ID:

dmo_597

 Coordinate:

scaffold_6378:36571-36625 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.1

Flybase annnotation

exon [dmoj_GLEANR_11171:1]; CDS [Dmoj\GI11234-cds]; CDS [Dmoj\GI11234-cds]; exon [dmoj_GLEANR_11171:2]; intron [Dmoj\GI11234-in]

No Repeatable elements found

mature
  1. scaffold_1990:2740-2764 -
  2. scaffold_1990:2961-2985 -
  3. scaffold_2108:1674-1698 +
  4. scaffold_4485:47147-47171 +
  5. dmo_389  scaffold_5889:6604-6628 +
  6. dmo_597  scaffold_6378:36601-36625 +
  7. scaffold_6378:36822-36846 +
  8. scaffold_6473:16265567-16265591 -
  9. scaffold_6498:2185405-2185429 +
  10. scaffold_6498:2185847-2185871 +
  11. scaffold_6541:2543070-2543094 +
star

Sense Strand Reads

--------##########################################-------------------------------------------------------##################################################
TCTAGTATATGACGCTCAGAGCCGGGTTGGGCAACTCTCGCCAGGCTACGGTGAGATTTGGGTGCCCGCGGCTTCTCACGTCAGACTCCGGCATATAACGCTCAGAGTCTTTGGCGCGATTCCGCTGCACCGAGCCCCGAGGTGGCAACACCCAC
**************************************************.((((..(((.(((((...((..(((......)))..))))))).)))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
................................................................................TCAGACTCCGGCATATAACGCTCAGA................................................. 26 0 11 4.91 54 35 12 3 4
................................................................................TCAGACTCCGGCATATAACGCTCAGAG................................................ 27 0 11 4.36 48 45 2 1 0
................................................................................TCAGACTCCGGCATATAACGCTCAG.................................................. 25 0 11 1.36 15 13 0 2 0
.....TATATGACGCTCAGAGCCGGGTTGG............................................................................................................................. 25 0 1 1.00 1 0 0 1 0
.....TATATGACGCTCAGAGCCGGGTTGGG............................................................................................................................ 26 0 1 1.00 1 0 0 1 0
...........................................................................TCACGTCAGACTCCGGCATATAACGC...................................................... 26 0 20 1.00 20 9 11 0 0
................................................................................TCAGACTCCGGCATATAACGCTCAGAGTC.............................................. 29 0 10 1.00 10 1 9 0 0
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGGCAAC...... 29 0 6 1.00 6 0 6 0 0
................................................................................TCAGACTCCGGCATATAACGCTCAGAGT............................................... 28 0 10 0.80 8 7 1 0 0
.........................................................................TCTCACGTCAGACTCCGGCATATAACGC...................................................... 28 0 20 0.75 15 8 7 0 0
...........................................................................TCACGTCAGACTCCGGCATATAACGCT..................................................... 27 0 16 0.63 10 7 2 0 1
.........................................................................................................................TCGCTGCACCGAGCCCCGAGGTGGCAAC...... 28 1 7 0.57 4 1 3 0 0
.............................................................................................TATAACGCTCAGAGTCTTTGGCGC...................................... 24 0 2 0.50 1 1 0 0 0
..............................................................................................ATAACGCTCAGAGTCTTTGGCGCGA.................................... 25 0 2 0.50 1 1 0 0 0
.............................................................................................TATAACGCTCAGAGTCTTTGG......................................... 21 0 2 0.50 1 1 0 0 0
..............................................................................................ATAACGCTCAGAGTCTTTGGCG....................................... 22 0 2 0.50 1 0 1 0 0
..............................................................................................ATAACGCTCAGAGTCTTTGGCGCG..................................... 24 0 2 0.50 1 1 0 0 0
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGGCA........ 27 0 6 0.50 3 3 0 0 0
..........GGCGCTCAGAGCCGGGACGG............................................................................................................................. 20 3 6 0.50 3 3 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAA......................................................... 26 0 20 0.45 9 9 0 0 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGT............ 24 0 5 0.40 2 2 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAACGC...................................................... 29 0 20 0.40 8 4 4 0 0
.................................................................................CAGACTCCGGCATATAACGCTCAGAG................................................ 26 0 11 0.36 4 4 0 0 0
.........................................................................TCTCACGTCAGACTCCGGCATATAA......................................................... 25 0 20 0.35 7 6 1 0 0
..............................................................................................ATAACGCTCAGAGTCTTTGGCGACT.................................... 25 3 3 0.33 1 0 1 0 0
.......TATGACGCTCAGAGCCGGGTTGG............................................................................................................................. 23 0 3 0.33 1 0 0 1 0
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGG.......... 25 0 6 0.33 2 2 0 0 0
.........................................................................................................................TCGCTGCACCGAGCCCCGAGGTGGC......... 25 1 7 0.29 2 1 1 0 0
.....................................TCGCCAGGCTACGGTGAGATTTGGG............................................................................................. 25 0 7 0.29 2 2 0 0 0
.........................................................................TCTCACGTCAGACTCCGGCATATAACGCT..................................................... 29 0 16 0.25 4 3 1 0 0
.........TGGCGCTCAGAGCCGGGACGG............................................................................................................................. 21 3 4 0.25 1 1 0 0 0
...........................................................................TCACGTCAGACTCCGGCATATAACGCTC.................................................... 28 0 16 0.25 4 4 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATAT........................................................... 24 0 20 0.20 4 4 0 0 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGCAA....... 29 0 5 0.20 1 1 0 0 0
.........................................................................TCTCACGTCAGACTCCGGCATATA.......................................................... 24 0 20 0.20 4 3 1 0 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTG........... 25 0 5 0.20 1 1 0 0 0
..............................................TACGGTGAGATTTGGGTGCCCGCGA.................................................................................... 25 1 5 0.20 1 0 0 1 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGG............. 23 0 5 0.20 1 0 1 0 0
.......................................................................................................................TTCCGCTGCAACGAGCCCCGAGGTGGC......... 27 1 5 0.20 1 0 1 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATA.......................................................... 25 0 20 0.20 4 2 2 0 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGCA........ 28 0 5 0.20 1 1 0 0 0
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGC......... 27 0 5 0.20 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACGCT..................................................... 22 0 16 0.19 3 0 2 1 0
........................................................................................................................TTCTCTGCACCGAGCCCCGAGGTGGC......... 26 2 6 0.17 1 0 1 0 0
........................................................................................................................TTCGCTGCACCGAGCCCCGAGGTGGCAAA...... 29 2 6 0.17 1 0 1 0 0
........................................................................................................................TTCGCTGCACCGAGCCCCGAGGTG........... 24 1 6 0.17 1 1 0 0 0
........................................................................................................................TTAGCTGCACCGAGCCCCGAGGTGGCAAC...... 29 2 6 0.17 1 0 1 0 0
........................................................................................................................TTCGCTGCACCGAGCCCCGAGGTGGCAAC...... 29 1 6 0.17 1 0 1 0 0
........................................................................................................................TCCGCTGCACCGAGCCCCGAGG............. 22 0 6 0.17 1 0 1 0 0
........................................................................................................................TGCGCTGCACCGAGCCCCGAGGTGGCAAC...... 29 1 6 0.17 1 0 1 0 0
.....................................TCGCCAGGCTACGGTGAGATTTGGGTGC.......................................................................................... 28 0 7 0.14 1 1 0 0 0
..............................................TACGGTGAGATTTGGGTG........................................................................................... 18 0 7 0.14 1 1 0 0 0
.........................................................................................................................TCGCTGCACCGAGCCCCGAGGTGGCA........ 26 1 7 0.14 1 1 0 0 0
..............................................TACGGTGAGATTTGGGTC........................................................................................... 18 1 7 0.14 1 1 0 0 0
............................................................................................................................CTGCACCGAGCCCCGAGGTGGCAAC...... 25 0 7 0.14 1 1 0 0 0
.........................................................................................................................TGGCTGCACCGAGCCCCGAGGTGGCAAC...... 28 2 7 0.14 1 0 1 0 0
.........................................................................................................................TCGCTGCACCGAGCCCCGAGGTGGCAA....... 27 1 7 0.14 1 1 0 0 0
.............................................................................................................................TGCACCGAGCCCCGAGGTGGCAACACA... 27 1 7 0.14 1 1 0 0 0
..........................................................................................................................CGCTGCACCGAGCCCCGAGGTGGC......... 24 0 7 0.14 1 1 0 0 0
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTG........... 23 0 7 0.14 1 1 0 0 0
......................................CGCCAGGCTACGGTGAGATTTGGG............................................................................................. 24 0 7 0.14 1 1 0 0 0
..............................................................................................ATAACGCTCAGAGCCTTTGGCGCGATT.................................. 27 1 7 0.14 1 1 0 0 0
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTGGCAT....... 27 1 7 0.14 1 0 1 0 0
.....................................TCGCCAGGCTACGGTGAGATTTGGGTC........................................................................................... 27 1 7 0.14 1 1 0 0 0
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTGGC......... 25 0 7 0.14 1 0 1 0 0
...................................................................................................................GCGATTCCGCTGCACCGACCCCCGA............... 25 1 7 0.14 1 0 0 0 1
.............................................................................................................TTAGGCGCGATTCCGCTGCACCGAGC.................... 26 1 8 0.13 1 0 1 0 0
..........................................................................CTCACGTCAGACTCCGGCATATAACGCT..................................................... 28 0 16 0.13 2 2 0 0 0
................................................................................TCAGACTCCGGCATATAACGCTC.................................................... 23 0 16 0.13 2 0 2 0 0
....................................CTCGCCAGGCTACAGTGAGATTTGGG............................................................................................. 26 1 8 0.13 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATC............................................................ 23 1 20 0.10 2 1 1 0 0
................................................................................TCAGACCCCGGCATATAACGCTCAGAGTC.............................................. 29 1 10 0.10 1 0 1 0 0
................................................................................TGAGACTCCGGCATATAACGCTCAGAGTC.............................................. 29 1 10 0.10 1 0 1 0 0
......................................................................................TCCGGCATATAACGCTCAGAGTCT............................................. 24 0 10 0.10 1 1 0 0 0
............................................................................CACGTCAGACTCCGGCATATAACGC...................................................... 25 0 20 0.10 2 2 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAAC........................................................ 27 0 20 0.10 2 1 1 0 0
....................................................................................ACTCCGGCATATAACGCTCAGAGT............................................... 24 0 10 0.10 1 1 0 0 0
.....................................................................................CTCCGGCATATAACGCTCAGAGTCT............................................. 25 0 10 0.10 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACGC...................................................... 21 0 20 0.10 2 0 1 1 0
..........................................................................CTCACGTCAGACTCCGGCATATAACG....................................................... 26 0 20 0.10 2 2 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATA............................................................ 23 0 20 0.10 2 1 1 0 0
.................................................................................CAGACTCCGGCATATAACGCTCAGAGTC.............................................. 28 0 10 0.10 1 0 1 0 0
........................................................................TTCTCACGTCAGACTCCGGC............................................................... 20 0 20 0.10 2 2 0 0 0
.........................................................................TCTCACGTCAGACTCCGGCA.............................................................. 20 0 20 0.10 2 2 0 0 0
.................................................................................CAGACTCCGGCATATAACGCTCAG.................................................. 24 0 11 0.09 1 1 0 0 0
...............................................................................GTCAGACTCCGGCATATAACGCTCAG.................................................. 26 0 11 0.09 1 1 0 0 0
................................................................................TCAGACTCCGGCCTATAACGCTCAGAGTC.............................................. 29 1 11 0.09 1 0 1 0 0
.................................................................................CAGACTCCGGCATATAACGCTCAGA................................................. 25 0 11 0.09 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACGCTCA................................................... 24 0 11 0.09 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACACTCAGAG................................................ 27 1 11 0.09 1 0 1 0 0
................................................................................TCAGACTCCGGCATATAACGCTCAGCC................................................ 27 2 11 0.09 1 1 0 0 0
..................................................................................AGACTCCGGCATATAACGCTCAGAG................................................ 25 0 11 0.09 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACGCTCAGAC................................................ 27 1 11 0.09 1 0 1 0 0
................................................................................TCAGACTCCGGGATATAACGCTCAGAG................................................ 27 1 11 0.09 1 1 0 0 0
..................................................................................AGACTCCGGCATATAACGCTCAGA................................................. 24 0 11 0.09 1 1 0 0 0
................................................................................TCAGACTCCGGCATATAACGCTCAGAA................................................ 27 1 11 0.09 1 0 0 0 1
................................................................................TCAGACTCCGGAATATAACGCTCAGAG................................................ 27 1 12 0.08 1 1 0 0 0
............CGCTCAGAGCCGGGACGGA............................................................................................................................ 19 3 13 0.08 1 0 0 1 0
..........................................................................CGCACGTCAGACTCCGGCATATAACGCTC.................................................... 29 1 16 0.06 1 0 1 0 0
..............................................................................CGTCAGACTCCGGCATATAACGCT..................................................... 24 0 16 0.06 1 0 0 0 1
............................................................................CACGTCAGACTCCGGCATATAACGCT..................................................... 26 0 16 0.06 1 0 0 1 0
...........GCGCTCAGAGCCGGGACGG............................................................................................................................. 19 3 17 0.06 1 0 0 1 0
.........................................................................TCTCACGTCAGACTCCGG................................................................ 18 0 20 0.05 1 1 0 0 0
.......................................................................ATTCTCACGTCAGACTCCGG................................................................ 20 1 20 0.05 1 1 0 0 0
.........................................................................TCTCACGTCAGACTCCGGCATA............................................................ 22 0 20 0.05 1 1 0 0 0
....................................................................CGGCTTCTCACGTCAGACTCC.................................................................. 21 0 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATCC........................................................... 24 2 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCGTATA.......................................................... 25 1 20 0.05 1 0 1 0 0
.........................................................................TCTCACGTCAGACTCCGGCAT............................................................. 21 0 20 0.05 1 1 0 0 0
..........................................................................CTCACCTCAGACTCCGGCATATAACGC...................................................... 27 1 20 0.05 1 0 1 0 0
..................ATACCGGGTTGGGCAACT....................................................................................................................... 18 3 20 0.05 1 1 0 0 0
...........................................................................TCACGTCAGACTCCGGCATC............................................................ 20 1 20 0.05 1 0 1 0 0
..........................................................................CTCACGTCAGACTCCGGCA.............................................................. 19 0 20 0.05 1 1 0 0 0
.........................................................................TCTCACTTCAGACTCCGGCATATAAC........................................................ 26 1 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAAAA....................................................... 28 2 20 0.05 1 1 0 0 0
..........................................................................CTCACGTCAGACTCCGGCAT............................................................. 20 0 20 0.05 1 1 0 0 0
.........................................................................TCTCACGTCAGACTCCGGC............................................................... 19 0 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATTC........................................................... 24 2 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAAA........................................................ 27 1 20 0.05 1 1 0 0 0
.......................................................................CTTTTCACGTCAGACTCCGGCAT............................................................. 23 1 20 0.05 1 0 1 0 0
...........................................................................TCACGTCAGACTCCGGCATATAACG....................................................... 25 0 20 0.05 1 0 0 1 0
.........................................................................TCTCACGTCAGACTCCGGCATATAACG....................................................... 27 0 20 0.05 1 1 0 0 0
...........................................................................TCACGTCAGACTCCGGCATACAACGC...................................................... 26 1 20 0.05 1 1 0 0 0
........................................................................TTCTCACGTCAGACTCCGGCATATAACG....................................................... 28 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

AGATCATATACTGCGAGTCTCGGCCCAACCCGTTGAGAGCGGTCCGATGCCACTCTAAACCCACGGGCGCCGAAGAGTGCAGTCTGAGGCCGTATATTGCGAGTCTCAGAAACCGCGCTAAGGCGACGTGGCTCGGGGCTCCACCGTTGTGGGTG
**************************************************.((((..(((.(((((...((..(((......)))..))))))).)))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V049
head
 V056
head
...............................................................................CAGACTGAGGGCCTATATT......................................................... 19 3 20 7.70 154 154 0 0 0 0
..............................................................................GCAGACTGAGGGCCTATATT......................................................... 20 3 20 4.20 84 0 81 0 2 1
.................................................................................................................CGCGCTAAGGCGACGTGGCTCGGGGCT............... 27 0 4 1.25 5 3 0 2 0 0
...................................................................CGCCGAAGAGTGCAGTCTGAGGC................................................................. 23 0 20 1.10 22 19 0 3 0 0
.................................................................................................................CGCGCTAAAGCGACGTGGCTCGGGGCT............... 27 1 4 0.75 3 1 0 2 0 0
...................................................................................................................CGCTAAGGCGACGTGGCTCGGGGCT............... 25 0 4 0.50 2 2 0 0 0 0
..............................................................................GCAGACTGAGGGCCTATAT.......................................................... 19 3 20 0.50 10 0 10 0 0 0
....................................................................GCCGAAGAGTGCAGTCTGAGGC................................................................. 22 0 20 0.45 9 8 0 1 0 0
