ID:

dmo_600

 Coordinate:

scaffold_6424:7456-7606 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.1 -37.0 -37.0

Flybase annnotation

CDS [Dmoj\GI14484-cds]; exon [dmoj_GLEANR_15020:3]; intron [Dmoj\GI14484-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_4701:275-293 +
  2. scaffold_6328:2342110-2342128 +
  3. dmo_600  scaffold_6424:7549-7567 +
  4. scaffold_6473:5242651-5242669 +
  5. scaffold_6473:10731691-10731709 +
  6. scaffold_6488:41802-41820 +
  7. scaffold_6496:1136584-1136602 +
  8. scaffold_6496:7782643-7782661 +
  9. scaffold_6496:8516936-8516954 +
  10. scaffold_6496:15399556-15399574 +
  11. scaffold_6500:8569167-8569185 +
  12. scaffold_6500:13207308-13207326 +
  13. scaffold_6500:24906369-24906387 +
  14. scaffold_6540:14745383-14745401 +
  15. scaffold_6540:16946593-16946611 +
  16. scaffold_6540:32966047-32966065 +
  17. scaffold_6680:4345036-4345054 +
  18. scaffold_6680:5441190-5441208 +
  19. scaffold_6680:5486373-5486391 +
  20. scaffold_6680:9408356-9408374 +
  21. scaffold_6308:2802267-2802285 +
  22. scaffold_6328:1561203-1561221 +
  23. scaffold_6359:3944160-3944178 +
  24. scaffold_6473:6134200-6134218 +
  25. scaffold_6473:8572305-8572323 +
  26. scaffold_6496:6537283-6537301 +
  27. scaffold_6496:9018733-9018751 +
  28. scaffold_6500:21968996-21969014 +
  29. scaffold_6500:25258884-25258902 +
  30. scaffold_6540:18946206-18946224 +
  31. scaffold_6540:26664803-26664821 +
  32. scaffold_6540:27238507-27238525 +
  33. scaffold_6680:3369366-3369384 +
  34. scaffold_6680:3979346-3979364 +
  35. scaffold_6680:7802929-7802947 +
  36. scaffold_6680:12509476-12509494 +
  37. scaffold_6680:13166907-13166925 +
  38. scaffold_6680:15390402-15390420 +
  39. scaffold_6680:16208298-16208316 +
  40. scaffold_6680:21006474-21006492 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAAATTTGTTTTGAAATTTGCAATGCTCGTTCCCCGTCGAGTGTCTGCTGAAATTTTCAATTGAATTCGTTGTAAGATCCACAGGCGAATTGCCAAAAAGCGAGTGAGACGAAAAGGGGCGACTAAAAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGTTGTCGTCTTGCTTGTCCTTCCACAAAGCAAACAGACAAAGCGCATTGCAAACGACAACAGCAACAGCAGCAGCAACAACAGCAA
**************************************************..............((((((((((.......))).)))))))........(((((((((((((......((........))..((((.((.((.((.((....)).)).)).)).)))))))))))))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.........................................................................TAAGATCCACCGTCGAAA................................................................................................................................................................ 18 3 20 0.65 13 11 0 2
.......................................................................GGTAAGATCCACCGTCGAA................................................................................................................................................................. 19 3 5 0.20 1 1 0 0
................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACAACAG... 24 0 20 0.05 1 0 1 0
...............................................................................................................................................AGCAGCAGGAGCAGCAGCA......................................................................................... 19 0 20 0.05 1 1 0 0
........................................................................................................................................................................................................................AACGCCAACAGCAACAGCAGC.............. 21 1 20 0.05 1 0 1 0
............................................................................................................................................................................................................................ACAACAGCAACAGCAGCAGCAACAACA.... 27 0 20 0.05 1 1 0 0

Anti-sense strand reads

CGTTTAAACAAAACTTTAAACGTTACGAGCAAGGGGCAGCTCACAGACGACTTTAAAAGTTAACTTAAGCAACATTCTAGGTGTCCGCTTAACGGTTTTTCGCTCACTCTGCTTTTCCCCGCTGATTTTCGTCGTCGTCGTCGTCGTCGTCCTCGTCGTCGTCGTCAACAGCAGAACGAACAGGAAGGTGTTTCGTTTGTCTGTTTCGCGTAACGTTTGCTGTTGTCGTTGTCGTCGTCGTTGTTGTCGTT
**************************************************..............((((((((((.......))).)))))))........(((((((((((((......((........))..((((.((.((.((.((....)).)).)).)).)))))))))))))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V049
head
...............................................................................................................................................................................................................CCGTAACCTTTGCTGTTGTGGTTGT................... 25 3 1 1.00 1 1 0
...........................................................................TGGAGGTGTCCGCTGAACG............................................................................................................................................................. 19 3 18 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6424:7406-7656 + dmo_600 GCAAATTTGTTTTGAAAT-TTGCAATGCTCGTTCC--------------CCG------------------------------------------------T----CGAGTGTCTGCTG-AAATTTT---CAATTGAATTC---GTTGTAAGATCCACA-GGCGAAT-------TGCCAAAAAGC-----------------------GAGTG---AGAC-GAAAAGGGGC----------------------------------------------------------------------------------------------------------------------------------------G-------ACTAAAAGCAGCA------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGGAGCAGCA--------------------------------GC-----------------------------------------------------------------------------------------------------AG---------------------------CAGTTGTCGTCTTG------CTTGTCCTTCCACAA---AGCAAACAGACAAAG-C--------GCA-------------TTGCAAACGACAACAGCAACAGCAGCAGCAACAAC------------------------------------------------AGCAA
droVir3 scaffold_13047:15687145-15687380 - GCAAATTTGTTTTGAAAT-TTGCAACGCTCGTCG--------------------------------------CTCGGTGCTCGATGCTCGTCGCC---TGT----CGAGTGTCTGTTA-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAAGAGGGC-------------------AGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------AAA-----------------CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------AG---------------------------CAGTTGTCGTCATG------CTTGCCCTTCCAAAA---AGCAAACAGACAAAGGC--------GCA-------------TTGCAAGCGACAACAG---CAACAGCAGCAACAAC------------------------------------------------AGCAA
droGri2 scaffold_14830:4317233-4317504 + GCAAATTTGTTTTGAAAT-TTGTAACGCTCGTCCT--------------GC----------GTTGCTTACTGCTCGTTGCTTGTCGCTCGTCGCC---TCT----CAACTGTCTGCAAAAAATTTT---CAATTGAATCC---GTTGTAAGATGCAGT-AACAAAT-------TGCCAAAAGAA-----------------------A------------AAAAATATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGGAGCGACGCAATGGGAGACTAAGAGTAGCAGTTGTCGTCATG------CTTGTCCTTCCAAAA---AGCAAACAGACAAAGGC--------GCA-------------GTGCAAGCAACAACAACAACAACAACAACAACAGC------------------------------------------------GGCAA
droWil2 scf2_1100000004921:1105068-1105238 + G-----TTGTTGTTAAAT-TTGCAG--------------------------------------------------------------------------------CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTTAGATGCAGA-AACAAAT-------TGCCAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------G-----TGG-----CAAGGGAAAGCGAA------------------------------------------------------------------------------------------------AAGAATAAA--------------------------------------------------------------AG---------------------------AAGTTGTCGTCGTAGTCGTCGTTGTCGTTCCTAAAGGCAGCAAACAGACAAAGGC-----------------------------------------------------------------------------------------------------------ACAAG
dp5 2:8204935-8205147 - GCAAATTTGTTTTTAAAT-TTGCAGTCCGAGTC-----------------------------------------------------------GCCCAATGT----CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAGAAGAAAGGGGGGCCACAAAGAGGGAGAGA-------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----------------------------------------------------------A------------------------------------------------------------------------------------------------AAGAATGTA--------------------------------------------------------------AA---------------------------AAGTTGTCGTCATTG---------------C-GAAGGCAAACAACAGACAAAGGC-----------------TGGCGCATTG---------------------GCAGCAACAAC------------------------------------------------G-AAA
droPer2 scaffold_0:2040962-2041174 - GCAAATTTGTTTTTAAAT-TTGCAGTCCGAGTC-----------------------------------------------------------GCCCAATGT----CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAGAAGAAAGGGGGGCCACAAAGAGGGAGAGA-------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----------------------------------------------------------A------------------------------------------------------------------------------------------------AAGAATGTA--------------------------------------------------------------AA---------------------------AAGTTGTCGTCATTG---------------C-GAAGGCAAACAACAGACAAAGGC-----------------TGGCGCATTG---------------------GCAGCAACAAC------------------------------------------------G-AAA
droAna3 scaffold_13340:22022833-22023004 + GCAAATTTGTTTTTAAAT-TTGCAGCACCAGTCCC--------------GAC------------------------------------------------T----GAAGTGTCTGCCG-AAATTTT---CAATTGAATTCGTCGTTGTAAGATGCAGAAAACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------AA---------------------------AAGTTGTCG-----------------------------AGCAAACAGACAAAGGC--------GCAATG------TGCAATG---------------------GCAACAAC--------------------------------------------------------
droBip1 scf7180000396583:161388-161561 - GCAAATTTGTTTTTAAAT-TTGCAGAACCAGTCCC--------------GGC------------------------------------------------T----GAAGTGTCTGCTG-AAATTTT---CAATTGAATTCGTCGTTGTAAGATGCAGAAAACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------AA---------------------------AAGTTGTCG-----------------------------AGCAAACAGACAAAGGC--------GCAATG------T---------------------------GCAATGGCAAC------------------------------------------------AACAG
droKik1 scf7180000302334:266278-266494 + A--AATTCCTTTTAAAGCCTTTCAGCCCCCCTCC---------------CAGACG-----------------------------------------AGTATCAATTTTTTGT-TG-TT-CAGTTTT---TGGGTAGGTTC---CA--------------GGCGGAT-------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---ATAAAAAG-AGTCGTTTCATGGAAAT---GCG-----AAG-----CGA-------------------------------------G-----------------CAGCAGCGGCAACA------AAAAAAATATTATT----------------------------------------------------------------------------------------------------------------------------CCG---------------GCCTAGCAGGA---GCCAAAAAGAG-----C----------A-------AATGCAT------CTGC---AACAGCAACAATCGCAGCAGC------------------------------------------------AGCAC
droFic1 scf7180000454077:2453705-2453974 - ---AATTTCTTTTGTGCT-TTGTGCAG-CCGCCG---------------CC-------------------------------------------------------GA-----CGCTT-CCATTTT---CCATTGCCGCT---GTCATAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGCTCCGCAGCAGCAACGCCAAAAGCA----A------CAACACCAACAGCAGCAAC---------------AGCAG-----------------CAACAGCAACAGCTACGGCAGCAACATTGCT--GCT--GAGCACATGCAATTAGTGCCAAATGTTTCCA-------TATTTTTGCGAAAA------------------------------------------------------------------CG-----------------------------GGGAAGCAGGTGGAGCG--------GCAATGCTG-ACCAC--AGCATTCAACAGCAGCAGCAGCAGCAGCAGCAGC------------------------------------------------TATAG
droEle1 scf7180000490564:1822197-1822414 - TTTCAGT---GCTTATCT-TCC----------------------------CGCCAACTGCAA--------------------------------------A-----------TTCCGG-AAATTTT-AATAATTGCACTT---GTTGCGC---CCCAA-AAAAAGA--------GACAAAAAGA-----------------------GATGG---ACAC-AGGAGTC-----------------------------------------------------------------------------------------------------------------------------------TCGGTGGCG-------AGTGAAAGAGACAGCGTGACAGATGCAGAGTGA---GTAAGAAGAAGCCTGCTTTTGGAAGT---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGACG-------------ATGAAGACGACAACAG---CAACAGCAGCAGCAAT------------------------------------------------AGCAA
droRho1 scf7180000779538:371441-371573 - GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---GA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC----------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:2631429-2631639 + TTTACATTGCAATTGCCA-TTGCTGCGGCCATCTT--------------CA----------G--------------------------------------C----CTCCTGCTGGGCA-AATTTTT---TCTCTGAATGC---CAT-------------AAACGAA-------CGCCAGCAAGC-----------------------A------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAT------------------------------------------------ATGCAA-----CGT-GCAGC------------------------AGCAGCAGCAGCAGCAGAAGCAACA--------------------------------------------------------ACATC--------------------------------------------------------------AG---------------------------CAACAGCAACCACAG--------------------------------------------------------------------------------------------------CGGCAAACACCATCAAACAGCAACTAACAACAACATCAACCACAACGAAA-GAA
droTak1 scf7180000415396:262885-263191 + TC------GTTTTGGAAA-TTGCCACCATGATC-----------------------------------------------------------GCCGTTCGT---------------------------------------------------TCGACAATT------------------------------------------------------------------------------------------------------------------------CCTTTACAGCTGTGTGTACCCAAACATTCATTTCGTGTGCTCAGCAACCACAAAAACTCATTGCAAACAA---------A--------------------------------------------------------------------------------A-----TGATCGACG---ATAATGCTAA-AACAATGGC---------AGCAGGAG-----------------CAGCAGCAGCAGCA------ACAACAACATTGTCTGGCT--GA-------------AAGACAATGTTTGGCGAGTCCCGCAT-TTAGCGACAATTAAGAAATCAAACGTGGCCTGTGCTA---GG---------------------------CAATTGT--------------------------AATGAAAACCGCTCACCAGGAG-----------------CAATA---------------------CAAAGACAGCAGCAAC------------------------------------------------AGCAA
droEug1 scf7180000408936:64328-64560 + TCCGCTGGGCTC---------------------------------------------------------------------------------------------------ACTGCT----------------CCAATTT---GTTGTGCGCTTGACAAAATGCAT-------GGCCAAACAGC-----------------------CGGCG---AACC-AGCAACTTGC------------------------------------------------------------------------------------------------AACTGC----------TGCA-----------------------ACATCAGCAAGAGCA---------------------------------------------------------------------A------CAGCAACTGCAGA---------------AGCAGAAGCAG-----------------CAGCAGCAGCAGCAGCGG------------TCCAATGCATGCGTTTGAAATTAAAACTGAAGTTTTGCACGC-----------------------------------------------------------------------------------------------------------------------------------T--------ACA-------------TTTAAAGCGGCAAACG-----------------------------------------------GAAAATGCAACAGCGGCAACACTAA
dm3 chr3R:23877132-23877269 + GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATCC---GTTGTTGGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCGA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC--------------------------------------------------------------------------------------------------------------AG
droSim2 3r:23275375-23275515 + GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATCC---GTTGTTGGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACGACGACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCGA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC--------------------------------------------------------------------------------------------------------------AG
droSec2 scaffold_6:1036310-1036516 - -----------------------------------------------------------------------------------------------------------------TGCTA-AAAATCT---AAATCAAAGTA---AATAAGCAAACCAAA-AGCGAATTCTGTGTTACCGAAACGAGAGC-------------------AAAA-------GC-TAAAAGAGCCCCTGAAAACAGCAATGACGATGGCCGCCTGTTATGCCAACTACGACATGTCGTC------CCTGTCGCACGGCATGTCG---------------------------------------------------------------------------------GCCCT------------------------------------------------GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------GCC-------------CTGCA-GCAGCAACAGCAGCAGCAGCAGCAACAGC------------------------------------------------AGCAG
droYak3 X:15109585-15109817 - GTGAAGTTG-----AAAC-TGGCACAATTGGATCGCCGTCGTCGTCAGCA---------------------------------------------------------------AAT-------------------------------CAAAATCCAAA-CCCAAAT-------CATTTAAAAACGAAATGCAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGCAAGCCTTCAGCGAAAGAGACCA--------------------------------------------------------------TCGTCG---ATAAC------------------------AGCAAGAGCTGCAGCAAAACCAAGA--------------------------------------------------------ATATT--------------------------------------------------------------TC---------------------------C---------------------------------------------GATAAAT-TGCAGAGCAACA-------AGTTT-----ATAATTC---AACAGCAGCAGCAGCAACAAC------------------------------------------------AACAA
droEre2 scaffold_4784:10941509-10941745 - A---ATATGCCCTACATT-TTGCTCAG-TGCTCG----------TCTTCCCGCCAACTGCAA--------------------------------------------------ATTCCG-GAATTTTTAATAATTGCACTT---GTTGCGC---CCCA--------------------AAAAAGAGACA-------------------AAAA-------GT-T----ATGG---------------------------------------------------------------------------------------------------------------------ACACAGGGGCCTCGCTGGCG-------AGCAAAAGAGACCGC---ACAAATGCAGAATGAGACGGAAAATGAAGCCGGCTCTTGGATGT---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGACG-------------ATGAAGACGACAACCGCAGCAGCAGAAGCAGCAGC------------------------------------------------AGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAAATTTGTTTTGAAAT-TTGCAATGCTCGTTCC--------------CCG------------------------------------------------T----CGAGTGTCTGCTG-AAATTTT---CAATTGAATTC---GTTGTAAGATCCACA-GGCGAAT-------TGCCAAAAAGC-----------------------GAGTG---AGAC-GAAAAGGGGC----------------------------------------------------------------------------------------------------------------------------------------G-------ACTAAAAGCAGCA------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGGAGCAGCA--------------------------------GC-----------------------------------------------------------------------------------------------------AG---------------------------CAGTTGTCGTCTTG------CTTGTCCTTCCACAA---AGCAAACAGACAAAG-C--------GCA-------------TTGCAAACGACAACAGCAACAGCAGCAGCAACAAC------------------------------------------------AGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACAAC------------------------------------------------AG...24200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGAGCAGCA--------------------------------GC-----------------------------------------------------------------------------------------------------A...................................................................................................................................................................................................19200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAGCAACAAC------------------------------------------------A....27200.051100000
droVir3
GCAAATTTGTTTTGAAAT-TTGCAACGCTCGTCG--------------------------------------CTCGGTGCTCGATGCTCGTCGCC---TGT----CGAGTGTCTGTTA-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAAGAGGGC-------------------AGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------AAA-----------------CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------AG---------------------------CAGTTGTCGTCATG------CTTGCCCTTCCAAAA---AGCAAACAGACAAAGGC--------GCA-------------TTGCAAGCGACAACAG---CAACAGCAGCAACAAC------------------------------------------------AGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACAG---CAACAGCAGCAA.........................................................2120.501000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC--------------------------------------------------------------------------------------------------------------AG---------------------------CAGTTGTC...............................................................................................................................................................2090.111000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---CAACAGCAGCAACA.......................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------CAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------AG---------------------------CAGTT..................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
GCAAATTTGTTTTGAAAT-TTGTAACGCTCGTCCT--------------GC----------GTTGCTTACTGCTCGTTGCTTGTCGCTCGTCGCC---TCT----CAACTGTCTGCAAAAAATTTT---CAATTGAATCC---GTTGTAAGATGCAGT-AACAAAT-------TGCCAAAAGAA-----------------------A------------AAAAATATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGGAGCGACGCAATGGGAGACTAAGAGTAGCAGTTGTCGTCATG------CTTGTCCTTCCAAAA---AGCAAACAGACAAAGGC--------GCA-------------GTGCAAGCAACAACAACAACAACAACAACAACAGC------------------------------------------------GGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
G-----TTGTTGTTAAAT-TTGCAG--------------------------------------------------------------------------------CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTTAGATGCAGA-AACAAAT-------TGCCAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------G-----TGG-----CAAGGGAAAGCGAA------------------------------------------------------------------------------------------------AAGAATAAA--------------------------------------------------------------AG---------------------------AAGTTGTCGTCGTAGTCGTCGTTGTCGTTCCTAAAGGCAGCAAACAGACAAAGGC-----------------------------------------------------------------------------------------------------------ACAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GCAAATTTGTTTTTAAAT-TTGCAGTCCGAGTC-----------------------------------------------------------GCCCAATGT----CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAGAAGAAAGGGGGGCCACAAAGAGGGAGAGA-------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----------------------------------------------------------A------------------------------------------------------------------------------------------------AAGAATGTA--------------------------------------------------------------AA---------------------------AAGTTGTCGTCATTG---------------C-GAAGGCAAACAACAGACAAAGGC-----------------TGGCGCATTG---------------------GCAGCAACAAC------------------------------------------------G-AAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GCAAATTTGTTTTTAAAT-TTGCAGTCCGAGTC-----------------------------------------------------------GCCCAATGT----CGAGTGTCTGTTG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAGAAGAAAGGGGGGCCACAAAGAGGGAGAGA-------GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----------------------------------------------------------A------------------------------------------------------------------------------------------------AAGAATGTA--------------------------------------------------------------AA---------------------------AAGTTGTCGTCATTG---------------C-GAAGGCAAACAACAGACAAAGGC-----------------TGGCGCATTG---------------------GCAGCAACAAC------------------------------------------------G-AAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GCAAATTTGTTTTTAAAT-TTGCAGCACCAGTCCC--------------GAC------------------------------------------------T----GAAGTGTCTGCCG-AAATTTT---CAATTGAATTCGTCGTTGTAAGATGCAGAAAACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------AA---------------------------AAGTTGTCG-----------------------------AGCAAACAGACAAAGGC--------GCAATG------TGCAATG---------------------GCAACAAC--------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCAAATTTGTTTTTAAAT-TTGCAGAACCAGTCCC--------------GGC------------------------------------------------T----GAAGTGTCTGCTG-AAATTTT---CAATTGAATTCGTCGTTGTAAGATGCAGAAAACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------AA---------------------------AAGTTGTCG-----------------------------AGCAAACAGACAAAGGC--------GCAATG------T---------------------------GCAATGGCAAC------------------------------------------------AACAGSizeHit CountTotal NormTotal
No Reads
droKik1
A--AATTCCTTTTAAAGCCTTTCAGCCCCCCTCC---------------CAGACG-----------------------------------------AGTATCAATTTTTTGT-TG-TT-CAGTTTT---TGGGTAGGTTC---CA--------------GGCGGAT-------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---ATAAAAAG-AGTCGTTTCATGGAAAT---GCG-----AAG-----CGA-------------------------------------G-----------------CAGCAGCGGCAACA------AAAAAAATATTATT----------------------------------------------------------------------------------------------------------------------------CCG---------------GCCTAGCAGGA---GCCAAAAAGAG-----C----------A-------AATGCAT------CTGC---AACAGCAACAATCGCAGCAGC------------------------------------------------AGCACSizeHit CountTotal NormTotal
No Reads
droFic1
---AATTTCTTTTGTGCT-TTGTGCAG-CCGCCG---------------CC-------------------------------------------------------GA-----CGCTT-CCATTTT---CCATTGCCGCT---GTCATAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGCTCCGCAGCAGCAACGCCAAAAGCA----A------CAACACCAACAGCAGCAAC---------------AGCAG-----------------CAACAGCAACAGCTACGGCAGCAACATTGCT--GCT--GAGCACATGCAATTAGTGCCAAATGTTTCCA-------TATTTTTGCGAAAA------------------------------------------------------------------CG-----------------------------GGGAAGCAGGTGGAGCG--------GCAATGCTG-ACCAC--AGCATTCAACAGCAGCAGCAGCAGCAGCAGCAGC------------------------------------------------TATAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTCAGT---GCTTATCT-TCC----------------------------CGCCAACTGCAA--------------------------------------A-----------TTCCGG-AAATTTT-AATAATTGCACTT---GTTGCGC---CCCAA-AAAAAGA--------GACAAAAAGA-----------------------GATGG---ACAC-AGGAGTC-----------------------------------------------------------------------------------------------------------------------------------TCGGTGGCG-------AGTGAAAGAGACAGCGTGACAGATGCAGAGTGA---GTAAGAAGAAGCCTGCTTTTGGAAGT---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGACG-------------ATGAAGACGACAACAG---CAACAGCAGCAGCAAT------------------------------------------------AGCAASizeHit CountTotal NormTotal
No Reads
droRho1
GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATTC---GTTGTAAGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---GA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTACATTGCAATTGCCA-TTGCTGCGGCCATCTT--------------CA----------G--------------------------------------C----CTCCTGCTGGGCA-AATTTTT---TCTCTGAATGC---CAT-------------AAACGAA-------CGCCAGCAAGC-----------------------A------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAT------------------------------------------------ATGCAA-----CGT-GCAGC------------------------AGCAGCAGCAGCAGCAGAAGCAACA--------------------------------------------------------ACATC--------------------------------------------------------------AG---------------------------CAACAGCAACCACAG--------------------------------------------------------------------------------------------------CGGCAAACACCATCAAACAGCAACTAACAACAACATCAACCACAACGAAA-GAASizeHit CountTotal NormTotal
No Reads
droTak1
TC------GTTTTGGAAA-TTGCCACCATGATC-----------------------------------------------------------GCCGTTCGT---------------------------------------------------TCGACAATT------------------------------------------------------------------------------------------------------------------------CCTTTACAGCTGTGTGTACCCAAACATTCATTTCGTGTGCTCAGCAACCACAAAAACTCATTGCAAACAA---------A--------------------------------------------------------------------------------A-----TGATCGACG---ATAATGCTAA-AACAATGGC---------AGCAGGAG-----------------CAGCAGCAGCAGCA------ACAACAACATTGTCTGGCT--GA-------------AAGACAATGTTTGGCGAGTCCCGCAT-TTAGCGACAATTAAGAAATCAAACGTGGCCTGTGCTA---GG---------------------------CAATTGT--------------------------AATGAAAACCGCTCACCAGGAG-----------------CAATA---------------------CAAAGACAGCAGCAAC------------------------------------------------AGCAASizeHit CountTotal NormTotal
No Reads
droEug1
TCCGCTGGGCTC---------------------------------------------------------------------------------------------------ACTGCT----------------CCAATTT---GTTGTGCGCTTGACAAAATGCAT-------GGCCAAACAGC-----------------------CGGCG---AACC-AGCAACTTGC------------------------------------------------------------------------------------------------AACTGC----------TGCA-----------------------ACATCAGCAAGAGCA---------------------------------------------------------------------A------CAGCAACTGCAGA---------------AGCAGAAGCAG-----------------CAGCAGCAGCAGCAGCGG------------TCCAATGCATGCGTTTGAAATTAAAACTGAAGTTTTGCACGC-----------------------------------------------------------------------------------------------------------------------------------T--------ACA-------------TTTAAAGCGGCAAACG-----------------------------------------------GAAAATGCAACAGCGGCAACACTAASizeHit CountTotal NormTotal
No Reads
dm3
GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATCC---GTTGTTGGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACG---ACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCGA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC--------------------------------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................G---ACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCGA---------------------------AAGT...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGGTT-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................CTGCCG-AAATTTT---CAATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCAAATTTGTTTTTAAAT-TTGC----------------------------------------------------------------------------------CGAGTGTCTGCCG-AAATTTT---CAATTGAATCC---GTTGTTGGATGCAGA-AACAAAT-------TGCCAAAAG-C-----------------------GAACGACGACAC-AAGAATGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCGA---------------------------AAGTTGT---------------------------A---AGCAAACAGACAAAGGC--------------------------------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
-----------------------------------------------------------------------------------------------------------------TGCTA-AAAATCT---AAATCAAAGTA---AATAAGCAAACCAAA-AGCGAATTCTGTGTTACCGAAACGAGAGC-------------------AAAA-------GC-TAAAAGAGCCCCTGAAAACAGCAATGACGATGGCCGCCTGTTATGCCAACTACGACATGTCGTC------CCTGTCGCACGGCATGTCG---------------------------------------------------------------------------------GCCCT------------------------------------------------GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------GCC-------------CTGCA-GCAGCAACAGCAGCAGCAGCAGCAACAGC------------------------------------------------AGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................GCAATGACGATGGCCGCCTGTTATGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
....................................................................................................................................................................................................................................................................................CATGTCGTC------CCTGTCGCACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................CCAAA-AGCGAATTCTGTGTTACCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
.......................................................................................................................................................................................................................................................................ATGCCAACTACGACATGTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................GTTATGCCAACTACGACATGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................ATTCTGTGTTACCGAAACGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-GCAGCAACAGCAGCA...................................................................19200.0510010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAACAGC------------------------------------------------.....25200.0510010
droYak3
GTGAAGTTG-----AAAC-TGGCACAATTGGATCGCCGTCGTCGTCAGCA---------------------------------------------------------------AAT-------------------------------CAAAATCCAAA-CCCAAAT-------CATTTAAAAACGAAATGCAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGCAAGCCTTCAGCGAAAGAGACCA--------------------------------------------------------------TCGTCG---ATAAC------------------------AGCAAGAGCTGCAGCAAAACCAAGA--------------------------------------------------------ATATT--------------------------------------------------------------TC---------------------------C---------------------------------------------GATAAAT-TGCAGAGCAACA-------AGTTT-----ATAATTC---AACAGCAGCAGCAGCAACAAC------------------------------------------------AACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------------------------------------------------------TC---------------------------C---------------------------------------------GATAAAT-TGCAGAGCAACA-------AGT...........................................................................................2813.00300000030000
.............................................................................................................................................................................................GCAAACC-------G------GG---ACAG-AGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00301110000000
.............................................................................................................................................................................................GCAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201100000000
................................................................................................................................................................................................AACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00201000010000
...................................................................................................................................................................................................................G---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200110000000
...........................................................................................................................................................................................ATGCAAACC-------G------GG---ACAG-AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
..............................................................................................................................................................................................CAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.....................................................................................................................................................................................AACGAAATGCAAACC-------G------GG---ACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................GGGCAAGCCTTCAGCGAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT--------------------------------------------------------------TC---------------------------C---------------------------------------------GATAAAT-TGCAGAGC.........................................................................................................2311.00100000010000
................................................................................................................................................................................................AACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................ACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................ACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................................................................................................................................................................................GCAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-------AGTTT-----ATAATTC---AACAGCAGC.................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TGCAGAGCAACA-------AGTTT-----ATAATT..............................................................................2511.00100000010000
..................................................................................................................................................................................................CC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................GGGCAAGCCTTCAGCGAAAGAGACCA--------------------------------------------------------------TC............................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGCAGAGCAACA-------AGTTT-----ATAATT..............................................................................2411.00101000000000
.............................................................................................................................................................................................GCAAACC-------G------GG---ACAG-AGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...................................................................................................................................................................................................................G---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCCTTCAGCGAAAGAGACCA--------------------------------------------------------------TCGTC.........................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCTGCAGCAAAACCAAG................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TGCAGAGCAACA-------AGTTT-----ATAATT..............................................................................2611.00100000010000
...........................................................................................................................................................................................................G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---ATAAC------------------------AGCAAGAGCTGCAGC.........................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..........................................................................................................................................................................................AATGCAAACC-------G------GG---ACAG-AGCGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................ATGCAAACC-------G------GG---ACAG-AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.....................................................................................................................................................................................AACGAAATGCAAACC-------G------GG---ACAG-AGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..................................................................................................................................................................................................CC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..............................................................................................................................................................................ATTTAAAAACGAAATGCAAACC-------G------GG---AC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACCA--------------------------------------------------------------TCGTCG---ATAAC------------------------AGCAAGA.................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGACCA--------------------------------------------------------------TCGTCG---ATAA.................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................GAAATGCAAACC-------G------GG---ACAG-AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GAGACCA--------------------------------------------------------------TCGTCG---ATAAC------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAT-TGCAGAGCAACA-------AGT...........................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-------AGTTT-----ATAATTC---AACAGCAGCAGC..............................................................2811.00100000010000
............................................................................................................................................................................................................................AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGGGCAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................................................................................................................................GCAAACC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................CAAGCCTTCAGCGAAAGAGACCA--------------------------------------------------------------TC............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................CC-------G------GG---ACAG-AGCGTTG-----------------------------------------------------------------------------------------------------------------------------------CTGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGCTGCAGCAAAACCAAGA--------------------------------------------------------.......................................................................................................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAAC------------------------------------------------AAC..21200.10202000000000
droEre2
A---ATATGCCCTACATT-TTGCTCAG-TGCTCG----------TCTTCCCGCCAACTGCAA--------------------------------------------------ATTCCG-GAATTTTTAATAATTGCACTT---GTTGCGC---CCCA--------------------AAAAAGAGACA-------------------AAAA-------GT-T----ATGG---------------------------------------------------------------------------------------------------------------------ACACAGGGGCCTCGCTGGCG-------AGCAAAAGAGACCGC---ACAAATGCAGAATGAGACGGAAAATGAAGCCGGCTCTTGGATGT---CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGACG-------------ATGAAGACGACAACCGCAGCAGCAGAAGCAGCAGC------------------------------------------------AGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:40 PM