dmo_562

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATATACGCCAAGGTGTGGAAGGGACCGCGCAAAACGACTGAATCCAAAATGTATGCAGCAACAATAATAATCTTAACAATAACAACAACAACAACAACAACAGTAGTAGCAACAAGAACACAATTAACAAGAGCAGCAGCAGCAACAATCGCAGCTAGCTGACATTTGATACCCCCAGCAAGAACATATCAAATATGCTTTTATTTTAACATTGTTAATTTTCTGCTGTTTATTAATTACTGTGCACAGCT ************************************************......((((.................................((.((....)).))..........................(((((((.((.......)).))).))))..((((((((...............)))))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head
....................................................................................................................................................................................................................................TTTCTTTATTACTGTGCAC....	19	2	5	2.00	10	9	1
....................................................................................................................................................................................................................................TTTCTTTATTACTGTGCACA...	20	2	3	2.00	6	6	0
......GCCAAGGTGTGGAAGGGACC.................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0
......GCCAAGGTGTGGAAGGGACCGC...............................................................................................................................................................................................................................	22	0	1	1.00	1	1	0
.....................................................................................................................................................................................................................................TTCTTTATTACTGTGCAC....	18	2	9	0.78	7	7	0
..................................................................................................................................................................................................................................GGTTTCTTTATTACTGTGCAC....	21	3	3	0.33	1	1	0
....................................................................................ACAACAACAACAACAACAGTAGT................................................................................................................................................	23	0	4	0.25	1	1	0
.....................................................................................................................................................................................................................................TTCTTTATTACTGTGCACA...	19	2	6	0.17	1	1	0
................................................ATGTATGCAGCAAGGATA.........................................................................................................................................................................................	18	2	8	0.13	1	1	0
......................................................................................................GGAGTAGCAACTGGAACACAA................................................................................................................................	21	3	11	0.09	1	1	0
............................................CAATATGTATGCTGCAGCAAT..........................................................................................................................................................................................	21	3	15	0.07	1	1	0

TATATGCGGTTCCACACCTTCCCTGGCGCGTTTTGCTGACTTAGGTTTTACATACGTCGTTGTTATTATTAGAATTGTTATTGTTGTTGTTGTTGTTGTTGTCATCATCGTTGTTCTTGTGTTAATTGTTCTCGTCGTCGTCGTTGTTAGCGTCGATCGACTGTAAACTATGGGGGTCGTTCTTGTATAGTTTATACGAAAATAAAATTGTAACAATTAAAAGACGACAAATAATTAATGACACGTGTCGA ************************************************......((((.................................((.((....)).))..........................(((((((.((.......)).))).))))..((((((((...............)))))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	M046 female body
....................................................................................................................................................................AGACTATGGAGGTCGTTCT....................................................................	19	2	1	1.00	1	1	0
.....................................................................................................................................................................................................................................AAGAAATAATGACACGTGT...	19	2	6	0.33	2	0	2
....................................................................................................................................................................AGACTATGGAGGTCGTTC.....................................................................	18	2	4	0.25	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6359:2120335-2120585 -	dmo_562	ATA---TACGC-CA----AGGTGTGGAA-------GGGAC----CGC-----------------------G---------CAA----------------------------------AACGACTGAATCCAAA-------------------------------------------------ATGT--------ATGCAGCAACAATAATAA-------------------------------------------------------------TCT--TAACAATAACAACAACAACA---------------------------ACAACAAC------------------------------AGT-----------------------------AGTAGCAACAAGAA-------CA---------CAATTAACAA------------GAGCAGCAGCAGCAACAATCGC--------AG------------------CTAGCTGACATTTGATAC------------C-------------------------------CCCAGCAA-------------------------------------------GAA-----------CAT--------------------------------------------------------------------------------------ATCAAA-TATGCTTTTATTTTA-----------------ACATTGTTAATTTTCT-GCT------------------------------------------------------------------------------------------------------GTTTATTAATTACTGTGCACAGCT
droVir3	scaffold_13042:4305452-4305686 +	dvi_14749	ATA---TACGC-GA----AGGTGTGGAA-------GGGAC----CAC-----------------------G---------CAA----------------------------------AACAACTGAATCGAAA-------------------------------------------------ATGT--------ACG---------------------------------------C-------------------------------AATAA-----TCACAATAACAATAA-----CAAACACAAAAACAACTAGCAATGGTTG----------------------------------------------------------------TTGTT---GTC-----------------AGCCAACAGCAAGCG-------------------------------------------------------------------------ACATTTGACAC------------CTCTTGACAAC---------AGCAAC---AACAGCAACAA-------------------------------------------TAA-----------CTT--------------------------------------------------------------------------------------ATCAA-TT-CGCTTTCGTTTTA-----------------ATATTTCTAATTTGCT-GCT------------------------------------------------------------------------------------------------------GTTTGTTAATTACTGCGCAGAGCT