.....................................................................CCGAAGAGTGCAGTCTGAGGC................................................................. 21 0 20 0.30 6 2 0 4 0 0
..................................................................GCGCCGAAGAGTGCAGTCTGAGGC................................................................. 24 0 20 0.30 6 6 0 0 0 0
.................................................................................GTCTGAGGCCGTATATTGCGAGT................................................... 23 0 11 0.27 3 3 0 0 0 0
..............................................................................GCAGTCTGAGGCCGTATATTGCGAGT................................................... 26 0 11 0.27 3 3 0 0 0 0
...............................................................................CAGTCTGAGGCCGTATATTGCGAGT................................................... 25 0 11 0.27 3 3 0 0 0 0
................................................................................................................CCGCGCTAAGGCGACGTGGCTCGGGGCT............... 28 0 4 0.25 1 0 0 1 0 0
.................................................................................................................CGCGCTAAAGCGACGTGGCTCGGTGCT............... 27 2 4 0.25 1 0 0 1 0 0
.................................................................................................................CTCGCTAAGGCGACGTGGCTCGGGGCT............... 27 1 4 0.25 1 1 0 0 0 0
..................................................................................TCTGAGGCCGTATATTGCGAGT................................................... 22 0 11 0.18 2 1 0 1 0 0
...............................................................................TAGTCTGAGGCCGTATATTGCGAGT................................................... 25 1 11 0.18 2 2 0 0 0 0
................................................................................AGTCTGAGGCCGTATATTGCGAGT................................................... 24 0 11 0.18 2 1 0 1 0 0
................................TTGAGAGCGGTCCGATGCCACTC.................................................................................................... 23 0 12 0.17 2 2 0 0 0 0
.............................................................................TGCAGTCTGAGGCCGTATATTGCGAG.................................................... 26 0 16 0.13 2 2 0 0 0 0
...............................................................................CAGTCTGAGGCCGTATATTGCGA..................................................... 23 0 16 0.13 2 2 0 0 0 0
...............................................................................................ATTGCGAGTCCTAGAAAACG........................................ 20 3 9 0.11 1 0 1 0 0 0
...............................................................................CAGACTGAGGGCCTATATTG........................................................ 20 3 20 0.10 2 2 0 0 0 0
..................................................................................................................GCGCTAAGGCGACGTGGCTCGGGG................. 24 0 10 0.10 1 1 0 0 0 0
....................................................................................................................GCTAAGGCGACGTGGCTCGGGG................. 22 0 10 0.10 1 1 0 0 0 0
........................................................................................GCGGTAGATTGCGAGTCTCA............................................... 20 2 10 0.10 1 0 1 0 0 0
......................................................................CGAAGAGTGCAGTCTGAGGC................................................................. 20 0 20 0.10 2 2 0 0 0 0
...................................................................CGCCGAAGAGTGCAGTCTGAGG.................................................................. 22 0 20 0.10 2 2 0 0 0 0
................................TTGAGAGCGGTCCGATGCCACTCT................................................................................................... 24 0 11 0.09 1 1 0 0 0 0
...............................GTTGAGAGCGGTCAGATGCCACTCT................................................................................................... 25 1 11 0.09 1 1 0 0 0 0
.................................TGAGAGCGGTCCGATGCCACTCT................................................................................................... 23 0 11 0.09 1 1 0 0 0 0
................................................................................ATTCTGAGGCCGTATATTGCGAGT................................................... 24 1 11 0.09 1 1 0 0 0 0
..........................................................................................CGTATATTGCGAGTCTCAGA............................................. 20 0 12 0.08 1 0 0 1 0 0
................................................................................AGTCTGAGGCCGGATATTGCGAGT................................................... 24 1 12 0.08 1 1 0 0 0 0
.............................................................CACGGGCGCCGAAGAGTGCAGTCT...................................................................... 24 0 13 0.08 1 0 1 0 0 0
............................................................................TTGCAGTCTGAGGCCGTATATTGCGAG.................................................... 27 1 17 0.06 1 0 1 0 0 0
................................................................................................TTGCGAGTCCTAGAAAACG........................................ 19 3 19 0.05 1 0 1 0 0 0
....................................................................GCCGAAAAGTGCAGTCTGAGGC................................................................. 22 1 20 0.05 1 1 0 0 0 0
..................................................................GCGCCGAAGAGTGCAGTCTGAGG.................................................................. 23 0 20 0.05 1 1 0 0 0 0
