dmo_582

intron [Dmoj\GI21481-in]; CDS [Dmoj\GI21481-cds]; exon [dmoj_GLEANR_6487:2]; CDS [Dmoj\GI21481-cds]; exon [dmoj_GLEANR_6487:3]

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-

##################################################------------------------------------------################################################## ACAATTGCCAGGCGGCGGCGAGCAGGACAGCGACGGAGCCCTTGGACATTGTGGGCGGTGTGGCGGGTCAGCAACAGCAACAGCAGCAGCAGCAGCATAGCGCCAGCTGCAGCACCACCTCCTGCAGCCCGAGCAGCGAGAG ************************************************....((..(((.((..((..((....)).)).)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	V056 head	V110 male body
....................................................................................................CGCCAGCTGCAGCACCAC........................	18	0	1	1.00	1	0	1	0	0
.......................................................................................................CAGCTGCAGCACCACCTCCTGCAG...............	24	0	1	1.00	1	1	0	0	0
..................................................GTGGGCGGTATTGCGGGTCTG.......................................................................	21	3	2	0.50	1	0	0	1	0
............CGGCGGCGCGCAGGACAT................................................................................................................	18	2	7	0.14	1	1	0	0	0
..........................................TGAACACTGCGGGCGGTGT.................................................................................	19	3	13	0.08	1	0	0	1	0
..................................................GTGGGCGGTGTGGTGCGT..........................................................................	18	2	16	0.06	1	0	0	0	1

TGTTAACGGTCCGCCGCCGCTCGTCCTGTCGCTGCCTCGGGAACCTGTAACACCCGCCACACCGCCCAGTCGTTGTCGTTGTCGTCGTCGTCGTCGTATCGCGGTCGACGTCGTGGTGGAGGACGTCGGGCTCGTCGCTCTC ************************************************....((..(((.((..((..((....)).)).)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V049 head	V110 male body
.......................................................GCCACACGGTCCAGTCGTTGA..................................................................	21	3	4	0.25	1	1	0	0	0
........................................................................................................TCGACGTGGTGGTGAAGGAT..................	20	3	12	0.08	1	0	1	0	0
....................................................................................................................TGGAGGGCGTCGGGTTCG........	18	2	13	0.08	1	0	0	1	0
...............................CGTCCTTGGGAACCTGTAA............................................................................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6359:3411509-3411650 -	dmo_582	ACAATT-G------C-------------------------------------------------------CAGGCGGCGGCGAGCAGGACAGCGACG-----------------------GAGCCCT----------------------------------------------------------------------TGGAC------------------------------ATTGTGGGCGGTG---TGGCGGG-------TC-----------------AGCAACA---GCAACAG-------------CAGCAGCAG---CAGCA-TAGCGC---------CAGCTGCAGCACCACCTCCT---GCAG-CCCG-------------------------AGCAGCGAGAG
droVir3	scaffold_12472:214157-214286 -		ACGATT-G------T-------------------------------------------------------CAGGCAT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------GC--------------ACAGCG-CCGCTGGACATAGTCGGCGGTGGCACA---------------------GCTGGCCAGGCAC-----------------------------------------ATGGCAGCGC---------CAGCTGCAGCACCACATCCT---GCAG-CCTA-------------------------AGCAGCGACAG
droGri2	scaffold_3013:3925-4063 -		GCAGCA-G------C---------------------------------------GGCAGCAGC---AG----------------------------------CAGC------A----------------------------------------------GCAGCAGCAGCAGCGGCA--GCAGCAGC-AGCAGCAGCAG-------------------------------CAGCAG--------------------------C-------A--------GCAGC---AGCAGCAGCAG-------------------CAG---CATCAGCAGCGG---------CAGCAGCAGCAGCAGCGGCA---GCAG-CAGC-------------------------AGCAGCAGCGG
droWil2	scf2_1100000004909:9410899-9411019 +		GGTGGCGG------C---------------------------------------G---GCAGC---AG----------------------------------CGGT-----G--------GAGCTGG----------------------------------------------------------------------TGGAC--------------TT-----------------GG---CACCGG-------AG-------C-----------------GGGTAACA---GCAGTAG-------------CAGCAGTGG---TGGCG-TCGTAT---------CATCTAGTGCAGCAGCTGCC---GCGG-CTGC-------------------------AGCAGCGGCCG
dp5	XR_group6:6489917-6490050 +		ACAGCA-G------C---------------------------------------ACCAGCAGC---AA----------------------------------TAGC------A----------------------------------------------GCAGCAGCGGCGGCGCCA--ACAATAGC-AGCAGTGGCAG-------------------------------CAACAA--------------------------T--------------------C---AACAGCAGCAG-------------------CAG---CAACAACAACAA---------CAGCAGCAACAACAACAACA---ACAA-CAGC-------------------------AGCAGCAACAA
droPer2	scaffold_17:857824-857945 +		CAGTGG-G------C----------------------------------------------------------------------GGGACACCGCCCTCA-ACGC------------------------------------------------------------------------CATCGGTTCCCGGTG-------------------------------GTGCTGGAGGC-------------------GA-------TC-----------------AGCAA------CAGCAA-------------CAGCAG---------CAGCAGCAA---------CAGCACCAGCAGCAGCAGCA---ACAA-CAGC-------------------------AGCAGCAGCAG
droAna3	scaffold_3631:341-480 +		GCATCT-G------A---------------------------------------CCAAGCAGC---AGC----------------AGAACAGCA-------------T-----TCAGACGCAGCTAT----------------------------------------------------------------------CGCAGATT-------AGTG-------CTGCTGCAGTG-------------------CA-------TC-----------------ACCAACA---GCAGCAA-------------CAGCAGCAG---CAGCA------------------------ACAGCAA---CAGCAGC----AACAACAGC----------AGCAGGCTCAG--GCGCAAG
droBip1	scf7180000395654:245836-245959 +		TGCCAC-G------C---------------------------------------G------GC----------ACG-------------------------ACCTCGACCTGG---------------------------------------------------------------------------------------------------------------------------ACGCCGGCGGGATAGCTTC-------TC--------------AACAACAACA---GCAGCAG-------------CAGCAGCAG---CAGTTGCTCCAG---------GAGCAGCAGTACTATTACCA---ACAG-CAGC-------------------------AGCAGCAGCAG
droKik1	scf7180000302510:447371-447520 -		GCAAAT-C----AGG---------------------------------------CGACGCAGCAAG--C----------------GGGACAGCAGCAGCA-GCAG------------------------------------------------------------------------CAACAATTGCAAGCA---A------CACCCCAACA----GCAGCAA-------TTA-----------------CAGAC-------TC-----------------------AGCAACAGCAG----------------CAGC---------AGCAGCAACA---------------------GCAGCC---ACAA-TTGC------AAGCAACACCCCAAC----AGCAGCAATTG
droFic1	scf7180000454045:1063172-1063316 -		GCGACG-G------C---------------------------------------CAAGGAAGCGAT--CCTGGTCG-------------CATCGCCCATA-CTAC------------------------------------------------------------------------GAGCAACTGCGAGA----G------CGT-------CGCG-------ATGCCGAGGAG----------------------------------------------AAGCAACA---GCAACAG-------------CAGCAGCAG---CAGC------AACA---CCAGC------ATCATCAGCAACA---CCAG-CAGC-------------------------AACATCAGCAG
droEle1	scf7180000491028:2061638-2061759 +		GCAATT-G------C---------------------------------------TGCAGCAGC---AG----------------------------------CAACAA-----GCGGCCGCAGCCGT----------------------------------------------------------------------TGCAG-------------------------------TTGTTAACAGCG------------------------------------TGC---AGCAGCAGCAA-------------CAGCAA------------CAGCAG---------CAGCAGCAACAGCAG---CAACAGC----ATCAGCAAC-------------------AGCAG--GCCG
droRho1	scf7180000779522:8042-8178 -		ACAACG-G------C---------------------------------------GACAGGGGC---C------------------AGGCAATCGGCCAAA-----------------------CTGT--------------------------------------------------CAGACATTGT--------------------------------------------------GCGTTGTG---TGCCAAA------------------------AGAGCAACC---GCAAGAG-------------CAACAGCAA---CAGCAAATGCAA---------CATCAACAGCAACAGCAACT---GCAA-CA-C-------------------------AACAGCAACAG
droBia1	scf7180000302126:3508353-3508492 +		ACTACT-G------G-------------------------------------------------------GAGGCGCCG---------------CCCACCAGGGCC-----A------------------GCTTGCTGCTCCACTCGCCCACGGAGTAC------------------TC---------------------------------------------------TGA----------------------------------------------GGAGCAACA---GCAGCAG-------------CAGCAGCAA---CAGCAACAGCAA---------CAGCAGCAGCAACAGCAGCA---GCAA-CAGC-------------------------AGCAGCAACAG
droTak1	scf7180000415352:88338-88468 -		ATGGTT-C------C-------------------------------------------------------GAGACGCAG------------------AGCGAGGAC-----A------------------ACAAGATGATGC--------------------------------ATA--CCTCCAGC-A---------------------------GCAGCAA-------TCA----------------------------------------------GTTGCAGCA---GCAACAT-------------CAGCAGC---------AGCAGCAACA---GCAGC------AGCAGCAGCAACT---CCTG-CAGC-------------------------AGCATCAACAG
droEug1	scf7180000409759:863256-863413 -		GAGCG--GCCTTAGGCGGAGGCGGAAGCGGTGCGG---CGGTGGCCACGGCTCC------------------------------------------------------------C---------------------------------------------------------------------AGT-A---------------------------GCAGTG-CCGCGAG---------GCGGGG---AGCCAGG-------GCTGCCACAACAGCC------------------CAG-------------CAGCAGCAG---CAACAACAGCAG---------CAACAGCAACAACGCTACCA---GCAA-CAGC-------------------------AGCAGCAGCAG
dm3	chr3R:26187009-26187156 +		GCCCTC-G------T-TGAGTCCGACGGCCAGCAGCAATGGCAACGATGGCTCC------------------------------------------------------------AAG----------ATGA--------------------------------T--------------------------------------------------------------------GTTGTGGGCGGCC---CA--AAG-------TTCGCC-------------ACAAAAT---GCTGCAACACTCAGGGATGGATT---------C--------------------AAGGAGTTGCAGCGCCAGCA---GCCA-CCGC-------------------------AGCAGCAGGTG
droSim2	3r:9980247-9980397 +		ACAACA-A------C---------------------------------------CACAGCCAC---GC----------------------------------CCAG------G--------------ACAA--------------------------------CATTATGGAGCCCA--TTATTACG-ACCA--------------------------------------------------TTG---TGCCACAGACGCCGCC-------ACCATCCACGCAC---AACAACAACAA-------------CTT---------CAAGA---TCCG------CCTGGTGGAGAGCCATCACCTGA---CCAA-CAAC-------------------------AACAACCAGAA
droSec2	scaffold_35:144142-144270 +		GCGCCC-A------G-C-------------------------------------A---GCAGC---CG------------------------------CA-GCCACATCCTGG----------------------------------------------------------------------------------------C--------------CT-----------------GC---CGCCGG--------G-------CG---CCC--------AACAGCAATC---TCAGCAA-------------CAGCAGCAGCAGCAACAACAGCAG---------CAGCAGCAACAACAACAACA---GCAGGCAGC-------------------------AGCAGCGGCGG
droYak3	X:19161272-19161386 +		GGAAGT-G------C---------------------------------------A-----------------GGCGG------------------CCAG---GGAC-----AACC-ACCTCAGCCA------------------------------------------------------------------------------------------------C-------T-----------------TGGCGGG-------TC-----------------AGCA------GCAGCAA-------------CAGCAG------------CAGCAGCAGCAGCAGC---------AGAGG---AA---GCGA-CA----------------CGTTTACGGCGAGGAGCGGGAA
droEre2	scaffold_4845:15922825-15922973 -		AGAACA-A------G-------------------------------------------------------CGGGCGG------------------CCAAGAAGACC-----G------------------ACAAGAAGCTGCCCGATCCCTCGCAGCAG------------------CATCAGCAGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCATCAG-------------CAGCAGCAG---CAGCATCAGCAG---------CAGCAGCAGCAGCATCAGCA---GCAG-CATC-------------------------AGCAGCAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACAATT-G------C-------------------------------------------------------CAGGCGGCGGCGAGCAGGACAGCGACG-----------------------GAGCCCT----------------------------------------------------------------------TGGAC------------------------------ATTGTGGGCGGTG---TGGCGGG-------TC-----------------AGCAACA---GCAACAG-------------CAGCAGCAG---CAGCA-TAGCGC---------CAGCTGCAGCACCACCTCCT---GCAG-CCCG-------------------------AGCAGCGAGAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................CGC---------CAGCTGCAGCACCAC.....................................................	18	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCACCACCTCCT---GCAG-........................................	24	1	1.00	1	1	0	0	0	0	0

droVir3

ACGATT-G------T-------------------------------------------------------CAGGCAT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------GC--------------ACAGCG-CCGCTGGACATAGTCGGCGGTGGCACA---------------------GCTGGCCAGGCAC-----------------------------------------ATGGCAGCGC---------CAGCTGCAGCACCACATCCT---GCAG-CCTA-------------------------AGCAGCGACAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................C-----------------------------------------ATGGCAGCGC---------CAGCTGCAGCAC........................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
...........................................................................AT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------GC--------------....................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................C--------------ACAGCG-CCGCTGGACATAGTCGGC...........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T-G------T-------------------------------------------------------CAGGCAT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CG.........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CAT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------GC--------------ACAGCG-C............................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................AT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------G...................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................C-----------------------------------------ATGGCAGCGC---------CAGCTGCAGCAA........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................A-----------------------------------------------------CGACGA-----------------GC--------------ACAGCG-CCGCTG.......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CAT---------------C----AA---CGGC-----G--------ACAA-----------------------------------------------------CGACGA-----------------....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCAGCA-G------C---------------------------------------GGCAGCAGC---AG----------------------------------CAGC------A----------------------------------------------GCAGCAGCAGCAGCGGCA--GCAGCAGC-AGCAGCAGCAG-------------------------------CAGCAG--------------------------C-------A--------GCAGC---AGCAGCAGCAG-------------------CAG---CATCAGCAGCGG---------CAGCAGCAGCAGCAGCGGCA---GCAG-CAGC-------------------------AGCAGCAGCGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................CAGC---AGCAGCAGCAG-------------------CAG---C........................................................................................	19	20	0.25	5	5	0
...............................................................................................................................................................................................AGCAGCAG-------------------------------CAGCAG--------------------------C-------A--------GCAGC---AGCA.........................................................................................................................	25	20	0.10	2	2	0
........................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCGGCA---.............................................	20	20	0.05	1	0	1

droWil2

GGTGGCGG------C---------------------------------------G---GCAGC---AG----------------------------------CGGT-----G--------GAGCTGG----------------------------------------------------------------------TGGAC--------------TT-----------------GG---CACCGG-------AG-------C-----------------GGGTAACA---GCAGTAG-------------CAGCAGTGG---TGGCG-TCGTAT---------CATCTAGTGCAGCAGCTGCC---GCGG-CTGC-------------------------AGCAGCGGCCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................ACCGG-------AG-------C-----------------GGGTAACA---GCAGTAG-------------CAGCA................................................................................................	28	1	2.00	2	0	0	2	0	0
....................................................................................................................................................................................................................................................GG-------AG-------C-----------------GGGTAACA---GCAGTAG-------------CAGCA................................................................................................	25	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................G-------C-----------------GGGTAACA---GCAGTAG-------------CAGC.................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................A---GCAGTAG-------------CAGCAGTGG---TGGCG-...................................................................................	22	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................AACA---GCAGTAG-------------CAGCAGTGG---TGGCG-TC.................................................................................	27	1	1.00	1	0	0	0	1	0
....GCGG------C---------------------------------------G---GCAGC---AG----------------------------------CGGT-----G--------GAGCTGG----------------------------------------------------------------------TG.....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................GTAT---------CATCTAGTGCAGCAGCT...................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................GGAC--------------TT-----------------GG---CACCGG-------AG-------C-----------------GGG.................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................T-----G--------GAGCTGG----------------------------------------------------------------------TGGAC--------------TT-----------------GG---CACC........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0

dp5

ACAGCA-G------C---------------------------------------ACCAGCAGC---AA----------------------------------TAGC------A----------------------------------------------GCAGCAGCGGCGGCGCCA--ACAATAGC-AGCAGTGGCAG-------------------------------CAACAA--------------------------T--------------------C---AACAGCAGCAG-------------------CAG---CAACAACAACAA---------CAGCAGCAACAACAACAACA---ACAA-CAGC-------------------------AGCAGCAACAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................GC------A----------------------------------------------GCAGCAGCGGCGGCGCCA--ACAATA...................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAGC-AGCAGTGGCAG-------------------------------CAACA.................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................C------A----------------------------------------------GCAGCAGCGGCGGCGCCA--ACA......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................C---AA----------------------------------TAGC------A----------------------------------------------GCAGCAGCGGCGGC...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................AA----------------------------------TAGC------A----------------------------------------------GCAGCAGCGGCGGCGC.............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................GC------A----------------------------------------------GCAGCAGCGGCGGCGCCA--.........................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G-------------------CAG---CAACAACAACAA---------CAGCAGCAAC..........................................................	26	6	0.17	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AACAACAACA---ACAA-CAGC-------------------------AGC........	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACA---ACAA-CAGC-------------------------AGC........	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AACAA---------CAGCAGCAACAACAACA...................................................	22	20	0.10	2	0	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCAGCAG-------------------CAG---CAACAACAACAA---------C...................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G-------------------CAG---CAACAACAACAA---------CAGC................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAACAACAA---------CAGCAGCAACAAC.......................................................	22	20	0.10	2	0	0	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAACAACAA---------CAGCAGCAACAACA......................................................	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0
........................................................CAGCAGC---AA----------------------------------TAGC------A----------------------------------------------GCAGCA.......................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACAGCAGCAG-------------------CAG---CAACAACAACAA---------C...................................................................	26	14	0.07	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AA---------CAGCAGCAACAACAACAACA---ACA..........................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CAA---------CAGCAGCAACAACAACAACA---A............................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AG-------------------CAG---CAACAACAACAA---------CAGC................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAG---CAACAACAACAA---------CAGCA...............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................AGC---AA----------------------------------TAGC------A----------------------------------------------GCAGCAGC.....................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAACAA---------CAGCAGCAACAACAACA...................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAACAACA---ACAA-CAGC-------------------------AGCAGC.....	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAACAACAACAA---------CAGCAGCA............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAGCAG-------------------CAG---CAACAACAACA..............................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACA---ACAA-CA......................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................AGC------A----------------------------------------------GCAGCAGCGGCGGC...............................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ACAACAACAA---------CAGCAGCAACA.........................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CAGCAGCAG-------------------CAG---CAACAACAACAA---------....................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAG-------------------CAG---CAACAACAACAA---------CAGCAGCA............................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CA---ACAA-CAGC-------------------------AGCAGCAAC..	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACA---ACAA-CAGC-------------------------AGC........	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAACA---ACAA-CAGC-------------------------AGCAGCAACA.	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AG---CAACAACAACAA---------CAGCAGCA............................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................C---AACAGCAGCAG-------------------CAG---CAACA....................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAACAA---------CAGCAGCAACAAC.......................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACAACA---ACAA-CAGC-------------------------AGCAGCA....	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................A--------------------------T--------------------C---AACAGCAGCAG-------------------CAG---CA.......................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

CAGTGG-G------C----------------------------------------------------------------------GGGACACCGCCCTCA-ACGC------------------------------------------------------------------------CATCGGTTCCCGGTG-------------------------------GTGCTGGAGGC-------------------GA-------TC-----------------AGCAA------CAGCAA-------------CAGCAG---------CAGCAGCAA---------CAGCACCAGCAGCAGCAGCA---ACAA-CAGC-------------------------AGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................GGTTCCCGGTG-------------------------------GTGCTGGA.....................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................ATCGGTTCCCGGTG-------------------------------GTGCTGGAGGC-------------------...............................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GGTTCCCGGTG-------------------------------GTGCTGGAGGC-------------------...............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAG---------CAGCAGCA..............................................................................	19	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAG---------CAGCAGCAA---------CAGCA...............................................................	25	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGCA---ACAA-CAGC-------------------------AGCAGCAGC..	21	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................CAA------CAGCAA-------------CAGCAG---------CAGCA.................................................................................	20	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---ACAA-CAGC-------------------------AGCA.......	24	20	0.05	1	0	0	1	0	0	0

droAna3

GCATCT-G------A---------------------------------------CCAAGCAGC---AGC----------------AGAACAGCA-------------T-----TCAGACGCAGCTAT----------------------------------------------------------------------CGCAGATT-------AGTG-------CTGCTGCAGTG-------------------CA-------TC-----------------ACCAACA---GCAGCAA-------------CAGCAGCAG---CAGCA------------------------ACAGCAA---CAGCAGC----AACAACAGC----------AGCAGGCTCAG--GCGCAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................AGCAGC----AACAACAGC----------AGCAGGC.............	22	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GCAGC----AACAACAGC----------AGCAGG..............	20	8	0.13	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................AGC----AACAACAGC----------AGCAGG..............	18	9	0.11	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................CAGC----AACAACAGC----------AGCAGG..............	19	9	0.11	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AG---CAGCA------------------------ACAGCAA---CAGCA.............................................	19	20	0.10	2	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................GCAA-------------CAGCAGCAG---CAGCA------------------------ACAGCA......................................................	24	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAA-------------CAGCAGCAG---CAGCA------------------------ACAGCAA---C.................................................	26	20	0.10	2	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................CAGCAA-------------CAGCAGCAG---CAGCA------------------------ACA.........................................................	23	20	0.10	2	0	0	0	1	0	1
........................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAGCA------------------------ACAGCAA---CA................................................	22	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGCA------------------------ACAGCAA---CAGCAGC----AAC....................................	21	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAGCAG---CAGC.....................................................................................	18	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CAGCAG---CAGCA------------------------ACAGCAA---CAGC..............................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACAGCAA---CAGCAGC----AACAAC.................................	20	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGCAG---CAGCA------------------------ACAGCAA---C.................................................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAGCAG---CAGCA------------------------............................................................	19	20	0.05	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAGCAG---CAGCA------------------------ACAGC.......................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAGCAG---CAGCA------------------------ACAGCA......................................................	25	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................CA---GCAGCAA-------------CAGCAGCAG---CA.......................................................................................	20	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AG---CAGCA------------------------ACAGCAA---CAGCAGC----.......................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAA---CAGCAGC----AACAACAGC----------AGCA................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................A------------------------ACAGCAA---CAGCAGC----AACA...................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAGCA------------------------ACAGCAA---CAGCAGC----.......................................	27	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAGCA------------------------ACAGCA......................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................AA-------------CAGCAGCAG---CAGCA------------------------ACAGCA......................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AGCAA---CAGCAGC----AACAACAGC----------....................	21	20	0.05	1	0	1	0	0	0	0

droBip1

TGCCAC-G------C---------------------------------------G------GC----------ACG-------------------------ACCTCGACCTGG---------------------------------------------------------------------------------------------------------------------------ACGCCGGCGGGATAGCTTC-------TC--------------AACAACAACA---GCAGCAG-------------CAGCAGCAG---CAGTTGCTCCAG---------GAGCAGCAGTACTATTACCA---ACAG-CAGC-------------------------AGCAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAAAT-C----AGG---------------------------------------CGACGCAGCAAG--C----------------GGGACAGCAGCAGCA-GCAG------------------------------------------------------------------------CAACAATTGCAAGCA---A------CACCCCAACA----GCAGCAA-------TTA-----------------CAGAC-------TC-----------------------AGCAACAGCAG----------------CAGC---------AGCAGCAACA---------------------GCAGCC---ACAA-TTGC------AAGCAACACCCCAAC----AGCAGCAATTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGACG-G------C---------------------------------------CAAGGAAGCGAT--CCTGGTCG-------------CATCGCCCATA-CTAC------------------------------------------------------------------------GAGCAACTGCGAGA----G------CGT-------CGCG-------ATGCCGAGGAG----------------------------------------------AAGCAACA---GCAACAG-------------CAGCAGCAG---CAGC------AACA---CCAGC------ATCATCAGCAACA---CCAG-CAGC-------------------------AACATCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAATT-G------C---------------------------------------TGCAGCAGC---AG----------------------------------CAACAA-----GCGGCCGCAGCCGT----------------------------------------------------------------------TGCAG-------------------------------TTGTTAACAGCG------------------------------------TGC---AGCAGCAGCAA-------------CAGCAA------------CAGCAG---------CAGCAGCAACAGCAG---CAACAGC----ATCAGCAAC-------------------AGCAG--GCCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAACG-G------C---------------------------------------GACAGGGGC---C------------------AGGCAATCGGCCAAA-----------------------CTGT--------------------------------------------------CAGACATTGT--------------------------------------------------GCGTTGTG---TGCCAAA------------------------AGAGCAACC---GCAAGAG-------------CAACAGCAA---CAGCAAATGCAA---------CATCAACAGCAACAGCAACT---GCAA-CA-C-------------------------AACAGCAACAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTACT-G------G-------------------------------------------------------GAGGCGCCG---------------CCCACCAGGGCC-----A------------------GCTTGCTGCTCCACTCGCCCACGGAGTAC------------------TC---------------------------------------------------TGA----------------------------------------------GGAGCAACA---GCAGCAG-------------CAGCAGCAA---CAGCAACAGCAA---------CAGCAGCAGCAACAGCAGCA---GCAA-CAGC-------------------------AGCAGCAACAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGGTT-C------C-------------------------------------------------------GAGACGCAG------------------AGCGAGGAC-----A------------------ACAAGATGATGC--------------------------------ATA--CCTCCAGC-A---------------------------GCAGCAA-------TCA----------------------------------------------GTTGCAGCA---GCAACAT-------------CAGCAGC---------AGCAGCAACA---GCAGC------AGCAGCAGCAACT---CCTG-CAGC-------------------------AGCATCAACAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGCG--GCCTTAGGCGGAGGCGGAAGCGGTGCGG---CGGTGGCCACGGCTCC------------------------------------------------------------C---------------------------------------------------------------------AGT-A---------------------------GCAGTG-CCGCGAG---------GCGGGG---AGCCAGG-------GCTGCCACAACAGCC------------------CAG-------------CAGCAGCAG---CAACAACAGCAG---------CAACAGCAACAACGCTACCA---GCAA-CAGC-------------------------AGCAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCCCTC-G------T-TGAGTCCGACGGCCAGCAGCAATGGCAACGATGGCTCC------------------------------------------------------------AAG----------ATGA--------------------------------T--------------------------------------------------------------------GTTGTGGGCGGCC---CA--AAG-------TTCGCC-------------ACAAAAT---GCTGCAACACTCAGGGATGGATT---------C--------------------AAGGAGTTGCAGCGCCAGCA---GCCA-CCGC-------------------------AGCAGCAGGTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................T---GCTGCAACACTCAGGGATGGATT---------C--------------------AA..................................................................	27	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CGCC-------------ACAAAAT---GCTGCAACAC...............................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TT---------C--------------------AAGGAGTTGCAGCGCCAGCA---GC...........................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
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.................................................GCTCC------------------------------------------------------------AAG----------ATGA--------------------------------T--------------------------------------------------------------------GTTGTGGGC...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CACTCAGGGATGGATT---------C--------------------AAGGAGTTGCA.........................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GCA---GCCA-CCGC-------------------------AGCAGCA....	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGCA---GCCA-CCGC-------------------------AGCAGCA....	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACAACA-A------C---------------------------------------CACAGCCAC---GC----------------------------------CCAG------G--------------ACAA--------------------------------CATTATGGAGCCCA--TTATTACG-ACCA--------------------------------------------------TTG---TGCCACAGACGCCGCC-------ACCATCCACGCAC---AACAACAACAA-------------CTT---------CAAGA---TCCG------CCTGGTGGAGAGCCATCACCTGA---CCAA-CAAC-------------------------AACAACCAGAA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GCGCCC-A------G-C-------------------------------------A---GCAGC---CG------------------------------CA-GCCACATCCTGG----------------------------------------------------------------------------------------C--------------CT-----------------GC---CGCCGG--------G-------CG---CCC--------AACAGCAATC---TCAGCAA-------------CAGCAGCAGCAGCAACAACAGCAG---------CAGCAGCAACAACAACAACA---GCAGGCAGC-------------------------AGCAGCGGCGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAG---------CAGCAG..............................................................	21	20	0.20	4	0	0	4	0
................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAG---------CAG.................................................................	18	20	0.10	2	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................CAACAACAGCAG---------CAGCAGC.............................................................	19	20	0.10	2	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAG---------CAGCAG..............................................................	20	20	0.10	2	0	1	1	0
.............................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAGCAG---------....................................................................	18	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGC...............................................................................	21	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCA..............................................................................	19	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAG---------CAGCAGC.............................................................	20	20	0.05	1	0	0	0	1

droYak3

GGAAGT-G------C---------------------------------------A-----------------GGCGG------------------CCAG---GGAC-----AACC-ACCTCAGCCA------------------------------------------------------------------------------------------------C-------T-----------------TGGCGGG-------TC-----------------AGCA------GCAGCAA-------------CAGCAG------------CAGCAGCAGCAGCAGC---------AGAGG---AA---GCGA-CA----------------CGTTTACGGCGAGGAGCGGGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................GCAA-------------CAGCAG------------CAGCAGCAGCAGCA.....................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GCAGCAA-------------CAGCAG------------CAGCAGCAGCAGC......................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................A------GCAGCAA-------------CAGCAG------------CAGCAGCAGC.........................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAA-------------CAGCAG------------CAGCAGCAGC.........................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AA-------------CAGCAG------------CAGCAGCAGCAGC......................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAA-------------CAGCAG------------CAGCAGCAGCAGCA.....................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

AGAACA-A------G-------------------------------------------------------CGGGCGG------------------CCAAGAAGACC-----G------------------ACAAGAAGCTGCCCGATCCCTCGCAGCAG------------------CATCAGCAGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCATCAG-------------CAGCAGCAG---CAGCATCAGCAG---------CAGCAGCAGCAGCATCAGCA---GCAG-CATC-------------------------AGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................GG------------------CCAAGAAGACC-----G------------------ACAAGAAG..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................G---------CAGCAGCAGCAGCATCAGCA---.............................................	21	20	0.30	6	6	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AGCAG---------CAGCAGCAGCAGCATCAGCA---GCA..........................................	28	18	0.22	4	2	0	0	0	1	1	0
....................................................................................................................................................................................................................................................................................................CATCAG-------------CAGCAGCAG---CAGCATCAGC...............................................................................	25	5	0.20	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................GCAG---------CAGCAGCAGCAGCATCAGCA---GCA..........................................	27	19	0.16	3	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAGCAG---------CAGCAGCAGCAGCATCAGC.................................................	25	20	0.10	2	0	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................AGCAG---------CAGCAGCAGCAGCATCAGCA---.............................................	25	20	0.10	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................AGCAG---------CAGCAGCAGCAGCATC....................................................	21	20	0.10	2	2	0	0	0	0	0	0
....................................................................................................................................................................................CAGCAGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCA...............................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AGCA---GCATCAG-------------CAGCAGCA.............................................................................................	19	20	0.10	2	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................A---GCAG-CATC-------------------------AGCAGCAGCA.	19	20	0.10	2	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................AGCAG---------CAGCAGCAGCAGCATCAGC.................................................	24	20	0.10	2	2	0	0	0	0	0	0
..........................................................................................................................................................AGCAG------------------CATCAGCAGCAGCA-------------------------------------------------------------................................................................................................................................................................	19	20	0.10	2	1	0	0	0	0	1	0
...........................................................................................................................................................................................AGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCATCAG-------------C....................................................................................................	24	11	0.09	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCA---GCAG-CATC-------------------------AGC........	24	11	0.09	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATCAGCA---GCAG-CATC-------------------------AGCAGCA....	22	12	0.08	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................A-------TC-----------------AGCAGCA---GCATCAG-------------CAGCA................................................................................................	22	12	0.08	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................AG---------CAGCAGCAGCAGCATCAGCA---GCAG-C.......................................	27	17	0.06	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AG-------------CAGCAGCAG---CAGCATCAGCAG---------CAGC................................................................	27	17	0.06	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................AGCATCAGCA---GCAG-CATC-------------------------A..........	19	19	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................A-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCATCA...................................................................................................................	19	19	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................GCAG---------CAGCAGCAGCAGCATCAGCA---GC...........................................	26	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CA---GCATCAG-------------CAGCAGCAG---C........................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGCAG---CAGCATCAGCAG---------CAGC................................................................	25	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................G-------------CAGCAGCAG---CAGCATCAGCAG---------CAGC................................................................	26	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AG---------CAGCAGCAGCAGCATCAGCA---GCA..........................................	25	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCAGCA---GCAG-C.......................................	21	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................AGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GC.......................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................AGCAGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCA......................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................G---------CAGCAGCAGCAGCATCAGCA---GCAG-C.......................................	26	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................AGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---GCA......................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................CATCAGCAG---------CAGCAGCAGCAGC.......................................................	22	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................G---------CAGCAGCAGCAGCATCAGC.................................................	20	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................CAGCAGCAGCA-------------------------------------------------------------GCA-------TC-----------------AGCAGCA---G........................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCATCAGCA---GCAG-C.......................................	25	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAG---------CAGCAGC.............................................................	19	20	0.05	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................AGCAG---CAGCATCAGCAG---------CAGC................................................................	21	20	0.05	1	1	0	0	0	0	0	0

dmo_582

scaffold_6359:3411559-3411600 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads