ID:

dmo_594

 Coordinate:

scaffold_6361:4587-4742 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.3

Flybase annnotation

CDS [Dmoj\GI11249-cds]; CDS [Dmoj\GI11249-cds]; exon [dmoj_GLEANR_11236:2]; exon [dmoj_GLEANR_11236:1]; intron [Dmoj\GI11249-in]

No Repeatable elements found

mature
  1. scaffold_1834:4240-4261 +
  2. scaffold_3753:816-837 -
  3. scaffold_5305:1313-1334 -
  4. dmo_594  scaffold_6361:4668-4689 +
  5. scaffold_6482:219352-219373 +
  6. scaffold_6482:495572-495593 +
  7. scaffold_6838:71499-71520 -
star
  1. scaffold_180:2810-2833 -
  2. scaffold_1834:4200-4223 +
  3. scaffold_2804:5153-5176 +
  4. scaffold_3436:1327-1350 -
  5. scaffold_3753:854-877 -
  6. scaffold_4176:362-385 +
  7. scaffold_4719:5940-5963 -
  8. scaffold_5305:1351-1374 -
  9. scaffold_5760:1502-1525 +
  10. scaffold_6350:42590-42613 -
  11. dmo_594  scaffold_6361:4628-4651 +
  12. scaffold_6363:37888-37911 -
  13. scaffold_6467:48042-48065 -
  14. scaffold_6482:219312-219335 +
  15. scaffold_6482:495532-495555 +
  16. scaffold_6500:30922404-30922427 +
  17. scaffold_6500:30968110-30968133 -
  18. scaffold_6838:22422-22445 +
  19. scaffold_6838:71537-71560 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGAGGAGAGCAACGCGGAAGAGGTCGCCGACCAGCTCCCGCCACGCGAGGTAGGAGGCGGCAGGGAGCGATGTCCCTCCGCCCCAAATCCTGCCTCGAGGGTGGCGTCGCGAGCGGAAGCCGGAGAGCCAGAGAAGCTTTGGACGAGGAGGGGCGAGCGGCGAGAGGATGCGTAGCCGATGCCGACTCCACGGCGCCGATTAGAGGACGATCGAGGCGATAACCGACGCCGCGACTCCGCGCGGGTCGCGTTTCG
*******************************************************************************************..(((((((((((((.((.((.((....))))))..)))......)))))...)))))....******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V041
embryo
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGG....................................................................................................... 22 0 7 5.00 35 31 3 1 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGG...................................................................................................... 23 0 7 4.14 29 29 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGG........................................................................................................ 21 0 7 4.00 28 23 5 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGC..................................................................................................... 24 0 7 2.29 16 14 1 0 1 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGC............... 24 0 7 2.14 15 13 2 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGC............. 26 0 7 1.29 9 8 1 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCG................ 23 0 7 1.14 8 7 1 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCG.................................................................................................... 25 0 7 1.00 7 7 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGA.......................................................................................................... 19 0 7 0.86 6 3 3 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAGGGG...................................................................................................... 22 0 7 0.71 5 5 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCC................. 22 0 7 0.71 5 3 1 1 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGAGG........................................................................................................... 23 0 7 0.71 5 5 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAG......................................................................................................... 20 0 7 0.71 5 3 1 1 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGAGGA.......................................................................................................... 24 0 7 0.57 4 4 0 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAGGG....................................................................................................... 21 0 7 0.43 3 3 0 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAGGGGC..................................................................................................... 23 0 7 0.43 3 3 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCGA................................................................................................... 26 0 7 0.43 3 3 0 0 0 0
.........GCAACGCGGAAGAGGTCGCCGACCAG............................................................................................................................................................................................................................. 26 0 6 0.33 2 0 0 2 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGA............................................................................................................. 21 0 7 0.29 2 2 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCG.............. 25 0 7 0.29 2 2 0 0 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGAG............................................................................................................ 22 0 7 0.29 2 2 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGG........................................................................................................... 18 0 7 0.29 2 1 0 0 0 1
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCGGG.......... 29 0 7 0.29 2 2 0 0 0 0
...........................................................................................................TCGCGAGCGGAAGCCGGAGAGCCA............................................................................................................................. 24 0 11 0.18 2 2 0 0 0 0
.........GCAACGCGGAAGAGGTCGCCAACCA.............................................................................................................................................................................................................................. 25 1 6 0.17 1 0 0 1 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGCC..................................................................................................... 24 1 7 0.14 1 1 0 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAG......................................................................................................... 19 0 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCAGCGACTCCGCG.............. 25 1 7 0.14 1 1 0 0 0 0
...................................................................................................................................GAGAAGCTTTAGACGAGGAGG........................................................................................................ 21 1 7 0.14 1 0 1 0 0 0
.................................................................................................................................CAGAGAAGCTTTGGACGAGGAGGG....................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGTAA................................................................................................... 26 2 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTC.................. 21 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................GAGTAGCTTTGGACGAGGAG......................................................................................................... 20 1 7 0.14 1 0 1 0 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGAGGAGG........................................................................................................ 26 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................AGCCAGAGAAGCTTCGGACGAGG........................................................................................................... 23 1 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCG............ 27 0 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGAGGC.................. 21 2 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGT............. 26 1 7 0.14 1 1 0 0 0 0
...........................................................................................................TCGCGAGCGGAAGCCGGAGAGCCAGAG.......................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
..................................................................................................................................CGAGAAGCTTTGGACGAGGAGGGG...................................................................................................... 24 1 7 0.14 1 1 0 0 0 0
..........................................................................................................................................................................................................................GAAAACCGACGCCGCGACTCCGCGC............. 25 1 7 0.14 1 1 0 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAGGGGCG.................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCGAT.................................................................................................. 27 1 7 0.14 1 1 0 0 0 0
..............................................................................................................................AGCCAGAGAAGCTTTGGACGAGGAGGG....................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
....................................................................................................................................AGAAGCTTTGGACGAGGAGG........................................................................................................ 20 0 7 0.14 1 1 0 0 0 0
....................................................................................................................................................................................................................CCCAGCGATAACCGACGCCGCGACTCCG................ 28 3 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CTATAACCGACGCCGCGACTCCGC............... 24 1 7 0.14 1 0 1 0 0 0
...................................................................................................................................GAGAAGCTTTGGACGAGGAGGTG...................................................................................................... 23 1 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................CTATAACCGACGCCGCGACTCC................. 22 1 7 0.14 1 0 1 0 0 0
......................................................................................................................................AAGCTTTGGACGAGGAGGGGCGAG.................................................................................................. 24 0 15 0.13 2 2 0 0 0 0
......................................................................................................................................AAGCTTTGGACGAGGAGGGG...................................................................................................... 20 0 15 0.13 2 2 0 0 0 0
..GAGGAGAGCAACGCGGAAGAGGTCG..................................................................................................................................................................................................................................... 25 0 8 0.13 1 0 0 1 0 0
.........................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCGGT.......... 29 1 8 0.13 1 1 0 0 0 0
...................................................................................................................................................................................................GCCGATTAGAGGACGATCGAGGC...................................... 23 0 10 0.10 1 1 0 0 0 0
...........................................................................................................................................ATGGACGAGGAGGGACGA................................................................................................... 18 2 20 0.10 2 2 0 0 0 0
..........................................................................................................................................................................................CTCCACGGCGCCGATTAGAGG................................................. 21 0 10 0.10 1 0 1 0 0 0
............................................................................................................CGCGAGCGGAAGCCGGAGAG................................................................................................................................ 20 0 11 0.09 1 1 0 0 0 0
...............................................................................................................GAGCGGAAGCCGGAGAGCCAG............................................................................................................................ 21 0 11 0.09 1 1 0 0 0 0
..................................................................................................................................................................................................................................AGGCCGTGACTCCGCACGGGT......... 21 3 12 0.08 1 0 0 0 1 0
......................................................................................................................................AAGCTTTGGACGAGGAGGGGC..................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................AAGCTTTGGACGAGGAGGGGCGA................................................................................................... 23 0 15 0.07 1 1 0 0 0 0
............................................................................................................................................TGGACGAGGAGGGGCGAGC................................................................................................. 19 0 15 0.07 1 0 1 0 0 0
.............................................................................................................................................GGACGAGGAGGGGCGAAC................................................................................................. 18 1 15 0.07 1 0 0 1 0 0
....................................................................................................................................................................................................................CTAGGCGAAAACCGACGGC......................... 19 3 17 0.06 1 1 0 0 0 0
..................................................................................................................................................................................GATGACGACACCACGGCCCC.......................................................... 20 3 18 0.06 1 0 0 0 1 0
...........................................................................................TGCCTCGAGGGTGGCGTCGCGAGC............................................................................................................................................. 24 0 19 0.05 1 0 1 0 0 0
...........................................................................................TGCCTCGAGGGTGGCGTCGCGAGCGG........................................................................................................................................... 26 0 19 0.05 1 1 0 0 0 0
...............................................................................................TCGAGGGTGGCGTCGCGAGC............................................................................................................................................. 20 0 19 0.05 1 1 0 0 0 0
.........................................................................................................................................TTATGGACGAGGAGGGACGA................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
...........................................ACGCGAGGTAGGAGGCGGCAGGG.............................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1
..............................................................................................................................................................................................................................................GGTGGGGGTCGCGTTTCG 18 3 20 0.05 1 0 0 1 0 0
..............................................................................................................................................................................................................................................CGCGGGGATCGCGGTTCG 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TCCTCCTCTCGTTGCGCCTTCTCCAGCGGCTGGTCGAGGGCGGTGCGCTCCATCCTCCGCCGTCCCTCGCTACAGGGAGGCGGGGTTTAGGACGGAGCTCCCACCGCAGCGCTCGCCTTCGGCCTCTCGGTCTCTTCGAAACCTGCTCCTCCCCGCTCGCCGCTCTCCTACGCATCGGCTACGGCTGAGGTGCCGCGGCTAATCTCCTGCTAGCTCCGCTATTGGCTGCGGCGCTGAGGCGCGCCCAGCGCAAAGC
*******************************************************************************************************..(((((((((((((.((.((.((....))))))..)))......)))))...)))))....******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
...................................................................................................................CCTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 26 0 7 4.43 31 15 15 0 1 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 25 0 7 4.29 30 21 7 0 1 1
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 24 0 7 3.57 25 13 12 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 23 0 7 3.14 22 10 12 0 0 0
........................................................................................................................................................................................................AATCTCCTGCTAGCTCCGCTATTGGCT............................. 27 0 10 3.10 31 30 1 0 0 0
.................................................................................................................CGCCTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 28 0 7 2.57 18 11 7 0 0 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAAACCT................................................................................................................ 25 0 7 2.43 17 14 3 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCGCTATTGGCT............................. 26 0 10 2.30 23 19 2 1 1 0
..........................................................................................................................................................................................................TCTCCTGCTAGCTCCGCTATTGGCT............................. 25 0 10 2.20 22 15 7 0 0 0
......................................................................................TTAGGACGGAGCTCCCACCGCAGCGCT............................................................................................................................................... 27 0 18 2.11 38 30 7 0 1 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 22 0 7 1.43 10 4 6 0 0 0
...........................................................................................................................................................................................................CTCCTGCTAGCTCCGCTATTGGCT............................. 24 0 10 1.00 10 8 2 0 0 0
..................................................................................................................GCCTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 27 0 7 1.00 7 7 0 0 0 0
......................................................................................................................CCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 23 1 7 0.71 5 0 5 0 0 0
...............................................................................................................CTCGCCTTCGGCCTCTCGGTCTCTT........................................................................................................................ 25 0 7 0.57 4 4 0 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGAA.................................................................................................................... 24 0 7 0.43 3 3 0 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGAAT................................................................................................................... 25 1 7 0.43 3 0 3 0 0 0
........................................................................................AGGACGGAGCTCCCACCGCAGCGCT............................................................................................................................................... 25 0 19 0.42 8 7 1 0 0 0
.............................................................................................................................................................................................................CCTGCTAGCTCCGCTATTGGCT............................. 22 0 10 0.40 4 1 1 2 0 0
.............................................................................................................................................................................................GTGCCGCGGCTAATCTCCTGCTAGCT......................................... 26 0 10 0.30 3 3 0 0 0 0
..................................................................................................................GCCTTCGGCCTCTCGGTCTCTTCGAA.................................................................................................................... 26 0 7 0.29 2 2 0 0 0 0
........................................................................................................................GGCCTCTCGGTCTCTTCGAAACCT................................................................................................................ 24 0 7 0.29 2 2 0 0 0 0
..............................................................................................................GCTCGCCTTCGGCCTCTCGGTCTCTT........................................................................................................................ 26 0 7 0.29 2 2 0 0 0 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAAAC.................................................................................................................. 23 0 7 0.29 2 2 0 0 0 0
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGAAACCT................................................................................................................ 27 0 7 0.29 2 0 2 0 0 0
..........................................................................................................................CCTCTCGGTCTCTTCGAAA................................................................................................................... 19 0 7 0.29 2 0 2 0 0 0
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGAAAC.................................................................................................................. 25 0 7 0.29 2 2 0 0 0 0
....................................................................................................................CTTAGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 25 1 7 0.29 2 0 2 0 0 0
.....................................................................................................................ATCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 24 1 7 0.29 2 2 0 0 0 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAAACC................................................................................................................. 24 0 7 0.29 2 2 0 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAA.................................................................................................................... 22 0 7 0.29 2 2 0 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAGA................................................................................................................... 23 1 7 0.29 2 0 2 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAAACC................................................................................................................. 25 0 7 0.29 2 2 0 0 0 0
........................................................................................................................GGCCTCTCGGTCTCTTCGAAA................................................................................................................... 21 0 7 0.29 2 2 0 0 0 0
..................................................................................................................GCCTTCGGCCTCTCGGTCTCTT........................................................................................................................ 22 0 7 0.29 2 2 0 0 0 0
.......................................................................................TAGGACGGAGCTCCCACCGCAGCGCT............................................................................................................................................... 26 0 19 0.26 5 4 1 0 0 0
..................................................................................................................................................................................................................TAGCTCCGCTATTGGCTGCGGCGCT..................... 25 0 4 0.25 1 0 1 0 0 0
............................................................................................................................................................................................................TCCTGCTAGCTCCGCTATTGGATG............................ 24 1 4 0.25 1 0 1 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCGCTATTGGCTG............................ 27 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................CCCGCTCGCCGCTCTCCTACG.................................................................................... 21 0 8 0.25 2 0 2 0 0 0
...............................................................................................................................................................................................GCCGCGGCTAATCTCCTGCTAGCT......................................... 24 0 10 0.20 2 2 0 0 0 0
.......................................................................................................................................................................................................TAATCTCCTGCTAGCTCCGCTATTGGCT............................. 28 0 10 0.20 2 2 0 0 0 0
......................................................................................TTAGGACGGAGCTCCCACCGCAGCGC................................................................................................................................................ 26 0 20 0.20 4 4 0 0 0 0
...................................................................................................................................................................................................CGGCTAATCTCCTGCTAGCTCCGCTAT.................................. 27 0 10 0.20 2 1 1 0 0 0
........................................................................................................................................................................................................AATCTCCTGCTAGCTCCGCTATTGGC.............................. 26 0 10 0.20 2 2 0 0 0 0
....................................................................................................................................................................................................................GCTCCGCTATTGGCTGCGGC........................ 20 0 5 0.20 1 1 0 0 0 0
.........................................GGTGCGCTCCATCCTCCGCCGTCCCT............................................................................................................................................................................................. 26 0 20 0.20 4 3 1 0 0 0
............................................................................................................................................................................................................TCCTGCTAGCTCCGCTATTGGCTGCATC........................ 28 2 6 0.17 1 1 0 0 0 0
.........................................................................................GGACGGAGCTCCCACCGCAGCGCT............................................................................................................................................... 24 0 19 0.16 3 1 2 0 0 0
...................................................................................................................CCTTCGGCCTCTCCGTCTCTTCGAAA................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGAA.................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0
...................................................................................................................TCTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAAAC.................................................................................................................. 24 0 7 0.14 1 0 1 0 0 0
.............................................................................................................................CTCGGTCTCTTCGAAACCTGCTCC........................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
...................................................................................................................CCTCCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTTCGAAAC.................................................................................................................. 27 0 7 0.14 1 0 1 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGATA................................................................................................................... 25 1 7 0.14 1 0 1 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTTCTAAA................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGAAAC.................................................................................................................. 26 0 7 0.14 1 1 0 0 0 0
...........................................................................................................AGCGCTCGCCTTCGGCCTCTCGGTCTC.......................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAAACCTGCT............................................................................................................. 28 0 7 0.14 1 0 1 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTTC....................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0
..................................................................................................................CCCTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 27 1 7 0.14 1 1 0 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCGTCGAAA................................................................................................................... 25 1 7 0.14 1 0 1 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTT........................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0
....................................................................................................................CTTCGGCCTCTCGGTCTCTTCGAAACCT................................................................................................................ 28 0 7 0.14 1 1 0 0 0 0
..........................................................................................................................CCTCTCGGTCTCTTCGAAACCT................................................................................................................ 22 0 7 0.14 1 1 0 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTCTTCGAAACCT................................................................................................................ 26 0 7 0.14 1 1 0 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTGCGAAA................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0
..........................................................................................................................CCTCTCGGTCTCTTCGAAACC................................................................................................................. 21 0 7 0.14 1 0 1 0 0 0
....................................................................................................................TTTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0
.......................................................................................................................CGGCCTCTCGGTCTCTTCGAGA................................................................................................................... 22 1 7 0.14 1 0 1 0 0 0
..........................................................................................................................CCTCTCGGTCTCTTCGAAACCTGCTCCT.......................................................................................................... 28 0 7 0.14 1 0 1 0 0 0
............................................................................................................................TCTCGGTCTCTTCGAAACCT................................................................................................................ 20 0 7 0.14 1 1 0 0 0 0
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGCAA................................................................................................................... 24 1 7 0.14 1 0 1 0 0 0
...........................................................................................................................CTCTCGGTCTCTTCGAAACCTGCTCCT.......................................................................................................... 27 0 7 0.14 1 0 1 0 0 0
......................................................................................................................TCGGCCTCTCTGTCTCTTCGAAA................................................................................................................... 23 1 7 0.14 1 1 0 0 0 0
.....................................................................................................................TTCGGCCTCTCGGTCTCTTCGATA................................................................................................................... 24 1 7 0.14 1 0 1 0 0 0
................................................................................................................................GGTCTCTTCGAAACCTGCTCCT.......................................................................................................... 22 0 7 0.14 1 1 0 0 0 0
.....................................................................................................................CTCGGCCTCTCGGTCTCTTCGAAA................................................................................................................... 24 1 7 0.14 1 0 1 0 0 0
...................................................................................................................CCTTCGGCCTCTCGGTCTCTTCGAGA................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0
......................................................................................................................................................CCCCGCTCGCCGCTCTCCTACGC................................................................................... 23 0 8 0.13 1 0 1 0 0 0
...............................................................................................................................................................................CGGCTACGGCTGAGGTGCCGCGGCT........................................................ 25 0 8 0.13 1 1 0 0 0 0
...................................................................................................................................................................................TACGGCTGAGGTGCCGCGGCTAATCT................................................... 26 0 9 0.11 1 1 0 0 0 0
..............................................................................................................................................AATCTCCTCCCCGCTCGCCGCTCTC......................................................................................... 25 3 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................ACGGCTGAGGTGCCGCGGCTAATCT................................................... 25 0 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................ACGGCTGAGGTGCCGCGGCTAATCTCCT................................................ 28 0 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................ACGGCTGAGGTGCCGCGGCTAATC.................................................... 24 0 9 0.11 1 1 0 0 0 0
.....................................................................................................................................................................................CGGCTGAGGTGCCGCGGCTAATCT................................................... 24 0 9 0.11 1 0 1 0 0 0
......................................................................................................................................................................................GGCTGAGGTGCCGCGGCTAATCT................................................... 23 0 9 0.11 1 1 0 0 0 0
.............................................................................................GGAGCTCCCACCGCAGCGCTCGCCT.......................................................................................................................................... 25 0 19 0.11 2 2 0 0 0 0
............................................................................................CGGAGCTCCCACCGCAGCGCTCGCCT.......................................................................................................................................... 26 0 19 0.11 2 1 1 0 0 0
............................................................................................................................................................................................................TCCTGCTAGCTCCGCTATTGGCT............................. 23 0 10 0.10 1 0 1 0 0 0
......................................................................................TTAGGACGGAGCTCCCACCGCAGCG................................................................................................................................................. 25 0 20 0.10 2 1 1 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCGCTATTGGGT............................. 26 1 10 0.10 1 0 1 0 0 0
...........................................................................................................................................................................................................TTCCTGCTAGCTCCGCTATTGGCT............................. 24 1 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCAGCTATTGGCT............................. 26 1 10 0.10 1 0 1 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCGCTATTGGC.............................. 25 0 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................................................................CCTCCTGCTAGCTCCGCTATTGGGT............................. 25 2 10 0.10 1 0 1 0 0 0
........................................................................................................................................................................................................AATCTCCTGCTAGCTCCGCTATTG................................ 24 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................................................................................AGTCTCCTGCTAGCTCCGCTATTGGCT............................. 27 1 10 0.10 1 1 0 0 0 0
...............................................................................................................................................TGCTCCTCCCCGCTCGCCGCT............................................................................................ 21 0 10 0.10 1 1 0 0 0 0
............................................................................................................................................................................................GGTGCCGCGGCTAATCTCCTGCTAGCT......................................... 27 0 10 0.10 1 1 0 0 0 0
...................................................................................................................................................................................................CGGCTAATCTCCTGCTAGCTC........................................ 21 0 10 0.10 1 0 0 1 0 0
....................................................................................................................................................................................................GGCTAATCTCCTGCTAGCTCCGCTATT................................. 27 0 10 0.10 1 1 0 0 0 0
....................................................................................................................................................................................................GGCTAATCTCCTGCTAGCTCCGCTAT.................................. 26 0 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCGCTATT................................. 22 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................................................................................TATCTCCTGCTAGCTCCGCTATTGGCT............................. 27 1 10 0.10 1 1 0 0 0 0
......................................................................................................................................................................................................CTAATCTCCTGCTAGCTCCGCTATT................................. 25 0 10 0.10 1 0 1 0 0 0
.........................................................................................................................................................................................................ATCTCCTGCTAGCTCCCCTATTGGCT............................. 26 1 10 0.10 1 0 1 0 0 0
..........................................................................................................................................................................................GAGGTGCCGCGGCTAATCTCCTGCT............................................. 25 0 10 0.10 1 1 0 0 0 0
...................................................................................................................................................................................................CGGCTAATCTCCTGCTAGCTCCGCT.................................... 25 0 10 0.10 1 0 1 0 0 0
.......................................................................................................................................................................................................GAATCTCCTGCTAGCTCCGCTATTGGCT............................. 28 1 10 0.10 1 0 1 0 0 0
......................................................................................................................................................................................................CTAATCTCCTGCTAGCTCCGCTATTGGCT............................. 29 0 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................................................................CCTCCTGCTAGCTCCGCTATTGGCT............................. 25 1 10 0.10 1 0 1 0 0 0
..........................................................................................................CAGCGCTCGCCTTCGGCCTCTCGGT............................................................................................................................. 25 0 11 0.09 1 0 1 0 0 0
........................................................................................................CGCAGCGCTCGCCTTCGGCC.................................................................................................................................... 20 0 11 0.09 1 0 1 0 0 0
..............................................................................................................GCTCGCCTTCGGCCTCTCGGT............................................................................................................................. 21 0 11 0.09 1 0 1 0 0 0
........................................................................................................CGCAGCGCTCGCCTTCGGCCT................................................................................................................................... 21 0 11 0.09 1 0 1 0 0 0
......................................................................................................................TCGGCCTCTCGGTCTATTCGAAA................................................................................................................... 23 1 11 0.09 1 0 1 0 0 0
.........................................................................................................GCAGCGCTCGCCTTCCGCCTCTCGGT............................................................................................................................. 26 1 11 0.09 1 0 0 1 0 0
...........................................................................GGAGGCGGGGTTTAGGACGGAGCT............................................................................................................................................................. 24 0 11 0.09 1 0 1 0 0 0
.........................................................................................................GCAGCGCTCGCCTTCGGCCTCTCGGT............................................................................................................................. 26 0 11 0.09 1 0 1 0 0 0
.CCTCCTCTCGATGCGCCTTCTCCAG...................................................................................................................................................................................................................................... 25 1 12 0.08 1 0 1 0 0 0
...........................GGCTGGTCGAGGGCGGTGCGCTCCAT........................................................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0
....................................................................................GTTTAGGACGGAGCTCCCACCGCAG................................................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0
............................GCTGGTCGAGGGTGGTGCGCTCCAT........................................................................................................................................................................................................... 25 1 14 0.07 1 0 0 1 0 0
....................................................................................................................................................................................................................................CGGCACTGACGTGCGCCCA......... 19 3 15 0.07 1 0 0 0 0 1
......................................................................................TTAGGACGGAGCTCCCACCGCAGCGCTC.............................................................................................................................................. 28 0 18 0.06 1 1 0 0 0 0
............................................................................................CGGAGCTCCCACCGCAGCGCTCGCGT.......................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
.........................................................................................GGACGGAGCTCCCACCGCAGTGCT............................................................................................................................................... 24 1 19 0.05 1 0 1 0 0 0
.......................................................................................AAGGACGGAGCTCCCACCGCAGCGGT............................................................................................................................................... 26 2 19 0.05 1 0 1 0 0 0
.......................................................................................AAGGACGGAGCTCCCACCGCAGCGCT............................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
..........................................................................................GACGGAGCTCCCACCGCAGCGCTCGCCT.......................................................................................................................................... 28 0 19 0.05 1 1 0 0 0 0
..........................................GTGCGCTCCATCCTCCGCCGTCCCT............................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................GGACGGAGCTCCCACCGCAGC.................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
..............................TGGTCGAGGGCGGTGCGCTCC............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
........................................................................................AGGACGGAGCTCCCACCGCAGCGC................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
........................................................................................AGGACGGAGATCCCACCGCAGCGC................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
...........................................TGCGCTCCATCCTCCGCCGTCCCT............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6361:4537-4792 + dmo_594 AGGAGGAGAG--CAA---CGCGGAAGAGGTCGCCGACCAGCTC---------------------------------------------------------------CCGCCA---CGCGAGGTAGGAGGCGGCAG--GGAGCGATGTCCCTCCGCCCCAAATCCTGCCTCGAGGGTGGCGTCGCGAGCGGAAGCCGGAGAGCCAGAGAAGCTTTGGACGAGGAGGGGCGAGCGGCGAGAGGATGCGTAGCCGATGCCGACTCCACGGCGCCGATTAGAGGACGATCGAGGCGATAACCGACGCCGCGACTCCGCGCGGGTCGCGTTTCG
droVir3 scaffold_12947:13426-13502 - AGGAAGAGTCCGCAAGTCCGCGGAGGAGCAC------------------------------------------------------------------------ATACCACCAGCGCAGGACGT-GGAGGCGGTAGAAGAAGAGATATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395260:35159-35186 - ACGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCCAGCGGCGTGAGGATG-------------------------------------------------------------------------------------
droFic1 scf7180000452471:2758-2789 - ACACGGAGGA--GGA---CGCAGAGGAGGACGCCGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777572:10854-10992 - AGCCGGAGAA--CTC---GGCACCAGAGCCCAC-GGTCAGCTCAGACAGCGACGTGGAGATTATCCTTCGGCCATGCAGGATGCCCGCCAGCAGGCCAGGAGGAAGCCGGAGGCGGAGGAC-------------------------------------------------------------------------------------------------GAGGAGAGGCAAGAGGCAAGGGGA---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGGAGGAGAG--CAA---CGCGGAAGAGGTCGCCGACCAGCTC---------------------------------------------------------------CCGCCA---CGCGAGGTAGGAGGCGGCAG--GGAGCGATGTCCCTCCGCCCCAAATCCTGCCTCGAGGGTGGCGTCGCGAGCGGAAGCCGGAGAGCCAGAGAAGCTTTGGACGAGGAGGGGCGAGCGGCGAGAGGATGCGTAGCCGATGCCGACTCCACGGCGCCGATTAGAGGACGATCGAGGCGATAACCGACGCCGCGACTCCGCGCGGGTCGCGTTTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGG.......................................................................................................2275.00353100031
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGGG......................................................................................................2374.14292900000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGG........................................................................................................2174.00282300050
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGC.....................................................................................................2472.29161401010
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGC...............2472.14151300020
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGC.............2671.299800010
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCG................2371.148700010
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCG....................................................................................................2571.007700000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGA..........................................................................................................1970.866300030
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAGGGG......................................................................................................2270.715500000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCC.................2270.715300011
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGAGG...........................................................................................................2370.715500000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAG.........................................................................................................2070.715300011
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGAGGA..........................................................................................................2470.574400000
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAGGG.......................................................................................................2170.433300000
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAGGGGC.....................................................................................................2370.433300000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCGA...................................................................................................2670.433300000
.........G--CAA---CGCGGAAGAGGTCGCCGACCAG.................................................................................................................................................................................................................................................................................................2660.332000002
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGA.............................................................................................................2170.292200000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCG..............2570.292200000
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGAG............................................................................................................2270.292200000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGG...........................................................................................................1870.292110000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCGGG..........2970.292200000
....................................................................................................................................................................................TCGCGAGCGGAAGCCGGAGAGCCA.............................................................................................................................24110.182200000
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAG.........................................................................................................1970.141100000
..........................................................................................................................................................................................................CAGAGAAGCTTTGGACGAGGAGGG.......................................................................................................2470.141100000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTC..................2170.141100000
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGAGGAGG........................................................................................................2670.141100000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCG............2770.141100000
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGT.............2670.141100000
....................................................................................................................................................................................TCGCGAGCGGAAGCCGGAGAGCCAGAG..........................................................................................................................2770.141100000
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAGGGGCG....................................................................................................2470.141100000
............................................................................................................................................................................................................GAGAAGCTTTGGACGAGGAGGGGCGAT..................................................................................................2770.141100000
.......................................................................................................................................................................................................AGCCAGAGAAGCTTTGGACGAGGAGGG.......................................................................................................2770.141100000
.............................................................................................................................................................................................................AGAAGCTTTGGACGAGGAGG........................................................................................................2070.141100000
...............................................................................................................................................................................................................AAGCTTTGGACGAGGAGGGGCGAG..................................................................................................24150.132200000
...............................................................................................................................................................................................................AAGCTTTGGACGAGGAGGGG......................................................................................................20150.132200000
..GAGGAGAG--CAA---CGCGGAAGAGGTCG.........................................................................................................................................................................................................................................................................................................2580.131000001
..................................................................................................................................................................................................................................................................................................CGATAACCGACGCCGCGACTCCGCGCGGT..........2980.131100000
............................................................................................................................................................................................................................................................................GCCGATTAGAGGACGATCGAGGC......................................23100.101100000
...................................................................................................................................................................................................................................................................CTCCACGGCGCCGATTAGAGG.................................................21100.101000010
.....................................................................................................................................................................................CGCGAGCGGAAGCCGGAGAG................................................................................................................................20110.091100000
........................................................................................................................................................................................GAGCGGAAGCCGGAGAGCCAG............................................................................................................................21110.091100000
...............................................................................................................................................................................................................AAGCTTTGGACGAGGAGGGGC.....................................................................................................21150.071100000
...............................................................................................................................................................................................................AAGCTTTGGACGAGGAGGGGCGA...................................................................................................23150.071100000
.....................................................................................................................................................................................................................TGGACGAGGAGGGGCGAGC.................................................................................................19150.071000010
....................................................................................................................................................................TGCCTCGAGGGTGGCGTCGCGAGC.............................................................................................................................................24190.051000010
....................................................................................................................................................................TGCCTCGAGGGTGGCGTCGCGAGCGG...........................................................................................................................................26190.051100000
........................................................................................................................................................................TCGAGGGTGGCGTCGCGAGC.............................................................................................................................................20190.051100000
...............................................................................................................A---CGCGAGGTAGGAGGCGGCAG--GG..............................................................................................................................................................................................23200.051010000
droVir3
AGGAAGAGTCCGCAAGTCCGCGGAGGAGCAC------------------------------------------------------------------------ATACCACCAGCGCAGGACGT-GGAGGCGGTAGAAGAAGAGATATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................CACCAGCGCAGGACGT-GGAGGC.......................................................................................................................................................................................................22200.102000000000000000000000000000000010000100000000000000000000000000
.......................................................................................................ATACCACCAGCGCAGGACGT-.............................................................................................................................................................................................................20120.081000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................CCACCAGCGCAGGACGT-GGA..........................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................CACCAGCGCAGGACGT-GGAGG........................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................CGCAGGACGT-GGAGGCGG.....................................................................................................................................................................................................18200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................CACCAGCGCAGGACGT-GGA..........................................................................................................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................GCGCAGGACGT-GGAGGCGG.....................................................................................................................................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................CACCAGCGCAGGACGT-GG...........................................................................................................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................CCAGCGCAGGACGT-GGAGG........................................................................................................................................................................................................19200.051000000000000000000000000000000000000001000000000000000000000000
droBip1
ACGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCCAGCGGCGTGAGGATG-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACACGGAGGA--GGA---CGCAGAGGAGGACGCCGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCGGAGAA--CTC---GGCACCAGAGCCCAC-GGTCAGCTCAGACAGCGACGTGGAGATTATCCTTCGGCCATGCAGGATGCCCGCCAGCAGGCCAGGAGGAAGCCGGAGGCGGAGGAC-------------------------------------------------------------------------------------------------GAGGAGAGGCAAGAGGCAAGGGGA---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:40 PM