.....................................................................CCGAAGAGTGCAGTCTGAGTC................................................................. 21 1 20 0.05 1 0 0 1 0 0
...........................................................................AGTGCAGTCTGAGGCCGTATATTGC....................................................... 25 0 20 0.05 1 1 0 0 0 0
......................................................................CGAAGAGTGCAGTCTGAGGCC................................................................ 21 0 20 0.05 1 0 0 1 0 0
...............................................................................CAGGCTGAGGGCCTATAT.......................................................... 18 3 20 0.05 1 0 1 0 0 0
.........................................................................AGAGTGCAGTCTGAGGCCGTATATTGC....................................................... 27 0 20 0.05 1 1 0 0 0 0
................................................................TATCGCCGAAGAGTGCAGTCTGAGGC................................................................. 26 3 20 0.05 1 1 0 0 0 0
...................................................................CGCCGAAGAGTGCAGTCTGAGGCC................................................................ 24 0 20 0.05 1 1 0 0 0 0
...................................................................CGCCGAAGAATGCAGTCTGAGGC................................................................. 23 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6378:36521-36675 + dmo_597 TCTAGTATATGACGCTCAGAGCCGGGTTGGGCAACTCTCGCCAGGCTACGGTGAGATTTGGGTGCCCGCGGCTTCTCACGTCAGACTCCGGCATATAACGCTCAGAGTCTTTGGCGCGATTCCGCTGCACCGAGCCCCGAGGTGGCAACACCCAC
droVir3 scaffold_13049:6510439-6510486 - TC-----------------------------------------------------------------------------------------------------------TTCAGCTCCGCTCCGCTGCATCGAGACCTAAAGGAGCGGCTTCCAC
droPer2 scaffold_3237:429-458 - T-----------------------------------------------------------------------------------------------------------------------------ACACCGAGGACCGAGAAAACAAAACGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCTAGTATATGACGCTCAGAGCCGGGTTGGGCAACTCTCGCCAGGCTACGGTGAGATTTGGGTGCCCGCGGCTTCTCACGTCAGACTCCGGCATATAACGCTCAGAGTCTTTGGCGCGATTCCGCTGCACCGAGCCCCGAGGTGGCAACACCCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................TCAGACTCCGGCATATAACGCTCAGA.................................................26114.915435400123
................................................................................TCAGACTCCGGCATATAACGCTCAGAG................................................27114.36484500021
................................................................................TCAGACTCCGGCATATAACGCTCAG..................................................25111.36151300002
.....TATATGACGCTCAGAGCCGGGTTGG.............................................................................................................................2511.001000001
.....TATATGACGCTCAGAGCCGGGTTGGG............................................................................................................................2611.001000001
...........................................................................TCACGTCAGACTCCGGCATATAACGC......................................................26201.00209000110
................................................................................TCAGACTCCGGCATATAACGCTCAGAGTC..............................................29101.0010100090
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGGCAAC......2961.006000060
................................................................................TCAGACTCCGGCATATAACGCTCAGAGT...............................................28100.808700010
.........................................................................TCTCACGTCAGACTCCGGCATATAACGC......................................................28200.7515800070
...........................................................................TCACGTCAGACTCCGGCATATAACGCT.....................................................27160.6310710020
.............................................................................................TATAACGCTCAGAGTCTTTGGCGC......................................2420.501100000
..............................................................................................ATAACGCTCAGAGTCTTTGGCGCGA....................................2520.501100000
.............................................................................................TATAACGCTCAGAGTCTTTGG.........................................2120.501100000
..............................................................................................ATAACGCTCAGAGTCTTTGGCG.......................................2220.501000010
..............................................................................................ATAACGCTCAGAGTCTTTGGCGCG.....................................2420.501100000
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGGCA........2760.503300000
........................................................................TTCTCACGTCAGACTCCGGCATATAA.........................................................26200.459900000
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGT............2450.402200000
........................................................................TTCTCACGTCAGACTCCGGCATATAACGC......................................................29200.408400040
.................................................................................CAGACTCCGGCATATAACGCTCAGAG................................................26110.364400000
.........................................................................TCTCACGTCAGACTCCGGCATATAA.........................................................25200.357600010
..............................................................................................ATAACGCTCAGAGTCTTTGGCGACT....................................2530.331000010
.......TATGACGCTCAGAGCCGGGTTGG.............................................................................................................................2330.331000001
........................................................................................................................TCCGCTGCACCGAGCCCCGAGGTGG..........2560.332200000
.....................................TCGCCAGGCTACGGTGAGATTTGGG.............................................................................................2570.292200000
.........................................................................TCTCACGTCAGACTCCGGCATATAACGCT.....................................................29160.254300010
...........................................................................TCACGTCAGACTCCGGCATATAACGCTC....................................................28160.254400000
........................................................................TTCTCACGTCAGACTCCGGCATAT...........................................................24200.204400000
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGCAA.......2950.201100000
.........................................................................TCTCACGTCAGACTCCGGCATATA..........................................................24200.204300010
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTG...........2550.201100000
..............................................TACGGTGAGATTTGGGTGCCCGCGA....................................................................................2550.201000001
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGG.............2350.201000010
........................................................................TTCTCACGTCAGACTCCGGCATATA..........................................................25200.204200020
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGCA........2850.201100000
.......................................................................................................................TTCCGCTGCACCGAGCCCCGAGGTGGC.........2750.201100000
................................................................................TCAGACTCCGGCATATAACGCT.....................................................22160.193000021
........................................................................................................................TCCGCTGCACCGAGCCCCGAGG.............2260.171000010
.....................................TCGCCAGGCTACGGTGAGATTTGGGTGC..........................................................................................2870.141100000
..............................................TACGGTGAGATTTGGGTG...........................................................................................1870.141100000
..............................................TACGGTGAGATTTGGGTC...........................................................................................1870.141100000
............................................................................................................................CTGCACCGAGCCCCGAGGTGGCAAC......2570.141100000
.............................................................................................................................TGCACCGAGCCCCGAGGTGGCAACACA...2770.141100000
..........................................................................................................................CGCTGCACCGAGCCCCGAGGTGGC.........2470.141100000
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTG...........2370.141100000
......................................CGCCAGGCTACGGTGAGATTTGGG.............................................................................................2470.141100000
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTGGCAT.......2770.141000010
.....................................TCGCCAGGCTACGGTGAGATTTGGGTC...........................................................................................2770.141100000
.........................................................................................................................CCGCTGCACCGAGCCCCGAGGTGGC.........2570.141000010
..........................................................................CTCACGTCAGACTCCGGCATATAACGCT.....................................................28160.132200000
................................................................................TCAGACTCCGGCATATAACGCTC....................................................23160.132000020
........................................................................TTCTCACGTCAGACTCCGGCATC............................................................23200.102100010
......................................................................................TCCGGCATATAACGCTCAGAGTCT.............................................24100.101100000
............................................................................CACGTCAGACTCCGGCATATAACGC......................................................25200.102200000
........................................................................TTCTCACGTCAGACTCCGGCATATAAC........................................................27200.102100010
....................................................................................ACTCCGGCATATAACGCTCAGAGT...............................................24100.101100000
.....................................................................................CTCCGGCATATAACGCTCAGAGTCT.............................................25100.101100000
................................................................................TCAGACTCCGGCATATAACGC......................................................21200.102000011