droGri2	scaffold_14853:7171187-7171413 +		ATA---TACGC-CA----AGGTGTGGAA-------GGGAC----CCC-----------------------G---------CAA----------------------------------AACGACTGAATCGAAA-------------------------------------------------ATGT--------ACG---------------------------------------AAAA---AGATTACGAGAAGAATAAGTG----------------A-----------------CAACCACAGCAGCAAC-AGCAATTGTTGCG-------------------------------CACT---------------------------TT------------------------------------GTGCG-------------------------------------------------------------------------ACATTTGACAC------------C-------AGCAGCAACAACCACATC---AACCACAACAA-------------------------------------------CAA-----------ATT--------------------------------------------------------------------------------------ATCAAT-TACGCTTTTGTGTTA-----------------ATATGAATAATTT----AAT------------------------------------------------------------------------------------------------------TTTTGTTGATTACTG--TGACTCT
droWil2	scf2_1100000004521:4968120-4968364 -		AAA---CACC----ACCA------------------------CCAAACGTGTCTAAATGAAAGTCAGGCCAAATTAGTAACTATTATGTACTACTACAAGCTAATAATTTATAGTTA----------------------------------------------G------AAACAA-----------------A-AA----------------------------------------------AGAA-AAGAAAAAAAAAAGAAACAA-----CCTTCCAAT---AACAGCA------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------CAG------CAACAAGAAA---------------------------------------------------------------------------------------AACAAA---AACAACAGCAACACAATAAGCAACAA----------------------------AAA------TTT-----------------------GTTATTAA-----TTTTTAATTTTACCTATAT-ATATACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAATT--GTATATAG
dp5	XL_group1e:8487938-8488148 -		TAA---TTCGCC--GCCG--------------------------------------------------CCG---CCGCAGCAGCCACAGTCGCA---------------------------------C-----------------------AAC-------AA-------CAACAACAACA-ACAA--------CAGCAGCAACAGCAGCAACAGTTGCAACAGCTGCAACTGC---------------------------------------------------A---------------------------------------AC------------------------------------AGC-----------------------------AACAGCAGCAGAATCA----------------ACAACAACA------------ACAACAACAGC------AAC--------AGCAGCAGCAACAT-T-CA------------------------------------------------------------------------------------------------------------------------------CTAGC---------------------AGCACTAGCAC------CAGTAATACCAGTAGCAAATACACTACAAC----------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC
droPer2	scaffold_13:85290-85503 +		TAA---TTCGCC--GCCG--------------------------------------------------CCG---CCGCAGCAGCCACAGTCGCA---------------------------------C-----------------------AAC-------AA-------CAACAA------------------CAGCAGCAACAGCAA---CAGTTGCAACAGCTGCAACTGC---------------------------------------------------AACAGCA---------------------------------------AC------------------------------AG-CAGCAGAATCAACAACAAC---------------------------------A--------ACAGCAACAA------CAACAACAACAACAAC------AAC--------AGCAGCAGCAACAT-T-CA------------------------------------------------------------------------------------------------------------------------------GTAGC---------------------AGCACTAGCAC------CAGTAATACCAGTAGCAAATACACTACAAC----------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC
droAna3	scaffold_13266:6861521-6861769 +		GTGATGCCA-------------------------------ATGGACA-------------------GGCCG---TAGCGGCTGCCACGGCCACATATCAGACCACGGCCAGCA-----------------------------------------------------------------------GT--------CCG---CAACAGCAA---CA------------------------------------------------------------------CCAACAGCAGCA------------------------------GCAAC------------------------------------ACC-----------------------------AGCAACAGCAACACCA----------------GCAGCAGCA------------ACACCAACAGC------AGC--------AGCAGCAGCAACAA-A-GT------------------------------------------------------------------------------------------------------------------------------GTT-----------------------GCAGCCAGC---ACAGCGAATGTTGCCGGTAAGTGTCTGGCTTGAAC----------------------------TT-AAACGCCCTATGTTATTT-----------------------GTTT-GTT------------------------------------------------------------------------------------------------------GGTT-GTAGTCTTTGTGTATGGTT
droBip1	scf7180000396413:1721638-1721905 -		ATT---GGCA----GCTGACCTCCAGAA-------GGTAT----GCG-----------------------G---------CA---------------------------------------------AAAC------------------------------TA-------CAAAAGCAACAA----CAACCAC--------------AATAA------------------------ATTATAT-----------------------------------CAATAATTACAACACCA------------------------------ACAACA--ACCACAACAACAACAGCAGGAAGAAA-------AAGCAGAGAAAGCAGTACCGTTTATTGTT---T-C-----------------GATTTCGAGTAATTT--------------------------------------------------------------------------------------AATTGATTTCTTTTTTA-------------------AAA-----------CAA----AACAAAAAAAACTTG------------------------------------AT--------------------------------------------------------------------------------------TTTAAT-TGTATTTTTATTTTA-----------------ATTTTGTTGATTTATG-ATTATGTATGATTAATATG------------------------------------------------------------------------------------------------------TTTACGAG
droKik1	scf7180000301917:76884-77138 -		GCC---GTCAT-GG----GGGTATTGAG----------AT----GGC-----------------------G---------CGA----------------------------------TTCACCCGGATCGCGTATATCGGGTTCTATATCCAGCAATACTG--G------CAACAC---------------------------CAATAA-----------------------------------------------------------------------------------------CAACCATCATCACAGC-AGCAGCAGCAACG-------------------------------CTCA---------------------------TCAGCAGCAGCAGCACA-GCAGCAAC--A--------ACAATCACAT------CAACAATAATAACAACAAC---AAC--------------------AA-T-CG--------------------------------------------------------------------------CGA----GGTACACA----------------------------------------------------------------TAAAAA---TTATATCAAATTT---------------------------------------------TA--A-------------GGAAATATTT-----------------AAA--------AAT------------------------------------------------------------------------------------------------------ATTTAAAAATTATTTTAAAATATT
droFic1	scf7180000453882:67976-68205 +		ATG---CCGAT-CA----ATTTATAACGCTGGCCC----------CC-----------------------A---CA-----AA----------------------------------GGCGGCCAAAACAT------------------------------CG-------CCGAGCAAGCAA----CAAGCAT--------------TACAA------------------------T-CCCAA-----------------------------------TCGCAATTGCAATTGCA------------------------------ATCGCA--AGTGCAACAACAGCAGCAGCAACAAG-------CCACAAATGCGTCATCGCC---------------------------------G-----------------------------GCGGCAACAGGCGA--------TGCAAC-------------------------------------------------------------------------CACAAC---GCCCACAACGA-------------------------------------------TAACAATTGGTGTT---------------------GCTGCTGGCGT------TGCTGTTGCTG-------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------G------------------TTGAT
droEle1	scf7180000491001:1398457-1398695 +		CAA---CAAGT-GC----AATTC----------------------------------------------------------------------------------------------------------------------------ACACAAC-------AA-------CAACAG----------CAACTG--------CAACAATAA---CAA---------------C---AAT-------------------------------ACCGT-----CAACAACAACAATAATAATA---------------------------ACAATAAT------------------------------AAT-----------------------------AATAATAACAATAA-------TT---------CAAGCAACAA------------TACCAACAACAACAACAATAAC--------CA------------------T-------------------------------------------------------------T-------------------------------------------------------------------------------------ACAACAA---TTACAATAACTATTATAAGAAAAAGTCTCG-----------------------------------TAT-----------GCCGCCCATTTGCCGTTAGTAT--TGCATCCATC-TCT------------------------------------------------------------------------------------------------------ATATACTGTATATACTGTACCCCT
droRho1	scf7180000777233:62541-62760 +		ATT---GCCCA--------A--------------------GTGCAGA-------------------CGCTG---------CAGGGCCA--------TCAGATCATA---------------------GGCAAT-------------------------------------------------TTAA--------ATCAGGTGAATATGAC--------------------------------------------------------TG-----ACTTCCAACAACAGCAGCAGCAGCA---------------------------ACAACAAC------------------------------AGC-----------------------------AACAACAACAACAA-------------------------CAAC---AACAGCAGCAGCAACAGCAAA--------CACAAT-----------------C-ACAACAGACGCT----------------------------------------------------------------------------------CTGATCGGAC---CGTAATCGT-AGA-----------TCC--------------------------------------------------------------------------------------ACCATA-TACTATTCTGTATAA-----------------TTATTATTAATT-------------------------------------------------------------------------------------------------------------------------------------T
droBia1	scf7180000302143:1821074-1821316 -		GTA---AACGC-A---------------------------GTGCAGA-------------------C-----------------------------------------------------AACCAGCGTTT---------------CCCTGG-----------GCAGCGG---------------------------------TGGCAG----------------------------------------------------------------CCT-GCAGCAACAACAGCAGCAGCA---------------------------ACTTAACC------------------------------AGC-----------------------------AGCAGCAACAAATG-------TA---------CATGCAACACA------------TGCAGCAGCAGCAACATCAGC-----------------ACATGC-AAAACATGCGGC----------------------------------------------------------------------------------ACAACTAGACTAAC--------G------------------------------------------------------------------CTGACTTGAGTGCAGACAGACATATGTAAAACATAAG------TT-TAATTTAGGAGTAGTAT-----------------------TATTCT-ATC------------------------------------------------------------------------------------------------------TTGTACCGGTT---------TTTG
droTak1	scf7180000415400:506474-506716 +		GCA---AACA----ACCAGCGTT-----------------------------------------------------------------------------------------------------------C---------------CACTGG-----------GCAGCGG---------------------------------TGGTAG----------------------------------------------------------------CCT----GCAACAACAGCA---GCA---------------------------ACTCAACC------------------------------AAC-----------------------------AGCAGCAACAAATA-------TA---------CATGCAACATATGCAGCAG---CAGCAGCAGCAGCAACATCAGC-----------------ATATGC-AAAACATGCGAC----------------------------------------------------------------------------------ATAACTAGACTTAC--------G------------------------------------------------------------------CAGACT-----GCAATCAGACATATGTAAAACATAAG------CT-TAATTTAAAAGTAGTATTT-----------------ATATTGTACCGGTT--------------------------------------------------------------------------------------TT--------------TTGCATTA---ATT--GTCGAGTA
droEug1	scf7180000409554:665510-665752 -		GGA---CATGC-AG----C--------AGCAACAT----------CT-----------------------C---GA-----GG----------------------------------AGCAGCAGCAACAC---------------------------------------------------------------------------CACCAT------------------C---TGC-------------------------------ACTAC-----CAGCAGCAGCAGCAGCAACA---------------------------ACATTACC------------------------------AGC-----------------------------AGCAGCAGCAACAT-------------------------CTCCCGCAGCAG---CAGCAACAGCAGCAGCATCAGC--------TGTA-----------------------------------CCATCACTATCATCCTGG-------------------CCA-----------CGA----GGCAGCGGTGG----------------------------------------------------------------CCG---CCAGTGCTGGCCT---------------------------------------------CC--T-------------GGATATATCC-----------ACATTGTAAATTATTG-AAA--------------------------------------------------------------------------------------------------------ATATTAACTAAAAGCCCTAGGA
dm3	chr3R:19738404-19738647 +		AAG---GCGA--------------GACA-------GAAGC----CAA-----------------------T---------AAG----------------------------------AACAGCAAGAACAACA-------------------------------------------------ATGC--------C------------GG---------------------------AGCGGAC-----------------------------------CAAA---AAT---------------------------------------------------------------------------AAT-----------------------------AATAATAACAACAACA----------------ACAACAACAACAGCAGTAG---CAGCAGCAGCAGCACTACCAAG-----------------AC--GA-------------------------------------------------------------AAA-----------AGA----GGCAAAAGAAGTTGA------------------------------------GT--------------------------------------------------------------------------------------TCTGGG-CGTGATTTACCGTTA-----------------ACAGTTTTTTTGTGTT-ACTGTTGAAAATTAATCTTATTGCTGGCGATTTCACTGCG-----------------------------------------------------------------ATT--TTCACTGCA--CCGCAGCT
droSim2	x:11699028-11699239 +		ATG---CCGAT-CA----ATTTATAACGCTGGCCC----------CC-----------------------A---CA-----AA----------------------------------GGCGGCCAAAACAT------------------------------CA-------CCGAACAAGCAG----CAAGCAT--------------------------------------------------------------------------------------TGCAATTGCAACAGCA------------------------------ACATGA--GGAGCAGCAGCGGCAGCAGCAACAGG-------CCACAAATGCGTCATCGCC---------------------------------G-----------------------------GCGGCAACTGGCGA--------TGCAAC-------------------------------------------------------------------------CACAAC---GCCCACAACAA-------------------------------------------TAACAATTGGTGTT---------------------GCTGCTG---T------TAATGTTGCTG-------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------TGTT
droSec2	scaffold_1:1297492-1297737 +		ACC---TTCGC-C---------------------------GTGTGCG---------------------------GCATA-CAACGTTGTTCGCT--------GAAGGTTGACAATCA----------------------------------------------A------TAGCAA-----------------C-AG---AAACAGCAA---CA------------------------------------------------------------------ACAACAACAATA------------------------------ATAAT------------------------------------ACT-----------------------------ACTACTAGCCACCACA----------------ATAGCAACAACTGCAGTAG---CAGCAGCGGCAGCAACAACAAC-----------------AT-T-AA----C-------------------------------------------------------------T-------AG----------------------------------------------------------------------------AGC---------ACAACACATCTTATCAAAGTTGATTGCATTTCAAA--------------------------------------------------------------AAGGGTTTTGTCTT-ACCGTC----------------------------TTGGAGT----------------------------------------------------------------TGCCCAATGCAACTCTGAATAGGC
droYak3	3R:24551793-24552049 +		ACG---CCAGC-AA----CAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAG---CACA-----------------------------------------------------------T----GCAACAGCAGCAGTCGCA---------------------------AACGACAC------------------------------AGC-----------------------------AGCAACATGCAACACA----------------GC------------AACAGCAGCAGCAACAGC------AAC------------------------------------------------------------------------------------------AACAGCAGCAA-------------------------------------------CAG-----------ACAGCCGGCATGTTTACAAGG-----------------------------TAAGTTCTTAGC------------------------------------------------GCCAA-----------------------CATTCA-GTC--------------TTATCTCCGT---TTTCACACAGCCACGCATCACAAAACAGCGCAAACATGCAAACTTTTAATTTCAATTTGTTTCGCACGCTTCGATATTTGTCAAT-------------T
droEre2	scaffold_4784:2830866-2831056 -		CAG---CATAT-GA-----------------------------------------------------------------------------------------------------------------------------------------------------A------CAGCAA---------------------------CAGCAACAA-------------------------------------------------------------CTGTGCAGCAGCAACAGCA------------------------------GCAAC------------------------------------AGC-----------------------------AGCAGCAGCAAACGCA----------------GCAGCAACAACCGCAGCAG---CAGCAACAGCAGCAACATCAGC--------CGAA-------------------------AACTCATTCATC---------------------------------------------------------------------------------------------AA-----------CAC--------------------------------------------------------------------------------------TTTCAA-AGCGCTTTTGCATCC-----------------ATTTGAGAA-T---TT-GTT------------------------------------------------------------------------------------------------------GTTTTTTAGCCAAAGGCCACTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATA---TACGC-CA----AGGTGTGGAA-------GGGAC----CGC-----------------------G---------CAA----------------------------------AACGACTGAATCCAAA-------------------------------------------------ATGT--------ATGCAGCAACAATAATAA-------------------------------------------------------------TCT--TAACAATAACAACAACAACA---------------------------ACAACAAC------------------------------AGT-----------------------------AGTAGCAACAAGAA-------CA---------CAATTAACAA------------GAGCAGCAGCAGCAACAATCGC--------AG------------------CTAGCTGACATTTGATAC------------C-------------------------------CCCAGCAA-------------------------------------------GAA-----------CAT--------------------------------------------------------------------------------------ATCAAA-TATGCTTTTATTTTA-----------------ACATTGTTAATTTTCT-GCT------------------------------------------------------------------------------------------------------GTTTATTAATTACTGTGCACAGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........GC-CA----AGGTGTGGAA-------GGGAC----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........GC-CA----AGGTGTGGAA-------GGGAC----CGC-----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ACAACAACA---------------------------ACAACAAC------------------------------AGT-----------------------------AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0

droVir3

ATA---TACGC-GA----AGGTGTGGAA-------GGGAC----CAC-----------------------G---------CAA----------------------------------AACAACTGAATCGAAA-------------------------------------------------ATGT--------ACG---------------------------------------C-------------------------------AATAA-----TCACAATAACAATAA-----CAAACACAAAAACAACTAGCAATGGTTG----------------------------------------------------------------TTGTT---GTC-----------------AGCCAACAGCAAGCG-------------------------------------------------------------------------ACATTTGACAC------------CTCTTGACAAC---------AGCAAC---AACAGCAACAA-------------------------------------------TAA-----------CTT--------------------------------------------------------------------------------------ATCAA-TT-CGCTTTCGTTTTA-----------------ATATTTCTAATTTGCT-GCT------------------------------------------------------------------------------------------------------GTTTGTTAATTACTGCGCAGAGCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................AACAACTGAATCGAAA-------------------------------------------------AT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GGAC----CAC-----------------------G---------CAA----------------------------------AACAACTGAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATA---TACGC-CA----AGGTGTGGAA-------GGGAC----CCC-----------------------G---------CAA----------------------------------AACGACTGAATCGAAA-------------------------------------------------ATGT--------ACG---------------------------------------AAAA---AGATTACGAGAAGAATAAGTG----------------A-----------------CAACCACAGCAGCAAC-AGCAATTGTTGCG-------------------------------CACT---------------------------TT------------------------------------GTGCG-------------------------------------------------------------------------ACATTTGACAC------------C-------AGCAGCAACAACCACATC---AACCACAACAA-------------------------------------------CAA-----------ATT--------------------------------------------------------------------------------------ATCAAT-TACGCTTTTGTGTTA-----------------ATATGAATAATTT----AAT------------------------------------------------------------------------------------------------------TTTTGTTGATTACTG--TGACTCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............A----AGGTGTGGAA-------GGGAC----CCC-----------------------G---------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
