dmo_601

intron [Dmoj\GI21843-in]; CDS [Dmoj\GI21843-cds]; exon [dmoj_GLEANR_6865:1]; CDS [Dmoj\GI21843-cds]; exon [dmoj_GLEANR_6865:2]

Name	Class	Family	Strand
(GAA)n	Simple_repeat	Simple_repeat	+

Name

Class

Family

Strand

(GAA)n

Simple_repeat

##################################################-------------------------------------------------################################################## GGCTTTATGGGGCCCACTGCGTCCGCCCACGCCTCACCGAGCGCTGCAGAGCAGCGAAGAAGAAGAAGAAGAAGAGCAGCCCATCATTATAATTGACAGCAACGAGGACGAGGTGGACGAGCAGACCGAAACAATCGTGATTTCCGATT ************************************************((.((....................)).))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V049 head
..............................................................AAGAAGAAGAAGAGCAGCCCATC................................................................	23	0	6	6.50	39	9	29	0	1	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCC...................................................................	23	0	6	5.33	32	15	15	2	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCC....................................................................	22	0	8	1.75	14	7	5	1	1	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATC................................................................	26	0	6	1.17	7	3	4	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCAT.................................................................	22	0	6	1.00	6	6	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCAT..............................................................	25	0	6	0.83	5	5	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCA..................................................................	21	0	6	0.67	4	3	0	1	0	0
..............................................................AAGAAGAAGAAGAGCAGCCC...................................................................	20	0	6	0.67	4	2	2	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCA...............................................................	24	0	6	0.67	4	4	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATT.............................................................	26	0	6	0.67	4	2	1	1	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATTA............................................................	24	0	4	0.50	2	2	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATTA............................................................	27	0	4	0.50	2	2	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCC...................................................................	22	0	6	0.50	3	2	1	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCA..................................................................	24	0	6	0.50	3	3	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATC................................................................	20	0	6	0.33	2	2	0	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCAT.................................................................	25	0	6	0.33	2	1	1	0	0	0
.............CCAGTGCGTCCGACCACGGCT...................................................................................................................	21	3	3	0.33	1	0	0	0	0	1
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCA...............................................................	27	0	6	0.33	2	2	0	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGC.....................................................................	21	0	13	0.31	4	3	1	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATC.............................................................	26	1	7	0.29	2	1	1	0	0	0
...............................................................AGAAGAAGAAGAGCAGCCCATCATTA............................................................	26	0	4	0.25	1	1	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATTAT...........................................................	25	0	4	0.25	1	1	0	0	0	0
.....................................................................AGAAGAGCAGCCCATCATTATAA.........................................................	23	0	4	0.25	1	1	0	0	0	0
....................................................................AAGAAGAGCAGCCCATCATTATA..........................................................	23	0	4	0.25	1	1	0	0	0	0
....................................................................AAGAAGAGCAGCCCATCATTATAA.........................................................	24	0	4	0.25	1	1	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATTATAA.........................................................	27	0	4	0.25	1	1	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCCA..................................................................	23	0	6	0.17	1	0	0	0	1	0
............................................................AGAAGAAGAAGAAGAGCAGCCCATCA...............................................................	26	0	6	0.17	1	1	0	0	0	0
.................................................................AAGTAGAAGAGCAGCCCATCATT.............................................................	23	1	6	0.17	1	0	1	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATA................................................................	23	1	6	0.17	1	0	1	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATTT............................................................	27	1	6	0.17	1	1	0	0	0	0
.............................................................CAAGAAGAAGAAGAGCAGCCCATC................................................................	24	1	6	0.17	1	0	1	0	0	0
...........................................................TAGAAGAAGAAGAAGAGCAGCCC...................................................................	23	1	6	0.17	1	0	1	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCAT..............................................................	28	0	6	0.17	1	1	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATT.............................................................	23	0	6	0.17	1	1	0	0	0	0
..................................................................AGAAGAAGAGCAGCCCATCA...............................................................	20	0	6	0.17	1	0	1	0	0	0
..............................................................CACAAGAAGAAGAGCAGCCCATC................................................................	23	2	6	0.17	1	0	1	0	0	0
...........................................................AAGAAGAAGAAAAAGAGCAGCCCATC................................................................	26	1	6	0.17	1	1	0	0	0	0
.............................................................GAAGAAGAAGAAGAGCAGCCC...................................................................	21	0	6	0.17	1	0	1	0	0	0
..............................GCCTCACCGAGCGCTGCAGAGCA................................................................................................	23	0	12	0.17	2	2	0	0	0	0
...........................................................AAGAAGAAGAACAAGAGCAGCCCATCA...............................................................	27	1	6	0.17	1	1	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCCATC................................................................	25	0	6	0.17	1	1	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATA.............................................................	26	1	6	0.17	1	1	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATTT...............................................................	24	2	6	0.17	1	1	0	0	0	0
..............................................................AGGAAGAAGAAGAGCAGCCCATC................................................................	23	1	6	0.17	1	0	1	0	0	0
..............................................................AAGAAGACGAAGAGCAGCCCATC................................................................	23	1	6	0.17	1	0	1	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCA...............................................................	21	0	6	0.17	1	0	1	0	0	0
..............................................................AAGATGAAGAAGAGCAGCCC...................................................................	20	1	7	0.14	1	0	1	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCAA.................................................................	22	1	7	0.14	1	1	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCC....................................................................	19	0	14	0.14	2	1	1	0	0	0
...........................................................AAGAAGACGAAGAAGAGCAGCC....................................................................	22	1	8	0.13	1	0	1	0	0	0
...........................................................AAGAAGAAGAAGCAGAGCAGCC....................................................................	22	1	8	0.13	1	0	0	1	0	0
...........................................................AAGAAGGAGAAGAAGAGCAGCC....................................................................	22	1	8	0.13	1	0	1	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCC....................................................................	21	0	9	0.11	1	0	0	0	1	0
.......................CGCCCACGCCTCACCGAGCGCTGCAGAG..................................................................................................	28	0	10	0.10	1	1	0	0	0	0
.....................TCCGCCCACGCCTCACCGAG............................................................................................................	20	0	10	0.10	1	1	0	0	0	0
.....................TCCGCCCACGCCTCACCGAGCGCTGCAG....................................................................................................	28	0	10	0.10	1	1	0	0	0	0
.........................................................AGAAGAAGAAGAAGAAGAGCAG......................................................................	22	0	10	0.10	1	1	0	0	0	0
...........................................................AGGAAGAAGAAGAAGAGCAGCCC...................................................................	23	1	11	0.09	1	0	1	0	0	0
.................................TCACCGAGCGCTGCAGAGCAGC..............................................................................................	22	0	12	0.08	1	0	1	0	0	0
..........................GGTCGCCTCACCGAGCGCTGCAGAGCAGC..............................................................................................	29	3	12	0.08	1	0	1	0	0	0
.................................TCACCGAGCGCTGCAGAGCAG...............................................................................................	21	0	13	0.08	1	0	1	0	0	0
..................................CACCGAGCGCTGCAGAGCAGC..............................................................................................	21	0	13	0.08	1	0	1	0	0	0
.......................................................GAAGAAGAAGAAGAAGAAGAGC........................................................................	22	0	16	0.06	1	0	0	0	1	0
.............................................................GAAAAAGCAGAAGAGCAGACC...................................................................	21	3	20	0.05	1	0	1	0	0	0

##################################################-------------------------------------------------##################################################
GGCTTTATGGGGCCCACTGCGTCCGCCCACGCCTCACCGAGCGCTGCAGAGCAGCGAAGAAGAAGAAGAAGAAGAGCAGCCCATCATTATAATTGACAGCAACGAGGACGAGGTGGACGAGCAGACCGAAACAATCGTGATTTCCGATT
**************************************************((.((....................)).))...................**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V049
head

..............................................................AAGAAGAAGAAGAGCAGCCCATC................................................................

6.50

...........................................................AAGAAGAAGAAGAAGAGCAGCCC...................................................................

5.33

...........................................................AAGAAGAAGAAGAAGAGCAGCC....................................................................

1.75

...........................................................AAGAAGAAGAAGAAGAGCAGCCCATC................................................................

1.17

..............................................................AAGAAGAAGAAGAGCAGCCCAT.................................................................

1.00

..............................................................AAGAAGAAGAAGAGCAGCCCATCAT..............................................................

0.83

..............................................................AAGAAGAAGAAGAGCAGCCCA..................................................................

0.67

..............................................................AAGAAGAAGAAGAGCAGCCC...................................................................

0.67

..............................................................AAGAAGAAGAAGAGCAGCCCATCA...............................................................

0.67

..............................................................AAGAAGAAGAAGAGCAGCCCATCATT.............................................................

0.67

.................................................................AAGAAGAAGAGCAGCCCATCATTA............................................................

0.50

..............................................................AAGAAGAAGAAGAGCAGCCCATCATTA............................................................

0.50

............................................................AGAAGAAGAAGAAGAGCAGCCC...................................................................

0.50

...........................................................AAGAAGAAGAAGAAGAGCAGCCCA..................................................................

0.50

.................................................................AAGAAGAAGAGCAGCCCATC................................................................

0.33

...........................................................AAGAAGAAGAAGAAGAGCAGCCCAT.................................................................

0.33

.............CCAGTGCGTCCGACCACGGCT...................................................................................................................

0.33

...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCA...............................................................

0.33

...........................................................AAGAAGAAGAAGAAGAGCAGC.....................................................................

0.31

..............................................................AAGAAGAAGAAGAGCAGCCCATCATC.............................................................

0.29

...............................................................AGAAGAAGAAGAGCAGCCCATCATTA............................................................

0.25

.................................................................AAGAAGAAGAGCAGCCCATCATTAT...........................................................

0.25

.....................................................................AGAAGAGCAGCCCATCATTATAA.........................................................

0.25

....................................................................AAGAAGAGCAGCCCATCATTATA..........................................................

0.25

....................................................................AAGAAGAGCAGCCCATCATTATAA.........................................................

0.25

.................................................................AAGAAGAAGAGCAGCCCATCATTATAA.........................................................

0.25

............................................................AGAAGAAGAAGAAGAGCAGCCCA..................................................................

0.17

............................................................AGAAGAAGAAGAAGAGCAGCCCATCA...............................................................

0.17

.................................................................AAGTAGAAGAGCAGCCCATCATT.............................................................

0.17

..............................................................AAGAAGAAGAAGAGCAGCCCATA................................................................

0.17

..............................................................AAGAAGAAGAAGAGCAGCCCATCATTT............................................................

0.17

.............................................................CAAGAAGAAGAAGAGCAGCCCATC................................................................

0.17

...........................................................TAGAAGAAGAAGAAGAGCAGCCC...................................................................

0.17

...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCAT..............................................................

0.17

.................................................................AAGAAGAAGAGCAGCCCATCATT.............................................................

0.17

..................................................................AGAAGAAGAGCAGCCCATCA...............................................................

0.17

..............................................................CACAAGAAGAAGAGCAGCCCATC................................................................

0.17

...........................................................AAGAAGAAGAAAAAGAGCAGCCCATC................................................................

0.17

.............................................................GAAGAAGAAGAAGAGCAGCCC...................................................................

0.17

..............................GCCTCACCGAGCGCTGCAGAGCA................................................................................................

0.17

...........................................................AAGAAGAAGAACAAGAGCAGCCCATCA...............................................................

0.17

............................................................AGAAGAAGAAGAAGAGCAGCCCATC................................................................

0.17

..............................................................AAGAAGAAGAAGAGCAGCCCATCATA.............................................................

0.17

..............................................................AAGAAGAAGAAGAGCAGCCCATTT...............................................................

0.17

..............................................................AGGAAGAAGAAGAGCAGCCCATC................................................................

0.17

..............................................................AAGAAGACGAAGAGCAGCCCATC................................................................

0.17

.................................................................AAGAAGAAGAGCAGCCCATCA...............................................................

0.17

..............................................................AAGATGAAGAAGAGCAGCCC...................................................................

0.14

..............................................................AAGAAGAAGAAGAGCAGCCCAA.................................................................

0.14

..............................................................AAGAAGAAGAAGAGCAGCC....................................................................

0.14

...........................................................AAGAAGACGAAGAAGAGCAGCC....................................................................

0.13

...........................................................AAGAAGAAGAAGCAGAGCAGCC....................................................................

0.13

...........................................................AAGAAGGAGAAGAAGAGCAGCC....................................................................

0.13

............................................................AGAAGAAGAAGAAGAGCAGCC....................................................................

0.11

.......................CGCCCACGCCTCACCGAGCGCTGCAGAG..................................................................................................

0.10

.....................TCCGCCCACGCCTCACCGAG............................................................................................................

0.10

.....................TCCGCCCACGCCTCACCGAGCGCTGCAG....................................................................................................

0.10

.........................................................AGAAGAAGAAGAAGAAGAGCAG......................................................................

0.10

...........................................................AGGAAGAAGAAGAAGAGCAGCCC...................................................................

0.09

.................................TCACCGAGCGCTGCAGAGCAGC..............................................................................................

0.08

..........................GGTCGCCTCACCGAGCGCTGCAGAGCAGC..............................................................................................

0.08

.................................TCACCGAGCGCTGCAGAGCAG...............................................................................................

0.08

..................................CACCGAGCGCTGCAGAGCAGC..............................................................................................

0.08

.......................................................GAAGAAGAAGAAGAAGAAGAGC........................................................................

0.06

.............................................................GAAAAAGCAGAAGAGCAGACC...................................................................

0.05

CCGAAATACCCCGGGTGACGCAGGCGGGTGCGGAGTGGCTCGCGACGTCTCGTCGCTTCTTCTTCTTCTTCTTCTCGTCGGGTAGTAATATTAACTGTCGTTGCTCCTGCTCCACCTGCTCGTCTGGCTTTGTTAGCACTAAAGGCTAA ************************************************((.((....................)).))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V049 head
...............................................TCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	25	0	8	8.63	69	42	26	1	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................	25	0	4	8.25	33	8	22	3	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	24	0	8	7.38	59	42	16	1	0	0
..............................................GTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	26	0	8	7.25	58	57	0	1	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	27	0	8	5.63	45	38	7	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCTTCT..........................................................................	24	0	4	4.50	18	15	0	3	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCT.............................................................................	22	0	8	3.63	29	3	23	3	0	0
........................CGGGTGCGGAGTGGCTCGCGACGTCT...................................................................................................	26	0	11	3.45	38	18	12	4	3	1
..........................................CGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	27	0	8	3.13	25	21	4	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCT................................................................................	24	0	8	3.13	25	18	7	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	26	0	8	2.25	18	16	2	0	0	0
........................................CGCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	29	0	8	2.00	16	8	8	0	0	0
.....................................................CGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	25	0	4	2.00	8	4	3	1	0	0
.................................................TCGTCGCTTCTTCTTCTTCTTCT.............................................................................	23	0	8	1.25	10	4	6	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCT.............................................................................	21	0	8	1.13	9	3	1	5	0	0
............................................ACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	25	0	8	1.00	8	7	1	0	0	0
..............................................GTCTCGTCGCTTCTTCTTCTTCT................................................................................	23	0	8	0.88	7	7	0	0	0	0
...........CGGGCGACGCAGACTGGTGC......................................................................................................................	20	3	6	0.83	5	0	5	0	0	0
...............................................CCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	25	1	8	0.75	6	0	6	0	0	0
..........................GGTGCGGAGTGGCTCGCGACGTCT...................................................................................................	24	0	12	0.75	9	9	0	0	0	0
..............................................TTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	26	1	8	0.63	5	2	3	0	0	0
..............................CGGAGTGGCTCGCGACGTCTCGT................................................................................................	23	0	12	0.58	7	7	0	0	0	0
..................................................TGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................	25	1	8	0.50	4	3	0	1	0	0
.........................GGGTGCGGAGTGGCTCGCGACGTCT...................................................................................................	25	0	12	0.50	6	6	0	0	0	0
......................................................GCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	24	0	4	0.50	2	2	0	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	29	0	8	0.50	4	3	1	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	28	0	4	0.50	2	2	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................	27	0	4	0.50	2	1	1	0	0	0
...............................................TCTCGTCGCTTCTTCTTCTTCT................................................................................	22	0	8	0.50	4	3	1	0	0	0
..............................................GTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................	25	0	8	0.50	4	4	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTC..............................................................................	23	0	8	0.50	4	4	0	0	0	0
....................................................TCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	26	0	4	0.50	2	2	0	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCTT............................................................................	22	0	5	0.40	2	1	0	1	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTTC...........................................................................	24	0	5	0.40	2	2	0	0	0	0
..............................................GTCTCGTCGCTTCTTCTTCTTCTT...............................................................................	24	0	8	0.38	3	3	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................	25	0	8	0.38	3	3	0	0	0	0
..........................................CGACGTCTCGTCGCTTCTTCTTCT...................................................................................	24	0	8	0.38	3	2	1	0	0	0
.........................................GCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	28	0	8	0.38	3	3	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCT................................................................................	21	0	8	0.38	3	2	1	0	0	0
...............................GGAGTGGCTCGCGACGTCTCGT................................................................................................	22	0	12	0.33	4	4	0	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTGT.............................................................................	22	1	9	0.33	3	0	3	0	0	0
.....................................................CGCTTCTTCTTCTTCTTCTTCTCTT.......................................................................	25	1	6	0.33	2	0	2	0	0	0
..................CGCAGGCGGGTGCGGAGTGGCT.............................................................................................................	22	0	10	0.30	3	2	0	0	1	0
.................................................CCGTCGCTTCTTCTTCTTCTTCT.............................................................................	23	1	10	0.30	3	0	3	0	0	0
..........................................CGACGTCTCGTCGCTTCTTCTTCTT..................................................................................	25	0	8	0.25	2	1	1	0	0	0
...................................................ATCGCTTCTTCTTCTTCTTCTTCT..........................................................................	24	1	8	0.25	2	2	0	0	0	0
..............................................CTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	26	1	8	0.25	2	2	0	0	0	0
.....................................................CGCTTCTTCTTCTTCTTCTTCTCG........................................................................	24	0	4	0.25	1	1	0	0	0	0
........................................CGCGACGTCTCGTCGCTTCTTCTTCTTC.................................................................................	28	0	8	0.25	2	2	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCCTCT.............................................................................	24	1	8	0.25	2	0	2	0	0	0
..............................................GTCTCGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................	29	0	4	0.25	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTC.................................................................................	23	0	8	0.25	2	2	0	0	0	0
..............................CGGAGTGGCTCGCGACGTCT...................................................................................................	20	0	12	0.25	3	0	2	1	0	0
.....................................................CGCTTCTTCTTCTTCTTCTTCT..........................................................................	22	0	8	0.25	2	0	2	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTT...............................................................................	22	0	8	0.25	2	1	1	0	0	0
................................................TTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	24	1	8	0.25	2	0	2	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	27	0	4	0.25	1	1	0	0	0	0
............................................ACGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................	26	0	8	0.25	2	2	0	0	0	0
...................................................GTCGCATCTTCTTCTTCTTCTTCT..........................................................................	24	1	4	0.25	1	1	0	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTT...............................................................................	20	0	8	0.25	2	2	0	0	0	0
...........................GTGCGGAGTGGCTCGCGACGTCT...................................................................................................	23	0	12	0.25	3	0	0	3	0	0
......................................................................TTTCTCGTCGGGTAGTAATAT..........................................................	21	1	4	0.25	1	1	0	0	0	0
..........................................................................................................CTGCTCCACCTGCTCGTCTAGCT....................	23	1	4	0.25	1	0	1	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCTTCTCG........................................................................	26	0	4	0.25	1	1	0	0	0	0
..................................................CGTCGCTTCTTCTTCGTCTTATTCT..........................................................................	25	2	4	0.25	1	0	0	1	0	0
................................................CTCGTCGCTTCTTCTTCTTC.................................................................................	20	0	8	0.25	2	2	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTCTTC...........................................................................	26	0	5	0.20	1	1	0	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTCTT............................................................................	25	0	5	0.20	1	0	1	0	0	0
.....................................................CGCTTCTTCTTCTTCTTCTCCTCGT.......................................................................	25	1	5	0.20	1	1	0	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTCCTTC...........................................................................	24	1	5	0.20	1	1	0	0	0	0
.................................................TCGTCGCTTCTTCTTCTTCTTCGT............................................................................	24	1	5	0.20	1	0	1	0	0	0
...................................................GTCGCTTCTTCTTCTTCTTCTTC...........................................................................	23	0	5	0.20	1	1	0	0	0	0
....................................................TCGCTTCTTCTTCTTCTTCTTC...........................................................................	22	0	6	0.17	1	1	0	0	0	0
.........................GGGTGCGGAGTGGCTCGCGACGT.....................................................................................................	23	0	12	0.17	2	1	1	0	0	0
.............................GCGGAGCGGCTCGCGACGTCTCGT................................................................................................	24	1	12	0.17	2	2	0	0	0	0
.............................GCGGAGTGGCTCGCGACGTCTCGT................................................................................................	24	0	12	0.17	2	2	0	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTCCT..........................................................................	25	1	7	0.14	1	0	1	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTTGT..........................................................................	25	1	7	0.14	1	0	1	0	0	0
.....................................................CGCTTCTTCTTCTTCTTCT.............................................................................	19	0	15	0.13	2	1	1	0	0	0
.............................................CGACTCGTCGCTTCTTCTTCTTCT................................................................................	24	1	8	0.13	1	1	0	0	0	0
.........................................GTGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	28	1	8	0.13	1	0	1	0	0	0
................................................CTCGTCGCTTCTTCTTCT...................................................................................	18	0	8	0.13	1	1	0	0	0	0
.........................................TCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	28	1	8	0.13	1	0	1	0	0	0
..............................................ATCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	26	1	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCGTCT.............................................................................	27	1	8	0.13	1	0	1	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCT...................................................................................	21	0	8	0.13	1	0	1	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................	28	0	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTTGT.............................................................................	27	1	8	0.13	1	0	1	0	0	0
..............................................CTCTCGTCGCTTCTTCTTCTTCTCCT.............................................................................	26	2	8	0.13	1	0	1	0	0	0
........................................AACGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	29	2	8	0.13	1	1	0	0	0	0
..........................................CAACGTCCCGTCGCTTCTTCTTCTTCT................................................................................	27	2	8	0.13	1	0	1	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTC..............................................................................	21	0	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTTTTCT.............................................................................	27	1	8	0.13	1	0	1	0	0	0
..................................................CGTCGCTTCTTCTTCTTCGTCT.............................................................................	22	1	8	0.13	1	0	1	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCT...................................................................................	23	0	8	0.13	1	1	0	0	0	0
..........................................CGACGTCTCGTCGCTTCTTCTTCTTC.................................................................................	26	0	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTTTT.............................................................................	27	1	8	0.13	1	1	0	0	0	0
............................................ACGTCTCGTCGCTTCTTCTTCTTC.................................................................................	24	0	8	0.13	1	1	0	0	0	0
.............................................CGTCTCCTCGCTTCTTCTTCTTCT................................................................................	24	1	8	0.13	1	0	1	0	0	0
...........................................AACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	26	1	8	0.13	1	1	0	0	0	0
...............................................CCTCGTCGCTTCTTCTTCTTCTTGT.............................................................................	25	2	8	0.13	1	0	1	0	0	0
.................................................TCGTCGCTTCTTCTTCTTCCTCT.............................................................................	23	1	8	0.13	1	0	1	0	0	0
...............................................CCTCGTCGCTTCTTCTTCTTCTTT..............................................................................	24	2	8	0.13	1	0	1	0	0	0
...............................................TCTCGTCGCTTCTTCTTCTTCTT...............................................................................	23	0	8	0.13	1	0	1	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTCTC...............................................................................	27	1	8	0.13	1	1	0	0	0	0
...........................................TACGTCTCGTCGCTTCTTCTTCTTCT................................................................................	26	1	8	0.13	1	1	0	0	0	0
...............................................TCTCGTCGCTTCTTCTTCTTC.................................................................................	21	0	8	0.13	1	0	0	1	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTTCC.............................................................................	27	1	8	0.13	1	0	1	0	0	0
........................................CGCGACGTCTCGTCGCTTCTTCTTCTTGT................................................................................	29	1	8	0.13	1	0	1	0	0	0
..........................................AGACGTCTCGTCGCTTCTTCTTCT...................................................................................	24	1	8	0.13	1	1	0	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTGT................................................................................	26	1	8	0.13	1	0	1	0	0	0
................................................CTCGTCGCTTCTTCTTCTTCTTTT.............................................................................	24	1	8	0.13	1	0	1	0	0	0
..............................................ATCTCGTCGCTTCTTCTTC....................................................................................	19	1	8	0.13	1	1	0	0	0	0
.........................................ACGACGTCTCGTCGCTTCTTCTGCTTCT................................................................................	28	2	8	0.13	1	0	1	0	0	0
........................................CGCGACGTCTCGTCGCTTCTTCTTC....................................................................................	25	0	8	0.13	1	0	1	0	0	0
..............................................TTCTCGTCGCTTCTTCTTCTTCTTCA.............................................................................	26	2	8	0.13	1	1	0	0	0	0
..............................................TTCTCGTCGCTTCTTCTTCTTTTTCT.............................................................................	26	2	8	0.13	1	0	1	0	0	0
..........................................CGACGTCTCGTCGCTTCTTCTTCTTCG................................................................................	27	1	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCGTCT................................................................................	24	1	8	0.13	1	0	1	0	0	0
.......................................TCGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................	27	0	8	0.13	1	0	1	0	0	0
......................................CTCGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................	28	0	8	0.13	1	0	1	0	0	0
..............................................GTCTCGTCGCTTCTTCTT.....................................................................................	18	0	8	0.13	1	1	0	0	0	0
.............................................CGTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................	26	0	8	0.13	1	1	0	0	0	0
...............................................TCTCGTCGCTTCTTCCTCTTC.................................................................................	21	1	8	0.13	1	1	0	0	0	0
...............................................TCTCGTCGCTTCTTCTTCTTCTTC..............................................................................	24	0	8	0.13	1	1	0	0	0	0
........................................CGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................	26	0	8	0.13	1	1	0	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................	27	0	8	0.13	1	1	0	0	0	0
..............................................GTCTCGTCGCTTCTTCTTCT...................................................................................	20	0	8	0.13	1	1	0	0	0	0
...............................................TCTCGTCGCTTCTTCTTCTTCTCCT.............................................................................	25	1	8	0.13	1	1	0	0	0	0
...........................................GACGTCTCGTCGCTTCTTCTTCTTC.................................................................................	25	0	8	0.13	1	1	0	0	0	0
...............................................TCTCGTCCCTTCTTCTTCTTCTTCT.............................................................................	25	1	8	0.13	1	0	1	0	0	0
...........................................AACGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	29	1	8	0.13	1	1	0	0	0	0
..............................................GTCTCGTCGCTCCTTCTTCTTCT................................................................................	23	1	8	0.13	1	1	0	0	0	0
...............................................CTTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	25	2	9	0.11	1	0	1	0	0	0
................................................CTCGTCCCTTCTTCTTCTTCTTCT.............................................................................	24	1	9	0.11	1	1	0	0	0	0
..............................................AACTCGTCGCTTCTTCTTCTTCTTCT.............................................................................	26	2	9	0.11	1	1	0	0	0	0
..................AGCAGGCGGGTGCGGAGTGGCT.............................................................................................................	22	1	10	0.10	1	1	0	0	0	0
....................................................TCGCTTCTTCTTCTTCTTCT.............................................................................	20	0	10	0.10	1	1	0	0	0	0
.....................AGGCGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................	27	0	10	0.10	1	1	0	0	0	0
......................GGCGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................	26	0	10	0.10	1	1	0	0	0	0
......................GGCGGGTGCGGAGTGGCTCGCGA........................................................................................................	23	0	10	0.10	1	1	0	0	0	0
...................GCAGGCGGGTGCGGAGTGGCTC............................................................................................................	22	0	10	0.10	1	1	0	0	0	0
........................CGGATGCGGAGTGGCTCGCGACGTCT...................................................................................................	26	1	11	0.09	1	0	1	0	0	0
........................CGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................	24	0	11	0.09	1	1	0	0	0	0
........................CGGGTGTGGAGTGGCTCGCGACGTCT...................................................................................................	26	1	11	0.09	1	0	1	0	0	0
.....................................................TGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	25	1	11	0.09	1	1	0	0	0	0
........................CGGGTGCGGAGTGGCTCGCGACGTC....................................................................................................	25	0	11	0.09	1	1	0	0	0	0
..........................GGTGCGGAGTGGCTCGCGACGTC....................................................................................................	23	0	12	0.08	1	1	0	0	0	0
..............................................GTCTCGTCGCTTCTGCTTCTTCTTCT.............................................................................	26	1	12	0.08	1	1	0	0	0	0
...........................GTGCGGAGTGGCTCGCGACGT.....................................................................................................	21	0	12	0.08	1	0	0	0	1	0
.................................................CCGTCGCTTCTTCTTCTTCT................................................................................	20	1	12	0.08	1	0	1	0	0	0
..........................GGTGCGGAGTGGCTCGCGACGTCTCG.................................................................................................	26	0	12	0.08	1	1	0	0	0	0
.......................................................CTTCTTCTTCTTCTTCTTCTCGT.......................................................................	23	0	12	0.08	1	1	0	0	0	0
............................TGTGGAGTGGCTCGCGACGTCTCG.................................................................................................	24	1	12	0.08	1	0	0	0	1	0
...............................GGAGTGGCTCGCGACGTCTCGTCGC.............................................................................................	25	0	12	0.08	1	1	0	0	0	0
...............................................TCTCGTCGCTTCTGCTTCTTCTTCT.............................................................................	25	1	12	0.08	1	1	0	0	0	0
.........................GGGTGCGGAGTGGCTCGCGTCGT.....................................................................................................	23	1	12	0.08	1	0	1	0	0	0
..............................CGGAGTGGCTCGCGACGTCTCTT................................................................................................	23	1	12	0.08	1	0	1	0	0	0
..................................................CGTCGCTTCTTCTTCTTCTTCTTCTTCT.......................................................................	28	2	13	0.08	1	1	0	0	0	0
.....................................................CTCTTCTTCTTCTTCTTCTTCTCGT.......................................................................	25	1	13	0.08	1	0	0	1	0	0
..................ACCAGGCGGGTGCGGAGTGC...............................................................................................................	20	3	13	0.08	1	1	0	0	0	0
..................................GTGGCTCGCGACGTCTCGTCGCTTCT.........................................................................................	26	0	13	0.08	1	1	0	0	0	0
......................................................GCTTCTTCTTCTTCTTCTTCTCCT.......................................................................	24	1	20	0.05	1	1	0	0	0	0
.................................................................TTCTTCTCCTCGTCGGTTA.................................................................	19	2	20	0.05	1	1	0	0	0	0

CCGAAATACCCCGGGTGACGCAGGCGGGTGCGGAGTGGCTCGCGACGTCTCGTCGCTTCTTCTTCTTCTTCTTCTCGTCGGGTAGTAATATTAACTGTCGTTGCTCCTGCTCCACCTGCTCGTCTGGCTTTGTTAGCACTAAAGGCTAA
**************************************************((.((....................)).))...................**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V049
head

...............................................TCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

8.63

..................................................CGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................

8.25

................................................CTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

7.38

..............................................GTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

7.25

.............................................CGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

5.63

...................................................GTCGCTTCTTCTTCTTCTTCTTCT..........................................................................

4.50

..................................................CGTCGCTTCTTCTTCTTCTTCT.............................................................................

3.63

........................CGGGTGCGGAGTGGCTCGCGACGTCT...................................................................................................

3.45

..........................................CGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

3.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCT................................................................................

3.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

2.25

........................................CGCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

2.00

.....................................................CGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

2.00

.................................................TCGTCGCTTCTTCTTCTTCTTCT.............................................................................

1.25

...................................................GTCGCTTCTTCTTCTTCTTCT.............................................................................

1.13

............................................ACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

1.00

..............................................GTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.88

...........CGGGCGACGCAGACTGGTGC......................................................................................................................

0.83

...............................................CCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.75

..........................GGTGCGGAGTGGCTCGCGACGTCT...................................................................................................

0.75

..............................................TTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.63

..............................CGGAGTGGCTCGCGACGTCTCGT................................................................................................

0.58

..................................................TGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................

0.50

.........................GGGTGCGGAGTGGCTCGCGACGTCT...................................................................................................

0.50

......................................................GCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.50

...........................................GACGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.50

..................................................CGTCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.50

................................................CTCGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................

0.50

...............................................TCTCGTCGCTTCTTCTTCTTCT................................................................................

0.50

..............................................GTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................

0.50

................................................CTCGTCGCTTCTTCTTCTTCTTC..............................................................................

0.50

....................................................TCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.50

...................................................GTCGCTTCTTCTTCTTCTTCTT............................................................................

0.40

..................................................CGTCGCTTCTTCTTCTTCTTCTTC...........................................................................

0.40

..............................................GTCTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.38

.............................................CGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.38

..........................................CGACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.38

.........................................GCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.38

................................................CTCGTCGCTTCTTCTTCTTCT................................................................................

0.38

...............................GGAGTGGCTCGCGACGTCTCGT................................................................................................

0.33

..................................................CGTCGCTTCTTCTTCTTCTTGT.............................................................................

0.33

.....................................................CGCTTCTTCTTCTTCTTCTTCTCTT.......................................................................

0.33

..................CGCAGGCGGGTGCGGAGTGGCT.............................................................................................................

0.30

.................................................CCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.30

..........................................CGACGTCTCGTCGCTTCTTCTTCTT..................................................................................

0.25

...................................................ATCGCTTCTTCTTCTTCTTCTTCT..........................................................................

0.25

..............................................CTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.25

.....................................................CGCTTCTTCTTCTTCTTCTTCTCG........................................................................

0.25

........................................CGCGACGTCTCGTCGCTTCTTCTTCTTC.................................................................................

0.25

................................................CTCGTCGCTTCTTCTTCTTCCTCT.............................................................................

0.25

..............................................GTCTCGTCGCTTCTTCTTCTTCTTCTTCT..........................................................................

0.25

.............................................CGTCTCGTCGCTTCTTCTTCTTC.................................................................................

0.25

..............................CGGAGTGGCTCGCGACGTCT...................................................................................................

0.25

.....................................................CGCTTCTTCTTCTTCTTCTTCT..........................................................................

0.25

................................................CTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.25

................................................TTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.25

...................................................GTCGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.25

............................................ACGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.25

...................................................GTCGCATCTTCTTCTTCTTCTTCT..........................................................................

0.25

..................................................CGTCGCTTCTTCTTCTTCTT...............................................................................

0.25

...........................GTGCGGAGTGGCTCGCGACGTCT...................................................................................................

0.25

......................................................................TTTCTCGTCGGGTAGTAATAT..........................................................

0.25

..........................................................................................................CTGCTCCACCTGCTCGTCTAGCT....................

0.25

...................................................GTCGCTTCTTCTTCTTCTTCTTCTCG........................................................................

0.25

..................................................CGTCGCTTCTTCTTCGTCTTATTCT..........................................................................

0.25

................................................CTCGTCGCTTCTTCTTCTTC.................................................................................

0.25

................................................CTCGTCGCTTCTTCTTCTTCTTCTTC...........................................................................

0.20

................................................CTCGTCGCTTCTTCTTCTTCTTCTT............................................................................

0.20

.....................................................CGCTTCTTCTTCTTCTTCTCCTCGT.......................................................................

0.20

..................................................CGTCGCTTCTTCTTCTTCTCCTTC...........................................................................

0.20

.................................................TCGTCGCTTCTTCTTCTTCTTCGT............................................................................

0.20

...................................................GTCGCTTCTTCTTCTTCTTCTTC...........................................................................

0.20

....................................................TCGCTTCTTCTTCTTCTTCTTC...........................................................................

0.17

.........................GGGTGCGGAGTGGCTCGCGACGT.....................................................................................................

0.17

.............................GCGGAGCGGCTCGCGACGTCTCGT................................................................................................

0.17

.............................GCGGAGTGGCTCGCGACGTCTCGT................................................................................................

0.17

..................................................CGTCGCTTCTTCTTCTTCTTCTCCT..........................................................................

0.14

..................................................CGTCGCTTCTTCTTCTTCTTCTTGT..........................................................................

0.14

.....................................................CGCTTCTTCTTCTTCTTCT.............................................................................

0.13

.............................................CGACTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

.........................................GTGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

................................................CTCGTCGCTTCTTCTTCT...................................................................................

0.13

.........................................TCGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

..............................................ATCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCGTCT.............................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCTTGT.............................................................................

0.13

..............................................CTCTCGTCGCTTCTTCTTCTTCTCCT.............................................................................

0.13

........................................AACGACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

..........................................CAACGTCCCGTCGCTTCTTCTTCTTCT................................................................................

0.13

..................................................CGTCGCTTCTTCTTCTTCTTC..............................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTTTTCT.............................................................................

0.13

..................................................CGTCGCTTCTTCTTCTTCGTCT.............................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

..........................................CGACGTCTCGTCGCTTCTTCTTCTTC.................................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCTTTT.............................................................................

0.13

............................................ACGTCTCGTCGCTTCTTCTTCTTC.................................................................................

0.13

.............................................CGTCTCCTCGCTTCTTCTTCTTCT................................................................................

0.13

...........................................AACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

...............................................CCTCGTCGCTTCTTCTTCTTCTTGT.............................................................................

0.13

.................................................TCGTCGCTTCTTCTTCTTCCTCT.............................................................................

0.13

...............................................CCTCGTCGCTTCTTCTTCTTCTTT..............................................................................

0.13

...............................................TCTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTCTC...............................................................................

0.13

...........................................TACGTCTCGTCGCTTCTTCTTCTTCT................................................................................

0.13

...............................................TCTCGTCGCTTCTTCTTCTTC.................................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCTTCC.............................................................................

0.13

........................................CGCGACGTCTCGTCGCTTCTTCTTCTTGT................................................................................

0.13

..........................................AGACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTGT................................................................................

0.13

................................................CTCGTCGCTTCTTCTTCTTCTTTT.............................................................................

0.13

..............................................ATCTCGTCGCTTCTTCTTC....................................................................................

0.13

.........................................ACGACGTCTCGTCGCTTCTTCTGCTTCT................................................................................

0.13

........................................CGCGACGTCTCGTCGCTTCTTCTTC....................................................................................

0.13

..............................................TTCTCGTCGCTTCTTCTTCTTCTTCA.............................................................................

0.13

..............................................TTCTCGTCGCTTCTTCTTCTTTTTCT.............................................................................

0.13

..........................................CGACGTCTCGTCGCTTCTTCTTCTTCG................................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCGTCT................................................................................

0.13

.......................................TCGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

......................................CTCGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

..............................................GTCTCGTCGCTTCTTCTT.....................................................................................

0.13

.............................................CGTCTCGTCGCTTCTTCTTCTTCTTC..............................................................................

0.13

...............................................TCTCGTCGCTTCTTCCTCTTC.................................................................................

0.13

...............................................TCTCGTCGCTTCTTCTTCTTCTTC..............................................................................

0.13

........................................CGCGACGTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTCTT...............................................................................

0.13

..............................................GTCTCGTCGCTTCTTCTTCT...................................................................................

0.13

...............................................TCTCGTCGCTTCTTCTTCTTCTCCT.............................................................................

0.13

...........................................GACGTCTCGTCGCTTCTTCTTCTTC.................................................................................

0.13

...............................................TCTCGTCCCTTCTTCTTCTTCTTCT.............................................................................

0.13

...........................................AACGTCTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.13

..............................................GTCTCGTCGCTCCTTCTTCTTCT................................................................................

0.13

...............................................CTTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.11

................................................CTCGTCCCTTCTTCTTCTTCTTCT.............................................................................

0.11

..............................................AACTCGTCGCTTCTTCTTCTTCTTCT.............................................................................

0.11

..................AGCAGGCGGGTGCGGAGTGGCT.............................................................................................................

0.10

....................................................TCGCTTCTTCTTCTTCTTCT.............................................................................

0.10

.....................AGGCGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................

0.10

......................GGCGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................

0.10

......................GGCGGGTGCGGAGTGGCTCGCGA........................................................................................................

0.10

...................GCAGGCGGGTGCGGAGTGGCTC............................................................................................................

0.10

........................CGGATGCGGAGTGGCTCGCGACGTCT...................................................................................................

0.09

........................CGGGTGCGGAGTGGCTCGCGACGT.....................................................................................................

0.09

........................CGGGTGTGGAGTGGCTCGCGACGTCT...................................................................................................

0.09

.....................................................TGCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.09

........................CGGGTGCGGAGTGGCTCGCGACGTC....................................................................................................

0.09

..........................GGTGCGGAGTGGCTCGCGACGTC....................................................................................................

0.08

..............................................GTCTCGTCGCTTCTGCTTCTTCTTCT.............................................................................

0.08

...........................GTGCGGAGTGGCTCGCGACGT.....................................................................................................

0.08

.................................................CCGTCGCTTCTTCTTCTTCT................................................................................

0.08

..........................GGTGCGGAGTGGCTCGCGACGTCTCG.................................................................................................

0.08

.......................................................CTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.08

............................TGTGGAGTGGCTCGCGACGTCTCG.................................................................................................

0.08

...............................GGAGTGGCTCGCGACGTCTCGTCGC.............................................................................................

0.08

...............................................TCTCGTCGCTTCTGCTTCTTCTTCT.............................................................................

0.08

.........................GGGTGCGGAGTGGCTCGCGTCGT.....................................................................................................

0.08

..............................CGGAGTGGCTCGCGACGTCTCTT................................................................................................

0.08

..................................................CGTCGCTTCTTCTTCTTCTTCTTCTTCT.......................................................................

0.08

.....................................................CTCTTCTTCTTCTTCTTCTTCTCGT.......................................................................

0.08

..................ACCAGGCGGGTGCGGAGTGC...............................................................................................................

0.08

..................................GTGGCTCGCGACGTCTCGTCGCTTCT.........................................................................................

0.08

......................................................GCTTCTTCTTCTTCTTCTTCTCCT.......................................................................

0.05

.................................................................TTCTTCTCCTCGTCGGTTA.................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6428:6075-6223 +	dmo_601	GGCTTTATGGGGCCCACTGCGTCCGCCCACGCCTCACCGAGCGCTGCAGAGCAGCGAAGAAGAAGAAGAAGAAGAGCAGCCCATCATTATAATTGACAGCAACGAGGACGAGGTGGACGAGCAGACCGAAACAATCGTGATTTCCGATT

Species

Coordinate

Alignment

droMoj3

scaffold_6428:6075-6223 +

dmo_601

GGCTTTATGGGGCCCACTGCGTCCGCCCACGCCTCACCGAGCGCTGCAGAGCAGCGAAGAAGAAGAAGAAGAAGAGCAGCCCATCATTATAATTGACAGCAACGAGGACGAGGTGGACGAGCAGACCGAAACAATCGTGATTTCCGATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GGCTTTATGGGGCCCACTGCGTCCGCCCACGCCTCACCGAGCGCTGCAGAGCAGCGAAGAAGAAGAAGAAGAAGAGCAGCCCATCATTATAATTGACAGCAACGAGGACGAGGTGGACGAGCAGACCGAAACAATCGTGATTTCCGATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................AAGAAGAAGAAGAGCAGCCCATC................................................................	23	6	6.50	39	9	0	0	0	29	1
...........................................................AAGAAGAAGAAGAAGAGCAGCCC...................................................................	23	6	5.33	32	15	2	0	0	15	0
...........................................................AAGAAGAAGAAGAAGAGCAGCC....................................................................	22	8	1.75	14	7	1	0	0	5	1
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATC................................................................	26	6	1.17	7	3	0	0	0	4	0
..............................................................AAGAAGAAGAAGAGCAGCCCAT.................................................................	22	6	1.00	6	6	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCAT..............................................................	25	6	0.83	5	5	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCA..................................................................	21	6	0.67	4	3	1	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCC...................................................................	20	6	0.67	4	2	0	0	0	2	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCA...............................................................	24	6	0.67	4	4	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATT.............................................................	26	6	0.67	4	2	1	0	0	1	0
.................................................................AAGAAGAAGAGCAGCCCATCATTA............................................................	24	4	0.50	2	2	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATTA............................................................	27	4	0.50	2	2	0	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCC...................................................................	22	6	0.50	3	2	0	0	0	1	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCA..................................................................	24	6	0.50	3	3	0	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATC................................................................	20	6	0.33	2	2	0	0	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCAT.................................................................	25	6	0.33	2	1	0	0	0	1	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCA...............................................................	27	6	0.33	2	2	0	0	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGC.....................................................................	21	13	0.31	4	3	0	0	0	1	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATC.............................................................	26	7	0.29	2	1	0	0	0	1	0
...............................................................AGAAGAAGAAGAGCAGCCCATCATTA............................................................	26	4	0.25	1	1	0	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATTAT...........................................................	25	4	0.25	1	1	0	0	0	0	0
.....................................................................AGAAGAGCAGCCCATCATTATAA.........................................................	23	4	0.25	1	1	0	0	0	0	0
....................................................................AAGAAGAGCAGCCCATCATTATA..........................................................	23	4	0.25	1	1	0	0	0	0	0
....................................................................AAGAAGAGCAGCCCATCATTATAA.........................................................	24	4	0.25	1	1	0	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATTATAA.........................................................	27	4	0.25	1	1	0	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCCA..................................................................	23	6	0.17	1	0	0	0	0	0	1
............................................................AGAAGAAGAAGAAGAGCAGCCCATCA...............................................................	26	6	0.17	1	1	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATA................................................................	23	6	0.17	1	0	0	0	0	1	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATTT............................................................	27	6	0.17	1	1	0	0	0	0	0
...........................................................AAGAAGAAGAAGAAGAGCAGCCCATCAT..............................................................	28	6	0.17	1	1	0	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCATT.............................................................	23	6	0.17	1	1	0	0	0	0	0
..................................................................AGAAGAAGAGCAGCCCATCA...............................................................	20	6	0.17	1	0	0	0	0	1	0
.............................................................GAAGAAGAAGAAGAGCAGCCC...................................................................	21	6	0.17	1	0	0	0	0	1	0
..............................GCCTCACCGAGCGCTGCAGAGCA................................................................................................	23	12	0.17	2	2	0	0	0	0	0
............................................................AGAAGAAGAAGAAGAGCAGCCCATC................................................................	25	6	0.17	1	1	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATCATA.............................................................	26	6	0.17	1	1	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCCCATTT...............................................................	24	6	0.17	1	1	0	0	0	0	0
.................................................................AAGAAGAAGAGCAGCCCATCA...............................................................	21	6	0.17	1	0	0	0	0	1	0
..............................................................AAGAAGAAGAAGAGCAGCCCAA.................................................................	22	7	0.14	1	1	0	0	0	0	0
..............................................................AAGAAGAAGAAGAGCAGCC....................................................................	19	14	0.14	2	1	0	0	0	1	0
............................................................AGAAGAAGAAGAAGAGCAGCC....................................................................	21	9	0.11	1	0	0	0	0	0	1
.......................CGCCCACGCCTCACCGAGCGCTGCAGAG..................................................................................................	28	10	0.10	1	1	0	0	0	0	0
.....................TCCGCCCACGCCTCACCGAG............................................................................................................	20	10	0.10	1	1	0	0	0	0	0
.....................TCCGCCCACGCCTCACCGAGCGCTGCAG....................................................................................................	28	10	0.10	1	1	0	0	0	0	0
.........................................................AGAAGAAGAAGAAGAAGAGCAG......................................................................	22	10	0.10	1	1	0	0	0	0	0
.................................TCACCGAGCGCTGCAGAGCAGC..............................................................................................	22	12	0.08	1	0	0	0	0	1	0
.................................TCACCGAGCGCTGCAGAGCAG...............................................................................................	21	13	0.08	1	0	0	0	0	1	0
..................................CACCGAGCGCTGCAGAGCAGC..............................................................................................	21	13	0.08	1	0	0	0	0	1	0
.......................................................GAAGAAGAAGAAGAAGAAGAGC........................................................................	22	16	0.06	1	0	0	0	0	0	1

dmo_601

scaffold_6428:6125-6173 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads