ID:

dmo_569

 Coordinate:

scaffold_6359:3127251-3127401 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.79 -19.69 -19.69

Flybase annnotation

exon [dmoj_GLEANR_6731:3]; CDS [Dmoj\GI21747-cds]; intron [Dmoj\GI21747-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACACACACACACACACAAACACATTTCTATGAGCATTTCCTTACTTGTTTTTAATATACTATAAATATATTGAAAATATATTGACATATTGAACTTCCTTTTGTAAACCCGCAAAATGCAAAAAAAAAAAAATAACAAAACAAAAAAAATCATCAACAACAACAACAACAACTGTTGCACCATTTGCGGGGAACTTACAGGTGAACGACCCTTCAGATGCCACATGTGCGGAAAGACATTCTCACGCTCG
**************************************************((((((((......((((((((...))))))))...)))))))).......((((((.((((((((.(((((.....................................................)))))...))))))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
...................................................................................................................................................................................ACCATTTGCGGGGAACTTACAG.................................................. 22 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................TTCAGATGCCACATGTGCGGAAAGACA............ 27 0 1 1.00 1 0 1 0 0
..............................................................................................................................................................................................................CGACCCTTCAGATGCCACATGTGCGGA.................. 27 0 1 1.00 1 1 0 0 0
.................................................................................................................AAAAAGAAAAGAAAAAAAAATAACAAAACAAAAAAA...................................................................................................... 36 3 9 0.11 1 0 0 1 0
.....ACACACACACACAAACAC.................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

GTGTGTGTGTGTGTGTGTTTGTGTAAAGATACTCGTAAAGGAATGAACAAAAATTATATGATATTTATATAACTTTTATATAACTGTATAACTTGAAGGAAAACATTTGGGCGTTTTACGTTTTTTTTTTTTTATTGTTTTGTTTTTTTTAGTAGTTGTTGTTGTTGTTGTTGACAACGTGGTAAACGCCCCTTGAATGTCCACTTGCTGGGAAGTCTACGGTGTACACGCCTTTCTGTAAGAGTGCGAGC
**************************************************((((((((......((((((((...))))))))...)))))))).......((((((.((((((((.(((((.....................................................)))))...))))))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V041
embryo
 V049
head
..........................................................................................................TTGGGCGTGTTACGTTATTTTG........................................................................................................................... 22 3 2 0.50 1 1 0 0
..........................................................................................................TTGAGGGTGTTACGTTTTTT............................................................................................................................. 20 3 20 0.05 1 0 0 1
.......................................................................................................................................................................................................TCCACTTGCCCGGACGTC.................................. 18 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6359:3127201-3127451 + dmo_569 C---------------ACACACAC-ACACACACA-AACACA-------------------TT---TCTATG-----------A--GCATTTC--CTTACTT----------GTTTTTAATATACTATAAATATATTGA---------------------------------------------------------------------AAA----------------------------------------------------------------------------TATA---TTGACATAT---TGAACTTCCTTTT------------------------------------------------------------------------------------------------------GTAAACCCGCAAAATGCAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAATAACAAAAC-------------------------AAAAAAAATCA------------------------------------------------TCAACAACAA---CAACAACA-----ACTGTT---GCACCATTTGCGGGGAACTTACAGGTGAACGACCCTTCAGATGCCACATGTGCGGAAAGACATTCTCA-----------------------------CGCTC---------G---------------------
droVir3 scaffold_12970:1918977-1919168 + C---------------ACACACAC-GCACATACA-C-TGCA-------------------TT---TATATG-----------A----------------------------------------------------CTAGCCCTTG------------------AT-------------------------------------------------------------------ATT--------------------------------TATCCT-------T---------TATCTGACATAT---TGTACTTCCTTTT------------------------------------------------------------------------------------------------------GTGGCCCCGC----------------------------------------------AAAAAACA----AAACAAACAAC---------------------A---------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------AAAA--------TTT---GCTCGTTTTGTGTGGGAATTGCAGGTGAACGACCCTTCAGATGTCAAATGTGCGGGAAAACTTTCTCG-----------------------------CGCTC---------G---------------------
droGri2 scaffold_15081:1634241-1634415 + C---------------ACACACAC-ACATCATT--GACATG-------------------AT---TTGAAGA-GAAT-A----------TT-----------------------------------------------------G------------------GTTT-TATCCTT-------------------------------------------------------------------------------------------------------------------TATCTGACATATTATTGAAACAACTTTT------------------------------------------------------------------------------------------------------GTGGCCCCGC------------------------------------------------------------------------------AA--C-------AAAAACGTGTGTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTGTGGGAATTGCAGGTGAACGACCATTCAGATGTCACATGTGCGGAAAAACCTTCTCG-----------------------------CGCTC---------A---------------------
droWil2 scf2_1100000004921:2310838-2311064 + C---------------ACACACAG-AAACACCCC-CACACC-------------------CC---ACCCCC-----------C--ACTCTCT--CTCATATGTCTCTAACATAAT----------------------------------------------------------------GGCA--------------TT-GAGGCTGTAGAAATACGGCAGCA-------------------------------------------------------------------------------------------TCTTTCCGCACATTCTCGTAAATAAGTTT----TGAG------------------------------------------------------------------------------A----------------------------------------------AGAAAATA----AAAAAAG--------AAACCAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAA------------------------------------------------CGAGCGATAGA---AAAGACGAAATAAGCGTT---ACGTCGCCT----A---------------------------------------------GGTTTCCCCCTGTAAATAGAT-------------------AGAGGAATATATA---------------------
dp5 XL_group1e:8494181-8494335 - C---------------ACACACAC-ACACACAGG-GCCACG-------------------TA---TGTGTG-----------T--GCAGA-----------------------AT----------------------------------------------------------------AAT--------------------------------------------------ATG--------------------------------CGGCGC-------TTAAAAAAGG---------------TGAACGGCATTTTGT------------------GGTTGTCTCTAAA----------------------------------------------------------------------------AAC----------------------------------------------AAAAAGCA----AAAAGAAAAAA---------------------G---------------------------------------------------------------------------------------------------------------------------------------------GCAAAATCCAACGAAAAAAAACT------------------------------------------------ACAGAA---ACAAAAATA-----------------------------------------------------------------------------------------------------------------------------AAAA---------------------
droPer2 scaffold_13:2040818-2041077 + C---------------AAACACAC-ATACACAAA-AATACA-------------------CT---GAAAAAAA---------A-----------------------------------------------------------------------------------------------------------------------------A------------------------------------ACGAAAAGAAACCGAAAATATGCAAAGT---------------------------------------------------------------------------------------AGAAACAGAGGGAAATATTTTTGTAAGAGCCGGAGAGAAAACACAAAGCAATAGACTTAAGCGAAATTGTACAACGCGAAA--------------AAGAAAACGTAGACAAAGC--AAA-ACC-AACTTCAA------TAA-ACCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------CAA--------------------------------------------AAAATACAACTACAACTAC------------------------AACTACAACTACACC--TACACATGC-------------------------------------------------------------------------ATATAGATACATATACCTATACTA---------T---------------------
droAna3 scaffold_13117:2155603-2155783 - C---------------CCGTATAC-ATATATATA-TATATA-------------------TT---TATATA-----------T--ATATAT--------GT----------GTA------------------------------------------------------TATCATA-------------TATCTAT------------AGACATA------------------TACATATAT----GCGTATAGATATTGTATTTAAGC--------------------------------------------------------------------------------------ATTTTTAGGTATTAAACGAATTGTATTTGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAAGAAAAAAAAAACA----------AAAC------------------------------------------AAAATCTTACA------------------CACA---A------------------------------------------------------------------------------------------CATACACA-----------------------------------AC--------------------TAT
droBip1 scf7180000396621:57787-57910 + ACTTCCTTGTTGACTTACATATAC-ATATATACA-AGTACA-------------------TA---TACAGT------------------------------------------------------ATACATATATACA----------------------------------------------------ACCAA------------TAT-------------------------------TATA------------------------------------------------T-----------------------------------------ACACACCA----TATA------------------------------------------------------------------------------C----------------------------------------------AAAAAAAA----AAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC------------------------------------------AAGAAATTAAA------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------ACGA---------------------
droKik1 scf7180000302264:19411-19624 - C---------------ACACACAC-ACATAATAT-AAATAT-------------------ATATTTATAAA------CT---AAA--------------------------------------------T----------------------------------TGT-TGTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTCAT------TAT-GCT----------------------TATGTTTTTATATCTCGATATACAGATATAAGTATATACACATATATATTGTATATCTATATTGTTTACTACACCTTTTTCTATAAGCATTAAGTAATTTAATTAAATAAATTTAATAAAAT-------------------------GAGAAAACTAA------------------------------------------------ACAAAA---ACAAAAGCA-----------------------------------------------------------------------------------------------------------------------------A-----------------------C
droFic1 scf7180000454105:1727217-1727383 - C---------------ATACACAC-ACATACACC-AAGAAA-------------------GG---GGGACT-----------A----------------------------------------------A----------------------------------CACAC-----A-------------CAGTTGCAGTCACATACGCAATTCAA------------------TGAAGAAA------------------------------TGCTCCAAGTCAATGACCCG---------------------GA-------------------------AATTGTGTCTA--------------------------------------------------------------------------------------------------------------------------------AAAAGCA----A----AACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAAAAC-------------------------CAGCAACACCA------------------------------------------------ACAGCAAC------AGCAAC------------------------------------------------------------------------------------------------------------------------------A---------TAGAACTTTTAC
droEle1 scf7180000491006:345715-345964 - C---------------TCACACAC-ACACACACA-ACAAAA-------------------AT----GGCAGG-AAGC-A---GCG--------------------------------------------A----------------------------------CGC-CAGCGCCAGCG---C---CA--ACTGCAACCGAAATCAAAATCAAA------------------ATGAGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAATGCAAAATGTAAAACGCCGCAAATTGCTTGTAGGCAACGC--AGACAACA-ACAACAACAACAACAACAACACTAGTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACA---------------------------------------------------ACAACAACAAC---AACAACAATGTCAGCGT--TGGCGAC-------------------------------------------------------------------------GGATGGGTAAATGGAAATAGAAGATGAGCGGAAA---------------------
droRho1 scf7180000763611:282550-282733 + T---------------ACAAACAA-ACCAATACA-AACACA-------------------TT---TAGAATTA----TGAAAA----------------------------------------------A----------------------------------CACACGC-ATACATTTAAA---TA--TTTATAGTA-AAAACAATAATAAT------------------ATT--------------------------------TAT--------TATTACAAAATG---------------------GCA-------------------------GCTGCGGTTG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCG----A----AACAACAACTAAACTAAAATAAAAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA---------------------------------------------------------------------------------------------------------------------------TGAATATA-----------------------------------ACAAACAAAAATGAAAA-----ATG
droBia1 scf7180000301182:469-600 - A---------------CCTTAGAT-ACATAGATG-AAGATA-------------------CA---TAGATG-----------A--AGATCCT--------------------------------------------------------------------------------------------CAGAGAACTAA------------AAC-------------------------------CACA------------------------------------------------GA----------------AA-------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTGAAGTCAAAAAAA-----------TAATGAAGAG--------------------------------------------ACAAAACATCAACAATAACACCAACAGCTACAGC--------------------------A--------------------------------------------------------------------------AC-----------------------------------ACCA---------------------
droTak1 scf7180000415260:277143-277306 + C---------------ACACACAC-AGACATACA-AATACA-------------------TA---TATTTT-------------------------------------------------------------------------------------------TG-----GC-CTATTTTTCTA---TA--ATCCTAACA-AAACCAAGAACGAA------------------ATTTTAAAA----GCAAAACGACA----------------------------------------------------------ACTT----------------------------CTATAAGGAC---------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAATGAAAAGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTT------------------------------------------------------------------------------------------------------------------------CGAATGTA-----------------------------------AATAACAAAAGCGAAAAGGATTTTC
droEug1 scf7180000409794:46301-46464 - C---------------TCACACAC-ACACACACA-GACACA-------------------TT---TAAGGCAA----CT---------AAAT--TAAGCATATTTTAGCTATTTT----------------------------------------------------------------TATA--------------TA-GAAATAATAATAATTTGGCTGCT-------------------------------------------------------------------------------------------TCTTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTAATGGCTTTGAAATGAACAGCGAGCCAAGAA-----CATACAGACAAATATTTCCAATAAC-----------------------------------AATA---------------------
dm3 chrX:8118817-8118983 + G---------------AAACACAA-GAAAAGCACCAACACC-------------------AC---CAC--C-----------A---------------------------------------------------------------------------------------------------------------CCACCACAATCACAGCTTTG---------ACTAACAATGAT--------------------------------CAT--------GCTAACAAAATG---------------------TT------------------------------------------------------------------------------------------------------------------------------------AATTGTTGCATATCATT------CTTCACATCAACATGA----ACAACTACAACAACAACACCCA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACATCA------------------------------------------------ACAACA---AC---AACAACA--------------------------------------------------------------------------------------------------------------------------ATTG---------------------
droSim2 x:11981591-11981783 - C---------------ACACACAC-ACATACACA-TACACA-------------------TC---TACATC-----------G--AATTGCCGAAATTTAC----------TTTT---------------------------TTGGAAGTGTTAAATTGCCA------------------------AAATCC--C------------AAA-------------------------------CACA------------------------------------------------AC----------------CA-TTTT-TTTCGCATTTT-------------------------------------------------------------------------TGTTGTATGAGATT--------------------------------------------------------------------------------------TGCCCAAAGTGAAGTGAT-----------------------------------------------------------------------------------------------------------------GCAAA-----------TAACGAAGAA--------------------------------------------AAAAAAAAGAAAAAATGAAAGAAATAAA-AT---GAT------ATC------------------------------------------------------------------------------------------------------------------------------AATA---------------------
droSec2 scaffold_0:1364087-1364275 - C---------------ACACAACACCCCACAGTA-TAAACATTTACACCTATATACTTTATA---TATATA-----------T----------------------------------------------------ATAAC-TTTGGTAATGGTATTTTGCCTTG-----GC-ACGTGTT---------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTC------------------------------------------------------------------------------------------------------TTAGCCA------------------------------------------------------TGG----CC----------------------------------GTGCCATAAA-----------------------------------------------------------------------------AAGCAAAAAATGA-------ACAGAAGATTTAAAT----------------------------AATAAAAAAAG-------------------ACACAA---------------------T-AT---A-------AAACC-----------------------------------------------------------------------------------------------------------------------------AAAA------------GCGTTGCGC
droYak3 X:13372906-13373078 + A---------------ACAAACCA-ACACACACA-CACACA-------------------TT---TAGCATTA----TGAA-A----------------------------------------------A----------------------------------CACACGC-ATACATTTAAA---TA--ATTATAGTA-AAAACAATAATAAT------------------ATT--------------------------------TAT--------TATTAAAAAATG---------------------GCA-------------------------GC-GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCG----AAACAAACAACAACTAAACTAAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAA---------------------------------------------------AACGCA---A------------------------------------------------------------------------------------------TGAATACA-----------------------------------ACAA---------------------
droEre2 scaffold_4845:14330665-14330870 - C---------------ATGCACAT-GCACACACA-CACACA-------------------CT---TCCCCA--------------ACATGTTACGGTATAT----------GTAT---------------------------T-------------------TG-----GT-GTGTGCC---CCAAAAGTTCTGA------------AAA-------------------------------CGTA------------------------------------------------GC----------------CA-------------------------G--------------------------------------------------------------------GGCATGGGGTTAAAC------------------------------------------------------------------------------------------------------GCGTTCTTAA-----------------------------------------------------------------------------TATCGCATAAAAA-------ATAGGAGCGTAACAAAGTT----------AAAC---------------AAAACTTTTGCTGCAACAAAACTTT--CG-----------------------------------------------------AGTT---GCCCCACCAGAG-----------------------------------------------------GGAATCCA-----------------------------------GC--------------------GGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
C---------------ACACACAC-ACACACACA-AACACA-------------------TT---TCTATG-----------A--GCATTTC--CTTACTT----------GTTTTTAATATACTATAAATATATTGA---------------------------------------------------------------------AAA----------------------------------------------------------------------------TATA---TTGACATAT---TGAACTTCCTTTT------------------------------------------------------------------------------------------------------GTAAACCCGCAAAATGCAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAATAACAAAAC-------------------------AAAAAAAATCA------------------------------------------------TCAACAACAA---CAACAACA-----ACTGTT---GCACCATTTGCGGGGAACTTACAGGTGAACGACCCTTCAGATGCCACATGTGCGGAAAGACATTCTCA-----------------------------CGCTC---------G---------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATTTGCGGGGAACTTACAG.............................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGATGCCACATGTGCGGAAAGACA.......................................................................2711.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCCTTCAGATGCCACATGTGCGGA.............................................................................2711.001100000
....................ACAC-ACACACACA-AACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
droVir3
C---------------ACACACAC-GCACATACA-C-TGCA-------------------TT---TATATG-----------A----------------------------------------------------CTAGCCCTTG------------------AT-------------------------------------------------------------------ATT--------------------------------TATCCT-------T---------TATCTGACATAT---TGTACTTCCTTTT------------------------------------------------------------------------------------------------------GTGGCCCCGC----------------------------------------------AAAAAACA----AAACAAACAAC---------------------A---------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------AAAA--------TTT---GCTCGTTTTGTGTGGGAATTGCAGGTGAACGACCCTTCAGATGTCAAATGTGCGGGAAAACTTTCTCG-----------------------------CGCTC---------G---------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................TATG-----------A----------------------------------------------------CTAGCCCTTG------------------AT-------------------------------------------------------------------ATT--------------------------------TATCCT-------T---------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGATGTCAAATGTGC................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAATGTGCGGGAAAACTTTC....................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAATTGCAGGTGAACGACCCTTC...............................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.....................................TGCA-------------------TT---TATATG-----------A----------------------------------------------------CTAGCCCTTG------------------AT-------------------------------------------------------------------AT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATGTCAAATGTGCGGGAAAACT.......................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GCTCGTTTTGTGTGGGAATTGC...............................................................................................................2411.001000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGGGAAAACTTTCTCG-----------------------------C...................................2411.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGGGAAAACTTTC....................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCAAATGTGCGGGA............................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGGGAATTGCAGGTGAACG......................................................................................................2411.001000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGTGGGAATTGCAG.............................................................................................................2011.001000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGTCAAATGTGCGG..............................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGGGAAAACTTTCTCG-----------------------------CGCT................................2511.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAAATGTGCGGGA............................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
droGri2
C---------------ACACACAC-ACATCATT--GACATG-------------------AT---TTGAAGA-GAAT-A----------TT-----------------------------------------------------G------------------GTTT-TATCCTT-------------------------------------------------------------------------------------------------------------------TATCTGACATATTATTGAAACAACTTTT------------------------------------------------------------------------------------------------------GTGGCCCCGC------------------------------------------------------------------------------AA--C-------AAAAACGTGTGTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTGTGGGAATTGCAGGTGAACGACCATTCAGATGTCACATGTGCGGAAAAACCTTCTCG-----------------------------CGCTC---------A---------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
C---------------ACACACAG-AAACACCCC-CACACC-------------------CC---ACCCCC-----------C--ACTCTCT--CTCATATGTCTCTAACATAAT----------------------------------------------------------------GGCA--------------TT-GAGGCTGTAGAAATACGGCAGCA-------------------------------------------------------------------------------------------TCTTTCCGCACATTCTCGTAAATAAGTTT----TGAG------------------------------------------------------------------------------A----------------------------------------------AGAAAATA----AAAAAAG--------AAACCAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAA------------------------------------------------CGAGCGATAGA---AAAGACGAAATAAGCGTT---ACGTCGCCT----A---------------------------------------------GGTTTCCCCCTGTAAATAGAT-------------------AGAGGAATATATA---------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
C---------------ACACACAC-ACACACAGG-GCCACG-------------------TA---TGTGTG-----------T--GCAGA-----------------------AT----------------------------------------------------------------AAT--------------------------------------------------ATG--------------------------------CGGCGC-------TTAAAAAAGG---------------TGAACGGCATTTTGT------------------GGTTGTCTCTAAA----------------------------------------------------------------------------AAC----------------------------------------------AAAAAGCA----AAAAGAAAAAA---------------------G---------------------------------------------------------------------------------------------------------------------------------------------GCAAAATCCAACGAAAAAAAACT------------------------------------------------ACAGAA---ACAAAAATA-----------------------------------------------------------------------------------------------------------------------------AAAA---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C---------------AAACACAC-ATACACAAA-AATACA-------------------CT---GAAAAAAA---------A-----------------------------------------------------------------------------------------------------------------------------A------------------------------------ACGAAAAGAAACCGAAAATATGCAAAGT---------------------------------------------------------------------------------------AGAAACAGAGGGAAATATTTTTGTAAGAGCCGGAGAGAAAACACAAAGCAATAGACTTAAGCGAAATTGTACAACGCGAAA--------------AAGAAAACGTAGACAAAGC--AAA-ACC-AACTTCAA------TAA-ACCAACAA---------------------------------------------------------------------------------------------------------------------------------------------------CAA--------------------------------------------AAAATACAACTACAACTAC------------------------AACTACAACTACACC--TACACATGC-------------------------------------------------------------------------ATATAGATACATATACCTATACTA---------T---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGAGCCGGAGAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAGACAAAGC--AAA-ACC-.................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTGTACAACGCGAAA--------------AAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
...............................................................................................................................................................................................................................................................................GT---------------------------------------------------------------------------------------AGAAACAGAGGGAAATATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACACC--TACACATGC-------------------------------------------------------------------------AT.....................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACAAAGC--AAA-ACC-AACTTCAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................CACAC-ATACACAAA-AATACA-------------------CT---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TGTAAGAGCCGGAGAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACC--TACACATGC-------------------------------------------------------------------------ATATAG.................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGAGCCGGAGAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................ATGCAAAGT---------------------------------------------------------------------------------------AGAAACAGAGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droAna3
C---------------CCGTATAC-ATATATATA-TATATA-------------------TT---TATATA-----------T--ATATAT--------GT----------GTA------------------------------------------------------TATCATA-------------TATCTAT------------AGACATA------------------TACATATAT----GCGTATAGATATTGTATTTAAGC--------------------------------------------------------------------------------------ATTTTTAGGTATTAAACGAATTGTATTTGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAAGAAAAAAAAAACA----------AAAC------------------------------------------AAAATCTTACA------------------CACA---A------------------------------------------------------------------------------------------CATACACA-----------------------------------AC--------------------TATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTACA------------------CACA---A------------------------------------------------------------------------------------------CATACACA-----------------------------------AC--------------------T..2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAAAAAAAAAACA----------AA...............................................................................................................................................................................................................................................19100.101010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAAAAAAACA----------AAA..............................................................................................................................................................................................................................................19200.051010000
droBip1
ACTTCCTTGTTGACTTACATATAC-ATATATACA-AGTACA-------------------TA---TACAGT------------------------------------------------------ATACATATATACA----------------------------------------------------ACCAA------------TAT-------------------------------TATA------------------------------------------------T-----------------------------------------ACACACCA----TATA------------------------------------------------------------------------------C----------------------------------------------AAAAAAAA----AAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC------------------------------------------AAGAAATTAAA------------------------------ATTA-----------------------------------------------------------------------------------------------------------------------------ACGA---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C---------------ACACACAC-ACATAATAT-AAATAT-------------------ATATTTATAAA------CT---AAA--------------------------------------------T----------------------------------TGT-TGTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTCAT------TAT-GCT----------------------TATGTTTTTATATCTCGATATACAGATATAAGTATATACACATATATATTGTATATCTATATTGTTTACTACACCTTTTTCTATAAGCATTAAGTAATTTAATTAAATAAATTTAATAAAAT-------------------------GAGAAAACTAA------------------------------------------------ACAAAA---ACAAAAGCA-----------------------------------------------------------------------------------------------------------------------------A-----------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
C---------------ATACACAC-ACATACACC-AAGAAA-------------------GG---GGGACT-----------A----------------------------------------------A----------------------------------CACAC-----A-------------CAGTTGCAGTCACATACGCAATTCAA------------------TGAAGAAA------------------------------TGCTCCAAGTCAATGACCCG---------------------GA-------------------------AATTGTGTCTA--------------------------------------------------------------------------------------------------------------------------------AAAAGCA----A----AACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAAAAC-------------------------CAGCAACACCA------------------------------------------------ACAGCAAC------AGCAAC------------------------------------------------------------------------------------------------------------------------------A---------TAGAACTTTTACSizeHit CountTotal NormTotal
No Reads
droEle1
C---------------TCACACAC-ACACACACA-ACAAAA-------------------AT----GGCAGG-AAGC-A---GCG--------------------------------------------A----------------------------------CGC-CAGCGCCAGCG---C---CA--ACTGCAACCGAAATCAAAATCAAA------------------ATGAGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAATGCAAAATGTAAAACGCCGCAAATTGCTTGTAGGCAACGC--AGACAACA-ACAACAACAACAACAACAACACTAGTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACA---------------------------------------------------ACAACAACAAC---AACAACAATGTCAGCGT--TGGCGAC-------------------------------------------------------------------------GGATGGGTAAATGGAAATAGAAGATGAGCGGAAA---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T---------------ACAAACAA-ACCAATACA-AACACA-------------------TT---TAGAATTA----TGAAAA----------------------------------------------A----------------------------------CACACGC-ATACATTTAAA---TA--TTTATAGTA-AAAACAATAATAAT------------------ATT--------------------------------TAT--------TATTACAAAATG---------------------GCA-------------------------GCTGCGGTTG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCG----A----AACAACAACTAAACTAAAATAAAAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA---------------------------------------------------------------------------------------------------------------------------TGAATATA-----------------------------------ACAAACAAAAATGAAAA-----ATGSizeHit CountTotal NormTotal
No Reads
droBia1
A---------------CCTTAGAT-ACATAGATG-AAGATA-------------------CA---TAGATG-----------A--AGATCCT--------------------------------------------------------------------------------------------CAGAGAACTAA------------AAC-------------------------------CACA------------------------------------------------GA----------------AA-------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTGAAGTCAAAAAAA-----------TAATGAAGAG--------------------------------------------ACAAAACATCAACAATAACACCAACAGCTACAGC--------------------------A--------------------------------------------------------------------------AC-----------------------------------ACCA---------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C---------------ACACACAC-AGACATACA-AATACA-------------------TA---TATTTT-------------------------------------------------------------------------------------------TG-----GC-CTATTTTTCTA---TA--ATCCTAACA-AAACCAAGAACGAA------------------ATTTTAAAA----GCAAAACGACA----------------------------------------------------------ACTT----------------------------CTATAAGGAC---------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAATGAAAAGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGTT------------------------------------------------------------------------------------------------------------------------CGAATGTA-----------------------------------AATAACAAAAGCGAAAAGGATTTTCSizeHit CountTotal NormTotal
No Reads
droEug1
C---------------TCACACAC-ACACACACA-GACACA-------------------TT---TAAGGCAA----CT---------AAAT--TAAGCATATTTTAGCTATTTT----------------------------------------------------------------TATA--------------TA-GAAATAATAATAATTTGGCTGCT-------------------------------------------------------------------------------------------TCTTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTAATGGCTTTGAAATGAACAGCGAGCCAAGAA-----CATACAGACAAATATTTCCAATAAC-----------------------------------AATA---------------------SizeHit CountTotal NormTotal
No Reads
dm3
G---------------AAACACAA-GAAAAGCACCAACACC-------------------AC---CAC--C-----------A---------------------------------------------------------------------------------------------------------------CCACCACAATCACAGCTTTG---------ACTAACAATGAT--------------------------------CAT--------GCTAACAAAATG---------------------TT------------------------------------------------------------------------------------------------------------------------------------AATTGTTGCATATCATT------CTTCACATCAACATGA----ACAACTACAACAACAACACCCA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACATCA------------------------------------------------ACAACA---AC---AACAACA--------------------------------------------------------------------------------------------------------------------------ATTG---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................TAACAATGAT--------------------------------CAT--------GCTAACAAAATG---------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................CACAATCACAGCTTTG---------ACTAACAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA----ACAACTACAACAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCCA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACATCA------------------------------------------------ACAAC...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................A-GAAAAGCACCAACACC-------------------AC---CAC--C-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGCACCAACACC-------------------AC---CAC--C-----------A---------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................G---------ACTAACAATGAT--------------------------------CAT--------GCTAACAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACATGA----ACAACTACAACAACAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA----ACAACTACAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAA-GAAAAGCACCAACACC-------------------AC---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGA----ACAACTACAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCACCAACACC-------------------AC---CAC--C-----------A---------------------------------------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTACAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCA------------------------------------------------ACAACA---AC---AACAAC....................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA------------------------------------------------ACAACA---AC---AACAACA--------------------------------------------------------------------------------------------------------------------------.........................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA------------------------------------------------ACAACA---AC---AACAACA--------------------------------------------------------------------------------------------------------------------------A........................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCA------------------------------------------------ACAACA---AC---AACA......................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C---------------ACACACAC-ACATACACA-TACACA-------------------TC---TACATC-----------G--AATTGCCGAAATTTAC----------TTTT---------------------------TTGGAAGTGTTAAATTGCCA------------------------AAATCC--C------------AAA-------------------------------CACA------------------------------------------------AC----------------CA-TTTT-TTTCGCATTTT-------------------------------------------------------------------------TGTTGTATGAGATT--------------------------------------------------------------------------------------TGCCCAAAGTGAAGTGAT-----------------------------------------------------------------------------------------------------------------GCAAA-----------TAACGAAGAA--------------------------------------------AAAAAAAAGAAAAAATGAAAGAAATAAA-AT---GAT------ATC------------------------------------------------------------------------------------------------------------------------------AATA---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATT--------------------------------------------------------------------------------------TGCCCAAAGTGAAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................2413.00300000003000000000
............................TACACA-TACACA-------------------TC---TACATC-----------G--AATTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGAAGAA--------------------------------------------AAAAAAAAA............................................................................................................................................................................................19100.10100000000010000000
droSec2
C---------------ACACAACACCCCACAGTA-TAAACATTTACACCTATATACTTTATA---TATATA-----------T----------------------------------------------------ATAAC-TTTGGTAATGGTATTTTGCCTTG-----GC-ACGTGTT---------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTC------------------------------------------------------------------------------------------------------TTAGCCA------------------------------------------------------TGG----CC----------------------------------GTGCCATAAA-----------------------------------------------------------------------------AAGCAAAAAATGA-------ACAGAAGATTTAAAT----------------------------AATAAAAAAAG-------------------ACACAA---------------------T-AT---A-------AAACC-----------------------------------------------------------------------------------------------------------------------------AAAA------------GCGTTGCGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A---------------ACAAACCA-ACACACACA-CACACA-------------------TT---TAGCATTA----TGAA-A----------------------------------------------A----------------------------------CACACGC-ATACATTTAAA---TA--ATTATAGTA-AAAACAATAATAAT------------------ATT--------------------------------TAT--------TATTAAAAAATG---------------------GCA-------------------------GC-GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCG----AAACAAACAACAACTAAACTAAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAA---------------------------------------------------AACGCA---A------------------------------------------------------------------------------------------TGAATACA-----------------------------------ACAA---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................A-------------------------GC-GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCG----AAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................AT--------TATTAAAAAATG---------------------GCA-------------------------GC-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................ATG---------------------GCA-------------------------GC-GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................AAACCA-ACACACACA-CACACA-------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000000000
..................AAACCA-ACACACACA-CACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17101000000000
droEre2
C---------------ATGCACAT-GCACACACA-CACACA-------------------CT---TCCCCA--------------ACATGTTACGGTATAT----------GTAT---------------------------T-------------------TG-----GT-GTGTGCC---CCAAAAGTTCTGA------------AAA-------------------------------CGTA------------------------------------------------GC----------------CA-------------------------G--------------------------------------------------------------------GGCATGGGGTTAAAC------------------------------------------------------------------------------------------------------GCGTTCTTAA-----------------------------------------------------------------------------TATCGCATAAAAA-------ATAGGAGCGTAACAAAGTT----------AAAC---------------AAAACTTTTGCTGCAACAAAACTTT--CG-----------------------------------------------------AGTT---GCCCCACCAGAG-----------------------------------------------------GGAATCCA-----------------------------------GC--------------------GGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................CACA-------------------CT---TCCCCA--------------ACATGTTACGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTAACAAAGTT----------AAAC---------------AAA...........................................................................................................................................................................................................................2311.0010000100

Generated: 05/17/2015 at 10:34 PM