dmo_586

CDS [Dmoj\GI21783-cds]; CDS [Dmoj\GI21783-cds]; exon [dmoj_GLEANR_6765:9]; exon [dmoj_GLEANR_6765:10]; intron [Dmoj\GI21783-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	+

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCGTATCTGCCCGGCCCCAACAACGGCAAATATGCGACGCTCAGCAAGCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCTGCAGCACGTATGCAGGCAATAGCAACAACACGCAGCACAGCAGCAACATCAGCCAGCAGCAACAGCAACAGCAACAGCAGCTGCAGCAGCAGCAGCAGCAGCACCATCACAGCAGCAGCAACACATTGAAGAACATATTCGCATCGGCCACGCTGCCCCGCTCCACGGGCAGCTCCATACGCTCCGTGCTGTCCGCGCAGACGGCCAACGCCATCTGCAAGT ***************************************************************************((.(((.(((..(((((((((((.......))))))))..)))........((.((...((..........))..)).))....((....))....((.(((((.((....)).))))).))...))).))).))........................*********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head	V110 male body
.............................................................................CTACTGAGATTCGCTTGCCT..............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0
...................................................................................................................................................................................................................GCAGCAACACATTGAAGAACATATT...................................................................................	25	0	1	1.00	1	1	0	0
...............................................................................ACTGAGATTCGCTTGCCTGCAGCACG......................................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0
.............................................................................CTACTGAGATTCGCTTGCCTGC............................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1
......................................................................................................................................................................................................CACCAGCACAGCAGCAGCAACACA.................................................................................................	24	1	2	0.50	1	0	1	0
...................................................................CGTACGACTTAAACTGAGA.........................................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0

AGCATAGACGGGCCGGGGTTGTTGCCGTTTATACGCTGCGAGTCGTTCGTCACATTCTGCGAGCTTAGCTTGCTGAAGATGACTCTAAGCGAACGGACGTCGTGCATACGTCCGTTATCGTTGTTGTGCGTCGTGTCGTCGTTGTAGTCGGTCGTCGTTGTCGTTGTCGTTGTCGTCGACGTCGTCGTCGTCGTCGTCGTGGTAGTGTCGTCGTCGTTGTGTAACTTCTTGTATAAGCGTAGCCGGTGCGACGGGGCGAGGTGCCCGTCGAGGTATGCGAGGCACGACAGGCGCGTCTGCCGGTTGCGGTAGACGTTCA *********************************************************************************((.(((.(((..(((((((((((.......))))))))..)))........((.((...((..........))..)).))....((....))....((.(((((.((....)).))))).))...))).))).))........................***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head	M060 embryo
....................................................................................................................................................................................................................................................................................................ACGTCTGCCGGTTGCGGTAA.......	20	2	2	0.50	1	1	0	0
................................................................................................................................................................................................................................................GGCCGGTGCGCCGGGGCGAGC..........................................................	21	3	4	0.25	1	0	1	0
...............................................................................................................................................................................................................TCGTCCTCATTGTGTGACTTC...........................................................................................	21	3	5	0.20	1	1	0	0
..........................................................................................................................................................................................................................................TAACGTAGCCGGTGCGATGG.................................................................	20	3	11	0.09	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6359:3775830-3776148 +	dmo_586	TCGTATCTGCCCGGCCCC--AACAACGGCAAATATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACGTATGCAGGCAATAGCAACAACACGC----AGCACAGCAGCAACATCAGCCAG---C---------------------------------------------------------AGCAACAGCAACAGCAA-----CAGCAGCTGCA------------GCAGCAGC------------------AG------------------------------CA--------GCAGCACCA----------------------------------------------------------TCA--CAG-----------------------------------------------------CAGCAGCAACACATTGAAGAACATATTCGCATCGGCCACGCTGCCCCGCTCCACGGGCAGCTCCATACGCTCCGTGCTGTCCGCGCAGACGGCCAACGC---CATCTGCAAGT
droVir3	scaffold_12928:5261571-5261904 +	dvi_8983	TCGTATCTGCCCGGGCCA--AACAATGGCAAATACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACGTATGCAGGCAATAGCAACAACACGC----AGCACAGCAGCAACATCAATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGCAGCAGCTGCAGCAGCAACAACAACAACACCAC----------------CACAGC-----AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCAACACACTGAAGAACATATTCGCATCGGCAACGCTGCCCCGCTCCACGGGCAGCTCCATACGCTCCGTGCTGTCCGCCCAGACGGCCAATGC---CATTTGCAAGT
droGri2	scaffold_14853:9934449-9934845 +		TCGTATTTGCCTGGCCCG--AACAATGGCAAATACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAACACGTATGCAGGCAATAGCAACAACAC------GCAACAGCAACAGCAGCA----G---CAGCAACAACAACAGCAACAGCAACAA-----------------------------------------------------CAACAGCAGCA---ACA------ACA---AC------------------AG------------CAGCTACTGCAGCATCAACAGCAG-----C---AACAACAAATGCAGCAACAACAAATGCAGCAA-CAGAAAC---------------------AAT----TACAGCAAC---------------AGCAGCA------ACACCAC---------AGCAGCAGCACCACACTGAAAAACATTTTCGCATCGGCCACGCTGCCCCGCTCAACGGGCAGCTCCATACGTTCCGTGCTGTCCGCCCAGACGGCTAACGCG---ATGTGCAAGT
droWil2	scf2_1100000004909:2564838-2565195 -		TCGTATTTGCCAGGACCT--AATAATGGCAAATATGCGACATTGAGCAA---------------ACAGTGTAAGACGCTCGAATCGAATGATTTCTACTGAGATTCGCTTGCCT-----GCAGCACATATGCAGGCAATAGCAACAACAC------AGCACAGCAACAGCAGCA----G---CAAC------------------------------------------------------AGCAAC-----------AGCAACCG------CA------------TCAACAAC------------------AACAACAACATCAA------------C---AACAACA--------GCATCA-------------------------------GTTGCCGCTGGGTGGCAACATC----ATACACCCAAATCAAA---------GCCAGAGTCAGAA------T------------------------AGTACGCTTAAGAATATATTCGCTTCAGCCACACTGCCCCGCTCAACGGGCAGCTCCATACGATCCGTGCTCTCGGCCCAAACGTCCAATGCA---ATGTGCAAAT
dp5	XL_group1a:4972960-4973350 +		TCGTATATGCAGGGGCCG--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAGCACCTATGCAGGCAATAGCAACAACAC------AGCCCAGCAGCAACAGCA----G---CAGCTCCAACTGCAGCTCCAGCAGCTTCAGCAGGCGCCGTCGCAGCCTCCACTCCAGCAGCAGC--------------------------AGCATCCCCA---T------C------------------AG------------------------------CAGCAGAGCAGCAACATCA------------------------TCAATCAG---------------------CAGCACC----AGCACCAAC---------------ATCAGCA------TCAGAA------------CAGCAGCAGCACCTTGAAGAACATATTCGCTTCGGCGACCCTGCCCCGTTCCACGGGCAGCTCCATCCGCTCCGTGCTCTCCGCACAGACGGCCAACGC---CATGTGCAGGT
droPer2	scaffold_2:5826655-5826981 -		TTGTCTCTGAAAGCGCCAACAACAACGACAACTGC---------AGCAACAGCCACAGCCACTGCCACTGCAACAAATGTGACGTCGACAAGTGCTGATAAAATGCAAATGCAAATGAAGCAACGCCAGCAGAAGCAGCAGCAGCAACAG-------------CAGCAG-------------AAA---------CAGCAGCAGCAGCAA-----------------------------------------------------CAGCAGCAACA---ACA------GCA---AC------------------AG------------CAGCAACAGCAGC---AACAGCAA--CAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAA-CAGCAAC---------------------AAC----AGCAACAGC---------------AGCAGCA------GCAGCAAGTTTTTGCTGTCAGCAGC---------------------------------------------------------------------------ATTAAAGTAAAAAGTGAAAACACAT-TAGCA
droAna3	scaffold_12929:976212-976542 +		TCATACCTGCCGGGACCG--AACAACGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACAC------AGTCCAGCAGCAGCAACA----G---CAGC-----------------------------------------------------------------------AGCAGCTG------CA---GCA---GCAGCAGCAGC------------------AG------CAGCAG------------C---AGC--------AGCAACATCA---A--------------------TCAATCAG---------------------TCAGATCAATCAGCACC---------------------------------AG---------------------AGTTCTCTGAAGAACATATTCGCCTCGGCCACCCTGCCCCGTTCCACCGGCAGCTCCATCCGTTCCGTGCTCTCCGCCCAGACCTCGAATGCCGGGATCTGTCGCT
droBip1	scf7180000394786:12649-12997 -		TCATACCTGCCAGGACCG--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACCCATGCAGGCAGTAGCAGCAACAC------AGTCCAGCAGCAGCAACA----G---CAGC------------------------------------------------------AGCAACAGCAGCAGCAA-----CAGCAGCAGCAGCAACTGCA---ACAGCAGC------------------AG------------------------------CAACAG--CAGCAACATCA---A--------------------TCAATCAG---------------------CCAGATCAATCAGCATC---------------------------------AG---------------------AGTTCTCTGAAGAACATATTCGCCTCGGCCACCCTGCCCCGTTCCACTGGCAGCTCCATACGCTCGGTACTCTCCGCCCAGACCTCGAATGCTGGGATATGTCGCT
droKik1	scf7180000302469:61230-61548 -		TCCTATTTGCCGGGACCC--AACAATGGAAAATATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTTGAGTCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---CAGC--------------------------------------------------------------------------AGTTGCACCTCCA------------GCAGCAGC------------------AG------CAGCAG------------C---AGCATAAC---AGCAGTCTTA----------------------------------------------------------TCAATCAGAATCAA------------------------------------------------------AGCACTTTAAAGAACATCTTTGCATCGGCCACACTGCCCCGCTCAACGGGTAGCTCCATACGGTCGGTGCTCTCGGCCCAGACTTCCAATGCCGGCATTTGTCGCT
droFic1	scf7180000454072:2000198-2000513 +		TCGTACCTGCCGGGCCCC--AACAACGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTTGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA------------------------------------------------------------------------------------------------------------------TCAGC------------------AG------------------------------CAGCAA---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGATCCAGCAGAT------CCAGAGCCAGGGCCAG---------------------AGCACGCTGAAGAACATCTTTGCCTCGGCCACCCTGCCCCGCTCCACCGGCAGCTCCATTCGGTCGGTGCTCTCTGTCCAGACCTCCAACGCGGGCATCTGCCGCT
droEle1	scf7180000491043:337380-337692 +		TCGTATTTGCCGGGACCC--AACAATGGAAAGTATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAACAACAC------AGCACAGCAGCAGCAGCA----------A------------------------------------------------------------T-----------TGCAGTTGCAACACCA------------GCAGCAGC------------------AA------CATCAG------------C---AACAGCAG---AGCAGCCTAA----------------------------------------------------------TCAATCAGAACCAGA------------------------------------------------------------TCAAGAACATCTTTGCATCGGCCACATTGCCACGCTCCACGGGCAGTTCCATTCGATCGGTGCTGTCGGTGCAGAACTCCAATGCTGGCATTTGTCGCT
droRho1	scf7180000779976:79512-79824 +		TCTTATCTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---CAG-----------------------------------------------------------------------------TTGCAACTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------------TTCAGAG------TCAG---------------------AGCACGCTGAAGAACATCTTTGCATCGGCCACCTTGCCCCGCTCCACGGGCAGTTCCATCCGGTCGGTCCTCTCTGCCCAGACATCCAATGCTGGCATATGCCGCT
droBia1	scf7180000302069:827136-827454 -		ACGTATCTGCCAGGACCG--AACAACGGAAAGTACGCCACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAATGACTTCTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACACACAGCAAGCACAGCAGCAGCA-------------T-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------G------TCAGAGTCAGAGCCAG---------------------AGCACACTGAAGAACATCTTTGCATCGGCCACCTTGCCGCGCTCCACGGGCAGTTCCATCCGCTCGGTGCTCTCTGTCCAGACCTCCAATGCGGGCATTTGTCGCT
droTak1	scf7180000413933:62588-62900 +		ACATATCTGCCAGGACCA--AACAATGGAAAGTACGCGACGCTTAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCACCA----G---CAGC---------------------------------------------------------AAA-----------------TGCTGGTT---------------------C------------------AA------------------------------CAGCAG---AGCAGCCTTA----------------------------------------------------------TCAATCAGAACCAGG---------------TTCAGAG------TCAG---------------------AGCACGCTGAAGAACATTTTTGCATCGGCCACCTTGCCCCGCTCCACGGGCAGCTCCATCCGCTCGGTGCTTTCTGTCCAGACTTCCAATGCGGGCATTTGCCGCT
droEug1	scf7180000408973:232540-232849 +		ACGTATCTACCGGGGCCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----------T-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------G------TCAGAG------TCAA---------------------AACACGCTAAAGAACATCTTCGCATCGGCCACCCTGCCCCGCTCTACGGGCAGTTCCATCCGGTCTGTGCTTTCTGTGCAGACCTCCAATGCGGGCATATGCCGCT
dm3	chrX:1115264-1115576 -		ACGTATTTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAAACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCACC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATTCGGTCCGTGCTCTCCGTTCAAACCTCCAATGCGGGCATTTGCCGCT
droSim2	x:1004635-1004947 -		ACGTATTTGCCCGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTAAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCCGGCATTTGCCGCT
droSec2	scaffold_10:949498-949807 -		ACGTATTTGCCGGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAG----------AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTAAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCGGGCATTTGCCGCT
droYak3	X:1030064-1030376 -		ACGTATTTGCCGGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAACAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCGGTTCAAACCTCCAACGCGGGCATCTGCCGCT
droEre2	scaffold_4644:1100570-1100879 -		ACGTATTTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAG----------AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCTTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCGGCAATTTGCCGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TCGTATCTGCCCGGCCCC--AACAACGGCAAATATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACGTATGCAGGCAATAGCAACAACACGC----AGCACAGCAGCAACATCAGCCAG---C---------------------------------------------------------AGCAACAGCAACAGCAA-----CAGCAGCTGCA------------GCAGCAGC------------------AG------------------------------CA--------GCAGCACCA----------------------------------------------------------TCA--CAG-----------------------------------------------------CAGCAGCAACACATTGAAGAACATATTCGCATCGGCCACGCTGCCCCGCTCCACGGGCAGCTCCATACGCTCCGTGCTGTCCGCGCAGACGGCCAACGC---CATCTGCAAGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................CTACTGAGATTCGCTTGCCT-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACACATTGAAGAACATATT......................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................ACTGAGATTCGCTTGCCT-----GCAGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
..............................................................................................CTACTGAGATTCGCTTGCCT-----GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droVir3

TCGTATCTGCCCGGGCCA--AACAATGGCAAATACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACGTATGCAGGCAATAGCAACAACACGC----AGCACAGCAGCAACATCAATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGCAGCAGCTGCAGCAGCAACAACAACAACACCAC----------------CACAGC-----AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCAACACACTGAAGAACATATTCGCATCGGCAACGCTGCCCCGCTCCACGGGCAGCTCCATACGCTCCGTGCTGTCCGCCCAGACGGCCAATGC---CATTTGCAAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................CGAACGACTTCTACTGAGATTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCAACACACTGAA...............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCATACGCTCCGTGCT...................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCACGGGCAGCTCCATACGCTC.........................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATATTCGCATCGGCAA...........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGCATCGGCAACGCTGC.....................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATCGGCAACGCTGCCCC..................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GACGCTCAGCAA---------------GCAGTGTAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATGGCAAATACGCGACGCTCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGTGTAAGACGCTCGAATCGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACGC----AGCACAGCAGCAACATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACACCAC----------------.............................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCAGCAGCTGCAGCAGCAACAA.........................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ACCAC----------------CACAGC-----AGCAGCAGC.........................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................CCAC----------------CACAGC-----AGCAGCAGC.........................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAACACC...............................................................................................................................................................................................................................................................................	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACACCA..............................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGCAGC------------------------------------------------------AGCAAC-----------------AGCA.......................................................................................................................................................................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................................................AATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------...........................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AC-----------------AGCAGCAG---------------CAACAGCA............................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AC-----------------AGCAGCAG---------------CAACAGCAGC..........................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................CAACAGCAGCAGCTGCAGCAGCA.............................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCAGCAGCTGCAGCAGCAACA..........................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------C...................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACAGCAGCAGCTGCAGCAGCA.............................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CAC----------------CACAGC-----AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------............................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------AGCAGCA....................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................ATCAGCAGCAGC------------------------------------------------------AGCAAC-----------------A..........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGCAGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGC.............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAAC................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGCA............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAAC................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C----------------CACAGC-----AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCAA........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CACAGC-----AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCA.........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAACAACAA...................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGCAGCA.........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAGCA............................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAAC-----------------AGCAGCAG---------------CAACAGCAGCA.........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGC------------------------------------------------------AGCAAC-----------------AGCAGCAG---------------CAACAG..............................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA----------------------------------------------------------------------------------------------------------------------------GCAACACA....................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAAC..................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TCGTATTTGCCTGGCCCG--AACAATGGCAAATACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAACACGTATGCAGGCAATAGCAACAACAC------GCAACAGCAACAGCAGCA----G---CAGCAACAACAACAGCAACAGCAACAA-----------------------------------------------------CAACAGCAGCA---ACA------ACA---AC------------------AG------------CAGCTACTGCAGCATCAACAGCAG-----C---AACAACAAATGCAGCAACAACAAATGCAGCAA-CAGAAAC---------------------AAT----TACAGCAAC---------------AGCAGCA------ACACCAC---------AGCAGCAGCACCACACTGAAAAACATTTTCGCATCGGCCACGCTGCCCCGCTCAACGGGCAGCTCCATACGTTCCGTGCTGTCCGCCCAGACGGCTAACGCG---ATGTGCAAGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................AATGGCAAATACGCGACGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
................................................................................GAATCGAACGACTTTTACTGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AAT----TACAGCAAC---------------AGCAGCA------ACA................................................................................................................................	23	1	1.00	1	1	0
.........................TGGCAAATACGCGACGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................GCAGCATCAACAGCAG-----C---AACAACA.....................................................................................................................................................................................................................................	24	2	0.50	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACACCAC---------AGCAGCAGCA.........................................................................................................	19	4	0.25	1	1	0
..................................................................................................................................................................GCAACAGCAGCA----G---CAGCAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0
.........................................................................................................................................................................CAGCA----G---CAGCAACAACAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1

droWil2

TCGTATTTGCCAGGACCT--AATAATGGCAAATATGCGACATTGAGCAA---------------ACAGTGTAAGACGCTCGAATCGAATGATTTCTACTGAGATTCGCTTGCCT-----GCAGCACATATGCAGGCAATAGCAACAACAC------AGCACAGCAACAGCAGCA----G---CAAC------------------------------------------------------AGCAAC-----------AGCAACCG------CA------------TCAACAAC------------------AACAACAACATCAA------------C---AACAACA--------GCATCA-------------------------------GTTGCCGCTGGGTGGCAACATC----ATACACCCAAATCAAA---------GCCAGAGTCAGAA------T------------------------AGTACGCTTAAGAATATATTCGCTTCAGCCACACTGCCCCGCTCAACGGGCAGCTCCATACGATCCGTGCTCTCGGCCCAAACGTCCAATGCA---ATGTGCAAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTGCCCCGCTCAACG..........................................................	19	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACATC----ATACACCCAAATCAAA---------GCC...................................................................................................................................................	24	1	2.00	2	0	0	0	0	2
.............................................................................................TCTACTGAGATTCGCTTGCCT-----GCAGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................AAC------------------------------------------------------AGCAAC-----------AGCAACCG------CA------------TC...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................TTTCTACTGAGATTCGCTTGCCT-----GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACGATCCGTGCTCTCGGCC............................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCTCTCGGCCCAAACGTC....................	21	1	1.00	1	0	0	0	1	0
...............................................................................................TACTGAGATTCGCTTGCCT-----GCAGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCATACGATCCGTGCT...................................	18	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGCTTAAGAATATATTCGCTTC................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................A--------GCATCA-------------------------------GTTGCCGCTGG..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....................................................................................CGAATGATTTCTACTGAGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCCGTGCTCTCGGCC............................	21	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................CAACCG------CA------------TCAACAAC------------------AAC........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................CAAC------------------AACAACAACATCAA------------C---AACAAC.......................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................CAGCAGCA----G---CAAC------------------------------------------------------AGCAAC-----------A................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0

dp5

TCGTATATGCAGGGGCCG--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAGCACCTATGCAGGCAATAGCAACAACAC------AGCCCAGCAGCAACAGCA----G---CAGCTCCAACTGCAGCTCCAGCAGCTTCAGCAGGCGCCGTCGCAGCCTCCACTCCAGCAGCAGC--------------------------AGCATCCCCA---T------C------------------AG------------------------------CAGCAGAGCAGCAACATCA------------------------TCAATCAG---------------------CAGCACC----AGCACCAAC---------------ATCAGCA------TCAGAA------------CAGCAGCAGCACCTTGAAGAACATATTCGCTTCGGCGACCCTGCCCCGTTCCACGGGCAGCTCCATCCGCTCCGTGCTCTCCGCACAGACGGCCAACGC---CATGTGCAGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................GTCGCAGCCTCCACTCCAGC..................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAA------------CAGCAGCAGCACCTTG.................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................C------------------AG------------------------------CAGCAGAGCAGCAACATCA------------------------TCAATC..........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCAGCAACAGCA----G---CAGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAGCAGCAGC--------------------------AGCATCCCC.........................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................CAGCAGCAACAGCA----G---CAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

TTGTCTCTGAAAGCGCCAACAACAACGACAACTGC---------AGCAACAGCCACAGCCACTGCCACTGCAACAAATGTGACGTCGACAAGTGCTGATAAAATGCAAATGCAAATGAAGCAACGCCAGCAGAAGCAGCAGCAGCAACAG-------------CAGCAG-------------AAA---------CAGCAGCAGCAGCAA-----------------------------------------------------CAGCAGCAACA---ACA------GCA---AC------------------AG------------CAGCAACAGCAGC---AACAGCAA--CAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAA-CAGCAAC---------------------AAC----AGCAACAGC---------------AGCAGCA------GCAGCAAGTTTTTGCTGTCAGCAGC---------------------------------------------------------------------------ATTAAAGTAAAAAGTGAAAACACAT-TAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------AAC----AGCAACAGC---------------AGCAGCA------GCA................................................................................................................................	25	15	0.07	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------AAC----AGCAACAGC---------------AGCAGCA------GCA................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AAC----AGCAACAGC---------------AGCAGCA------G..................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------AAC----AGCAACAGC---------------AGCAGC..........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAACA...................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droAna3

TCATACCTGCCGGGACCG--AACAACGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACAC------AGTCCAGCAGCAGCAACA----G---CAGC-----------------------------------------------------------------------AGCAGCTG------CA---GCA---GCAGCAGCAGC------------------AG------CAGCAG------------C---AGC--------AGCAACATCA---A--------------------TCAATCAG---------------------TCAGATCAATCAGCACC---------------------------------AG---------------------AGTTCTCTGAAGAACATATTCGCCTCGGCCACCCTGCCCCGTTCCACCGGCAGCTCCATCCGTTCCGTGCTCTCCGCCCAGACCTCGAATGCCGGGATCTGTCGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGGCAGCTCCATCCGTTCC........................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------AGTTCTCTGAAGAACATAT.......................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................GGCAGTAGCAGCAACAC------AGTCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCACC---------------------------------AG---------------------AGTTCTCTGAA...............................................................................................	23	1	1.00	1	0	0	0	0	0	1
..ATACCTGCCGGGACCG--AAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................AGCAGCAACA----G---CAGC-----------------------------------------------------------------------AGCAGC...........................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................................A---GCAGCAGCAGC------------------AG------CAGCAG------------C---AGC--------AGC...............................................................................................................................................................................................................................................	27	20	0.10	2	1	1	0	0	0	0
.......................................................................................................................................................................AGCAACA----G---CAGC-----------------------------------------------------------------------AGCAGCT..........................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................TG------CA---GCA---GCAGCAGCAGC------------------AG------CAGCAG------------C---.............................................................................................................................................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................A---GCA---GCAGCAGCAGC------------------AG------CAGCAG------------C---AGC--------..................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGCAGC------------------AG------CAGCAG------------C---AGC--------AGCAAC............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................GCAGCAACA----G---CAGC-----------------------------------------------------------------------AGCAGC...........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CAGCAGC------------------AG------CAGCAG------------C---AGC--------AGCAAC............................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0

droBip1

TCATACCTGCCAGGACCG--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAATCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGCACCCATGCAGGCAGTAGCAGCAACAC------AGTCCAGCAGCAGCAACA----G---CAGC------------------------------------------------------AGCAACAGCAGCAGCAA-----CAGCAGCAGCAGCAACTGCA---ACAGCAGC------------------AG------------------------------CAACAG--CAGCAACATCA---A--------------------TCAATCAG---------------------CCAGATCAATCAGCATC---------------------------------AG---------------------AGTTCTCTGAAGAACATATTCGCCTCGGCCACCCTGCCCCGTTCCACTGGCAGCTCCATACGCTCGGTACTCTCCGCCCAGACCTCGAATGCTGGGATATGTCGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCTATTTGCCGGGACCC--AACAATGGAAAATATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTTGAGTCGAACGACTTTTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---CAGC--------------------------------------------------------------------------AGTTGCACCTCCA------------GCAGCAGC------------------AG------CAGCAG------------C---AGCATAAC---AGCAGTCTTA----------------------------------------------------------TCAATCAGAATCAA------------------------------------------------------AGCACTTTAAAGAACATCTTTGCATCGGCCACACTGCCCCGCTCAACGGGTAGCTCCATACGGTCGGTGCTCTCGGCCCAGACTTCCAATGCCGGCATTTGTCGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGTACCTGCCGGGCCCC--AACAACGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTTGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA------------------------------------------------------------------------------------------------------------------TCAGC------------------AG------------------------------CAGCAA---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGATCCAGCAGAT------CCAGAGCCAGGGCCAG---------------------AGCACGCTGAAGAACATCTTTGCCTCGGCCACCCTGCCCCGCTCCACCGGCAGCTCCATTCGGTCGGTGCTCTCTGTCCAGACCTCCAACGCGGGCATCTGCCGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCGTATTTGCCGGGACCC--AACAATGGAAAGTATGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAACAACAC------AGCACAGCAGCAGCAGCA----------A------------------------------------------------------------T-----------TGCAGTTGCAACACCA------------GCAGCAGC------------------AA------CATCAG------------C---AACAGCAG---AGCAGCCTAA----------------------------------------------------------TCAATCAGAACCAGA------------------------------------------------------------TCAAGAACATCTTTGCATCGGCCACATTGCCACGCTCCACGGGCAGTTCCATTCGATCGGTGCTGTCGGTGCAGAACTCCAATGCTGGCATTTGTCGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTTATCTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---CAG-----------------------------------------------------------------------------TTGCAACTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------------TTCAGAG------TCAG---------------------AGCACGCTGAAGAACATCTTTGCATCGGCCACCTTGCCCCGCTCCACGGGCAGTTCCATCCGGTCGGTCCTCTCTGCCCAGACATCCAATGCTGGCATATGCCGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGTATCTGCCAGGACCG--AACAACGGAAAGTACGCCACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAATGACTTCTACTGAGATTCGCTTGCCT-----GCAGCTCCCATGCAGGCAGTAGCAGCAACACACAGCAAGCACAGCAGCAGCA-------------T-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------G------TCAGAGTCAGAGCCAG---------------------AGCACACTGAAGAACATCTTTGCATCGGCCACCTTGCCGCGCTCCACGGGCAGTTCCATCCGCTCGGTGCTCTCTGTCCAGACCTCCAATGCGGGCATTTGTCGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACATATCTGCCAGGACCA--AACAATGGAAAGTACGCGACGCTTAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCACCA----G---CAGC---------------------------------------------------------AAA-----------------TGCTGGTT---------------------C------------------AA------------------------------CAGCAG---AGCAGCCTTA----------------------------------------------------------TCAATCAGAACCAGG---------------TTCAGAG------TCAG---------------------AGCACGCTGAAGAACATTTTTGCATCGGCCACCTTGCCCCGCTCCACGGGCAGCTCCATCCGCTCGGTGCTTTCTGTCCAGACTTCCAATGCGGGCATTTGCCGCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACGTATCTACCGGGGCCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCGAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----------T-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAG------------------------------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAGA---------G------TCAGAG------TCAA---------------------AACACGCTAAAGAACATCTTCGCATCGGCCACCCTGCCCCGCTCTACGGGCAGTTCCATCCGGTCTGTGCTTTCTGTGCAGACCTCCAATGCGGGCATATGCCGCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACGTATTTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAAACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCACC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATTCGGTCCGTGCTCTCCGTTCAAACCTCCAATGCGGGCATTTGCCGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................ACGCGACGCTCAGCAA---------------GCAGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TACTGAGATTCGCTTGCCT-----GCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAAAACGCTCGAGTCCAACGACTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAAGTACGCGACGCTCAGCAA---------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................GCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGC................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAATGGAAAGTACGCGACGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AC------AGCACAGCAGCAGCAGCA----................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACGTATTTGCCCGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTAAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCCGGCATTTGCCGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCCGGTCGGTGCT...................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AG................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................GACGCTCAGCAA---------------GCAGTGTAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................C--AACAATGGAAAGTACGCGACGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCTCAGCAA---------------GCAGTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TCGAGTCCAACGACTTCTACTGAGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTTTGCGTCGGCC............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CTCCA------------GCAGCAGC------------------AG------------------------------CAGC.......................................................................................................................................................................................................................................................	19	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GCAGC------------------AG------------------------------CAGCAG---AGC...............................................................................................................................................................................................................................................	16	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACGTATTTGCCGGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAG----------AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAACCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTAAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCGGGCATTTGCCGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................TCCCATGCAGGCAGTAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCGGTCGGTGCTCTCCGT.............................	23	1	1.00	1	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAACCAAA---------G------------------CCAG---------------------AGCACGCT..................................................................................................	24	1	1.00	1	0	0	0	1

droYak3

ACGTATTTGCCGGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAACAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCCTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCGGTTCAAACCTCCAACGCGGGCATCTGCCGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................AATGGAAAGTACGCGACGCTCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AATGGAAAGTACGCGACGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGCAGC------------------AG------------------------------CAACAG---AGCAGCCTCA----------------------------------------------------------TC............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................GGAAAGTACGCGACGCTCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................GCAA---------------GCAGTGTAAGACGCTCGAGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AATGGAAAGTACGCGACGCTCAGCAA---------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGC------------------AG------------------------------CAACAG---AGCAGCCTCA----------------------------------------------------------TCA...........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ACAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAAC...................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................AGCAGCA----G---AAC-----------------------------------------------------------------------------TTGCAGCT....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------G------------------CCAG---------------------AGCACGCTGAAG..............................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................ATGGAAAGTACGCGACGCTCAGCAA---------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ACGTATTTGCCAGGACCC--AACAATGGAAAGTACGCGACGCTCAGCAA---------------GCAGTGTAAGACGCTCGAGTCCAACGACTTCTACTGAGATTCGCTTGCCT-----GCAGTTCCCATGCAGGCAGTAGCAGCAACAC------AGCACAGCAGCAGCAG----------AAC-----------------------------------------------------------------------------TTGCAGCTCCA------------GCAGCAGC------------------AG------------------------------CAGCAG---AGCAGCCTCA----------------------------------------------------------TCAATCAGAACCAAA---------G------------------CCAG---------------------AGCACGCTGAAGAACATCTTTGCGTCGGCCACCTTGCCCCGCTCGACGGGCAGCTCCATCCGGTCGGTGCTCTCCGTTCAAACCTCCAATGCGGCAATTTGCCGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.CGTATTTGCCAGGACCC--AACAATGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAG---AGCAGCCTCA----------------------------------------------------------TCAATCA.......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................CGCTCGAGTCCAACGACTTCTACTGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
........................ATGGAAAGTACGCGACGCTCAGCAA---------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCGACGGGCAGCTCCATCCGGTCGGT......................................	30	1	1.00	1	0	0	1	0	0	0	0
...........................................CAGCAA---------------GCAGTGTAAGACGCTCGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................TACGCGACGCTCAGCAA---------------GCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................AATGGAAAGTACGCGACGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCCACCTTGCCCCGCTC..............................................................	21	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................T-----GCAGTTCCCATGCAGGCAGTAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................CAC------AGCACAGCAGCAGCAG----------............................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................AGC------------------AG------------------------------CAGCAG---AGCAGCCTA.........................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................GCTCCA------------GCAGCAGC------------------AG------------------------------CAGC.......................................................................................................................................................................................................................................................	20	7	0.14	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGCAGC------------------AG------------------------------CAGCAG---AGCA..............................................................................................................................................................................................................................................	18	9	0.11	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................A------------GCAGCAGC------------------AG------------------------------CAGCAG---AG................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................CTCCA------------GCAGCAGC------------------AG------------------------------CAG........................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dmo_586

scaffold_6359:3775880-3776098 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.4	-36.1	-36.0