..........................................................................CTCACGTCAGACTCCGGCATATAACG.......................................................26200.102200000
........................................................................TTCTCACGTCAGACTCCGGCATA............................................................23200.102100010
.................................................................................CAGACTCCGGCATATAACGCTCAGAGTC..............................................28100.101000010
........................................................................TTCTCACGTCAGACTCCGGC...............................................................20200.102200000
.........................................................................TCTCACGTCAGACTCCGGCA..............................................................20200.102200000
.................................................................................CAGACTCCGGCATATAACGCTCAG..................................................24110.091100000
...............................................................................GTCAGACTCCGGCATATAACGCTCAG..................................................26110.091100000
.................................................................................CAGACTCCGGCATATAACGCTCAGA.................................................25110.091100000
................................................................................TCAGACTCCGGCATATAACGCTCA...................................................24110.091100000
................................................................................TCAGACTCCGGCATATAACGCTCAGCC................................................27110.091100000
..................................................................................AGACTCCGGCATATAACGCTCAGAG................................................25110.091100000
................................................................................TCAGACTCCGGCATATAACGCTCAGAC................................................27110.091000010
..................................................................................AGACTCCGGCATATAACGCTCAGA.................................................24110.091100000
................................................................................TCAGACTCCGGCATATAACGCTCAGAA................................................27110.091010000
..............................................................................CGTCAGACTCCGGCATATAACGCT.....................................................24160.061010000
............................................................................CACGTCAGACTCCGGCATATAACGCT.....................................................26160.061000001
.........................................................................TCTCACGTCAGACTCCGG................................................................18200.051100000
.........................................................................TCTCACGTCAGACTCCGGCATA............................................................22200.051100000
....................................................................CGGCTTCTCACGTCAGACTCC..................................................................21200.051100000
........................................................................TTCTCACGTCAGACTCCGGCATCC...........................................................24200.051100000
.........................................................................TCTCACGTCAGACTCCGGCAT.............................................................21200.051100000
...........................................................................TCACGTCAGACTCCGGCATC............................................................20200.051000010
..........................................................................CTCACGTCAGACTCCGGCA..............................................................19200.051100000
........................................................................TTCTCACGTCAGACTCCGGCATATAAAA.......................................................28200.051100000
..........................................................................CTCACGTCAGACTCCGGCAT.............................................................20200.051100000
.........................................................................TCTCACGTCAGACTCCGGC...............................................................19200.051100000
........................................................................TTCTCACGTCAGACTCCGGCATTC...........................................................24200.051100000
........................................................................TTCTCACGTCAGACTCCGGCATATAAA........................................................27200.051100000
...........................................................................TCACGTCAGACTCCGGCATATAACG.......................................................25200.051000001
.........................................................................TCTCACGTCAGACTCCGGCATATAACG.......................................................27200.051100000
........................................................................TTCTCACGTCAGACTCCGGCATATAACG.......................................................28200.051100000
droVir3
TC-----------------------------------------------------------------------------------------------------------TTCAGCTCCGCTCCGCTGCATCGAGACCTAAAGGAGCGGCTTCCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droPer2
T-----------------------------------------------------------------------------------------------------------------------------ACACCGAGGACCGAGAAAACAAAACGCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/17/2015 at 10:38 PM