ID:

dmo_595

 Coordinate:

scaffold_6370:1957-2107 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2 -28.1 -28.0

Flybase annnotation

exon [dmoj_GLEANR_243:1]; CDS [Dmoj\GI17632-cds]; intron [Dmoj\GI17632-in]

Repeatable elements

NameClassFamilyStrand
DM1731_I-intLTRCopia-
mature
  1. scaffold_59:1686-1709 +
  2. scaffold_172:18-41 +
  3. scaffold_659:497-520 +
  4. scaffold_1651:1374-1397 +
  5. scaffold_1780:3953-3976 +
  6. scaffold_2582:2645-2668 +
  7. scaffold_2803:4958-4981 +
  8. scaffold_3798:2473-2496 +
  9. scaffold_4590:11652-11675 +
  10. scaffold_4667:331-354 +
  11. scaffold_5671:911-934 +
  12. dmo_595  scaffold_6370:1978-2001 +
  13. scaffold_6451:17650-17673 +
  14. scaffold_6498:3102778-3102801 +
  15. scaffold_6500:31567614-31567637 +
  16. scaffold_6680:7992942-7992965 +
  17. scaffold_6680:8000394-8000417 +
  18. dmo_2567  scaffold_6680:23051547-23051570 +
  19. scaffold_6680:23062193-23062216 +
  20. scaffold_6680:23077859-23077882 +
  21. scaffold_6483:71584-71607 +
  22. scaffold_1777:3478-3501 +
  23. scaffold_3464:48-71 +
  24. scaffold_4066:964-987 +
  25. scaffold_4262:4129-4152 +
  26. scaffold_4741:3749-3772 +
  27. scaffold_6405:72851-72874 +
  28. scaffold_6413:42787-42810 +
  29. scaffold_6482:2720993-2721016 +
  30. scaffold_6680:23084363-23084386 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAACGTCGTCGACTGAACAACAGCTCAGCTAGGGATAGAATTGATTTAAGTAATTTAGTTGCAAATTTGTTCTTGAATAAAACGGACTGCATTTAAGCAGTAAAATATCAAAACATCTTTTTTTTACCGTTTAAATAAAAAAAGAACTTAACTTGTCACTGTTGAGGTATGCCGTGCATACATCCATTTGGTGTACATACAATCTTAATTTCGCCGCCAGTGCAAAGATGAATCGCACGCTCTCTAGTCT
**************************************************...((((((..(((....)))..)))))).......(((((......)))))...((((((((...(((((((((............))))))))).((((((........))))))((((((...)))))).....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
.......................................................................TCTTGAATAAAACGGACTGCATTT............................................................................................................................................................ 24 0 20 0.45 9 6 1 1 1
...................AACAGCTCAGCTTGGTAGAG.................................................................................................................................................................................................................... 20 3 12 0.33 4 1 3 0 0
.......................................................................TCTTGAATAAAACGGACTGCATTTAAGC........................................................................................................................................................ 28 0 20 0.30 6 5 0 1 0
................................................................................................AGCAGTAAAATATCAAAACATCTTT.................................................................................................................................. 25 0 6 0.17 1 1 0 0 0
...........................................GATTTAAGTAATTTAGTTGCAAAT........................................................................................................................................................................................ 24 0 20 0.15 3 3 0 0 0
...........................................GATTTAAGTAATTTAGTTGCAAATTTG..................................................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0
...........................................GATTTAAGTAATTTAGTTGCAAATTTGT.................................................................................................................................................................................... 28 0 20 0.10 2 1 1 0 0
.......................................................................TCTTGAATAAAACGGACTGCATT............................................................................................................................................................. 23 0 20 0.10 2 1 0 1 0
....................ACAGCTCAGCTTGGTAGAG.................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0
..............................................................................................................................................................................................................................GCAAAGATGAATCGCACGCTCTCT..... 24 0 11 0.09 1 1 0 0 0
................................................................................................................................................................................................................................AAAGATGAATCACACGCTCTCTAGTC. 26 1 11 0.09 1 1 0 0 0
.......................................................................TCTTGAATAAAACGGACTGCATTC............................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0
........................................................................CTTGAATAAAACGGACTGC................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0
.......................................................................TCTTGAATAAAACGGACTGC................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
..........................CAGCTAGGGATAGAATTGATTTAAGTA...................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
......................................................................TTCTTGAATAAAACGGACTGCATT............................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0
.......................................................................TCTTGAATAACACGGACTGCATT............................................................................................................................................................. 23 1 20 0.05 1 0 0 1 0
......................................................TTTAGTTGCAAATTTGTTCTTG............................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
........................................................................CTTGAATAAAACGGACTGCATTTAAGC........................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGTTGCAGCAGCTGACTTGTTGTCGAGTCGATCCCTATCTTAACTAAATTCATTAAATCAACGTTTAAACAAGAACTTATTTTGCCTGACGTAAATTCGTCATTTTATAGTTTTGTAGAAAAAAAATGGCAAATTTATTTTTTTCTTGAATTGAACAGTGACAACTCCATACGGCACGTATGTAGGTAAACCACATGTATGTTAGAATTAAAGCGGCGGTCACGTTTCTACTTAGCGTGCGAGAGATCAGA
**************************************************...((((((..(((....)))..)))))).......(((((......)))))...((((((((...(((((((((............))))))))).((((((........))))))((((((...)))))).....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
 V041
embryo
............................................................ACGTATATACCAGAACTTATT.......................................................................................................................................................................... 21 3 20 0.70 14 10 3 0 1 0
.......................CGAGTCGATCCCTATCTTAACTAAAT.......................................................................................................................................................................................................... 26 0 20 0.65 13 8 0 5 0 0
.......................CGAGTCGATCCCTATCTTAACTAAATT......................................................................................................................................................................................................... 27 0 20 0.60 12 12 0 0 0 0
........................................................................................ACGTAAATTCGTCATTTTATAGTTTT......................................................................................................................................... 26 0 7 0.43 3 3 0 0 0 0
.......................................................................................................................................................................................AGGTAAACCACATGTATGTTAGAATT.......................................... 26 0 9 0.33 3 3 0 0 0 0
.....................................................................................................................................................................................GTAGGTAAACCACATGTATGTTAGAATT.......................................... 28 0 9 0.33 3 1 2 0 0 0
..........................GTCGATCCCTATCTTAACTAAATTCATT..................................................................................................................................................................................................... 28 0 20 0.30 6 6 0 0 0 0
.................................................................................................................TGTAGAAAAGGAATGGCAAAAT.................................................................................................................... 22 3 4 0.25 1 0 0 0 1 0
........................................................................................ACGTAAATTCGTCATTTTATAGTT........................................................................................................................................... 24 0 8 0.25 2 2 0 0 0 0
................................................................TTAAACAAGAACTTATTTTGCCTGACGT............................................................................................................................................................... 28 0 20 0.20 4 4 0 0 0 0
...........................CCGATCCCTATCTTAACTAAATTCATT..................................................................................................................................................................................................... 27 1 20 0.20 4 0 0 4 0 0
............................................................................................AAATTCGTCATTTTATAGTTTTGTAGAAA.................................................................................................................................. 29 0 6 0.17 1 1 0 0 0 0
............................................................ACGTATATACCAGAACTTAT........................................................................................................................................................................... 20 3 20 0.15 3 0 3 0 0 0
............................CGATCCCTATCTTAACTAAATTCATTA.................................................................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0
....................................................CTAAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 29 1 20 0.15 3 3 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTTA........................................................................................................................................ 26 1 7 0.14 1 1 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTTGT....................................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
........................................................................................ACGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 25 0 7 0.14 1 1 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTT......................................................................................................................................... 25 0 7 0.14 1 1 0 0 0 0
......................................................................................CCACGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 27 2 7 0.14 1 1 0 0 0 0
.................................................................................................CGTCATTTTATAGTTTTG........................................................................................................................................ 18 0 8 0.13 1 1 0 0 0 0
......................................................................................TGACGTAAATTCGTCATTTTATAGT............................................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0
...................................................................................AAATGACGTAAATTCGTCATTTTATAGT............................................................................................................................................ 28 3 8 0.13 1 1 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTT........................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0
