................................................................................TATTTTCGTCTTTTATTATTA............................................. 21 2 20 0.15 3 3 0 0 0
...........................................................................................................................................................................................TTTTCGTCTTTTATTATTA............................................. 19 1 15 0.13 2 2 0 0 0
..........TTCTTATCTTATGCCTGTCA............................................................................................................................................................................................................................. 20 3 20 0.10 2 0 0 1 1
..........................................CGAGCGGCCATTCGGCTGCCCTTAATCTA.................................................................................................................................................................................... 29 1 16 0.06 1 0 1 0 0
............................................AGCGGCCATTCGGCTGCCCTTAA........................................................................................................................................................................................ 23 0 16 0.06 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6454:31874-32124 + dmo_605 GGACAAGACCAAAATTAGAATATGGACAGTGACGCGGACAGGCCTCGCCGGTAAGCCGACGGGAATTAGATTCTCGCGATATTTATTTTTTTTTTGTGTGCGCAGTTCTTTGTTTTGCTTTTATCATGTCACCAAGTGCCTTGTAGTGGGGAATATTCGTGAAACAGCTAATTTAAGTTTGTTTTTTAAAAGAAGAAAATAATAATGAAATAAATGGAATAATATAATAATGAACGAAGTTGTGGATAGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GGACAAGACCAAAATTAGAATATGGACAGTGACGCGGACAGGCCTCGCCGGTAAGCCGACGGGAATTAGATTCTCGCGATATTTATTTTTTTTTTGTGTGCGCAGTTCTTTGTTTTGCTTTTATCATGTCACCAAGTGCCTTGTAGTGGGGAATATTCGTGAAACAGCTAATTTAAGTTTGTTTTTTAAAAGAAGAAAATAATAATGAAATAAATGGAATAATATAATAATGAACGAAGTTGTGGATAGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGTTG.........2641.506600000
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTA..........................................................................................................2440.753300000
............AATTAGAATATGGACAGTGACGC........................................................................................................................................................................................................................2340.502200000
.............................................................................................................................ATGTCACCAAGTGCCTTGTAGT........................................................................................................2240.502200000
..............TTAGAATATGGACAGTGACGC........................................................................................................................................................................................................................2140.502100001
.........................................................................................................................TATCATGTCACCAAGTGCCTTGT...........................................................................................................2340.502200000
....................................................................................................................................................................................................................AATGGAATAATATAATAATGAACGAAG............2740.502200000
............AATTAGAATATGGACAGTGACGCGG......................................................................................................................................................................................................................2540.502200000
.....................ATGGACAGTGACGCGGACAGG.................................................................................................................................................................................................................21160.447500020
......................TGGACAGTGACGCGGACAGGCT...............................................................................................................................................................................................................2230.331000001
............AATTAGAATATGGACAGTGACGCG.......................................................................................................................................................................................................................2440.251100000
............AATTAGAATATGGACAGTGACGCGGA.....................................................................................................................................................................................................................2640.251000001
......................................................................................................................................................................................................................TGGAATAATATAATAATGAACGAA.............2440.251100000
............................................................................................................................................................................................................................AATATAATAATGAACGAAGTTGTGGAT....2740.251100000
......................TGGACAGTGACGCGGACAGG.................................................................................................................................................................................................................20160.254400000
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTAG.........................................................................................................2540.251100000
.........................................................................................................................TATCATGTCACCAAGTGCCTTGTAGC........................................................................................................2640.251100000
.......................................................................................................................TTTATCATGTCACCAAGTGCC...............................................................................................................2140.251000010
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGTT..........2540.251000010
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAG............2340.251100000
.........................................................................................................................................................................................................................AATAATATAATAATGAACGAAGTT..........2440.251100000
........................................................................................................................................................................................................................GAATAATATAATAATGAACGAAGT...........2440.251100000
.......................................................................................................................TTTATCATGTCACCAAGTGCCTTGTAG.........................................................................................................2740.251100000
..............TTAGAATATGGACAGTGACGCGGAC....................................................................................................................................................................................................................2540.251000010
......................TGGACAGTGACGCGGACAGGT................................................................................................................................................................................................................21160.061100000
.....................ATGGACAGTGACGCGGACAG..................................................................................................................................................................................................................20170.061100000
......................TGGACAGTGACGCGGACAG..................................................................................................................................................................................................................19170.061100000

Generated: 05/17/2015 at 10:40 PM