..................AGGTGTGGAA-------GGGAC----CCC-----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AACCACAACAA-------------------------------------------CAA-----------ATT--------------------------------------------------------------------------------------ATCAAT-TACG..............................................................................................................................................................................	29	1	1.00	1	1	0
.............A----AGGTGTGGAA-------GGGAC----CCC-----------------------G---------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
..................AGGTGTGGAA-------GGGAC----CCC-----------------------G---------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

droWil2

AAA---CACC----ACCA------------------------CCAAACGTGTCTAAATGAAAGTCAGGCCAAATTAGTAACTATTATGTACTACTACAAGCTAATAATTTATAGTTA----------------------------------------------G------AAACAA-----------------A-AA----------------------------------------------AGAA-AAGAAAAAAAAAAGAAACAA-----CCTTCCAAT---AACAGCA------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------CAG------CAACAAGAAA---------------------------------------------------------------------------------------AACAAA---AACAACAGCAACACAATAAGCAACAA----------------------------AAA------TTT-----------------------GTTATTAA-----TTTTTAATTTTACCTATAT-ATATACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAATT--GTATATAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................ATGAAAGTCAGGCCAAATTAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................CTAAATGAAAGTCAGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
................................................GTGTCTAAATGAAAGTCAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................AACGTGTCTAAATGAAAGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
....................................................CTAAATGAAAGTCAGGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA---AACAACAGCAACACA.......................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0

dp5

TAA---TTCGCC--GCCG--------------------------------------------------CCG---CCGCAGCAGCCACAGTCGCA---------------------------------C-----------------------AAC-------AA-------CAACAACAACA-ACAA--------CAGCAGCAACAGCAGCAACAGTTGCAACAGCTGCAACTGC---------------------------------------------------A---------------------------------------AC------------------------------------AGC-----------------------------AACAGCAGCAGAATCA----------------ACAACAACA------------ACAACAACAGC------AAC--------AGCAGCAGCAACAT-T-CA------------------------------------------------------------------------------------------------------------------------------CTAGC---------------------AGCACTAGCAC------CAGTAATACCAGTAGCAAATACACTACAAC----------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-T-CA------------------------------------------------------------------------------------------------------------------------------CTAGC---------------------AGCACTAGC....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAT-T-CA------------------------------------------------------------------------------------------------------------------------------CTAGC---------------------AGCACTAGCAC------C...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GC---------------------------------------------------A---------------------------------------AC------------------------------------AGC-----------------------------AACAGCAGCAGAATCA----------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CCG--------------------------------------------------CCG---CCGCAGCAGCCACAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGAATCA----------------ACAACAACA------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGAATCA----------------ACAACAACA------------ACAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................ACAACAACA-ACAA--------CAGCAGCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........CC--GCCG--------------------------------------------------CCG---CCGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................AACAACA-ACAA--------CAGCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACAACAACAGC------AAC--------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------ACAACAACAGC------AAC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AATCA----------------ACAACAACA------------ACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................ACAACAACA-ACAA--------CAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------ACAACAACAGC------AAC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACAACAACAGC------AAC--------AGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATCA----------------ACAACAACA------------ACAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------------ACAACAACAGC------AAC--------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC------AAC--------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ACA-ACAA--------CAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------------ACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................A--------CAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CAACAACAACA-ACAA--------CAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................A-ACAA--------CAGCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CA-ACAA--------CAGCAGCAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------AAC--------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AACA-ACAA--------CAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................AACA-ACAA--------CAGCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------AAC--------AGCAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

TAA---TTCGCC--GCCG--------------------------------------------------CCG---CCGCAGCAGCCACAGTCGCA---------------------------------C-----------------------AAC-------AA-------CAACAA------------------CAGCAGCAACAGCAA---CAGTTGCAACAGCTGCAACTGC---------------------------------------------------AACAGCA---------------------------------------AC------------------------------AG-CAGCAGAATCAACAACAAC---------------------------------A--------ACAGCAACAA------CAACAACAACAACAAC------AAC--------AGCAGCAGCAACAT-T-CA------------------------------------------------------------------------------------------------------------------------------GTAGC---------------------AGCACTAGCAC------CAGTAATACCAGTAGCAAATACACTACAAC----------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................A---------------------------------------AC------------------------------AG-CAGCAGAATCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........GCC--GCCG--------------------------------------------------CCG---CCGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AACAAC---------------------------------A--------ACAGCAACAA------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC------AAC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------CAACAACAACAACAAC------AAC--------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................AC-------AA-------CAACAA------------------CAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------CAACAACAACAACAAC------AAC--------AGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC------AAC--------AGCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAAC------AAC--------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0

droAna3

GTGATGCCA-------------------------------ATGGACA-------------------GGCCG---TAGCGGCTGCCACGGCCACATATCAGACCACGGCCAGCA-----------------------------------------------------------------------GT--------CCG---CAACAGCAA---CA------------------------------------------------------------------CCAACAGCAGCA------------------------------GCAAC------------------------------------ACC-----------------------------AGCAACAGCAACACCA----------------GCAGCAGCA------------ACACCAACAGC------AGC--------AGCAGCAGCAACAA-A-GT------------------------------------------------------------------------------------------------------------------------------GTT-----------------------GCAGCCAGC---ACAGCGAATGTTGCCGGTAAGTGTCTGGCTTGAAC----------------------------TT-AAACGCCCTATGTTATTT-----------------------GTTT-GTT------------------------------------------------------------------------------------------------------GGTT-GTAGTCTTTGTGTATGGTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCAGC---ACAGCGAATGTTGC...................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................GGACA-------------------GGCCG---TAGCGGCTGCCACGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------GCAGCCAGC---ACAGCGAATGTTGCCG.................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................TATCAGACCACGGCCAGCA-----------------------------------------------------------------------GT--------CCG---CAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------AGCAGCAGCAACAA-A-GT------------------------------------------------------------------------------------------------------------------------------GTT-----------------------.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACACCA----------------GCAGCAGCA------------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------ACACCAACAGC------AGC--------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------ACACCAACAGC------AGC--------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................	28	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------ACACCAACAGC------AGC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------ACACCAACAGC------AGC--------........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------ACACCAACAGC------AGC--------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CAGCAA---CA------------------------------------------------------------------CCAACAGCAGCA------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAGC------AGC--------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACACCA----------------GCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------ACACCAACAGC------AGC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------ACACCAACAGC------AGC--------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................AGCAA---CA------------------------------------------------------------------CCAACAGCAGCA------------------------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGC------AGC--------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................A------------------------------------------------------------------CCAACAGCAGCA------------------------------GCAAC------------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGC------AGC--------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droBip1

ATT---GGCA----GCTGACCTCCAGAA-------GGTAT----GCG-----------------------G---------CA---------------------------------------------AAAC------------------------------TA-------CAAAAGCAACAA----CAACCAC--------------AATAA------------------------ATTATAT-----------------------------------CAATAATTACAACACCA------------------------------ACAACA--ACCACAACAACAACAGCAGGAAGAAA-------AAGCAGAGAAAGCAGTACCGTTTATTGTT---T-C-----------------GATTTCGAGTAATTT--------------------------------------------------------------------------------------AATTGATTTCTTTTTTA-------------------AAA-----------CAA----AACAAAAAAAACTTG------------------------------------AT--------------------------------------------------------------------------------------TTTAAT-TGTATTTTTATTTTA-----------------ATTTTGTTGATTTATG-ATTATGTATGATTAATATG------------------------------------------------------------------------------------------------------TTTACGAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCC---GTCAT-GG----GGGTATTGAG----------AT----GGC-----------------------G---------CGA----------------------------------TTCACCCGGATCGCGTATATCGGGTTCTATATCCAGCAATACTG--G------CAACAC---------------------------CAATAA-----------------------------------------------------------------------------------------CAACCATCATCACAGC-AGCAGCAGCAACG-------------------------------CTCA---------------------------TCAGCAGCAGCAGCACA-GCAGCAAC--A--------ACAATCACAT------CAACAATAATAACAACAAC---AAC--------------------AA-T-CG--------------------------------------------------------------------------CGA----GGTACACA----------------------------------------------------------------TAAAAA---TTATATCAAATTT---------------------------------------------TA--A-------------GGAAATATTT-----------------AAA--------AAT------------------------------------------------------------------------------------------------------ATTTAAAAATTATTTTAAAATATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATG---CCGAT-CA----ATTTATAACGCTGGCCC----------CC-----------------------A---CA-----AA----------------------------------GGCGGCCAAAACAT------------------------------CG-------CCGAGCAAGCAA----CAAGCAT--------------TACAA------------------------T-CCCAA-----------------------------------TCGCAATTGCAATTGCA------------------------------ATCGCA--AGTGCAACAACAGCAGCAGCAACAAG-------CCACAAATGCGTCATCGCC---------------------------------G-----------------------------GCGGCAACAGGCGA--------TGCAAC-------------------------------------------------------------------------CACAAC---GCCCACAACGA-------------------------------------------TAACAATTGGTGTT---------------------GCTGCTGGCGT------TGCTGTTGCTG-------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------G------------------TTGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAA---CAAGT-GC----AATTC----------------------------------------------------------------------------------------------------------------------------ACACAAC-------AA-------CAACAG----------CAACTG--------CAACAATAA---CAA---------------C---AAT-------------------------------ACCGT-----CAACAACAACAATAATAATA---------------------------ACAATAAT------------------------------AAT-----------------------------AATAATAACAATAA-------TT---------CAAGCAACAA------------TACCAACAACAACAACAATAAC--------CA------------------T-------------------------------------------------------------T-------------------------------------------------------------------------------------ACAACAA---TTACAATAACTATTATAAGAAAAAGTCTCG-----------------------------------TAT-----------GCCGCCCATTTGCCGTTAGTAT--TGCATCCATC-TCT------------------------------------------------------------------------------------------------------ATATACTGTATATACTGTACCCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATT---GCCCA--------A--------------------GTGCAGA-------------------CGCTG---------CAGGGCCA--------TCAGATCATA---------------------GGCAAT-------------------------------------------------TTAA--------ATCAGGTGAATATGAC--------------------------------------------------------TG-----ACTTCCAACAACAGCAGCAGCAGCA---------------------------ACAACAAC------------------------------AGC-----------------------------AACAACAACAACAA-------------------------CAAC---AACAGCAGCAGCAACAGCAAA--------CACAAT-----------------C-ACAACAGACGCT----------------------------------------------------------------------------------CTGATCGGAC---CGTAATCGT-AGA-----------TCC--------------------------------------------------------------------------------------ACCATA-TACTATTCTGTATAA-----------------TTATTATTAATT-------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTA---AACGC-A---------------------------GTGCAGA-------------------C-----------------------------------------------------AACCAGCGTTT---------------CCCTGG-----------GCAGCGG---------------------------------TGGCAG----------------------------------------------------------------CCT-GCAGCAACAACAGCAGCAGCA---------------------------ACTTAACC------------------------------AGC-----------------------------AGCAGCAACAAATG-------TA---------CATGCAACACA------------TGCAGCAGCAGCAACATCAGC-----------------ACATGC-AAAACATGCGGC----------------------------------------------------------------------------------ACAACTAGACTAAC--------G------------------------------------------------------------------CTGACTTGAGTGCAGACAGACATATGTAAAACATAAG------TT-TAATTTAGGAGTAGTAT-----------------------TATTCT-ATC------------------------------------------------------------------------------------------------------TTGTACCGGTT---------TTTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCA---AACA----ACCAGCGTT-----------------------------------------------------------------------------------------------------------C---------------CACTGG-----------GCAGCGG---------------------------------TGGTAG----------------------------------------------------------------CCT----GCAACAACAGCA---GCA---------------------------ACTCAACC------------------------------AAC-----------------------------AGCAGCAACAAATA-------TA---------CATGCAACATATGCAGCAG---CAGCAGCAGCAGCAACATCAGC-----------------ATATGC-AAAACATGCGAC----------------------------------------------------------------------------------ATAACTAGACTTAC--------G------------------------------------------------------------------CAGACT-----GCAATCAGACATATGTAAAACATAAG------CT-TAATTTAAAAGTAGTATTT-----------------ATATTGTACCGGTT--------------------------------------------------------------------------------------TT--------------TTGCATTA---ATT--GTCGAGTA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGA---CATGC-AG----C--------AGCAACAT----------CT-----------------------C---GA-----GG----------------------------------AGCAGCAGCAACAC---------------------------------------------------------------------------CACCAT------------------C---TGC-------------------------------ACTAC-----CAGCAGCAGCAGCAGCAACA---------------------------ACATTACC------------------------------AGC-----------------------------AGCAGCAGCAACAT-------------------------CTCCCGCAGCAG---CAGCAACAGCAGCAGCATCAGC--------TGTA-----------------------------------CCATCACTATCATCCTGG-------------------CCA-----------CGA----GGCAGCGGTGG----------------------------------------------------------------CCG---CCAGTGCTGGCCT---------------------------------------------CC--T-------------GGATATATCC-----------ACATTGTAAATTATTG-AAA--------------------------------------------------------------------------------------------------------ATATTAACTAAAAGCCCTAGGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAG---GCGA--------------GACA-------GAAGC----CAA-----------------------T---------AAG----------------------------------AACAGCAAGAACAACA-------------------------------------------------ATGC--------C------------GG---------------------------AGCGGAC-----------------------------------CAAA---AAT---------------------------------------------------------------------------AAT-----------------------------AATAATAACAACAACA----------------ACAACAACAACAGCAGTAG---CAGCAGCAGCAGCACTACCAAG-----------------AC--GA-------------------------------------------------------------AAA-----------AGA----GGCAAAAGAAGTTGA------------------------------------GT--------------------------------------------------------------------------------------TCTGGG-CGTGATTTACCGTTA-----------------ACAGTTTTTTTGTGTT-ACTGTTGAAAATTAATCTTATTGCTGGCGATTTCACTGCG-----------------------------------------------------------------ATT--TTCACTGCA--CCGCAGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACTGCG-----------------------------------------------------------------ATT--TTCACTG............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................ATAACAACAACA----------------ACAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAG---CAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA----------------ACAACAACAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTAG---CAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------ACAACAACAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAG---CAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA----------------ACAACAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATG---CCGAT-CA----ATTTATAACGCTGGCCC----------CC-----------------------A---CA-----AA----------------------------------GGCGGCCAAAACAT------------------------------CA-------CCGAACAAGCAG----CAAGCAT--------------------------------------------------------------------------------------TGCAATTGCAACAGCA------------------------------ACATGA--GGAGCAGCAGCGGCAGCAGCAACAGG-------CCACAAATGCGTCATCGCC---------------------------------G-----------------------------GCGGCAACTGGCGA--------TGCAAC-------------------------------------------------------------------------CACAAC---GCCCACAACAA-------------------------------------------TAACAATTGGTGTT---------------------GCTGCTG---T------TAATGTTGCTG-------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------TGTT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ACC---TTCGC-C---------------------------GTGTGCG---------------------------GCATA-CAACGTTGTTCGCT--------GAAGGTTGACAATCA----------------------------------------------A------TAGCAA-----------------C-AG---AAACAGCAA---CA------------------------------------------------------------------ACAACAACAATA------------------------------ATAAT------------------------------------ACT-----------------------------ACTACTAGCCACCACA----------------ATAGCAACAACTGCAGTAG---CAGCAGCGGCAGCAACAACAAC-----------------AT-T-AA----C-------------------------------------------------------------T-------AG----------------------------------------------------------------------------AGC---------ACAACACATCTTATCAAAGTTGATTGCATTTCAAA--------------------------------------------------------------AAGGGTTTTGTCTT-ACCGTC----------------------------TTGGAGT----------------------------------------------------------------TGCCCAATGCAACTCTGAATAGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACG---CCAGC-AA----CAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAG---CACA-----------------------------------------------------------T----GCAACAGCAGCAGTCGCA---------------------------AACGACAC------------------------------AGC-----------------------------AGCAACATGCAACACA----------------GC------------AACAGCAGCAGCAACAGC------AAC------------------------------------------------------------------------------------------AACAGCAGCAA-------------------------------------------CAG-----------ACAGCCGGCATGTTTACAAGG-----------------------------TAAGTTCTTAGC------------------------------------------------GCCAA-----------------------CATTCA-GTC--------------TTATCTCCGT---TTTCACACAGCCACGCATCACAAAACAGCGCAAACATGCAAACTTTTAATTTCAATTTGTTTCGCACGCTTCGATATTTGTCAAT-------------T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................CAACACA----------------GC------------AACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAGCAGCAGCAACAGC------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC------AAC------------------------------------------------------------------------------------------AACAGCAGCA............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAG---CATAT-GA-----------------------------------------------------------------------------------------------------------------------------------------------------A------CAGCAA---------------------------CAGCAACAA-------------------------------------------------------------CTGTGCAGCAGCAACAGCA------------------------------GCAAC------------------------------------AGC-----------------------------AGCAGCAGCAAACGCA----------------GCAGCAACAACCGCAGCAG---CAGCAACAGCAGCAACATCAGC--------CGAA-------------------------AACTCATTCATC---------------------------------------------------------------------------------------------AA-----------CAC--------------------------------------------------------------------------------------TTTCAA-AGCGCTTTTGCATCC-----------------ATTTGAGAA-T---TT-GTT------------------------------------------------------------------------------------------------------GTTTTTTAGCCAAAGGCCACTGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAACATCAGC--------CGAA-------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......ATAT-GA-----------------------------------------------------------------------------------------------------------------------------------------------------A------CAGCAA---------------------------CAGCAACAA-------------------------------------------------------------CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCGCAGCAG---CAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................CAGCAACAGCA------------------------------GCAAC------------------------------------AGC-----------------------------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GCAGCAACAGCA------------------------------GCAAC------------------------------------AGC-----------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AGCAACAGCA------------------------------GCAAC------------------------------------AGC-----------------------------AGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0

dmo_562

scaffold_6359:2120385-2120535 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.7	-15.6	-15.5