.................................................................................................................................................................................GTATGTAGGTAAACCACATGTATGT................................................. 25 0 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................TGTAGGTAAACCACATGTATGTTAGAATT.......................................... 29 0 9 0.11 1 0 1 0 0 0
...................................................................................................................................................................................ATGTAGGTAAACCACATGTATGTT................................................ 24 0 9 0.11 1 1 0 0 0 0
........................................................................................................................................................................................GGTAGACCACATGTATGTTAGAAT........................................... 24 1 9 0.11 1 0 1 0 0 0
..........................................................................................................................................................................ACGGCACGTATGTAGGTAAACCACATGT..................................................... 28 0 9 0.11 1 1 0 0 0 0
.........................................................................................................................................................................................GTAAACCACATGTATGTTAGAATT.......................................... 24 0 9 0.11 1 0 1 0 0 0
........................................................................................................................................................................................GGTAAACCACATGTATGTTAGAAT........................................... 24 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................................................................................AGGTAAACCACATGTATGTTAGAAT........................................... 25 0 9 0.11 1 1 0 0 0 0
........................................................................................................................................................................................GGTAAACCACATGTATGTTAGAATT.......................................... 25 0 9 0.11 1 1 0 0 0 0
........................................................................................................................................................................................GGTAGACCACATGTATGTTAGAATT.......................................... 25 1 9 0.11 1 0 1 0 0 0
............................................................................................................................................................................................AACCACATGTATGTTAGAATTAAAGCG.................................... 27 0 9 0.11 1 1 0 0 0 0
......................................................................................................................................................................................AAGGTAAACCACATGTATGTTAGAATT.......................................... 27 1 9 0.11 1 1 0 0 0 0
..........................................................................................................................................................................ACGGCACGTATGTAGGTAAACCACAT....................................................... 26 0 9 0.11 1 1 0 0 0 0
......................................................................................................................................................................................TAGGTAAACCACATGTATGTTAGAATT.......................................... 27 0 9 0.11 1 0 1 0 0 0
.................................................................................................................................................................................TTATGTAGGTAAACCACATGTATGTT................................................ 26 1 9 0.11 1 1 0 0 0 0
............................................................................................................................................................................GGCACGTATGTAGGTAAACCACATGT..................................................... 26 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................................................................................AGGTAAACCACATGTATGTTAGAATC.......................................... 26 1 9 0.11 1 0 0 1 0 0
.....................................................TAAATCAACGTTTAAACAAGAACTTATTT......................................................................................................................................................................... 29 0 20 0.10 2 2 0 0 0 0
......................................................AAATCAACGTTTAAACAAGAACTT............................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
............................CGATCCCTATCTTAACTAAA........................................................................................................................................................................................................... 20 0 20 0.10 2 2 0 0 0 0
......................................................AAATCAACGTTTAAACAAGAACTTATTT......................................................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................................TCACGTTTCTACTTAGCGTGCGAGAGATC... 29 0 11 0.09 1 1 0 0 0 0
............................................................................................................................................................................................................................CACGTTTCTACTTAGCGTGCGAGAGAT.... 27 0 11 0.09 1 1 0 0 0 0
................................................................................................................................................................................................................................TTTCTACTTAGCGTGCGAGAGA..... 22 0 11 0.09 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCACGTTTCTACTTAGCGTGCGAGAGAT.... 28 1 11 0.09 1 0 1 0 0 0
............................................................................................................................................................................................................................CACGTTTCTACTTAGCGT............. 18 0 12 0.08 1 0 0 1 0 0
............................................................................................................................................................................GGCACGTATGCAGGTACAC............................................................ 19 2 12 0.08 1 0 1 0 0 0
..............................................................................................................................................................TGACAACTCCATACGGCACGTA....................................................................... 22 0 12 0.08 1 1 0 0 0 0
...............................................................................................................................................................GACAACTCCATACGGCACGTAT...................................................................... 22 0 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................................................................TGAATGAAAGCGGCTGTCA............................. 19 3 15 0.07 1 1 0 0 0 0
...........................CCGATCCCTATCTTAACTAAATCCAT...................................................................................................................................................................................................... 26 2 20 0.05 1 0 0 1 0 0
.......................CGAGTCGATCCCTATCTTAACTAAA........................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................CAACTTATTTTGCCTGACGTAAATTCGT....................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...........................TCGATCCCTATCTTAAATA............................................................................................................................................................................................................. 19 1 20 0.05 1 0 0 1 0 0
.........................................................................................................TAGAGGTTTGTAGAAAAA................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0
...........................CCGATCCCTATCTTAACTAAATTCGA...................................................................................................................................................................................................... 26 3 20 0.05 1 0 0 1 0 0
.........................AGTCGATCCCTATCTTAACTAAATT......................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
............................CGATCCCTATCTTAACTAAATTCAGT..................................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0
...........................TCGATCCCTATCTTAACTAAATTCATAGA................................................................................................................................................................................................... 29 2 20 0.05 1 1 0 0 0 0
..........................GTCGATCCCTATCTTAACTAAATT......................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
.........................AGTCGATCCCTATCTTAACTAAATTCAT...................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
........................................TAACTAAATTCATTAAATCAACG............................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
...........................TCGATCCCTATCTTAACTAAATTCATC..................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
..........................GTCGATCCCTATCTTTACTAAATTAAT...................................................................................................................................................................................................... 27 2 20 0.05 1 0 0 0 0 1
......................................................AAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
..........................GTCGAACCCTATCTTAACTAAATTCAT...................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
.....................................................CAAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
.....................GTCGAGTCGATCCCTATCTTAACTA............................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
........................GAGTCGATCCCTATCTTAACTAAATTC........................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
...........................TCGATCCCTATCTTAACTCAATTCAT...................................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0
..........................GTCGATCCCTATCTTAACTAAATTCAT...................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1
..........................GTCGATCCCTATCTTAACTAAATTAAT...................................................................................................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6370:1907-2157 + dmo_595 CCA-------------ACGTCGTCGAC--TGAACAACAGCT-CAGC-TAGGGATA----GAATTGATTTA-AG-T----------------AATTTAGTTGCAAATTTGTTCTTGAA-TAAAACGGACTGCA--TT----------TAAGCAGTAAAATATCAAAA---------CATCTTT-TTTTTA------C-C----GTTTAAATAAAAAAAGAACTT-----------------AACTTGTCACTGTTGAGGTATGCCGTGCATACATCCATTTGGTGTACATACAATCTTAATTTCGCCGCCAGTGCAAAG------AT----GA-----ATCGCACGCTCTCTAGTCT
droVir3 scaffold_12253:7103-7315 + CCA-------------ACGCCGCTGTTGCTAAGCCACAAGT--TAC-TAGGGCTA----GAATTGATTTA-AGTT----------------TATTTAGTTGCAAATTGACA-TCAAA-TAAAGGAAGTCT----TGCTTCCC--------------------------TAAAAATTATATTT-TTTTCA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACTTGCACAAAGATCCGTACAGAGGACAGACCATT-TAACTTCGCTATTAATATCGAA-------T----TA-----ATAGAGCACC--------T
droGri2 scaffold_14624:37926-38020 + TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCAGGTACGCAGTACAAACGTCCAGTTAATGTAAGTACAACTACAACTCGGCCACTAACGCCAAT------AT----AA-----ATCGCACGCTCTCCAGCCT
droWil2 scf2_1100000004965:237361-237495 - ATCGTCTACATAGACAACGAT----------------------------------------------------------------------------------------------------------------------------------------------------------TACATTT-TGCTTG------C-TGTTT-----------------------GT---------------------ATAGACATGGTAAGCAGTGCATACATCCATATGGTGTAGATACAATTTTAACTACGCTGCTAGGGCCAAG------AT----AA-----CACGAACACTCTTCAAACG
dp5 Unknown_group_680:6840-6935 + GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTGAGGTATGCCGTACATACATCCATTTGGTTGACATATAATTTCAATTCTGCTGCTAGCGCAAGA------AT----AA-----ATCGCACGCTCTCCAGTCT
droPer2 scaffold_89:135537-135632 + GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTGAGGTATGCCGTACATACATCCATTTGGTTGACATATAATTTCAATTCTGCTGCTAGCGCAAGA------AT----AA-----ATCGCACGCTCTCCAGTCT
droAna3 scaffold_13228:519553-519748 - CCGCTCTGCCG-----ACGGCTGTGCCGAAAAGCCTTAG-T-AAGCTCA-GGGTA----GAATTGGTTTA-AG-T----------------TTTTCAGTTTCAAAATTACC-ATAAA-AGAATAAAGTACT-------------------------------ATAACTTCC-----------------------------------AAATAAAAAGGAAAGTTTT---------------AACTT------------------------------------GTATA------CGTCAAGCTCTGTTTTTCTTTCTCTGACCACTTCCTTTATAGACATCTGCAAT----T-TTACC
droBip1 scf7180000396712:3317435-3317539 + ACCGGTAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------AGAAAAAAGATACGCGGTGCAGACATCCATTTGATGGAGATGAAGCTTGAGCTCCGCCGCCAGTCCTATA------AA----AA-----AGCGCGCC----------C
droKik1 scf7180000302784:11954-12065 - AGA-------------C-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCACTCAGATCGCTGTTGAGATACGCCGTGCATACATCTATTTGGTGAAGATGTAGCTTGAGCTCCGCCGCCAGTGCAATA------AT----GA-----ATCGCACACTCTCCAATCG
droFic1 scf7180000453774:7333-7440 + CCA-------------ACAGCAGA--------ACAATAGCT-TAGCTCA-GGGTA----GAATTGGTTTA-AG-T----------------AAATCAGTGGCAAATT-----TTAAA-TAAAGAAAGTTGAATAAATA-AAACTA----------AT-----AAAA---------ATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT
droEle1 scf7180000487616:6129-6261 - TCG-------------ACGTCGCTGCCC-CAACCCACAGCT-TAGATCA-GGGTATTTTGAAATGAATAA-AG-T----------------C-----ATCTCAAATTGAACTTCAAA-GAAATAAAA---------------CGT----------TC-----AAAA---------CTTATTTTT---CG-------------GTTTTAATTATCCTGGAAATT--------------------------------------------------------------------------------------------------------------------------------AACTT
droRho1 scf7180000774216:17401-17495 + TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGAGGTACGCCGTGCATACATCCATTTGGTGAAGGTAAAGTTTGAGCTCCGCCGCTATTGCTATC------AT----AA-----AACGCACGCTCTCCAGTCG
droBia1 scf7180000302089:9142-9252 + TAC-------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCACTAAAGTAGTTGCTTAAGTACGGTGTACATACGTCCACCTGATGCAGGTACACACCAAGCTCTGCTTCTTGGGCCAAT------AT----AA-----AAAGCACACTCTCAAGCCT
droTak1 scf7180000412776:3424-3518 - TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGAGGTACGCCGTGCATACATCCATCTGGTGAACGTAGAGTTCCATTTCAGCTGCCATGGCCAAA------AT----CA-----ACCGGATGCTTTCCAATCT
droEug1 scf7180000408832:3661-3794 + CCA-------------GCGCCGCCGCC----ACCCACAGCTATAAATTAGGGATC----G-ATAGG-TAA-AG-T----------------AGAGTAGTTCCGATCTGAATCTCGAA-TAAATAAGA---------------CATCCGAATTGTAAAA--------------T--------TTG---AA-------------GTTTTAATTAT-TTGGAAATT-----------------AAC-------------------------------------------------------------------------------------------------------------TTGT
dm3 chr3LHet:2209148-2209391 + CCG-------------ACGACTTCACT--T----GATTGCT-------AGGGAC-------------TTAGGG-AAACATTTTGTACGCTAGATTTAGTTTCAAATGATAAATTGCAATAAACGGT--CGCT--TGCGATCT--------------------------TCAAAATCAAA-TCGA---TAACTGTAATTATTA-----------------------ACTTATACAGTTTCTGATAAGTCGCTGTTTAGGTATGCCGTGCATACATCCATTTGGTGTACACAGAGATTTAATTCCGCCGCCATCGCCAAA------AC----AA-----GTCGTATGCTCTCCAATCT
droSim2 2l:22000022-22000141 - TTG-------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACAGTTTCTGATATGTCGCTGTTTAGGTATGCCGTGCATATGTTCATTTGGTGTTAATAGAGATTGAATTCCGCTGCCATCGCCAAG------AC----AT-----GTCGTATGCTCTCCAATCT
droSec2 scaffold_12209:710-851 + AGTCTC-------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-TCCATA------A-TGTTC-----------------------ATATAGACTTCTTCGCTTAATTCGCTAGTTAAATATGCTGTCGATACATCCATCTGATGTAGAAATAAGTTATGCTCAACAGCCAGAGATATA------AT----AA-----GTCCCACCGACAAATATCT
droYak3 v2_chrUn_1298:1143-1274 - CCA-------------CCAAAGAC---------TCGCATCT--TGT-TAGGGACA----G------CTTAGGG-T----------------AATTCAGTTGCAAATTGGAT-TTAAA-CAAATAAAGTCGAA--AGTGAACTCCA----------AT-----A---------TATTTTATTT---------------------------------------------------------------------------------------------------------------TTTTTACTTTGCTACCAACAAAGTA------A---------------------------TTTA
droEre2 scaffold_4721:42162-42320 - CAG-------------CCGCAGCCAA--------CTCAGCT-TAGCTTAGGGATA----GCATTGATCTA-AG-T----------------A-ATCAGTCACAATCTTACATCTAAA-TAAAGAACACCGAA--ATT--ACT---------------------------------------TTA---AA-------------GTGTTTAATTTATAAAGTATT----------------AACT---TATATGTTCATATAA----------------GCAGGTGTAAATAA----------------------------------------------AAAGAA-----------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCA-------------ACGTCGTCGAC--TGAACAACAGCT-CAGC-TAGGGATA----GAATTGATTTA-AG-T----------------AATTTAGTTGCAAATTTGTTCTTGAA-TAAAACGGACTGCA--TT----------TAAGCAGTAAAATATCAAAA---------CATCTTT-TTTTTA------C-C----GTTTAAATAAAAAAAGAACTT-----------------AACTTGTCACTGTTGAGGTATGCCGTGCATACATCCATTTGGTGTACATACAATCTTAATTTCGCCGCCAGTGCAAAG------AT----GA-----ATCGCACGCTCTCTAGTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................TCTTGAA-TAAAACGGACTGCA--TT----------T.................................................................................................................................................................................................................24200.459610011
..............................................................................................................TCTTGAA-TAAAACGGACTGCA--TT----------TAAGC.............................................................................................................................................................................................................28200.306500010
....................................................................................................................................................AGCAGTAAAATATCAAAA---------CATCTTT-.............................................................................................................................................................................2560.171100000
................................................................GATTTA-AG-T----------------AATTTAGTTGCAAAT..........................................................................................................................................................................................................................................................24200.153300000
................................................................GATTTA-AG-T----------------AATTTAGTTGCAAATTTG.......................................................................................................................................................................................................................................................27200.153300000
................................................................GATTTA-AG-T----------------AATTTAGTTGCAAATTTGT......................................................................................................................................................................................................................................................28200.102100001
..............................................................................................................TCTTGAA-TAAAACGGACTGCA--TT----------..................................................................................................................................................................................................................23200.102100010
........................................................................................................................................................................................................................................................................................................................GCAAAG------AT----GA-----ATCGCACGCTCTCT.....24110.091100000
..............................................................................................................TCTTGAA-TAAAACGGACTGCA--TT----------C.................................................................................................................................................................................................................24200.051100000
...............................................................................................................CTTGAA-TAAAACGGACTGC.................................................................................................................................................................................................................................19200.051100000
..............................................................................................................TCTTGAA-TAAAACGGACTGC.................................................................................................................................................................................................................................20200.051100000
..........................................CAGC-TAGGGATA----GAATTGATTTA-AG-T----------------A........................................................................................................................................................................................................................................................................27200.051100000
.............................................................................................................TTCTTGAA-TAAAACGGACTGCA--TT----------..................................................................................................................................................................................................................24200.051000010
.............................................................................................TTTAGTTGCAAATTTGTTCTTG.................................................................................................................................................................................................................................................22200.051000001
...............................................................................................................CTTGAA-TAAAACGGACTGCA--TT----------TAAGC.............................................................................................................................................................................................................27200.051100000
droVir3
CCA-------------ACGCCGCTGTTGCTAAGCCACAAGT--TAC-TAGGGCTA----GAATTGATTTA-AGTT----------------TATTTAGTTGCAAATTGACA-TCAAA-TAAAGGAAGTCT----TGCTTCCC--------------------------TAAAAATTATATTT-TTTTCA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACTTGCACAAAGATCCGTACAGAGGACAGACCATT-TAACTTCGCTATTAATATCGAA-------T----TA-----ATAGAGCACC--------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................TGACA-TCAAA-TAAAGGAAGTCT----TGC...........................................................................................................................................................................................................................2513.003000000000000000000000000000020010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGCACAAAGATCCGTACAGAGGACA....................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGCACAAAGATCCGTACAGAGGACAGA..................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATT-TAACTTCGCTATTAATATCGA.......................................2411.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................TGACA-TCAAA-TAAAGGAAGTCT----TGCTT.........................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...................................................................TTA-AGTT----------------TATTTAGTTGCAAATTGACA-TC..................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................AAATTGACA-TCAAA-TAAAGGAAGTCT----T.............................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................TGACA-TCAAA-TAAAGGAAGTCT----TGCTTC........................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................TGACA-TCAAA-TAAAGGAAGTCT----TG............................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGCAA............................................................................................................................................................................................................................................................27200.90180000000000000000000000000000108000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGT.................................................................................................................................................................................................................................................................22200.5010000001100000000000000000100001020000000400000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTG...............................................................................................................................................................................................................................................................24200.5010000000000000010000000000010050110000000000000000000000000000010
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTAAC..............................................................................................25200.408003000000000000000000000100000000000202000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------A....................................................................................................21200.408000000000000000000000000106000000000000000000000001000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGC..............................................................................................................................................................................................................................................................25200.408000000000000000000000000000080000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGCA.............................................................................................................................................................................................................................................................26200.357000000000000000000000000000030030000001000000000000000000000000
..........................................................................................................................................................................................TCA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAAC..............................................................................................28200.306001000000000000000000000000400000000100000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAG..................................................................................................................................................................................................................................................................25200.306000000000000000000000000005000000000100000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGCAAA...........................................................................................................................................................................................................................................................28200.255000000000000000000000000010030000000000000000000000000000000010
...........................................TAC-TAGGGCTA----GAATTGATTTA-AGTT----------------.........................................................................................................................................................................................................................................................................26200.255000000000000000000000000000103000000000100000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAGTTC...............................................................................................................................................................................................................................................................28200.255000000000000000000000000000010040000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAAA..............................................................................................27200.255000000000000000000000000005000000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAGT.................................................................................................................................................................................................................................................................26200.204000000000000000000000000004000000000000000000000000000000000000
..................................................................................................................AAA-TAAAGGAAGTCT----TGC...........................................................................................................................................................................................................................18200.204002000101000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTAA...............................................................................................24200.204000000000000000000000000020000000000200000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACT.............................................................................................26200.153000000000000000000000000000200000000100000000000000000000000000
........................................T--TAC-TAGGGCTA----GAATTGATT................................................................................................................................................................................................................................................................................................21200.153000000000000000003000000000000000000000000000000000000000000000
...........................................TAC-TAGGGCTA----GAATTGATTTA-AGT..........................................................................................................................................................................................................................................................................................25200.153000000000000000000000000000001110000000000000000000000000000000
...........................................TAC-TAGGGCTA----GAATTGATTTA-AG...........................................................................................................................................................................................................................................................................................24200.153000001000000000000000000000020000000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACTTG...........................................................................................2880.131000000000000000000000000000100000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAGTT................................................................................................................................................................................................................................................................27200.102000000000000000000000000010000010000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATT.................................................................................................24200.102000000000000000000000000001000001000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACC.............................................................................................28200.102000000000000000000000000000000200000000000000000000000000000000
...............................................TAGGGCTA----GAATTGATTTA-AGTT----------------TATC.....................................................................................................................................................................................................................................................................27200.102000000000000000000000000000002000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTA...................................................................................................................................................................................................................................................................24200.102001000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................TCA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACC.............................................................................................29200.102000000000000000000000000000000020000000000000000000000000000000
..............................................................................................................A-TCAAA-TAAAGGAAGTCT----TGC...........................................................................................................................................................................................................................21200.102000000000000000000000000000000000100001000000000000000000000000
..................................................................................................................AAA-TAAAGGAAGTCT----TGCTT.........................................................................................................................................................................................................................20200.102000000000020000000000000000000000000000000000000000000000000000
...........................................TAC-TAGGGCTA----GAATTGATTT...............................................................................................................................................................................................................................................................................................21200.102000001000000000000010000000000000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAGTTG...............................................................................................................................................................................................................................................................28200.102000000000000000000000000001000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ACAGAGGACAGACCATT-T...........................................................18200.102000000002000000000000000000000000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTT................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................TA----GAATTGATTTA-AGTT----------------TATTTAGT.................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
............................................................................................................ACA-TCAAA-TAAAGGAAGTCT----TGCTTC........................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAGAGGACAGACCATT-TAACT.......................................................21200.051100000000000000000000000000000000000000000000000000000000000000
.............................................................ATTGATTTA-AGTT----------------TATTTAGTTGCA.............................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................ATTGATTTA-AGTT----------------TATTTAGTTGCAAA...........................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................A-TCAAA-TAAAGGAAGTCT----TGCTT.........................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
.....................................................TA----GAATTGATTTA-AGTT----------------TATTTAGTT................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAAC..............................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACTTC...........................................................................................28200.051000000000000000000000000010000000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------TATTTAGTC................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................AGAGGACAGACCATT-TAACTTCG....................................................23200.051000000000000000000001000000000000000000000000000000000000000000
............................................................................................................ACA-TCAAA-TAAAGGAAGTCT----TGCTT.........................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AAT..................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
...............................................TAGGGCTA----GAATTGATTTA-AGTT----------------T........................................................................................................................................................................................................................................................................24200.051000000010000000000000000000000000000000000000000000000000000000
...................................................................................................................AA-TAAAGGAAGTCT----TGCTTCC.......................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
...................................................GCTA----GAATTGATTTA-AGTT----------------TATTTAGT.................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................A------T-C----GTT-TAATAAACTTTGG------------------------------------AA...................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAT...............................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................ATTGATTTA-AGTT----------------TATTTAGTTGC..............................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
...............................................TAGGGCTA----GAATTGATTTA-AGTT----------------TA.......................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................ATTGATTTA-AGTT----------------TATTT....................................................................................................................................................................................................................................................................18200.051000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................A-TCAAA-TAAAGGAAGTCT----TGCT..........................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGCC.............................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AA...................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------A....................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTAACA.............................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
....................................................CTA----GAATTGATTTA-AGTT----------------T........................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTTGG------------------------------------AATG.................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
............................................................AATTGATTTA-AGTT----------------TATTTAGTTGCCC............................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................TCA------T-C----GTT-TAATAAACTTTGG------------------------------------AATTA................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCA------T-C----GTT-TAATAAACTTTGG------------------------------------AA...................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
........................................T--TAC-TAGGGCTA----GAATTGATTTA-AGTT----------------T........................................................................................................................................................................................................................................................................28200.051000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AGAGGACAGACCATT-TAACTTCGC...................................................24200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTT............................................................................................................................................17200.051000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................C----GTT-TAATAAACTTTGG------------------------------------AATT.................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................T-C----GTT-TAATAAACTTTGG------------------------------------AATTA................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................C----GTT-TAATAAACTTTGG------------------------------------AATTAA...............................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CA------T-C----GTT-TAATAAACTTT...........................................................................................................................................18200.051000000000000000000000000000000100000000000000000000000000000000
droGri2
TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCAGGTACGCAGTACAAACGTCCAGTTAATGTAAGTACAACTACAACTCGGCCACTAACGCCAAT------AT----AA-----ATCGCACGCTCTCCAGCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATCGTCTACATAGACAACGAT----------------------------------------------------------------------------------------------------------------------------------------------------------TACATTT-TGCTTG------C-TGTTT-----------------------GT---------------------ATAGACATGGTAAGCAGTGCATACATCCATATGGTGTAGATACAATTTTAACTACGCTGCTAGGGCCAAG------AT----AA-----CACGAACACTCTTCAAACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................TACAATTTTAACTACGCTGCTAGGG...........................................2520.50100100
....................................................................................................................................................................................................................................................................................................................TAGGGCCAAG------AT----AA-----CACGAACACTCT.......2640.25100010
............................................................................................................................................................................................................................................................................................................TACGCTGCTAGGGCCAAG------AT----AA-----CACGAT.............2840.25101000
.....................................................................................................................................................................................T-TGCTTG------C-TGTTT-----------------------GT---------------------ATAGACATGGT.................................................................................................26200.05100010
dp5
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTGAGGTATGCCGTACATACATCCATTTGGTTGACATATAATTTCAATTCTGCTGCTAGCGCAAGA------AT----AA-----ATCGCACGCTCTCCAGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTGC................................................25315.334603312000280
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTG.................................................2434.671401400000000
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTGCT...............................................2634.67140920001110
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTGCTA..............................................2733.67110700000040
............................................................................................................................................................................................................................................................................................................................GA------AT----AA-----ATCGCACGCTCTCCAGTC.2450.8040400000000
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGC...................................................2230.6720200000000
............................................................................................................................................................................................................................................................................................GACATATAATTTCAATTCTGCTGCTA..............................................2630.6720200000000
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCT..................................................2330.6720100000100
..........................................................................................................................................................................................................................................................................................TTGACATATAATTTCAATTCTGCTGC................................................2630.6720200000000
.....................................................................................................................................................................................................................................................................................................................................T----AA-----ATCGCACGCTCTCCAGTC.2150.6030300000000
..................................................................................................................................................................................................................................................................TATGCCGTACATACATCCATTTGGT.........................................................................2520.5010100000000
..................................................................................................................................................................................................................................................................TATGCCGTACATACATCCATTTGG..........................................................................2420.5010100000000
.T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTGAGGTATGCCGTAC........................................................................................2220.5010100000000
..................................................................................................................................................................................................................................................................TATGCCGTACATACATCCATT.............................................................................2120.5010100000000
..........................................................................................................................................................................................................................................................................................................................AAGA------AT----AA-----ATCGCACGCTCTCCAGTC.2650.4020200000000
.....................................................................................................................................................................................................................................................................................................................................T----AA-----ATCGCACGCTCTCCAGTCT2250.4020200000000
.........................................................................................................................................................................................................................................................................................................................CAAGA------AT----AA-----ATCGCACGCTCTCCAG...2550.4020100000010
.....................................................................................................................................................................................................................................................................................................................................T----AA-----ATCGCACGCTCTCCAGT..2050.4020200000000
............................................................................................................................................................................................................................................................................................GACATATAATTTCAATTCTGCTGC................................................2430.3310100000000
................................................................................................................................................................................................................................................................................................TATAATTTCAATTCTGCTG.................................................1930.3310100000000
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTG....................................................2130.3310000000010
..........................................................................................................................................................................................................................................................................................TTGACATATAATTTCAATTCTGCTG.................................................2530.3310100000000
..........................................................................................................................................................................................................................................................................................TTGACATATAATTTCAATTCTGCT..................................................2430.3310100000000
.......................................................................................................................................................................................................................................................................................................TCAATTCTGCTGCTAGCGCAAGA------A...............................2430.3310100000000
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTGCTAG.............................................2830.3310100000000
...............................................................................................................................................................................................................................................................................................ATATAATTTCAATTCTGCTGC................................................2130.3310010000000
............................................................................................................................................................................................................................................................................................GACATATAATTTCAATTCTGCTG.................................................2330.3310100000000
.............................................................................................................................................................................................................................................................................TACATCCATTTGGTTGACATATAATT.............................................................2640.2510000000100
....................................................................................................................................................................................................................................................................................................................................AT----AA-----ATCGCACGCTCTCCAG...2050.2010100000000
.........................................................................................................................................................................................................................................................................................................................CAAGA------AT----AA-----ATCGCACGCTCTCCAGTC.2750.2010100000000
............................................................................................................................................................................................................................................................................................................................GA------AT----AA-----ATCGCACGCTCTCC.....2050.2010100000000
.....................................................................................................................................................................................................................................................................................................................................T----AA-----ATCGCACGCTCTCCAG...1950.2010100000000
..........................................................................................................................................................................................................................................................................................................................................AA-----ATCGCACGCTCTCCAGTCT2150.2010100000000
..........................................................................................................................................................................................................................................................................................................................AAGA------AT----AA-----ATCGCACGCTCTCCAG...2450.2010100000000
droPer2
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTGAGGTATGCCGTACATACATCCATTTGGTTGACATATAATTTCAATTCTGCTGCTAGCGCAAGA------AT----AA-----ATCGCACGCTCTCCAGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................TGACATATAATTTCAATTCTGCTGC................................................2590.111010000
droAna3
CCGCTCTGCCG-----ACGGCTGTGCCGAAAAGCCTTAG-T-AAGCTCA-GGGTA----GAATTGGTTTA-AG-T----------------TTTTCAGTTTCAAAATTACC-ATAAA-AGAATAAAGTACT-------------------------------ATAACTTCC-----------------------------------AAATAAAAAGGAAAGTTTT---------------AACTT------------------------------------GTATA------CGTCAAGCTCTGTTTTTCTTTCTCTGACCACTTCCTTTATAGACATCTGCAAT----T-TTACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................TGTTTTTCTTTCTCTGACCACTTCC.............................25200.051010000
............................................................................................................................................................................................................................................................................................................TCTGTTTTTCTTTCTCTGACCACT................................24200.051100000
droBip1
ACCGGTAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------AGAAAAAAGATACGCGGTGCAGACATCCATTTGATGGAGATGAAGCTTGAGCTCCGCCGCCAGTCCTATA------AA----AA-----AGCGCGCC----------CSizeHit CountTotal NormTotal
No Reads
droKik1
AGA-------------C-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCACTCAGATCGCTGTTGAGATACGCCGTGCATACATCTATTTGGTGAAGATGTAGCTTGAGCTCCGCCGCCAGTGCAATA------AT----GA-----ATCGCACACTCTCCAATCGSizeHit CountTotal NormTotal
No Reads
droFic1
CCA-------------ACAGCAGA--------ACAATAGCT-TAGCTCA-GGGTA----GAATTGGTTTA-AG-T----------------AAATCAGTGGCAAATT-----TTAAA-TAAAGAAAGTTGAATAAATA-AAACTA----------AT-----AAAA---------ATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCG-------------ACGTCGCTGCCC-CAACCCACAGCT-TAGATCA-GGGTATTTTGAAATGAATAA-AG-T----------------C-----ATCTCAAATTGAACTTCAAA-GAAATAAAA---------------CGT----------TC-----AAAA---------CTTATTTTT---CG-------------GTTTTAATTATCCTGGAAATT--------------------------------------------------------------------------------------------------------------------------------AACTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGAGGTACGCCGTGCATACATCCATTTGGTGAAGGTAAAGTTTGAGCTCCGCCGCTATTGCTATC------AT----AA-----AACGCACGCTCTCCAGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
TAC-------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCACTAAAGTAGTTGCTTAAGTACGGTGTACATACGTCCACCTGATGCAGGTACACACCAAGCTCTGCTTCTTGGGCCAAT------AT----AA-----AAAGCACACTCTCAAGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
TCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGAGGTACGCCGTGCATACATCCATCTGGTGAACGTAGAGTTCCATTTCAGCTGCCATGGCCAAA------AT----CA-----ACCGGATGCTTTCCAATCTSizeHit CountTotal NormTotal
No Reads
droEug1
CCA-------------GCGCCGCCGCC----ACCCACAGCTATAAATTAGGGATC----G-ATAGG-TAA-AG-T----------------AGAGTAGTTCCGATCTGAATCTCGAA-TAAATAAGA---------------CATCCGAATTGTAAAA--------------T--------TTG---AA-------------GTTTTAATTAT-TTGGAAATT-----------------AAC-------------------------------------------------------------------------------------------------------------TTGTSizeHit CountTotal NormTotal
No Reads
dm3
CCG-------------ACGACTTCACT--T----GATTGCT-------AGGGAC-------------TTAGGG-AAACATTTTGTACGCTAGATTTAGTTTCAAATGATAAATTGCAATAAACGGT--CGCT--TGCGATCT--------------------------TCAAAATCAAA-TCGA---TAACTGTAATTATTA-----------------------ACTTATACAGTTTCTGATAAGTCGCTGTTTAGGTATGCCGTGCATACATCCATTTGGTGTACACAGAGATTTAATTCCGCCGCCATCGCCAAA------AC----AA-----GTCGTATGCTCTCCAATCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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........................ACT--T----GATTGCT-------AGGGAC-------------TTAGGG-A.........................................................................................................................................................................................................................................................................................24200.60120000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000020200000000000000000000000000000000000000000000100000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................AATTGCAATAAACGGT--CGCT--TG............................................................................................................................................................................................................................22200.60120000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020010000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000010000000
...........................................................................................................................................TCT--------------------------TCAAAATCAAA-TCGA---.........................................................................................................................................................................18200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040700000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CAAA-TCGA---TAACTGTAATTATTA-----------------------A..................................................................................................................................24200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050510010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................T----GATTGCT-------AGGGAC-------------TTAGG............................................................................................................................................................................................................................................................................................19200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010001000010000000000000000000000000000000000000000000000000000100000000000000000000000001000000000003010000000
.......................................................................................................................AAACGGT--CGCT--TGCGATC.......................................................................................................................................................................................................................18200.55110000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AAA-TCGA---TAACTGTAATTA.............................................................................................................................................................19200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................C-------------TTAGGG-AAACATTTTGTACGCT..........................................................................................................................................................................................................................................................................23200.55110000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000010000000
...................................ATTGCT-------AGGGAC-------------TTAGGG-AAACATTT..................................................................................................................................................................................................................................................................................26200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000100000000000000000006010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................AACATTTTGTACGCTAGATTTAGTT................................................................................................................................................................................................................................................................25200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000006300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ATAAATTGCAATAAACGGT--CGCT--TGC...........................................................................................................................................................................................................................26200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000040020100003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GCAATAAACGGT--CGCT--TGCG..........................................................................................................................................................................................................................20200.55110000000000000000000000000000000000000302000100010102000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTTAGTTTCAAATGATAAATTGCAA..............................................................................................................................................................................................................................................25200.55110000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000100000000000000000000000000000000000000000000401001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTGCT-------AGGGAC-------------TTAGGG-AAACA.....................................................................................................................................................................................................................................................................................22200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001000201010000000000000000000000000000000000000000000002000000000000000000000000000000001000000010000000000000000
.......................CACT--T----GATTGCT-------AGGGAC-------------T................................................................................................................................................................................................................................................................................................19200.55110000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000006000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000
..................................GATTGCT-------AGGGAC-------------TTAGGG-AAA.......................................................................................................................................................................................................................................................................................22200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000002000002000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000
............................................................................................................TAAATTGCAATAAACGGT--CGCT--TG............................................................................................................................................................................................................................24200.50100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000000000000000000010100000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CAAA------AC----AA-----GTCGTATGCTCTCCAATC.2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CCAAA------AC----AA-----GTCGTATGCTCTCCAA...2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ATAAACGGT--CGCT--TGCGAT........................................................................................................................................................................................................................19200.50100000000000000000000000000000000000000200000000000002000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TGATAAGTCGCTGTTTAGGTATGCCA...........................................................................................2660.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.............................................................................CATTTTGTACGCTAGATTTAGTT................................................................................................................................................................................................................................................................23200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100013000000000000000000000000000000000000001000000000000000000000000020020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCCGTGCATACATCCATTTGGTGTA......................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTGTTTAGGTATGCCGTGCATACATC.................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CACT--T----GATTGCT-------AGGGAC-------------TTAGGG-AAAC......................................................................................................................................................................................................................................................................................28200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................CAAA-TCGA---TAACTGTAATTATTA-----------------------AC.................................................................................................................................25200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010000000000000000000000000000000000000000000000000000000000000000000052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACT--T----GATTGCT-------AGGGAC-------------TTAGGG-..........................................................................................................................................................................................................................................................................................23200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000020030000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000200000010000000
.............................................................................................................................................................................................................................................TCTGATAAGTCGCTGTTTAGGTATG..............................................................................................2560.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCGCCAAA------AC----AA-----GTCGTATGCTCTC......2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TAGGTATGCCGTGCATACATCCAT..............................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ATCGCCAAA------AC----AA-----GTCGTATGCTCTC......2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................AAAATCAAA-TCGA---TAACTGTAATTA.............................................................................................................................................................25200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTG-------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACAGTTTCTGATATGTCGCTGTTTAGGTATGCCGTGCATATGTTCATTTGGTGTTAATAGAGATTGAATTCCGCTGCCATCGCCAAG------AC----AT-----GTCGTATGCTCTCCAATCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................TGTTAATAGAGATTGAATTCCGCTGC................................................2612.00200000000002000000
.............................................................................................................................................................................................................................................................................TATGTTCATTTGGTGTTAATAGAGA..............................................................2512.00200000002000000000
.......................................................................................................................................................................................................................................................................................TGGTGTTAATAGAGATTGAATTCCGC...................................................2612.00200000000002000000
.........................................................................................................................................................................................................................................................................TGCATATGTTCATTTGGTGTTAATAGAGA..............................................................2912.00200000002000000000
............................................................................................................................................................................................................................................TTCTGATATGTCGCTGTTTAGGTA................................................................................................2412.00200000001001000000
...............................................................................................................................................................................................................................................TGATATGTCGCTGTTTAGGTATGCCG...........................................................................................2612.00200000000000020000
..................................................................................................................................................................................................................................................................................TCATTTGGTGTTAATAGAGATTGAA.........................................................2511.00100010000000000000
..................................................................................................................................................................................................................................................TATGTCGCTGTTTAGGTATGCCGTGCATA.....................................................................................2911.00100000000000010000
...............................................................................................................................................................................................................................................................................TGTTCATTTGGTGTTAATAGAGATTGA..........................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................TGTTAATAGAGATTGAATTCCGC...................................................2311.00100000000001000000
............................................................................................................................................................................................................................................TTCTGATATGTCGCTGTTTAGGT.................................................................................................2311.00100000001000000000
..........................................................................................................................................................................................................................................GTTTCTGATATGTCGCTGTTTAGGTA................................................................................................2611.00100000000000010000
.............................................................................................................................................................................................................................................TCTGATATGTCGCTGTT......................................................................................................1711.00100000000001000000
.............................................................................................................................................................................................................................................TCTGATATGTCGCTGTTTAGGTATGC.............................................................................................2611.00100000000000010000
............................................................................................................................................................................................................................................................................ATATGTTCATTTGGTGTTAATAGAGA..............................................................2611.00100000001000000000
droSec2
AGTCTC-------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-TCCATA------A-TGTTC-----------------------ATATAGACTTCTTCGCTTAATTCGCTAGTTAAATATGCTGTCGATACATCCATCTGATGTAGAAATAAGTTATGCTCAACAGCCAGAGATATA------AT----AA-----GTCCCACCGACAAATATCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGAGA..........................................24122.172621050
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGAG...........................................23121.25156090
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGAGATA........................................26111.18136061
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGA............................................22120.4254010
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGAGAT.........................................25110.2732010
..............................................................................................................................................................................................................................................................TAAATATGCTGTCGATACATCCATCTGAA.........................................................................2950.2011000
........................................................................................................................................................................................................TC-----------------------ATATAGACTTCTTCGCTTAATTC............................................................................................................2550.2010010
.................................................................................................................................................................................................................................ATATAGACTTCTTCGCTTAA...............................................................................................................2050.2011000
........................................................................................................................................................................................CCATA------A-TGTTC-----------------------ATATAGACTTCTTCGCT..................................................................................................................2850.2010010
..........................................................................................................................................................................................................................................TCTTCGCTTAATTCGCTAGTTAAA..................................................................................................2460.1711000
AGTCTC-------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-TCCATA------A-TGT............................................................................................................................................................24150.1322000
.........................................................................................................................................................................................................................................................................................................TGCTCAACAGCCAGAGATATA------AT----AA-----GTC................28120.0811000
..................................................................................................................................................................................................................................................................................................TAAGTTATGCTCAACAGCCAGT............................................22120.0810100
.................................................................................................................................................................................................................................................................................................................AGCCAGAGATATA------AT----AA-----GT.................19130.0810010
AGTCTC-------------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-TCCATA------A-T..............................................................................................................................................................22150.0711000
droYak3
CCA-------------CCAAAGAC---------TCGCATCT--TGT-TAGGGACA----G------CTTAGGG-T----------------AATTCAGTTGCAAATTGGAT-TTAAA-CAAATAAAGTCGAA--AGTGAACTCCA----------AT-----A---------TATTTTATTT---------------------------------------------------------------------------------------------------------------TTTTTACTTTGCTACCAACAAAGTA------A---------------------------TTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................GACA----G------CTTAGGG-T----------------AATTCAGT.................................................................................................................................................................................................................................................................2180.63503000020000
.............................................T-TAGGGACA----G------CTTAGGG-T----------------AAT......................................................................................................................................................................................................................................................................2190.33302000010000
............................................GT-TAGGGACA----G------CTTAGGG-T----------------AA.......................................................................................................................................................................................................................................................................21100.30303000000000
......................................................................GGG-T----------------AATTCAGTTGCAAATTGGAT-....................................................................................................................................................................................................................................................2450.20101000000000
...........................................................G------CTTAGGG-T----------------AATTCAGTTGCAAA...........................................................................................................................................................................................................................................................2360.17101000000000
....................................................ACA----G------CTTAGGG-T----------------AATTCAGTT................................................................................................................................................................................................................................................................2180.13101000000000
..................................................GGACA----G------CTTAGGG-T----------------AATTCAGT.................................................................................................................................................................................................................................................................2280.13101000000000
..................................................GGACA----G------CTTAGGG-T----------------AATTCAG..................................................................................................................................................................................................................................................................2180.13101000000000
.....................................................CA----G------CTTAGGG-T----------------AATTCAGTTG...............................................................................................................................................................................................................................................................2180.13101000000000
.....................................................CA----G------CTTAGGG-T----------------AATTCAGTTGC..............................................................................................................................................................................................................................................................2280.13101000000000
............................................GT-TAGGGACA----G------CTTAGGG-T----------------AAT......................................................................................................................................................................................................................................................................2290.11101000000000
...............................................TAGGGACA----G------CTTAGGG-T----------------AATT.....................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
CAG-------------CCGCAGCCAA--------CTCAGCT-TAGCTTAGGGATA----GCATTGATCTA-AG-T----------------A-ATCAGTCACAATCTTACATCTAAA-TAAAGAACACCGAA--ATT--ACT---------------------------------------TTA---AA-------------GTGTTTAATTTATAAAGTATT----------------AACT---TATATGTTCATATAA----------------GCAGGTGTAAATAA----------------------------------------------AAAGAA-----------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................GCT-TAGCTTAGGGATA----GCATT....................................................................................................................................................................................................................................................................................................2150.2010000100
........................................T-TAGCTTAGGGATA----GCATTG...................................................................................................................................................................................................................................................................................................2060.1710000100

Generated: 05/17/2015 at 10:39 PM