dmo_6

GCCTCGAATAAGTGAAATCGTTTTCTTCCCACAAAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGGAGTTTTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTGAGGCGAAAGCATCCAGAAGGAAAACAGACAAAAGACCAAATGT *********************************.((((((((((((.((((((((((.((((.((((((((.....(((((......))))))))))))))))).)))))))))))).)))))).))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head	V110 male body	M046 female body	M060 embryo	V041 embryo
................................................................................................TGAAACCGTCCAAAACTGAGGC...................................................	22	0	1	18576.00	18576	9660	4641	2057	1725	468	25
................................................................................................TGAAACCGTCCAAAACTGAGG....................................................	21	0	1	15976.00	15976	8015	3791	2283	1865	20	2
................................................................................................TGAAACCGTCCAAAACTGAG.....................................................	20	0	1	760.00	760	351	155	122	131	1	0
................................................................................................TGAAACCGTCCAAAACTGAGGCT..................................................	23	1	1	487.00	487	231	110	43	100	3	0
................................................................................................TGAAACCGTCCAAAACTGAGGCA..................................................	23	1	1	296.00	296	144	81	19	52	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGT...................................................	22	1	1	259.00	259	165	57	23	14	0	0
................................................................................................TTAAACCGTCCAAAACTGAGGC...................................................	22	1	1	138.00	138	3	2	2	0	131	0
.................................................................................................GAAACCGTCCAAAACTGAGG....................................................	20	0	1	135.00	135	10	2	2	121	0	0
.................................................................................................GAAACCGTCCAAAACTGAGGC...................................................	21	0	1	129.00	129	10	2	1	116	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCTT.................................................	24	2	1	122.00	122	69	30	12	11	0	0
................................................................................................TGAAACCGTCCAACACTGAGGC...................................................	22	1	1	119.00	119	44	75	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAGGC...................................................	22	1	1	106.00	106	8	98	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGAGGC...................................................	22	1	1	104.00	104	25	75	0	0	4	0
................................................................................................TGAAACCGTCCAAAACTGA......................................................	19	0	1	99.00	99	56	30	5	8	0	0
................................................................................................TGAAACCGTCCATAACTGAGG....................................................	21	1	1	95.00	95	58	37	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAGG....................................................	21	1	1	92.00	92	10	80	1	1	0	0
................................................................................................TGAAACCGTCCAAACCTGAGGC...................................................	22	1	1	89.00	89	49	38	1	0	1	0
................................................................................................TGAAACCGTCCATAACTGAGGC...................................................	22	1	1	84.00	84	59	25	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGAGG....................................................	21	1	1	84.00	84	21	62	1	0	0	0
................................................................................................TGAAACCGTCCAACACTGAGG....................................................	21	1	1	84.00	84	23	61	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGA...................................................	22	1	1	83.00	83	49	21	5	7	1	0
................................................................................................TGAAACCGTCCAAAACTGCGG....................................................	21	1	1	66.00	66	19	47	0	0	0	0
................................................................................................TGAAACCGGCCAAAACTGAGGC...................................................	22	1	1	60.00	60	46	12	2	0	0	0
................................................................................................TGAAACCGTCCAAAACTGCGGC...................................................	22	1	1	60.00	60	22	37	0	1	0	0
................................................................................................TGAAACCGTCCAAACCTGAGG....................................................	21	1	1	60.00	60	31	29	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGTC...................................................	22	1	1	55.00	55	37	13	4	1	0	0
................................................................................................TGAAACCGTCCAAAGCTGAGGC...................................................	22	1	1	53.00	53	40	7	3	3	0	0
................................................................................................TGAAACCGTCCAAAACTGACG....................................................	21	1	1	48.00	48	20	27	1	0	0	0
................................................................................................TGAAACCGGCCAAAACTGAGG....................................................	21	1	1	37.00	37	27	10	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGTT..................................................	23	2	1	37.00	37	28	7	1	1	0	0
................................................................................................CGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	37.00	37	17	12	4	1	3	0
................................................................................................TGAAGCCGTCCAAAACTGAGGC...................................................	22	1	1	37.00	37	25	10	1	1	0	0
................................................................................................TGAAACCGTCCAAAACTGACGC...................................................	22	1	1	36.00	36	16	20	0	0	0	0
................................................................................................TGAAACCGTCTAAAACTGAGGC...................................................	22	1	1	35.00	35	11	22	1	0	0	1
................................................................................................TGAAACCGTCCAAAACTGATGC...................................................	22	1	1	35.00	35	16	12	6	0	1	0
...............................................................................................CTGAAACCGTCCAAAACTGAGG....................................................	22	1	1	34.00	34	18	10	2	4	0	0
...............................................................................................CTGAAACCGTCCAAAACTGAGGC...................................................	23	1	1	33.00	33	19	8	4	2	0	0
................................................................................................TGAAACCGTCCAGAACTGAGGC...................................................	22	1	1	32.00	32	15	12	2	2	0	1
................................................................................................CGAAACCGTCCAAAACTGAGG....................................................	21	1	1	31.00	31	17	7	6	1	0	0
................................................................................................TGAAACCGTCCAAAACCGAGG....................................................	21	1	1	31.00	31	14	16	1	0	0	0
................................................................................................TGAAACCGTCTAAAACTGAGG....................................................	21	1	1	30.00	30	6	23	1	0	0	0
................................................................................................TGAAACCGTCCGAAACTGAGG....................................................	21	1	1	30.00	30	21	3	0	6	0	0
................................................................................................TGAAACCGTCCAAAACTGATG....................................................	21	1	1	30.00	30	14	15	1	0	0	0
................................................................................................TGAGACCGTCCAAAACTGAGG....................................................	21	1	1	29.00	29	16	10	3	0	0	0
................................................................................................TGAAACCGCCCAAAACTGAGGC...................................................	22	1	1	29.00	29	21	5	1	1	1	0
................................................................................................TGAAACCGTCCGAAACTGAGGC...................................................	22	1	1	29.00	29	15	4	0	10	0	0
................................................................................................TGAAACCGTCCAAAACTGAGCC...................................................	22	1	1	28.00	28	22	3	3	0	0	0
................................................................................................TGAAACCGTCCAAAACCGAGGC...................................................	22	1	1	27.00	27	17	9	1	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGT....................................................	21	1	1	27.00	27	19	7	1	0	0	0
................................................................................................TAAAACCGTCCAAAACTGAGGC...................................................	22	1	1	27.00	27	12	6	3	2	4	0
................................................................................................TGAAACCGTCCAAAACTGAGGCC..................................................	23	0	1	27.00	27	13	8	2	2	2	0
................................................................................................TGAAACCGTCCAAGACTGAGGC...................................................	22	1	1	26.00	26	14	9	2	1	0	0
................................................................................................TGAAACCGTCCAAAACTGAGA....................................................	21	1	1	26.00	26	14	6	2	4	0	0
................................................................................................TGAAACCGTCCAAAACTCAGG....................................................	21	1	1	25.00	25	20	4	1	0	0	0
................................................................................................TGAAACCGCCCAAAACTGAGG....................................................	21	1	1	25.00	25	22	2	0	1	0	0
................................................................................................TGAAACTGTCCAAAACTGAGGC...................................................	22	1	1	24.00	24	13	9	2	0	0	0
................................................................................................TGAAACAGTCCAAAACTGAGG....................................................	21	1	1	24.00	24	17	7	0	0	0	0
................................................................................................TGAAACCGTCCAAAGCTGAGG....................................................	21	1	1	24.00	24	15	5	4	0	0	0
................................................................................................TGAAACCGTCCAAAACTCAGGC...................................................	22	1	1	23.00	23	15	6	1	1	0	0
................................................................................................TGAAGCCGTCCAAAACTGAGG....................................................	21	1	1	23.00	23	12	8	3	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCG..................................................	23	1	1	22.00	22	15	5	1	1	0	0
................................................................................................TGAAACCGTACAAAACTGAGGC...................................................	22	1	1	22.00	22	9	9	3	0	0	1
................................................................................................TGAAACCGTCCAAAAATGAGGC...................................................	22	1	1	22.00	22	18	4	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTAAGGC...................................................	22	1	1	22.00	22	16	6	0	0	0	0
................................................................................................TGACACCGTCCAAAACTGAGGC...................................................	22	1	1	21.00	21	10	10	0	1	0	0
................................................................................................TGAAACCGTCCAAAACTGAGAC...................................................	22	1	1	21.00	21	8	3	1	0	9	0
................................................................................................TGAAACCATCCAAAACTGAGGC...................................................	22	1	1	21.00	21	12	6	3	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGC....................................................	21	1	1	21.00	21	17	3	1	0	0	0
................................................................................................TGAAACCGTCCTAAACTGAGGC...................................................	22	1	1	20.00	20	11	6	0	3	0	0
................................................................................................TGAAACCGTCCAAGACTGAGG....................................................	21	1	1	20.00	20	13	4	2	1	0	0
................................................................................................TGAGACCGTCCAAAACTGAGGC...................................................	22	1	1	20.00	20	14	5	0	0	1	0
................................................................................................TGACACCGTCCAAAACTGAGG....................................................	21	1	1	19.00	19	5	13	1	0	0	0
................................................................................................TGAAACCGTCCAAAACTTAGGC...................................................	22	1	1	19.00	19	7	11	0	0	1	0
................................................................................................TGAAACCGTCCAAAACGGAGGC...................................................	22	1	1	18.00	18	12	6	0	0	0	0
................................................................................................TGAAACTGTCCAAAACTGAGG....................................................	21	1	1	18.00	18	10	6	1	1	0	0
................................................................................................TGAAACCGTCCAAAACTTAGG....................................................	21	1	1	18.00	18	9	7	2	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGTC...................................................	22	2	1	18.00	18	13	5	0	0	0	0
................................................................................................TGAAACAGTCCAAAACTGAGGC...................................................	22	1	1	18.00	18	10	7	0	0	1	0
................................................................................................TGAAACCGTCCAAAACTGGGG....................................................	21	1	1	18.00	18	14	3	0	1	0	0
................................................................................................TGAAACCATCCAAAACTGAGG....................................................	21	1	1	17.00	17	12	5	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGGGGC...................................................	22	1	1	17.00	17	10	4	0	2	1	0
................................................................................................TGAAACCGACCAAAACTGAGGC...................................................	22	1	1	17.00	17	16	1	0	0	0	0
................................................................................................TTAAACCGTCCAAAACTGAGG....................................................	21	1	1	17.00	17	0	2	3	4	8	0
..................................................CTTAGTTTTAGACGTGTTTTGGT................................................................................................	23	0	1	16.00	16	4	4	7	1	0	0
................................................................................................TGAAACCGTCAAAAACTGAGG....................................................	21	1	1	16.00	16	11	2	3	0	0	0
................................................................................................TGAAACCGTCCAGAACTGAGG....................................................	21	1	1	16.00	16	8	4	3	1	0	0
................................................................................................TGGAACCGTCCAAAACTGAGGC...................................................	22	1	1	16.00	16	8	4	0	4	0	0
................................................................................................TGAAACCGTCCCACACTGAGGC...................................................	22	2	1	16.00	16	2	14	0	0	0	0
................................................................................................TGATACCGTCCAAAACTGAGGC...................................................	22	1	1	16.00	16	2	1	0	1	12	0
................................................................................................TGAAACCGTCCAAAACAGAGG....................................................	21	1	1	15.00	15	11	3	1	0	0	0
................................................................................................TGAAACCGTCCTAAACTGAGG....................................................	21	1	1	15.00	15	11	4	0	0	0	0
................................................................................................TGAAACCGTCCAAAAATGAGG....................................................	21	1	1	15.00	15	8	4	1	1	0	1
................................................................................................AGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	15.00	15	7	7	0	0	1	0
................................................................................................TGAAACCGTCCAAAACTGAAGC...................................................	22	1	1	14.00	14	6	8	0	0	0	0
................................................................................................TGAAACCGTCCAATACTGAGGC...................................................	22	1	1	14.00	14	11	2	0	0	1	0
................................................................................................TGAAACCGTCCAAAACTAAGG....................................................	21	1	1	14.00	14	6	5	3	0	0	0
................................................................................................TGAAACCGTCAAAAACTGAGGC...................................................	22	1	1	14.00	14	9	3	1	0	1	0
................................................................................................TAAAACCGTCCAAAACTGAGG....................................................	21	1	1	14.00	14	4	2	6	1	1	0
................................................................................................TGAAAACGTCCAAAACTGAGGC...................................................	22	1	1	14.00	14	10	4	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAAG....................................................	21	1	1	13.00	13	5	7	1	0	0	0
................................................................................................TGGAACCGTCCATAACTGAGGC...................................................	22	2	1	13.00	13	6	7	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGGGG....................................................	21	2	1	13.00	13	12	1	0	0	0	0
................................................................................................GGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	13.00	13	7	5	0	0	1	0
..................................................CTTAGTTTTAGACGTGTTTTGG.................................................................................................	22	0	1	12.00	12	5	1	3	3	0	0
..................................................................................................AAACCGTCCAAAACTGAGGC...................................................	20	0	1	12.00	12	2	2	0	7	1	0
................................................................................................TGCAACCGTCCAAAACTGAGGC...................................................	22	1	1	12.00	12	6	3	0	1	2	0
................................................................................................TGGAACCGTCCAAAACTGAGG....................................................	21	1	1	11.00	11	7	4	0	0	0	0
................................................................................................TGAAACCGTCCAAAACGGAGG....................................................	21	1	1	11.00	11	8	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCAT.................................................	24	2	1	11.00	11	7	1	2	1	0	0
................................................................................................TGAAACCGTCCCACACTGAGG....................................................	21	2	1	11.00	11	0	11	0	0	0	0
................................................................................................TGAAACCGTTCAAAACTGAGGC...................................................	22	1	1	11.00	11	5	5	1	0	0	0
................................................................................................TGAAACCGTCCCAAACTGCGG....................................................	21	2	1	10.00	10	0	10	0	0	0	0
..............................................................................................TCTGAAACCGTCCAAAACTGAGGC...................................................	24	2	1	10.00	10	8	1	0	0	1	0
................................................................................................GGAAACCGTCCAAAACTGAGG....................................................	21	1	1	10.00	10	7	3	0	0	0	0
................................................................................................TGAAACCGTCCAAATCTGAGGC...................................................	22	1	1	10.00	10	9	0	0	1	0	0
.................................................................................................GAAACCGTCCAAAACTGAGGCT..................................................	22	1	1	10.00	10	2	0	0	7	1	0
................................................................................................TGAAAGCGTCCAAAACTGAGGC...................................................	22	1	1	10.00	10	8	2	0	0	0	0
................................................................................................TGAAAACGTCCAAAACTGAGG....................................................	21	1	1	10.00	10	6	3	1	0	0	0
................................................................................................TCAAACCGTCCAAAACTGAGGC...................................................	22	1	1	10.00	10	6	1	1	1	1	0
................................................................................................TGAAACCGTCCAAAATTGAGG....................................................	21	1	1	9.00	9	5	2	2	0	0	0
................................................................................................TGAAACCTTCCAAAACTGAGGC...................................................	22	1	1	9.00	9	4	2	3	0	0	0
................................................................................................TGACACCGTCCATAACTGAGGC...................................................	22	2	1	9.00	9	2	7	0	0	0	0
..................................................................................................AAACCGTCCAAAACTGAGG....................................................	19	0	1	9.00	9	2	2	0	5	0	0
................................................................................................TGAAACCGACCAAAACTGAGG....................................................	21	1	1	9.00	9	7	2	0	0	0	0
................................................................................................TGAAATCGTCCAAAACTGAGGC...................................................	22	1	1	9.00	9	6	2	1	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCTTT................................................	25	3	1	9.00	9	4	2	2	1	0	0
................................................................................................TGAACCCGTCCAAAACTGAGG....................................................	21	1	1	8.00	8	4	3	0	1	0	0
................................................................................................TGAAAGCGTCCATAACTGAGG....................................................	21	2	1	8.00	8	6	2	0	0	0	0
................................................................................................TGAAACCGTACAAAACTGAGG....................................................	21	1	1	8.00	8	6	1	1	0	0	0
................................................................................................TGAAACCGTCCACACCTGAGGC...................................................	22	2	1	8.00	8	0	8	0	0	0	0
................................................................................................TGAAACCGTCCAAACCTGCGG....................................................	21	2	1	8.00	8	5	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACAGAGGC...................................................	22	1	1	8.00	8	6	2	0	0	0	0
.................................................................................................GAAACCGTCCAAAACTGAG.....................................................	19	0	1	8.00	8	0	0	0	8	0	0
................................................................................................TGAAACCGTCCAAAACCGACGC...................................................	22	2	1	7.00	7	2	5	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGG...................................................	22	1	1	7.00	7	3	1	0	3	0	0
................................................................................................TGAAAGCGTCCAAAACTGAGG....................................................	21	1	1	7.00	7	6	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCCT.................................................	24	1	1	7.00	7	4	3	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGATTC...................................................	22	3	1	7.00	7	2	5	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGCGG....................................................	21	2	1	7.00	7	3	4	0	0	0	0
................................................................................................TGAAATCGTCCAAAACTGAGG....................................................	21	1	1	7.00	7	4	2	0	1	0	0
................................................................................................TGAAACCGTGCAAAACTGAGGC...................................................	22	1	1	7.00	7	5	1	1	0	0	0
................................................................................................TGAAACCGGCCATAACTGAGG....................................................	21	2	1	7.00	7	6	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGTGGC...................................................	22	1	1	7.00	7	4	3	0	0	0	0
................................................................................................TGAAACCTTCCAAAACTGAGG....................................................	21	1	1	7.00	7	1	0	6	0	0	0
................................................................................................TGAAACCGGCCAAAACGGAGGC...................................................	22	2	2	6.50	13	8	5	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGGCT..................................................	23	2	1	6.00	6	2	4	0	0	0	0
................................................................................................TGACACCGTCCATAACTGAGG....................................................	21	2	1	6.00	6	1	5	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGCGGC...................................................	22	2	1	6.00	6	3	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGACTC...................................................	22	2	1	6.00	6	4	2	0	0	0	0
................................................................................................TGAAACCGTCCAACACTGCGG....................................................	21	2	1	6.00	6	1	5	0	0	0	0
................................................................................................TGAAACCGTCCACCACTGAGGC...................................................	22	2	1	6.00	6	0	6	0	0	0	0
................................................................................................TGAAACCGTCCCAACCTGAGGC...................................................	22	2	1	6.00	6	0	6	0	0	0	0
................................................................................................TGAAACCGTCCAACACTGCGGC...................................................	22	2	1	6.00	6	1	5	0	0	0	0
................................................................................................TGAAACCCTCCAAAACTGAGGC...................................................	22	1	1	6.00	6	1	5	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGGT...................................................	22	2	1	6.00	6	3	3	0	0	0	0
................................................................................................TGAAACCGTCCAAACCTGCGGC...................................................	22	2	1	6.00	6	1	5	0	0	0	0
................................................................................................TGAAACCGTTCAAAACTGAGG....................................................	21	1	1	6.00	6	2	3	1	0	0	0
................................................................................................TGAAACCGTGCAAAACTGAGG....................................................	21	1	1	6.00	6	3	2	1	0	0	0
................................................................................................TGAAACCGGCCAAAACAGAGG....................................................	21	2	1	5.00	5	3	2	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGAG.....................................................	20	1	1	5.00	5	3	2	0	0	0	0
................................................................................................TGAAACCGTCCAACCCTGAGGC...................................................	22	2	1	5.00	5	3	2	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGCGGC...................................................	22	2	1	5.00	5	1	4	0	0	0	0
................................................................................................TGAAACCGTCCAATACTGAGG....................................................	21	1	1	5.00	5	4	1	0	0	0	0
................................................................................................TGAAAGCGTCCATAACTGAGGC...................................................	22	2	1	5.00	5	2	3	0	0	0	0
................................................................................................TGAAACCGTCCCAACCTGAGG....................................................	21	2	1	5.00	5	1	4	0	0	0	0
................................................................................................TGAAACCGTCCAACACCGAGG....................................................	21	2	1	5.00	5	3	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGTGG....................................................	21	1	1	5.00	5	5	0	0	0	0	0
................................................................................................TGTAACCGTCCAAAACTGAGGC...................................................	22	1	1	5.00	5	2	2	1	0	0	0
................................................................................................TGAAACCGTCCAACACTGAG.....................................................	20	1	1	5.00	5	2	3	0	0	0	0
................................................................................................TGAAACCGTCCAACACCGAGGC...................................................	22	2	1	5.00	5	2	3	0	0	0	0
................................................................................................TGAAACCGGCCAAAACGGAGG....................................................	21	2	2	4.50	9	7	2	0	0	0	0
...............................................................................................TTGAAACCGTCCAAAACTGAGG....................................................	22	0	1	4.00	4	0	1	0	3	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCTA.................................................	24	1	1	4.00	4	1	0	1	2	0	0
...................................................................................................AACCGTCCAAAACTGAGG....................................................	18	0	1	4.00	4	2	0	0	2	0	0
.................................................................................................GAAACCGTCCAAAACTGAGGT...................................................	21	1	1	4.00	4	0	0	0	4	0	0
................................................................................................TGAAACCGTCCAACACTGAGTC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAATTGAGGC...................................................	22	1	1	4.00	4	3	1	0	0	0	0
................................................................................................TGAAACCGTCCTTAACTGAGG....................................................	21	2	1	4.00	4	4	0	0	0	0	0
................................................................................................TGAAACCGTCCCCAACTGAGGC...................................................	22	2	1	4.00	4	0	4	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAGGCT..................................................	23	2	1	4.00	4	1	3	0	0	0	0
................................................................................................TTATACCGTCCAAAACTGAGGC...................................................	22	2	1	4.00	4	0	0	0	0	4	0
................................................................................................TGAAACCGTCCACAACTGAGGCA..................................................	23	2	1	4.00	4	1	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGT......................................................	19	1	1	4.00	4	2	2	0	0	0	0
................................................................................................TGCAACCGTCCAAAACTGAGG....................................................	21	1	1	4.00	4	2	1	1	0	0	0
................................................................................................TCAAACCGTCCAAAACTGAGG....................................................	21	1	1	4.00	4	1	2	1	0	0	0
................................................................................................TGAAACCGTCCAAACCTGAGC....................................................	21	2	1	4.00	4	4	0	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGATGC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAG.....................................................	20	1	1	4.00	4	1	3	0	0	0	0
................................................................................................TGACACCGTCCATAACTGAGT....................................................	21	3	1	4.00	4	3	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGCG.....................................................	20	1	1	4.00	4	2	2	0	0	0	0
................................................................................................TGGAACCGTCCATAACTGAGG....................................................	21	2	1	4.00	4	3	1	0	0	0	0
................................................................................................TGAAACCGTCCAACACTGACGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACCGACG....................................................	21	2	1	4.00	4	1	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGATTC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
................................................................................................AGAAACCGTCCAAAACTGAGG....................................................	21	1	1	4.00	4	3	0	1	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGT....................................................	21	2	1	4.00	4	2	2	0	0	0	0
................................................................................................TGAAACCGTCCAACCCTGAGG....................................................	21	2	1	4.00	4	1	3	0	0	0	0
................................................................................................TGAAACCGTCCAAATCTGAGG....................................................	21	1	1	4.00	4	2	1	1	0	0	0
................................................................................................TGAAACCGTCCACAACTGATGC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
................................................................................................TGAAACCGGCCAAAACAGAGGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGGGTC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCCTCCAAAACTGAGG....................................................	21	1	1	3.00	3	2	0	0	1	0	0
................................................................................................TGAAAGCGTCCATAACTGATGC...................................................	22	3	1	3.00	3	1	2	0	0	0	0
................................................................................................TGACACCGTCCACAACTGAGGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCCA.................................................	24	0	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCTTAACTGAGGC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCGAAAACTGAGGC...................................................	22	1	1	3.00	3	2	0	1	0	0	0
................................................................................................TGAAACCGTCCGAAACAGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TCAAACCGTCCAAAACTGAGCC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCAAACATGAGGC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCTTCCAAAACTGATGC...................................................	22	2	1	3.00	3	0	2	1	0	0	0
................................................................................................TGTAACCGTCCAAAACTGAGG....................................................	21	1	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCCCTAACTGAGGC...................................................	22	2	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGGCCATAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................AGAAACCGTCCAAAACTGAG.....................................................	20	1	1	3.00	3	1	0	1	1	0	0
................................................................................................TGCAACCGTCCCAAACTGAGG....................................................	21	2	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGGCCAAAACTGAGGT...................................................	22	2	1	3.00	3	2	0	1	0	0	0
................................................................................................TGAAACCGTCCCACACTGCGGC...................................................	22	3	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGTCCAAACCCGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCAAAAACAGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
...................................................................................................AACCGTCCAAAACTGAGGC...................................................	19	0	1	3.00	3	0	0	0	1	2	0
................................................................................................TCAAACCGTCCATAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACGGTGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTACAAACCTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TTAAACCGTCCAAAACTGAGT....................................................	21	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACAGCCCAAAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGCC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCCCAACTGAGG....................................................	21	2	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGTCCAAACCTGACGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
................................................................................................TGAAAACGTCCAAAACTGAGCC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGCGGT...................................................	22	2	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTTCGGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACCGAG.....................................................	20	1	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCAACACTCAGGC...................................................	22	2	1	3.00	3	2	0	0	0	0	1
................................................................................................TGGAAGCGTCCAAAACTGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGCTTTT...............................................	26	3	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCGAAACAGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACCAAGG....................................................	21	2	1	3.00	3	1	2	0	0	0	0
................................................................................................TGAAACCGTCCAACACTGACTC...................................................	22	3	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCTAAAACTGAGGT...................................................	22	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCCAACACTGAGT....................................................	21	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCCATACCTGAGG....................................................	21	2	1	3.00	3	1	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTTATGC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAACCCGTCCAAAACTGAGGC...................................................	22	1	1	3.00	3	2	1	0	0	0	0
................................................................................................TGAAACCGTCCACACCTGAGG....................................................	21	2	1	3.00	3	0	3	0	0	0	0
................................................................................................TGAAACCGGCCAAGACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCGAAACTGAGGCT..................................................	23	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGAG.....................................................	20	1	1	3.00	3	2	1	0	0	0	0
................................................................................................AGAAACCGTCCAAAACTGCGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
................................................................................................TGAAACTGTCCAAAAATGAGGC...................................................	22	2	3	2.67	8	6	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACGCAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGAGGCT..................................................	23	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGAGGAA..................................................	23	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAAGTGAGGC...................................................	22	1	1	2.00	2	1	0	0	1	0	0
................................................................................................TGAAACGGTCCAAAACTGAGG....................................................	21	1	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCCAAACCGAGGC...................................................	22	2	1	2.00	2	0	2	0	0	0	0
................................................................................................TGAAACCGTCCAAACCTGGGGC...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTACGAAACTGAGG....................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCATCCAAAACTGACGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGACACCGTCCAAAACTGAGGT...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACGGTCCAAAACTGAGGC...................................................	22	1	1	2.00	2	0	0	1	0	1	0
................................................................................................TGAAACCGTCCTAAACCGAGGC...................................................	22	2	1	2.00	2	1	0	0	0	0	1
...............................................................................................CTGAAACCGTCCAAAACTGAG.....................................................	21	1	1	2.00	2	1	0	1	0	0	0
................................................................................................TAAAACCGTCCGAAACTGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGGAACCGTCCATAACTGGGGC...................................................	22	3	2	2.00	4	3	1	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAGGT...................................................	22	2	1	2.00	2	0	2	0	0	0	0
.................................................................................................TGAACCGTCCAAAACTGAGGC...................................................	21	2	1	2.00	2	1	0	0	0	1	0
................................................................................................TGAAAACGGCCAAAACTGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAAGCGTCCAAAACTGAGTC...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCTTCCAAAACTTACGC...................................................	22	3	1	2.00	2	0	2	0	0	0	0
................................................................................................TGAAACCGTCCAGAACTGAGGT...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCAAGACTGAGGCT..................................................	23	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGAGGG...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGTAACAGTCCAAAACTGAGG....................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................................................CGAAACCGTCCAAAACTGAGGCT..................................................	23	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCTGAACTGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCCTCCAAAACCGAGG....................................................	21	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGACGA...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTCTGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TCAAACCGTCAAAAACTGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCCAATCTCAGGC...................................................	22	3	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAACACCGAGTC...................................................	22	3	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTGACGCA..................................................	23	2	1	2.00	2	0	2	0	0	0	0
................................................................................................TGAAACCGTCCAAAACTCAG.....................................................	20	1	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAAATCTGACGC...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAATAATGAGG....................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCACAACCGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGCCCAAAACTCAGG....................................................	21	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGCCCACAACTGAGGC...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGACG....................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAAGCGTCCAAAACCGAGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCCAAACTGAGGCA..................................................	23	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCAAACCTGACG....................................................	21	2	1	2.00	2	2	0	0	0	0	0
..............................................................................................TATGAAACCGTCCAAAACTGAGG....................................................	23	2	1	2.00	2	0	0	0	2	0	0
................................................................................................TGAAACCGTCCGAAACTGATGC...................................................	22	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCGGAAATGAGG....................................................	21	3	2	2.00	4	3	1	0	0	0	0
................................................................................................TGAAACCGTCCACAACTGAGGT...................................................	22	2	1	2.00	2	0	2	0	0	0	0
................................................................................................TGAAACCGTCCGGAACTGAGG....................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................................................TGAAACCGTCCATAACTGGGGC...................................................	22	2	1	2.00	2	2	0	0	0	0	0
................................................................................................TGAAACCGTCCAGAAAAGAGGC...................................................	22	3	1	2.00	2	2	0	0	0	0	0
................................................................................................TGACACCGTCCAACACTGAGGC...................................................	22	2	1	2.00	2	0	2	0	0	0	0

CGGAGCTTATTCACTTTAGCAAAAGAAGGGTGTTTTACGGGTGTTACCTAGAATCAAAATCTGCACAAAACCACACGAACCCTCAAAACAAGGCTAACTTTGGCAGGTTTTGACTCCGGTTAACACTCCGCTTTCGTAGGTCTTCCTTTTGTCTGTTTTCTGGTTTACA **********************************.((((((((((((.((((((((((.((((.((((((((.....(((((......))))))))))))))))).)))))))))))).)))))).))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V056 head	V049 head
.................................................................................................CTTTGGGAGGTTGTGAATC.....................................................	19	3	12	3.33	40	22	17	0	0	1
.................................................................................................CTTTGGGAGGTTGTGAAT......................................................	18	3	20	1.70	34	34	0	0	0	0
....................................ACGGGAGTTACCTAGGAGCAA................................................................................................................	21	3	1	1.00	1	0	1	0	0	0
....................................CCGGGTGTTACCTAGCATC..................................................................................................................	19	2	2	0.50	1	0	0	1	0	0
....................................CCGGGTGTTATCTAGCATC..................................................................................................................	19	3	15	0.47	7	0	0	7	0	0
.......................AGTAGGGTGTTTTACGTGAGT.............................................................................................................................	21	3	6	0.17	1	0	0	0	1	0
............................GGTGTTTTACGGATGTTAT..........................................................................................................................	19	2	9	0.11	1	0	0	1	0	0

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6680:22273653-22273821 +	dmo_6	confident	GCCTCGAATAAGTG------------AAATCGTTTT-CTTCCCAC--------------------AAAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAG-----------------AAGGAAAACAG-ACAAAAGACCAAATGT
droVir3	scaffold_13049:17242380-17242542 +	dvi-mir-957	Known_mirbase	ATAGAAAATATTTA---------ATAATATTATTTC-CTAA-C-------------------TAGATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCAAATA--------------CTAAAA--CAAAA----------TATGT
droGri2	scaffold_15110:14941993-14942177 -	dgr_26	candidate-rescued	GTCTCAAATGT--GCAAATCGTAATAATA---GTTACATAA-CACGAAAAAG----------TAAAGAATACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCAAATATCTTACAAATTAAATAAA-------------------AATGT
droWil2	scf2_1100000004511:7262443-7262623 +	dwi_5	confident	GTCCCCAATTTTTG------------TATGTGTTTT-CTACGCATA------AATCTCTCGCATCAT-ATATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCAT--------------------GAAAACAAAAGAAGAGACCAAA---
dp5	XR_group8:186467-186581 -	dps-mir-957	Known_mirbase	---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAA-----------------CCAAAAA--A------------------
droPer2	scaffold_80:80380-80500 +	dpe_9	confident	AT---------------------------------------------------------------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAA-----------------CCAAAAA--A------------------
droAna3	scaffold_13337:22247673-22247786 -	dan_6	confident	AT---------------------------------------------------------------ATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAA-----------------------A--A------------------
droBip1	scf7180000396426:572739-572843 +			---------------------------------------------------------------------TGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------
droKik1	scf7180000302808:850791-850911 -			TCTCCA---------------------------------TA-C-------------------AGAGTGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTA----------------------------------------------
droFic1	scf7180000453830:518581-518693 +			----------------------------------------------------------------------GCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AGCG-A-TATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTAA-----------------CCAAAA--CAG-----------------
droEle1	scf7180000491199:234626-234730 +			---------------------------------------------------------------------TGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------
droRho1	scf7180000779133:19472-19586 +			---------------------------------------------------------------------TGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAA-----------------CCAAAAA--AC-----------------
droBia1	scf7180000302377:742028-742133 +			A--------------------------------------------------------------------TGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-G-AATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTA----------------------------------------------
droTak1	scf7180000415491:455697-455801 -			---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------
droEug1	scf7180000409801:98863-98965 -			---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATC------------------------------------------------
dm3	chr3L:22511287-22511391 -	dme-mir-957	Known_mirbase	---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----------------------------------------------
droSim2	3l:22030965-22031069 -	dsi-mir-957	Known_mirbase	---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------
droSec2	scaffold_11:2446961-2447065 -	dse_9	confident	---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------
droYak3	3L:22971977-22972081 -	dya_2	confident	---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-A-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----------------------------------------------
droEre2	scaffold_4784:22180744-22180848 -	der_4	confident	---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCCTCGAATAAGTG------------AAATCGTTTT-CTTCCCAC--------------------AAAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAG-----------------AAGGAAAACAG-ACAAAAGACCAAATGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	18576.00	18576	1725	25	4641	9660	468	2057
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	15976.00	15976	1865	2	3791	8015	20	2283
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	760.00	760	131	0	155	351	1	122
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	487.00	487	100	0	110	231	3	43
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	296.00	296	52	0	81	144	0	19
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	259.00	259	14	0	57	165	0	23
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	135.00	135	121	0	2	10	0	2
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	129.00	129	116	0	2	10	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	122.00	122	11	0	30	69	0	12
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	99.00	99	8	0	30	56	0	5
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	83.00	83	7	0	21	49	1	5
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	37.00	37	1	0	7	28	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	27.00	27	0	0	7	19	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	27.00	27	2	0	8	13	2	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	26.00	26	4	0	6	14	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	22.00	22	1	0	5	15	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	21.00	21	0	0	3	17	0	1
...................................................................................CTTAGTTTTAGACGTGTTTTGGT......................................................................................................................	23	1	16.00	16	1	0	4	4	0	7
...................................................................................CTTAGTTTTAGACGTGTTTTGG.......................................................................................................................	22	1	12.00	12	3	0	1	5	0	3
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	12.00	12	7	0	2	2	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	11.00	11	1	0	1	7	0	2
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	10.00	10	7	0	0	2	1	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	9.00	9	5	0	2	2	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	9.00	9	1	0	2	4	0	2
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	8.00	8	8	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	7.00	7	3	0	1	3	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	7.00	7	0	0	3	4	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGG.......................................................................	22	1	4.00	4	3	0	1	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	1	4.00	4	2	0	0	2	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGT......................................................................	21	1	4.00	4	4	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	1	4.00	4	0	0	2	2	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	3.00	3	0	0	0	3	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	3.00	3	1	0	0	0	2	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	2.00	2	0	0	0	2	0	0

droVir3

ATAGAAAATATTTA---------ATAATATTATTTC-CTAA-C-------------------TAGATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCAAATA--------------CTAAAA--CAAAA----------TATGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	126083.00	126083	2994	31314	889	945	387	25	474	14	312	25	60	33	35	150	2497	1133	638	1374	1188	562	13	1459	1780	271	391	441	570	625	43	55	22	72	50	15	183	88	32	91	275	15	10	18	29	4	2	5	2	5	6	6	6	10	2	7	6	32	28	773	187	89	5445	954	0	72	210	1428	1429	7451	9195	7987	5801	1804	3591	9513	5347	1734	1931	4158	5266
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	63068.00	63068	799	6421	1801	162	149	29	209	11	180	15	40	94	155	308	762	371	189	432	460	199	9	510	1025	164	277	280	414	283	26	32	8	29	164	16	348	143	117	179	154	6	2	10	1	2	5	5	0	9	6	1	7	0	2	2	1	2	4	538	13	28	7368	1758	0	29	76	3752	3543	5494	1298	1528	796	310	566	1121	3182	2128	2475	4288	5748
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	3728.00	3728	98	1087	192	2	14	4	13	0	6	0	2	2	5	2	112	68	49	79	130	65	0	154	103	27	14	7	24	11	4	2	0	4	4	0	25	10	9	10	28	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	1	652	157	0	0	5	67	75	54	24	44	14	7	9	32	51	26	26	47	64
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	3133.00	3133	221	1526	35	7	15	1	7	0	8	0	0	0	0	0	64	36	22	38	32	19	0	46	64	5	8	8	16	9	1	1	1	3	2	0	10	3	1	3	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	2	0	83	15	0	1	4	30	23	229	37	27	35	10	11	35	154	27	28	61	82
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	2922.00	2922	12	64	25	1	16	2	30	0	3	0	2	2	7	19	82	40	18	44	22	26	0	53	61	9	32	52	39	55	0	1	0	1	26	1	63	33	15	22	24	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	95	6	0	13	10	97	92	445	54	63	28	16	10	51	393	112	103	175	255
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	1794.00	1794	121	1380	13	0	2	0	1	0	0	0	0	0	0	0	8	7	4	4	7	9	0	2	5	1	3	1	1	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	94	5	0	0	0	4	5	3	11	23	11	6	10	22	6	2	1	5	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	1671.00	1671	10	36	9	8	26	1	36	0	12	0	1	1	4	3	12	9	7	13	8	1	0	7	6	27	26	24	31	24	2	2	0	1	2	0	11	5	5	9	28	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	35	6	0	5	23	5	1	16	239	210	264	56	130	239	14	2	3	6	6
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAA....................................................................	24	1	1619.00	1619	0	0	5	0	0	0	4	0	0	0	0	0	5	5	2	0	1	0	0	0	0	0	1	3	32	19	30	23	0	0	0	0	28	0	53	42	29	33	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	10	12	99	99	336	12	10	5	3	0	5	257	67	77	118	166
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	931.00	931	2	35	6	5	0	0	0	0	5	0	0	1	2	4	6	2	4	2	2	2	0	4	4	1	2	1	1	2	0	0	0	0	1	0	3	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	43	5	0	0	1	71	70	152	10	0	1	0	0	4	122	53	49	104	140
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	819.00	819	96	296	7	5	4	4	2	0	1	1	0	0	0	0	6	6	1	1	4	2	3	4	3	1	2	3	0	4	2	1	1	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	7	5	0	1	2	5	6	18	60	55	36	5	45	62	12	3	6	16	8
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	631.00	631	33	254	4	0	0	0	0	0	0	1	0	0	0	0	3	2	2	2	3	1	0	4	7	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	9	1	0	1	0	5	6	35	43	35	36	12	29	48	16	3	1	8	7
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	395.00	395	29	257	2	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	3	24	21	16	10	9	6	2	1	2	1	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	304.00	304	2	69	68	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	0	0	0	0	2	4	20	25	21	15	12	31	5	1	2	3	8
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	1	284.00	284	23	260	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	214.00	214	0	12	144	1	0	0	2	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	1	0	2	4	6	3	0	1	4	0	4	2	2	13
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	201.00	201	1	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	32	18	21	2	0	6	0	2	3	32	2	8	29	24
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	187.00	187	2	21	3	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	2	1	2	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	18	4	0	0	0	18	15	16	1	0	0	0	1	0	5	10	9	21	27
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	112.00	112	11	17	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	2	6	8	5	5	15	2	5	16	1	2	0	7	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	110.00	110	11	63	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	2	1	1	0	3	3	0	0	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	1	0	6	4	1	0	0	1	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTA....................................................................	24	1	108.00	108	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	0	1	1	1	3	0	0	0	0	1	0	1	5	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	5	29	0	2	3	1	0	0	21	3	1	4	6
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	93.00	93	12	57	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	2	1	6	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.....................................................................	23	1	74.00	74	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	8	3	10	0	0	0	0	2	0	3	0	4	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	6	9	0	3	3	2	1	0	0	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	73.00	73	2	0	0	0	1	0	2	0	0	0	0	0	0	1	3	0	1	0	0	4	0	5	2	0	1	0	2	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	4	11	0	0	1	1	0	0	11	1	2	5	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTAA....................................................................	24	1	60.00	60	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	1	1	0	0	0	0	1	0	3	3	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	1	6	7	0	1	0	1	0	7	0	2	4	4
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC....................................................................	24	1	60.00	60	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	13	2	2	0	0	0	1	9	4	9	3	8
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	1	57.00	57	1	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	48.00	48	1	6	0	1	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	2	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	47.00	47	2	12	1	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	1	3	2	0	4	0	0	1	0	1	0	0	0	1
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	45.00	45	1	21	5	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	1	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	0	3	3	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	34.00	34	0	1	1	0	0	0	0	0	0	0	0	0	1	0	4	0	1	0	0	0	0	0	0	0	1	0	2	2	0	0	0	1	0	0	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	2	1	3	0	0	3	1	0	0	1	1
....................................................................................................................................TGAAACCGTCCAAAAC............................................................................	16	1	32.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC....................................................................	24	1	30.00	30	13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	6	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	22.00	22	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	2	5	0	3	1	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	22.00	22	3	11	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0
...................................................................................CTTAGTTTTAGACGTGTTTTGG.......................................................................................................................	22	1	22.00	22	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAA........................................................................	20	1	21.00	21	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	2	0	1	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAT...................................................................	25	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	3	0	0	0	0	0	0	1	2	1	4	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAAA....................................................................	24	2	18.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	7	0	0	0	0	0	0	3	1	0	2	5
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	17.00	17	0	1	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	16.00	16	0	2	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0
...................................................................................CTTAGTTTTAGACGTGTTTTGGT......................................................................................................................	23	1	16.00	16	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	15.00	15	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	1	15.00	15	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC....................................................................	24	1	14.00	14	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	13.00	13	1	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTAGACGTGTTTTGGTC.....................................................................................................................	24	1	10.00	10	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTTA....................................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGTT......................................................................	22	1	9.00	9	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAG...................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	1	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAC...................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	3	0	0	0	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGC.........................................................................	19	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	8.00	8	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................GTGCTTG-A-AGTT-T-TGTTCCGAT............................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGT......................................................................	21	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	1	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	6.00	6	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.....................................................................	23	1	6.00	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAAA.......................................................................	21	2	5.50	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	1	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGACC.......................................................................	21	1	5.00	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTAGACGTGTTTTGGTGT....................................................................................................................	25	1	5.00	5	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.....................................................................	22	1	5.00	5	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	1	5.00	5	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTCC...................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGAA......................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCG....................................................................	24	1	5.00	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1
......................................................................................................................................AAACCGTCCAAAACTGAG........................................................................	18	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGCT......................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTAGACGTGTTTTG........................................................................................................................	21	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GTCTCAAATGT--GCAAATCGTAATAATA---GTTACATAA-CACGAAAAAG----------TAAAGAATACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT-T-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCAAATATCTTACAAATTAAATAAA-------------------AATGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	506.00	506	281	225
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	261.00	261	135	126
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	28.00	28	28	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	13.00	13	9	4
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	10.00	10	10	0
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	8.00	8	7	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	4.00	4	3	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	2.00	2	2	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	1.00	1	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	1.00	1	1	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	1.00	1	1	0
....................................................................................TTAGTTTTAGACGTGTTTTGGT......................................................................................................................	22	1	1.00	1	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGATG....................................................................	24	1	1.00	1	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	1.00	1	0	1

droWil2

GTCCCCAATTTTTG------------TATGTGTTTT-CTACGCATA------AATCTCTCGCATCAT-ATATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCAT--------------------GAAAACAAAAGAAGAGACCAAA---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	236519.00	236519	209115	955	1255	856	24338
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	54238.00	54238	23886	956	1656	121	27619
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	8157.00	8157	7961	30	12	1	153
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	3320.00	3320	3257	7	3	3	50
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	2989.00	2989	2296	64	72	3	554
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	2269.00	2269	2195	9	1	1	63
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	961.00	961	943	3	3	1	11
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	828.00	828	828	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	563.00	563	339	25	14	1	184
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	552.00	552	452	71	1	1	27
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	467.00	467	107	6	7	1	346
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	337.00	337	331	2	1	0	3
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	1	275.00	275	274	0	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	270.00	270	185	3	8	3	71
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	233.00	233	227	0	0	0	6
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	176.00	176	151	3	0	0	22
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	149.00	149	141	4	0	0	4
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	141.00	141	32	69	3	0	37
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	110.00	110	25	0	0	0	85
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	71.00	71	5	0	1	10	55
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	1	64.00	64	64	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	48.00	48	44	2	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	46.00	46	23	0	1	0	22
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	45.00	45	18	0	1	0	26
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	43.00	43	24	0	0	0	19
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC....................................................................	24	1	35.00	35	35	0	0	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	23.00	23	20	3	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	17.00	17	14	0	0	0	3
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	17.00	17	13	4	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTA..........................................................................	18	1	14.00	14	14	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCG....................................................................	24	1	13.00	13	13	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	13.00	13	11	0	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG....................................................................	24	1	12.00	12	12	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC....................................................................	24	1	12.00	12	11	1	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	12.00	12	6	6	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.....................................................................	22	1	10.00	10	10	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAA........................................................................	20	1	9.00	9	5	0	0	0	4
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	8.00	8	2	5	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	1	8.00	8	8	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	8.00	8	3	0	0	0	5
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	7.00	7	3	1	1	0	2
........................................................................................................................................ACCGTCCAAAACTGAGGC......................................................................	18	1	7.00	7	7	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGGC........................................................................	20	1	6.00	6	0	0	0	0	6
....................................................................................................................................TGAAACCGTCCAAAACTGC.........................................................................	19	1	5.00	5	4	0	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGTT......................................................................	22	1	5.00	5	3	0	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	4.00	4	2	1	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGAA......................................................................	22	1	4.00	4	1	0	0	0	3
...................................................................................................................................TTGAAACCGTCCAAAACTGAGG.......................................................................	22	1	4.00	4	3	1	0	0	0
....................................................................................TTAGTTTTCGACGTGTTTTGGT......................................................................................................................	22	1	4.00	4	0	0	0	0	4
....................................................................................................................................TGAAACCGTCCAAAACTGAT........................................................................	20	1	3.00	3	0	0	1	0	2
......................................................................................................................................AAACCGTCCAAAACTGAG........................................................................	18	1	3.00	3	2	1	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.....................................................................	23	1	3.00	3	0	0	0	0	3
...............................................................TCAT-ATATCCGCAATGGAC.............................................................................................................................................	19	1	3.00	3	3	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC....................................................................	24	1	2.00	2	2	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGCT.....................................................................	21	1	2.00	2	2	0	0	0	0
..............................................................ATCAT-ATATCCGCAATGGAC.............................................................................................................................................	20	1	2.00	2	2	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGCC.....................................................................	20	1	2.00	2	2	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAAT.......................................................................	21	1	2.00	2	0	0	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAAA.......................................................................	21	1	2.00	2	2	0	0	0	0

dp5

---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAA-----------------CCAAAAA--A------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	35574.00	35574	175	3540	345	19166	96	7655	883	187	43	3484
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	32520.00	32520	29	6290	31	17179	11	7277	1268	36	13	386
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	1718.00	1718	3	635	1	510	0	488	74	0	0	7
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	534.00	534	0	486	1	32	0	13	1	1	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	482.00	482	10	107	1	300	0	55	7	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	428.00	428	2	126	0	151	3	123	7	5	0	11
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	392.00	392	2	286	2	60	0	11	1	2	1	27
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	252.00	252	1	19	5	195	0	29	1	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	235.00	235	1	29	2	141	0	51	7	2	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	129.00	129	0	25	1	69	0	31	2	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	119.00	119	4	53	0	35	0	25	1	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	111.00	111	9	33	0	43	0	24	1	1	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	94.00	94	0	0	1	76	0	14	3	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	58.00	58	0	58	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	45.00	45	0	19	0	14	0	6	0	0	0	6
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	36.00	36	0	28	0	2	0	5	0	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	35.00	35	0	6	0	22	0	7	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	30.00	30	0	1	0	21	0	7	1	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	26.00	26	0	1	2	5	6	10	1	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	23.00	23	0	7	0	9	0	7	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	1	19.00	19	0	0	0	19	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	14.00	14	0	11	0	3	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	12.00	12	0	2	0	6	0	4	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	11.00	11	0	10	0	1	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	11.00	11	0	11	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.....................................................................	22	1	7.00	7	0	1	0	5	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	7.00	7	0	3	0	3	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	1	6.00	6	1	0	0	5	0	0	0	0	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGG.......................................................................	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	1	6.00	6	0	5	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	5.00	5	0	1	0	1	0	2	0	0	0	1
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCTT....................................................................	23	1	5.00	5	0	4	0	0	0	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	4.00	4	0	1	0	1	0	2	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC....................................................................	24	1	4.00	4	0	0	0	3	0	1	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGC......................................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	3.00	3	0	1	0	1	0	1	0	0	0	0
........................................................................................................................................ACCGTCCAAAACTGAGGC......................................................................	18	1	3.00	3	0	2	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	3.00	3	0	1	0	2	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	1	3.00	3	0	0	0	2	0	1	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	3.00	3	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGA.........................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC....................................................................	24	1	3.00	3	0	2	0	1	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAG........................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	1	2.00	2	0	0	0	2	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGTT.....................................................................................................................	24	1	2.00	2	0	0	0	0	1	1	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGTGT....................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0

droPer2

AT---------------------------------------------------------------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAA-----------------CCAAAAA--A------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	21405.00	21405	819	450	47	6611	10408	3070
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	19541.00	19541	29	665	12	5873	9008	3954
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	1009.00	1009	1	44	1	309	514	140
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	398.00	398	0	13	0	136	223	26
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	261.00	261	10	10	0	57	151	33
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	161.00	161	1	3	0	38	92	27
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	101.00	101	7	4	0	26	46	18
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	86.00	86	1	3	0	35	35	12
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	68.00	68	14	4	0	11	38	1
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	67.00	67	4	40	0	10	9	4
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	61.00	61	0	42	0	10	6	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	56.00	56	2	1	0	20	26	7
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	40.00	40	1	1	0	10	24	4
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	35.00	35	0	0	0	8	21	6
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	26.00	26	0	1	0	9	6	10
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	23.00	23	0	1	0	7	12	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	16.00	16	0	1	0	4	10	1
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	12.00	12	0	2	0	3	7	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	8.00	8	0	0	0	1	7	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	8.00	8	0	4	0	1	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	6.00	6	0	0	0	0	6	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	6.00	6	2	2	0	1	1	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	6.00	6	0	0	0	4	2	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG....................................................................	24	1	5.00	5	0	0	0	1	4	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	4.00	4	0	0	0	0	4	0
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	4.00	4	0	0	0	0	4	0
....................................................................................................................................TGAAACCGTCCAAAACTGACC.......................................................................	21	1	4.00	4	0	0	0	0	4	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	3.00	3	0	2	0	0	1	0
......................................................................................................................................AAACCGTCCAAAACTGAG........................................................................	18	1	3.00	3	0	3	0	0	0	0

droAna3

AT---------------------------------------------------------------ATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAA-----------------------A--A------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	35131.00	35131	1576	263	33	5855	2853	24551
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	29697.00	29697	1230	960	81	6643	1905	18878
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	1437.00	1437	139	4	0	441	207	646
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	634.00	634	6	3	1	39	15	570
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	483.00	483	66	57	2	147	24	187
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	374.00	374	55	11	0	111	36	161
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	297.00	297	0	0	0	16	31	250
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	228.00	228	9	5	1	69	33	111
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	226.00	226	1	1	0	9	31	184
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	168.00	168	11	0	0	49	2	106
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	158.00	158	118	0	0	5	3	32
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	132.00	132	93	0	0	14	3	22
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	107.00	107	2	1	0	20	5	79
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	92.00	92	1	2	0	6	5	78
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	91.00	91	0	1	0	28	6	56
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	35.00	35	1	0	0	5	1	28
....................................................................................................................................TGAAACCGTCCAAAACTGAT........................................................................	20	1	24.00	24	0	0	0	0	2	22
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	15.00	15	4	0	0	1	2	8
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	15.00	15	0	2	0	5	2	6
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	14.00	14	8	1	0	3	0	2
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	13.00	13	9	0	0	0	0	4
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	11.00	11	4	0	0	1	0	6
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	9.00	9	2	1	0	3	2	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	8.00	8	1	1	0	0	1	5
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	7.00	7	0	0	0	2	1	4
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	7.00	7	0	0	0	3	0	4
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	6.00	6	0	1	0	5	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	5.00	5	5	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	1	5.00	5	1	0	0	0	2	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCATT...................................................................	25	1	4.00	4	0	0	0	1	0	3
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	3.00	3	0	0	0	0	0	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGAA......................................................................	22	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG....................................................................	24	1	3.00	3	0	0	0	3	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	1	3.00	3	1	0	0	2	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.....................................................................	23	1	3.00	3	1	0	1	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGAT......................................................................	22	1	3.00	3	0	0	0	0	2	1
...................................................................................................................................TTGAAACCGTCCAAAACTGAGG.......................................................................	22	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGGC........................................................................	20	1	3.00	3	0	0	0	0	0	3
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................CAACTGT-GAGGCGTGAGCATCTA..............................................	23	1	2.00	2	0	0	0	0	0	2

droBip1

---------------------------------------------------------------------TGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCTCCA---------------------------------TA-C-------------------AGAGTGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

----------------------------------------------------------------------GCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AGCG-A-TATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTAA-----------------CCAAAA--CAG-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------TGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------------------------------------------------------TGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAA-----------------CCAAAAA--AC-----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A--------------------------------------------------------------------TGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-G-AATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

---------------------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATC------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	182213.00	182213	0	0	0	0	57	3	0	0	0	0	2	0	0	0	103	3	1	28	3	0	0	0	2	0	0	35	4	4	42	41	1904	1380	12	9	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	94	5	0	0	1	0	0	0	1	1	5	160	3	5	764	40	134	0	0	5	6	1157	9	0	0	12	0	6	4	11	4	4	0	1	32	94	1447	1466	18	919	5	1343	769	2862	68	824	123	806	1025	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	1	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	2476	3186	0	1803	9	5	1735	2196	58	2600	55	2713	28	3435	386	22	0	14	0	0	3824	0	1	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	33	11	4	11	2	0	5	0	14	5	0	0	4	30	10	0	0	9	7	0	238	5956	135	1	1	5	1954	5386	3	894	0	0	0	0	2	2843	0	0	0	0	0	2	0	0	8	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	30	15364	13339	13647	16002	4	23	1581	744	2	165	2	1	2	11	3927	1	2523	3604	0	0	0	3	14	4	13	11	3	0	2	0	1	0	1	0	1081	43841	1901	552	1333	1181	1139	8	0	132	1	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	129008.00	129008	0	0	0	0	64	1	0	0	0	1	0	5	0	0	190	5	0	46	5	0	0	0	3	0	0	22	2	3	37	60	2197	1791	9	8	0	16	1	0	0	1	0	0	8	0	1	9	1	0	0	1	2	0	4	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	114	8	0	0	0	0	0	0	5	14	22	211	12	32	294	34	175	1	5	73	48	2274	8	0	0	1	0	2	6	13	25	5	1	1	35	121	1322	1921	14	762	3	1601	1420	6263	110	788	120	740	795	0	0	0	0	0	0	0	0	0	0	16	0	1	0	0	0	0	0	4	0	11	0	0	4	0	0	0	0	1	0	0	0	0	0	3	0	2072	2565	0	1896	14	4	2399	1995	64	2374	39	1875	35	3182	468	14	0	4	0	0	5149	1	0	4	1	0	0	0	2	0	1	0	0	1	0	0	0	4	0	0	0	3	0	0	0	0	0	0	3	14	14	54	113	43	60	7	10	33	6	104	16	0	0	18	17	13	0	0	98	124	0	436	3840	82	5	2	13	2552	3595	4	900	0	0	0	0	2	3082	1	0	0	0	0	2	0	0	27	2	3	1	3	1	0	1	7	0	1	1	0	0	2	0	0	2	1	12	8245	8832	7220	7907	7	349	2344	1050	1	48	1	2	3	8	3966	1	2038	3948	1	1	0	1	15	10	5	46	3	0	1	4	2	3	0	0	509	15558	940	338	969	587	461	12	0	135	2	2	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCATC...................................................................	25	1	53707.00	53707	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35998	17709	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGATC....................................................................	24	1	18047.00	18047	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13237	4810	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	12436.00	12436	0	0	0	0	2	1	0	0	0	0	0	0	1	0	8	0	0	4	2	0	0	0	0	0	0	1	0	1	5	3	216	151	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	20	0	0	37	4	4	0	0	1	2	151	1	0	0	0	0	1	0	1	0	0	0	0	2	10	153	156	1	106	4	142	41	102	3	63	8	82	105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	237	377	0	156	0	1	164	168	3	226	6	309	3	338	20	0	0	0	0	0	392	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	13	220	7	0	0	1	46	569	0	40	0	0	0	0	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	676	540	815	1033	0	1	50	19	0	23	0	0	1	0	210	0	116	158	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	105	3439	81	23	37	39	43	1	0	3	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	3204.00	3204	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	3	0	0	0	0	0	0	0	0	0	16	0	1	30	1	8	0	0	0	1	83	1	0	0	1	0	0	0	2	0	0	1	0	1	2	61	15	1	8	0	18	4	41	0	39	5	43	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	124	139	0	126	1	1	110	96	2	99	2	84	1	186	7	0	0	0	0	0	265	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	71	39	0	0	0	0	0	5	53	2	0	0	0	31	31	0	9	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	189	217	170	197	0	0	41	19	0	0	0	0	0	0	88	0	41	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	188	14	3	8	7	3	0	0	2	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	1940.00	1940	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	44	44	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	3	51	77	0	30	0	57	56	226	3	37	9	30	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	131	144	0	86	0	2	93	54	1	48	0	98	1	257	9	0	0	0	0	0	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	3	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	7	8	0	1	2	2	0	0	0	0	0	0	5	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	1772.00	1772	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	7	0	5	0	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	1	49	5	0	3	0	15	1	17	0	18	1	24	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	65	75	0	37	0	0	46	39	0	77	1	58	0	104	1	0	0	0	0	0	152	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	9	5	0	0	0	0	0	8	53	0	0	0	1	11	35	0	3	0	0	0	0	0	16	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	81	69	78	96	0	1	11	9	0	3	0	1	0	0	47	0	20	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	262	5	2	5	4	5	0	0	1	0	0	0
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.....................................................................................................................................GAAACCGTCCAAAACTGAGGATC....................................................................	23	2	48.00	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	70	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	1	0	1	0	1	0	3	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGATT.......................................................................	21	1	43.00	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	6	0	9	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCTC...................................................................	25	1	41.00	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	33.00	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	3	2	0	2	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0

droSim2

---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	176950.00	176950	170635	3400	2093	169	7	190	7	12	198	110	0	120	0	1	0	2	6
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	30364.00	30364	28649	912	107	255	7	365	6	8	34	11	1	9	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	10399.00	10399	10084	268	33	12	0	0	0	0	0	1	0	0	0	1	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	6248.00	6248	5310	135	15	1	15	771	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	6132.00	6132	4485	120	16	21	29	1456	2	0	1	2	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	2383.00	2383	1780	44	7	1	8	543	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	1433.00	1433	1361	63	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	1407.00	1407	1051	30	4	0	2	320	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	672.00	672	632	20	3	9	0	0	0	0	2	2	0	1	0	3	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	495.00	495	471	6	7	10	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	2	380.00	760	735	21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	268.00	268	253	13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	266.00	266	257	5	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	223.00	223	203	11	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	159.00	159	148	4	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	113.00	113	108	2	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	2	96.50	193	187	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	89.00	89	62	1	0	25	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	66.00	66	59	1	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	60.00	60	58	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	59.00	59	57	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	59.00	59	57	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	39.00	39	38	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAA........................................................................	20	1	38.00	38	37	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	37.00	37	36	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	26.00	26	21	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	23.00	23	22	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	23.00	23	8	0	0	1	0	14	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGA.........................................................................	18	1	20.00	20	8	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.....................................................................	22	1	15.00	15	4	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	14.00	14	3	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC....................................................................	24	1	13.00	13	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC....................................................................	24	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACCGTCCAAAACTGAGGC......................................................................	18	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	3	8.00	24	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG....................................................................	24	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC....................................................................	24	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAT........................................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTA..........................................................................	18	2	6.00	12	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGCT.....................................................................	21	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	4.00	4	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGCT.....................................................................	20	1	3.00	3	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	3.00	3	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CCGTCCAAAACTGAGGCT.....................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.....................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAG........................................................................	18	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGAG......................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGT......................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGAA......................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTT..........................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCTT....................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAAA.......................................................................	21	7	1.29	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACCGTCCAAAACTGAGGCT.....................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	33768.00	33768	1074	3310	94	29290
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	28451.00	28451	752	2496	799	24404
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	1556.00	1556	101	201	2	1252
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	388.00	388	6	22	2	358
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	355.00	355	25	41	0	289
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	281.00	281	18	23	0	240
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	160.00	160	6	2	0	152
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	105.00	105	1	16	0	88
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	103.00	103	68	5	0	30
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	87.00	87	3	4	0	80
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	65.00	65	55	1	1	8
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	57.00	57	1	11	18	27
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	52.00	52	5	4	0	43
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	44.00	44	3	1	1	39
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	39.00	39	12	3	0	24
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	33.00	33	1	6	0	26
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	28.00	28	8	1	0	19
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	1	23.00	23	1	6	2	14
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	18.00	18	3	0	0	15
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	15.00	15	1	0	0	14
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	12.00	12	0	0	0	12
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	10.00	10	0	1	0	9
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	7.00	7	6	0	0	1
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	6.00	6	4	1	0	1
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	5.00	5	4	0	0	1
....................................................................................TTAGTTTTCGACGTGTTTTGGT......................................................................................................................	22	1	4.00	4	0	0	0	4
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	4.00	4	0	0	0	4
....................................................................................................................................TGAAACCGTCCAAAACTGAA........................................................................	20	1	3.00	3	0	1	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	3.00	3	0	0	0	3
....................................................................................................................................TGAAACCGTCCAAAACTGAGCA......................................................................	22	1	2.00	2	1	0	0	1
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	2.00	2	0	2	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	1	2.00	2	2	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	2.00	2	0	0	0	2
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	1	2.00	2	0	1	0	1
...................................................................................CTTAGTTTTCGACGTGTTTTG........................................................................................................................	21	1	2.00	2	1	1	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	1.00	1	1	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGGT.....................................................................	23	1	1.00	1	0	0	0	1
........................................................................................................................................ACCGTCCAAAACTGAGGC......................................................................	18	1	1.00	1	1	0	0	0

droYak3

---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-A-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	2	49250.50	98501	81795	962	993	41	3337	10461	906	2	0	4	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	2	11481.50	22963	9843	1012	25	2	2611	8336	1134	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	2	2394.00	4788	4466	32	3	0	58	217	12	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	2	938.50	1877	1184	58	0	0	124	451	60	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	2	593.00	1186	1124	9	0	0	16	37	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	2	492.00	984	947	2	2	0	11	21	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	2	304.00	608	233	22	0	0	78	260	15	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	2	268.00	536	508	2	0	0	6	20	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	2	192.00	384	383	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	2	137.00	274	189	76	1	0	5	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	2	94.00	188	188	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	2	68.50	137	57	3	1	0	17	54	5	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	2	67.00	134	120	0	1	0	5	8	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	2	63.50	127	119	3	0	0	3	2	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	2	63.00	126	45	6	5	0	15	54	1	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	2	45.00	90	80	8	0	0	1	1	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	2	42.50	85	12	66	0	0	1	5	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAC........................................................................	20	2	25.50	51	50	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	2	22.00	44	4	0	0	0	3	37	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	2	18.00	36	13	0	0	0	1	22	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	2	18.00	36	9	2	0	0	5	19	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	2	14.00	28	25	0	0	0	0	3	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	2	13.00	26	4	2	3	2	7	7	1	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	2	11.00	22	22	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC....................................................................	24	2	9.50	19	17	1	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	2	8.00	16	14	0	0	0	0	2	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	2	6.00	12	4	2	0	0	1	3	2	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	2	5.50	11	3	5	0	0	0	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAA........................................................................	20	2	5.50	11	11	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	2	4.50	9	8	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT...................................................................	25	2	4.00	8	5	0	0	0	1	2	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC....................................................................	24	2	3.50	7	6	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................TTGAAACCGTCCAAAACTGAGGC......................................................................	23	2	3.50	7	6	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG....................................................................	24	2	3.00	6	5	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGC.........................................................................	19	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	2	2.50	5	1	0	0	0	0	3	1	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGATT.......................................................................	21	2	2.50	5	0	0	0	0	0	5	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	2	2.50	5	2	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	2	2.50	5	4	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................AAACCGTCCAAAACTGAGGCT.....................................................................	21	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.....................................................................	22	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGT.........................................................................	19	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAT........................................................................	20	2	2.00	4	0	0	0	0	1	3	0	0	0	0	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.....................................................................	23	2	2.00	4	0	0	0	0	1	2	1	0	0	0	0

droEre2

---------------------------------------------------------------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-C-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................TGAAACCGTCCAAAACTGAGGC......................................................................	22	1	61985.00	61985	2116	341	6010	97	3947	49474	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGG.......................................................................	21	1	59281.00	59281	2294	13	5443	7	4009	47515	0
....................................................................................................................................TGAAACCGTCCAAAACTGAG........................................................................	20	1	2015.00	2015	147	0	188	0	158	1522	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.....................................................................	23	1	1063.00	1063	92	1	170	0	75	725	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGA......................................................................	22	1	651.00	651	6	0	39	0	13	593	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.....................................................................	23	1	408.00	408	46	0	44	0	34	284	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGC......................................................................	21	1	282.00	282	154	2	8	0	4	114	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGG.......................................................................	20	1	255.00	255	161	0	7	0	5	82	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGT.......................................................................	21	1	217.00	217	19	0	12	0	3	183	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGT......................................................................................................................	23	1	195.00	195	1	3	10	3	13	165	0
....................................................................................................................................TGAAACCGTCCAAAACTGA.........................................................................	19	1	140.00	140	6	0	8	0	3	123	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.....................................................................	23	1	136.00	136	4	4	13	0	8	107	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGT......................................................................	22	1	115.00	115	6	0	24	0	2	83	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGA.......................................................................	21	1	73.00	73	5	0	10	0	3	55	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGC.......................................................................	21	1	58.00	58	4	0	6	0	4	44	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.....................................................................	23	1	55.00	55	2	0	5	0	6	42	0
...................................................................................CTTAGTTTTCGACGTGTTTTGG.......................................................................................................................	22	1	46.00	46	5	0	1	0	13	27	0
......................................................................................................................................AAACCGTCCAAAACTGAGG.......................................................................	19	1	37.00	37	11	0	2	0	2	22	0
......................................................................................................................................AAACCGTCCAAAACTGAGGC......................................................................	20	1	30.00	30	11	0	4	0	0	15	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT....................................................................	24	1	25.00	25	1	0	0	0	1	23	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGG......................................................................	22	1	15.00	15	2	0	2	0	1	10	0
.....................................................................................................................................GAAACCGTCCAAAACTGAG........................................................................	19	1	14.00	14	9	0	1	0	1	3	0
.......................................................................................................................................AACCGTCCAAAACTGAGG.......................................................................	18	1	12.00	12	1	0	0	0	0	11	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT....................................................................	24	1	11.00	11	0	0	3	0	1	7	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.....................................................................	22	1	10.00	10	5	0	0	0	0	5	0
....................................................................................................................................TGAAACCGTCCAAAACTGAT........................................................................	20	1	9.00	9	1	0	0	0	0	8	0
.......................................................................................................................................AACCGTCCAAAACTGAGGC......................................................................	19	1	8.00	8	2	0	0	0	0	6	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.....................................................................	23	1	7.00	7	0	0	3	0	0	4	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.....................................................................	23	1	6.00	6	0	0	2	0	0	4	0
.....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.....................................................................	22	1	5.00	5	4	0	0	0	0	1	0
........................................................................................................................................ACCGTCCAAAACTGAGGC......................................................................	18	1	5.00	5	1	0	0	0	0	4	0
....................................................................................................................................TGAAACCGTCCAAAACTGATT.......................................................................	21	1	5.00	5	0	0	3	0	0	2	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGTA.....................................................................................................................	24	1	4.00	4	0	0	1	0	0	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT....................................................................	24	1	4.00	4	0	0	0	0	1	3	0
....................................................................................................................................TGAAACCGTCCAAAACTG..........................................................................	18	1	4.00	4	1	0	0	0	0	3	0
...................................................................................CTTAGTTTTCGACGTGTTTTGGC......................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGTA......................................................................	22	1	3.00	3	0	0	0	0	0	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA....................................................................	24	1	3.00	3	0	0	0	0	0	3	0
...................................................................................CTTAGTTTTCGACGTGTTTTG........................................................................................................................	21	1	3.00	3	1	0	2	0	0	0	0
....................................................................................TTAGTTTTCGACGTGTTTTGGT......................................................................................................................	22	1	3.00	3	0	0	0	0	0	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGG.........................................................................	19	1	3.00	3	0	0	0	0	0	3	0
....................................................................................................................................TGAAACCGTCCAAAACTGGC........................................................................	20	4	2.25	9	0	0	0	0	0	9	0

dmo_6

scaffold_6680:22273703-22273771 +

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-40.1	-40.0	-40.0